Multiple sequence alignment - TraesCS2A01G375300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G375300 chr2A 100.000 2943 0 0 1 2943 617822860 617825802 0.000000e+00 5435
1 TraesCS2A01G375300 chr2D 93.423 2296 91 17 1 2276 476016532 476018787 0.000000e+00 3349
2 TraesCS2A01G375300 chr2D 85.865 665 69 13 2271 2914 476019132 476019792 0.000000e+00 684
3 TraesCS2A01G375300 chr2D 76.770 452 87 17 1478 1920 475985216 475985658 1.360000e-58 237
4 TraesCS2A01G375300 chr2D 76.264 455 90 17 1478 1923 475877262 475877707 2.950000e-55 226
5 TraesCS2A01G375300 chr2B 90.522 2279 101 33 50 2276 556692262 556694477 0.000000e+00 2905
6 TraesCS2A01G375300 chr2B 84.896 384 37 9 2567 2937 556694736 556695111 4.630000e-98 368
7 TraesCS2A01G375300 chr2B 76.991 452 90 13 1478 1922 556596098 556596542 2.270000e-61 246
8 TraesCS2A01G375300 chr2B 76.739 460 85 20 1478 1925 556517600 556518049 1.360000e-58 237
9 TraesCS2A01G375300 chr6A 86.878 442 58 0 1478 1919 441807244 441806803 2.040000e-136 496
10 TraesCS2A01G375300 chr6D 86.652 442 59 0 1478 1919 306203578 306203137 9.480000e-135 490
11 TraesCS2A01G375300 chr6B 86.199 442 61 0 1478 1919 473215316 473214875 2.050000e-131 479


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G375300 chr2A 617822860 617825802 2942 False 5435.0 5435 100.000 1 2943 1 chr2A.!!$F1 2942
1 TraesCS2A01G375300 chr2D 476016532 476019792 3260 False 2016.5 3349 89.644 1 2914 2 chr2D.!!$F3 2913
2 TraesCS2A01G375300 chr2B 556692262 556695111 2849 False 1636.5 2905 87.709 50 2937 2 chr2B.!!$F3 2887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.034896 TATGCCTAGGCTTTAGCGGC 59.965 55.0 33.07 6.09 42.77 6.53 F
700 760 0.036875 GGCCAGGCCGAATTAGCTAT 59.963 55.0 17.05 0.00 39.62 2.97 F
1486 1557 0.713883 GTTCACCGTATGCAGTGACG 59.286 55.0 6.05 8.53 42.49 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 1557 0.035458 CCGATATCTTGGGACCCAGC 59.965 60.0 14.35 0.00 33.81 4.85 R
1660 1731 0.247460 TGGTGGAGACGAAGAGCATG 59.753 55.0 0.00 0.00 0.00 4.06 R
2658 3093 0.401738 AGTTTGAGCAAGGCCAGCTA 59.598 50.0 21.00 5.71 43.58 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 0.034896 TATGCCTAGGCTTTAGCGGC 59.965 55.000 33.07 6.09 42.77 6.53
134 135 3.052745 ACGTCGATGAATTGATGGATCG 58.947 45.455 12.58 0.00 39.22 3.69
144 156 1.152963 GATGGATCGTGGTTGGGGG 60.153 63.158 0.00 0.00 0.00 5.40
163 175 2.896854 TCCATTGCGGCAGCGATC 60.897 61.111 8.78 0.00 45.35 3.69
