Multiple sequence alignment - TraesCS2A01G374300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G374300 chr2A 100.000 3413 0 0 1 3413 617440962 617437550 0.000000e+00 6303.0
1 TraesCS2A01G374300 chr2A 83.492 315 16 12 1 280 180100329 180100642 9.390000e-66 261.0
2 TraesCS2A01G374300 chr2A 90.066 151 12 2 133 280 57461543 57461693 3.480000e-45 193.0
3 TraesCS2A01G374300 chr2A 91.270 126 9 1 1 124 65197267 65197392 1.630000e-38 171.0
4 TraesCS2A01G374300 chr2D 90.431 1881 140 24 1558 3413 474893244 474891379 0.000000e+00 2440.0
5 TraesCS2A01G374300 chr2D 88.034 936 50 18 641 1521 474894175 474893247 0.000000e+00 1051.0
6 TraesCS2A01G374300 chr2D 95.652 253 11 0 369 621 474898226 474897974 1.140000e-109 407.0
7 TraesCS2A01G374300 chr2D 100.000 36 0 0 982 1017 64731445 64731480 2.200000e-07 67.6
8 TraesCS2A01G374300 chr2B 91.273 1547 109 14 1878 3413 555846453 555844922 0.000000e+00 2085.0
9 TraesCS2A01G374300 chr2B 87.404 1175 93 30 739 1883 555849662 555848513 0.000000e+00 1299.0
10 TraesCS2A01G374300 chr2B 95.652 253 11 0 369 621 555853830 555853578 1.140000e-109 407.0
11 TraesCS2A01G374300 chr2B 100.000 33 0 0 982 1014 101069398 101069430 1.020000e-05 62.1
12 TraesCS2A01G374300 chr7A 87.748 302 18 11 1 284 47937623 47937323 5.460000e-88 335.0
13 TraesCS2A01G374300 chr7A 85.577 312 22 8 1 290 162510288 162509978 4.280000e-79 305.0
14 TraesCS2A01G374300 chr7A 89.655 145 15 0 140 284 55368614 55368758 5.820000e-43 185.0
15 TraesCS2A01G374300 chr7A 88.636 132 12 2 1 129 663176216 663176347 1.270000e-34 158.0
16 TraesCS2A01G374300 chr7A 74.884 215 46 8 2466 2676 657892127 657891917 1.300000e-14 91.6
17 TraesCS2A01G374300 chr1A 93.525 139 7 2 148 285 540414979 540414842 4.460000e-49 206.0
18 TraesCS2A01G374300 chr1A 89.764 127 11 1 1 125 521327094 521327220 9.800000e-36 161.0
19 TraesCS2A01G374300 chr4A 90.196 153 13 2 133 284 428261671 428261520 7.470000e-47 198.0
20 TraesCS2A01G374300 chr4A 90.845 142 12 1 146 287 6479810 6479670 4.500000e-44 189.0
21 TraesCS2A01G374300 chr4A 91.270 126 9 1 1 124 640181684 640181809 1.630000e-38 171.0
22 TraesCS2A01G374300 chr4A 88.636 132 12 2 1 130 3451540 3451670 1.270000e-34 158.0
23 TraesCS2A01G374300 chr5A 91.489 141 12 0 140 280 680715802 680715942 9.660000e-46 195.0
24 TraesCS2A01G374300 chr5A 89.394 132 11 2 1 129 85777793 85777924 2.730000e-36 163.0
25 TraesCS2A01G374300 chrUn 90.071 141 14 0 140 280 1923034 1923174 2.090000e-42 183.0
26 TraesCS2A01G374300 chr7B 89.655 145 14 1 140 284 261997922 261998065 2.090000e-42 183.0
27 TraesCS2A01G374300 chr3A 88.636 132 12 2 1 129 42214352 42214221 1.270000e-34 158.0
28 TraesCS2A01G374300 chr3A 97.674 43 1 0 2473 2515 272565483 272565525 1.310000e-09 75.0
29 TraesCS2A01G374300 chr3A 88.333 60 5 2 2457 2515 657309627 657309685 1.700000e-08 71.3
30 TraesCS2A01G374300 chr3A 93.182 44 3 0 2471 2514 264044749 264044706 7.910000e-07 65.8
31 TraesCS2A01G374300 chr3A 100.000 33 0 0 985 1017 729579116 729579084 1.020000e-05 62.1
32 TraesCS2A01G374300 chr6A 95.918 49 2 0 2467 2515 558589498 558589450 2.820000e-11 80.5
33 TraesCS2A01G374300 chr6A 95.455 44 2 0 2471 2514 46689890 46689847 1.700000e-08 71.3