164 176 3.957535 CCATTGCGGCAGCGATCC 61.958 66.667 8.78 0.00 45.35 3.36
207 219 0.816018 TGCGTTGGACCGTCAACAAT 60.816 50.000 0.00 0.00 45.16 2.71
208 220 0.110373 GCGTTGGACCGTCAACAATC 60.110 55.000 0.00 0.00 45.16 2.67
209 221 0.515564 CGTTGGACCGTCAACAATCC 59.484 55.000 0.00 0.00 45.16 3.01
219 231 3.818773 CCGTCAACAATCCTACAAACCTT 59.181 43.478 0.00 0.00 0.00 3.50
222 234 5.334105 CGTCAACAATCCTACAAACCTTGAG 60.334 44.000 0.00 0.00 0.00 3.02
230 242 3.753272 CCTACAAACCTTGAGGATGTGTG 59.247 47.826 17.41 12.12 38.50 3.82
233 245 2.559668 CAAACCTTGAGGATGTGTGCAT 59.440 45.455 3.59 0.00 38.94 3.96
236 248 3.548770 ACCTTGAGGATGTGTGCATATG 58.451 45.455 3.59 0.00 38.94 1.78
237 249 2.292569 CCTTGAGGATGTGTGCATATGC 59.707 50.000 21.09 21.09 38.47 3.14
262 274 2.476619 GTCCACGTGCATGCAGATATAC 59.523 50.000 23.41 13.26 0.00 1.47
271 283 4.220602 TGCATGCAGATATACGGTCTACAT 59.779 41.667 18.46 0.00 31.46 2.29
276 288 5.350640 TGCAGATATACGGTCTACATCTACG 59.649 44.000 0.00 0.00 0.00 3.51
450 510 2.750237 CCACCCGCCTTTACCTGC 60.750 66.667 0.00 0.00 0.00 4.85
537 597 1.068083 ACGTAGCCATCTCGCCATG 59.932 57.895 0.00 0.00 0.00 3.66
597 657 4.982295 GCTTTCGGGCAAAATGAATATACC 59.018 41.667 0.00 0.00 0.00 2.73
667 727 4.767255 CGCCAAAGCTCCGCCTCT 62.767 66.667 0.00 0.00 36.60 3.69
668 728 2.821810 GCCAAAGCTCCGCCTCTC 60.822 66.667 0.00 0.00 35.50 3.20
669 729 2.985456 CCAAAGCTCCGCCTCTCT 59.015 61.111 0.00 0.00 0.00 3.10
698 758 2.193248 GGCCAGGCCGAATTAGCT 59.807 61.111 17.05 0.00 39.62 3.32
700 760 0.036875 GGCCAGGCCGAATTAGCTAT 59.963 55.000 17.05 0.00 39.62 2.97
821 891 1.674322 AAAAGGATCCACCACCGCG 60.674 57.895 15.82 0.00 42.04 6.46
822 892 4.778143 AAGGATCCACCACCGCGC 62.778 66.667 15.82 0.00 42.04 6.86
912 982 2.811136 CGCTAAGTTAACCCACCACCAA 60.811 50.000 0.88 0.00 0.00 3.67
915 985 2.061509 AGTTAACCCACCACCAACAC 57.938 50.000 0.88 0.00 0.00 3.32
962 1032 2.219458 CGGACCTAGCTAGTTGATCGA 58.781 52.381 19.31 0.00 0.00 3.59
991 1061 0.948141 GTCGAGCTTTCTGCAGCAGT 60.948 55.000 22.10 1.79 45.94 4.40
1008 1078 2.354259 CAGTCAGCCAAGATGAAGTCC 58.646 52.381 0.00 0.00 26.97 3.85
1187 1257 2.289444 GCTACAAGCACAGTAAGTCCCA 60.289 50.000 0.00 0.00 41.89 4.37
1193 1263 3.614092 AGCACAGTAAGTCCCAATCATG 58.386 45.455 0.00 0.00 0.00 3.07
1214 1284 2.760634 ATGCATGCATGGCCATATTG 57.239 45.000 31.74 16.62 35.03 1.90
1218 1288 2.897699 TGCATGGCCATATTGTGCA 58.102 47.368 23.71 23.71 42.86 4.57
1223 1293 1.031235 TGGCCATATTGTGCAATCGG 58.969 50.000 0.00 5.08 32.50 4.18
1228 1298 3.563808 GCCATATTGTGCAATCGGACTTA 59.436 43.478 14.02 0.00 33.94 2.24
1229 1299 4.036262 GCCATATTGTGCAATCGGACTTAA 59.964 41.667 14.02 0.00 33.94 1.85
1230 1300 5.278463 GCCATATTGTGCAATCGGACTTAAT 60.278 40.000 14.02 0.00 33.94 1.40
1231 1301 6.373779 CCATATTGTGCAATCGGACTTAATC 58.626 40.000 0.18 0.00 33.94 1.75
1232 1302 4.900635 ATTGTGCAATCGGACTTAATCC 57.099 40.909 0.00 0.00 45.20 3.01
1370 1440 1.220749 GGCTTCCGTGAGCATGGTA 59.779 57.895 8.48 0.00 44.49 3.25
1413 1484 5.514204 GTGCATACATGTTTCTTCTGCAATC 59.486 40.000 2.30 0.00 39.56 2.67
1419 1490 2.948979 TGTTTCTTCTGCAATCCAACGT 59.051 40.909 0.00 0.00 0.00 3.99
1428 1499 4.576873 TCTGCAATCCAACGTCTGTTAAAA 59.423 37.500 0.00 0.00 36.28 1.52
1486 1557 0.713883 GTTCACCGTATGCAGTGACG 59.286 55.000 6.05 8.53 42.49 4.35
1682 1753 1.016653 GCTCTTCGTCTCCACCAAGC 61.017 60.000 0.00 0.00 0.00 4.01
2058 2132 0.804364 CTGCGCCATCTTTTGCTGTA 59.196 50.000 4.18 0.00 0.00 2.74
2188 2262 7.307989 CGATTGCTTAATTTGTACTAGGATGGG 60.308 40.741 0.00 0.00 0.00 4.00
2245 2319 6.045955 TGGAAAGGCAGTTGTTCAAAATTAC 58.954 36.000 0.00 0.00 0.00 1.89
2247 2321 7.068839 TGGAAAGGCAGTTGTTCAAAATTACTA 59.931 33.333 0.00 0.00 0.00 1.82
2249 2323 9.476202 GAAAGGCAGTTGTTCAAAATTACTATT 57.524 29.630 0.00 0.00 0.00 1.73
2303 2727 0.737715 CTTACCTCGGCTCAGCACAC 60.738 60.000 0.00 0.00 0.00 3.82
2312 2739 2.665519 CGGCTCAGCACACATTAACAAC 60.666 50.000 0.00 0.00 0.00 3.32
2317 2744 1.194547 AGCACACATTAACAACGAGCG 59.805 47.619 0.00 0.00 0.00 5.03
2318 2745 1.070175 GCACACATTAACAACGAGCGT 60.070 47.619 0.00 0.00 0.00 5.07
2325 2752 1.790755 TAACAACGAGCGTGCTCAAT 58.209 45.000 20.75 6.26 42.86 2.57
2395 2823 2.819608 TCAAAGTTGGCTGATAGTTGGC 59.180 45.455 0.00 0.00 0.00 4.52
2616 3051 7.443302 TTTCATCCTCTGTCTCCAAGATAAT 57.557 36.000 0.00 0.00 0.00 1.28
2628 3063 9.656323 TGTCTCCAAGATAATGTACCTACTATT 57.344 33.333 0.00 0.00 0.00 1.73
2658 3093 9.469807 CTCGAGCTATGTAGTCAAAATAGAAAT 57.530 33.333 0.00 0.00 0.00 2.17
2680 3115 2.192608 CTGGCCTTGCTCAAACTCGC 62.193 60.000 3.32 0.00 0.00 5.03
2698 3133 3.018856 TCGCCTAACTATTGAACCGAGA 58.981 45.455 0.00 0.00 0.00 4.04
2753 3189 1.000163 GAGTCGGTCTTGAGTCAAGCA 60.000 52.381 25.31 13.11 40.84 3.91
2754 3190 1.412710 AGTCGGTCTTGAGTCAAGCAA 59.587 47.619 25.31 8.93 40.84 3.91
2756 3192 2.032808 GTCGGTCTTGAGTCAAGCAAAC 60.033 50.000 25.31 18.41 40.84 2.93
2760 3208 4.438744 CGGTCTTGAGTCAAGCAAACTTTT 60.439 41.667 25.31 0.00 40.84 2.27
2816 3264 1.757682 TCTTGCAACCCGTTTTGTCT 58.242 45.000 0.00 0.00 0.00 3.41
2821 3269 1.578583 CAACCCGTTTTGTCTCGACT 58.421 50.000 0.00 0.00 0.00 4.18
2826 3274 0.776451 CGTTTTGTCTCGACTGACGG 59.224 55.000 0.00 0.00 42.82 4.79
2827 3275 1.849097 GTTTTGTCTCGACTGACGGT 58.151 50.000 0.00 0.00 42.82 4.83
2837 3293 0.529773 GACTGACGGTGTTGTGCTCA 60.530 55.000 0.00 0.00 0.00 4.26
2844 3300 2.230266 ACGGTGTTGTGCTCAAAAGTTT 59.770 40.909 2.18 0.00 35.20 2.66
2860 3316 7.948137 TCAAAAGTTTTTCTTTCACATGTTCG 58.052 30.769 0.00 0.00 44.50 3.95
2883 3339 3.181440 ACTTCTTGTTCATGGGCTTCTCA 60.181 43.478 0.00 0.00 0.00 3.27
2884 3340 3.063510 TCTTGTTCATGGGCTTCTCAG 57.936 47.619 0.00 0.00 0.00 3.35
2888 3344 0.034767 TTCATGGGCTTCTCAGGCTG 60.035 55.000 8.58 8.58 45.26 4.85
2935 3391 9.847224 TTTTTAGACCTACTTTCTTCACTCAAT 57.153 29.630 0.00 0.00 0.00 2.57
2940 3396 9.660180 AGACCTACTTTCTTCACTCAATAAATC 57.340 33.333 0.00 0.00 0.00 2.17
2941 3397 9.660180 GACCTACTTTCTTCACTCAATAAATCT 57.340 33.333 0.00 0.00 0.00 2.40
2942 3398 9.442047 ACCTACTTTCTTCACTCAATAAATCTG 57.558 33.333 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.997681 GCTAAAGCCTAGGCATAGCTAAC 59.002 47.826 38.54 23.62 46.08 2.34
56 57 2.095212 TCACTGAAGATCGACCAGAACG 60.095 50.000 15.55 0.00 0.00 3.95
145 157 3.173390 GATCGCTGCCGCAATGGAC 62.173 63.158 0.00 0.00 42.00 4.02
146 158 2.896854 GATCGCTGCCGCAATGGA 60.897 61.111 0.00 0.00 42.00 3.41
148 160 3.957535 GGGATCGCTGCCGCAATG 61.958 66.667 1.84 0.00 35.30 2.82
155 167 3.969250 TTGTTCCCGGGATCGCTGC 62.969 63.158 27.48 11.04 34.56 5.25
156 168 1.376683 TTTGTTCCCGGGATCGCTG 60.377 57.895 27.48 0.89 34.56 5.18
157 169 1.376812 GTTTGTTCCCGGGATCGCT 60.377 57.895 27.48 0.00 34.56 4.93
158 170 1.366854 GAGTTTGTTCCCGGGATCGC 61.367 60.000 27.48 18.07 34.56 4.58
159 171 0.249398 AGAGTTTGTTCCCGGGATCG 59.751 55.000 27.48 0.00 0.00 3.69
160 172 2.084546 CAAGAGTTTGTTCCCGGGATC 58.915 52.381 27.48 24.70 0.00 3.36
161 173 1.886655 GCAAGAGTTTGTTCCCGGGAT 60.887 52.381 27.48 8.18 36.65 3.85
162 174 0.536460 GCAAGAGTTTGTTCCCGGGA 60.536 55.000 22.63 22.63 36.65 5.14
163 175 1.524008 GGCAAGAGTTTGTTCCCGGG 61.524 60.000 16.85 16.85 36.65 5.73
164 176 1.852067 CGGCAAGAGTTTGTTCCCGG 61.852 60.000 0.00 0.00 35.28 5.73
207 219 3.650942 ACACATCCTCAAGGTTTGTAGGA 59.349 43.478 10.34 10.34 39.53 2.94
208 220 3.753272 CACACATCCTCAAGGTTTGTAGG 59.247 47.826 6.95 0.00 33.57 3.18
209 221 3.189287 GCACACATCCTCAAGGTTTGTAG 59.811 47.826 6.95 5.32 33.57 2.74
230 242 0.308684 CACGTGGACCATGCATATGC 59.691 55.000 21.09 21.09 42.50 3.14
233 245 1.298014 TGCACGTGGACCATGCATA 59.702 52.632 17.06 0.00 44.17 3.14
236 248 2.486504 CATGCACGTGGACCATGC 59.513 61.111 18.88 13.08 39.88 4.06
237 249 2.261172 CTGCATGCACGTGGACCATG 62.261 60.000 18.46 22.68 39.38 3.66
262 274 2.385315 CATGCACGTAGATGTAGACCG 58.615 52.381 0.00 0.00 0.00 4.79
271 283 2.929398 CAGTAACATGCATGCACGTAGA 59.071 45.455 25.37 10.09 0.00 2.59
276 288 7.809665 TCATAATATCAGTAACATGCATGCAC 58.190 34.615 25.37 22.46 0.00 4.57
310 322 1.328680 GCATTGCACTCGGACAGTATG 59.671 52.381 3.15 0.00 46.00 2.39
335 379 4.581301 GCCTCTGCAGACGACTTTCGTA 62.581 54.545 13.74 0.00 45.33 3.43
349 396 1.575576 GATCGATGCCATGCCTCTGC 61.576 60.000 0.54 0.00 38.26 4.26
412 472 3.353836 CGTGTCGGGGGCAACAAG 61.354 66.667 0.00 0.00 39.74 3.16
450 510 2.202932 CTCGCTCCCACCGGATTG 60.203 66.667 9.46 0.00 37.60 2.67
554 614 2.402378 GCGCGATTCGAGATTTCTCTAC 59.598 50.000 12.10 0.00 40.75 2.59
584 644 3.317993 GCCAGGTGCGGTATATTCATTTT 59.682 43.478 0.00 0.00 0.00 1.82
663 723 1.118838 CCAACCTAGCCAGAGAGAGG 58.881 60.000 0.00 0.00 35.05 3.69
698 758 3.157949 TGGCCGCGTCATCCCATA 61.158 61.111 4.92 0.00 0.00 2.74
912 982 4.935495 CTGCGCTGGTGGTGGTGT 62.935 66.667 9.73 0.00 0.00 4.16
947 1017 5.351233 AGAACGATCGATCAACTAGCTAG 57.649 43.478 24.34 19.44 0.00 3.42
948 1018 5.558463 CGAAGAACGATCGATCAACTAGCTA 60.558 44.000 24.34 0.00 45.77 3.32
949 1019 4.602995 GAAGAACGATCGATCAACTAGCT 58.397 43.478 24.34 9.69 0.00 3.32
950 1020 3.419270 CGAAGAACGATCGATCAACTAGC 59.581 47.826 24.34 13.32 45.77 3.42
962 1032 2.095161 AGAAAGCTCGACGAAGAACGAT 60.095 45.455 0.00 0.00 45.77 3.73
991 1061 1.339438 GCTGGACTTCATCTTGGCTGA 60.339 52.381 0.00 0.00 0.00 4.26
1223 1293 3.818387 CATGCATGCATCGGATTAAGTC 58.182 45.455 30.07 0.00 33.90 3.01
1370 1440 0.523546 CGATCGAGTGCGTGCTACTT 60.524 55.000 10.26 0.00 38.98 2.24
1413 1484 4.675114 GCATCAACTTTTAACAGACGTTGG 59.325 41.667 0.00 0.00 36.52 3.77
1419 1490 5.743026 TTCACGCATCAACTTTTAACAGA 57.257 34.783 0.00 0.00 0.00 3.41
1428 1499 1.868997 CGCCTTTCACGCATCAACT 59.131 52.632 0.00 0.00 0.00 3.16
1445 1516 4.083324 ACAATGTTGGTCAGAATACAAGCG 60.083 41.667 0.00 0.00 0.00 4.68
1486 1557 0.035458 CCGATATCTTGGGACCCAGC 59.965 60.000 14.35 0.00 33.81 4.85
1660 1731 0.247460 TGGTGGAGACGAAGAGCATG 59.753 55.000 0.00 0.00 0.00 4.06
1926 1997 1.944234 TAGTCATTGCAGCTCCGCGA 61.944 55.000 8.23 0.00 33.35 5.87
1968 2039 3.048941 GCCTCGCGTACGTCTTCCT 62.049 63.158 17.90 0.00 41.18 3.36
2058 2132 2.423660 CCAGGGCTACTACTACTGCTCT 60.424 54.545 0.00 0.00 36.59 4.09
2188 2262 2.408368 GCAGCACGGTTAATTTCTTTGC 59.592 45.455 0.00 0.00 0.00 3.68
2267 2341 6.349944 CGAGGTAAGTCTAGGTTGCTTAAGAA 60.350 42.308 6.67 0.00 0.00 2.52
2303 2727 1.459209 TGAGCACGCTCGTTGTTAATG 59.541 47.619 14.00 0.00 45.48 1.90
2312 2739 1.849219 GAGTTCTATTGAGCACGCTCG 59.151 52.381 14.00 0.34 45.48 5.03
2317 2744 3.801594 GCAGCTAGAGTTCTATTGAGCAC 59.198 47.826 0.00 0.00 0.00 4.40
2318 2745 3.181471 GGCAGCTAGAGTTCTATTGAGCA 60.181 47.826 0.00 0.00 0.00 4.26
2325 2752 3.977312 TGTTAGGGCAGCTAGAGTTCTA 58.023 45.455 0.00 0.00 0.00 2.10
2374 2802 2.819608 GCCAACTATCAGCCAACTTTGA 59.180 45.455 0.00 0.00 0.00 2.69
2395 2823 7.621832 GAGATCGACTCAAGATCATTACAAG 57.378 40.000 8.62 0.00 45.05 3.16
2494 2922 8.468349 CGTTTTACACAGAAACACACATAATTG 58.532 33.333 0.00 0.00 36.94 2.32
2589 3024 6.874278 TCTTGGAGACAGAGGATGAAAATA 57.126 37.500 0.00 0.00 44.54 1.40
2616 3051 5.678583 AGCTCGAGTACAATAGTAGGTACA 58.321 41.667 15.13 0.00 41.74 2.90
2628 3063 6.505044 TTTTGACTACATAGCTCGAGTACA 57.495 37.500 15.13 0.00 0.00 2.90
2658 3093 0.401738 AGTTTGAGCAAGGCCAGCTA 59.598 50.000 21.00 5.71 43.58 3.32
2680 3115 9.595823 TCTTTTTATCTCGGTTCAATAGTTAGG 57.404 33.333 0.00 0.00 0.00 2.69
2698 3133 8.635765 TTGGTTGAGTATGAGCTTCTTTTTAT 57.364 30.769 0.00 0.00 0.00 1.40
2768 3216 0.601311 GGCTCGTGAACTGCTCAAGT 60.601 55.000 0.00 0.00 42.60 3.16
2794 3242 3.132111 AGACAAAACGGGTTGCAAGAAAT 59.868 39.130 0.00 0.00 31.29 2.17
2816 3264 1.590525 GCACAACACCGTCAGTCGA 60.591 57.895 0.00 0.00 42.86 4.20
2821 3269 1.400142 CTTTTGAGCACAACACCGTCA 59.600 47.619 0.00 0.00 35.63 4.35
2826 3274 6.466308 AAGAAAAACTTTTGAGCACAACAC 57.534 33.333 0.00 0.00 34.94 3.32
2844 3300 6.093495 ACAAGAAGTCGAACATGTGAAAGAAA 59.907 34.615 0.00 0.00 0.00 2.52
2860 3316 3.416156 AGAAGCCCATGAACAAGAAGTC 58.584 45.455 0.00 0.00 0.00 3.01
2883 3339 0.895559 GCAAGTAAACCTGGCAGCCT 60.896 55.000 14.15 0.00 40.17 4.58
2884 3340 1.178534 TGCAAGTAAACCTGGCAGCC 61.179 55.000 9.56 3.66 45.49 4.85
2888 3344 1.256812 ATGGTGCAAGTAAACCTGGC 58.743 50.000 0.00 0.00 40.91 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.