34 TraesCS2A01G374300 chr3D 95.238 42 1 1 979 1019 66143736 66143695 7.910000e-07 65.8
35 TraesCS2A01G374300 chr7D 100.000 31 0 0 987 1017 528881923 528881893 1.320000e-04 58.4
36 TraesCS2A01G374300 chr4B 97.059 34 1 0 2482 2515 541188926 541188959 1.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G374300 chr2A 617437550 617440962 3412 True 6303.000000 6303 100.000000 1 3413 1 chr2A.!!$R1 3412
1 TraesCS2A01G374300 chr2D 474891379 474898226 6847 True 1299.333333 2440 91.372333 369 3413 3 chr2D.!!$R1 3044
2 TraesCS2A01G374300 chr2B 555844922 555853830 8908 True 1263.666667 2085 91.443000 369 3413 3 chr2B.!!$R1 3044

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.179056 CACCCCCATCCATACGTGTC 60.179 60.0 0.00 0.0 0.0 3.67 F
329 330 0.179094 CGTGCGGGCAATAAGTAGGA 60.179 55.0 0.00 0.0 0.0 2.94 F
2003 8921 0.033796 CAGGGGCCATCACATTGACT 60.034 55.0 4.39 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 8901 0.033796 AGTCAATGTGATGGCCCCTG 60.034 55.0 0.00 0.0 0.0 4.45 R
2193 9111 0.250513 ATTCCTCGGTGCTGTTCTCC 59.749 55.0 0.00 0.0 0.0 3.71 R
3054 9980 0.238553 GAGAAGGCGCAAAGTCCAAC 59.761 55.0 10.83 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.947278 CGAAAACAACGCGCGGCA 62.947 61.111 35.22 0.00 0.00 5.69
34 35 2.428403 GAAAACAACGCGCGGCAT 60.428 55.556 35.22 17.23 0.00 4.40
35 36 1.154376 GAAAACAACGCGCGGCATA 60.154 52.632 35.22 0.00 0.00 3.14
36 37 1.392862 GAAAACAACGCGCGGCATAC 61.393 55.000 35.22 14.62 0.00 2.39
39 40 3.248887 CAACGCGCGGCATACGTA 61.249 61.111 35.22 0.00 46.52 3.57
40 41 2.952783 AACGCGCGGCATACGTAG 60.953 61.111 35.22 1.83 46.52 3.51
41 42 3.688475 AACGCGCGGCATACGTAGT 62.688 57.895 35.22 5.42 46.52 2.73
42 43 3.384399 CGCGCGGCATACGTAGTC 61.384 66.667 24.84 0.00 43.93 2.59
43 44 3.028590 GCGCGGCATACGTAGTCC 61.029 66.667 8.83 3.64 43.93 3.85
44 45 2.410060 CGCGGCATACGTAGTCCA 59.590 61.111 14.03 0.00 43.93 4.02
45 46 1.657487 CGCGGCATACGTAGTCCAG 60.657 63.158 14.03 8.94 43.93 3.86
46 47 1.949631 GCGGCATACGTAGTCCAGC 60.950 63.158 14.03 13.34 43.93 4.85
47 48 1.435925 CGGCATACGTAGTCCAGCA 59.564 57.895 14.03 0.00 43.93 4.41
48 49 0.870307 CGGCATACGTAGTCCAGCAC 60.870 60.000 14.03 2.74 43.93 4.40
49 50 0.870307 GGCATACGTAGTCCAGCACG 60.870 60.000 0.08 0.00 43.93 5.34
50 51 1.480219 GCATACGTAGTCCAGCACGC 61.480 60.000 0.08 0.00 43.93 5.34
51 52 1.063649 ATACGTAGTCCAGCACGCG 59.936 57.895 3.53 3.53 43.93 6.01
52 53 2.332362 ATACGTAGTCCAGCACGCGG 62.332 60.000 12.47 0.00 43.93 6.46
67 68 4.514569 CGGGCCGAAACGCAATCG 62.515 66.667 24.41 0.00 42.43 3.34
68 69 4.829518 GGGCCGAAACGCAATCGC 62.830 66.667 0.00 0.00 38.93 4.58
93 94 2.549633 GCATATTTGCTGCGTTCACT 57.450 45.000 0.35 0.00 45.77 3.41
94 95 2.867429 GCATATTTGCTGCGTTCACTT 58.133 42.857 0.35 0.00 45.77 3.16
95 96 2.848302 GCATATTTGCTGCGTTCACTTC 59.152 45.455 0.35 0.00 45.77 3.01
96 97 3.429085 CATATTTGCTGCGTTCACTTCC 58.571 45.455 0.00 0.00 0.00 3.46
97 98 0.238289 ATTTGCTGCGTTCACTTCCG 59.762 50.000 0.00 0.00 0.00 4.30
104 105 4.135493 GTTCACTTCCGCGCGCTC 62.135 66.667 30.48 0.59 0.00 5.03
119 120 4.803426 CTCGCTCGCACCTCCCAC 62.803 72.222 0.00 0.00 0.00 4.61
126 127 4.129148 GCACCTCCCACCCCCATC 62.129 72.222 0.00 0.00 0.00 3.51
127 128 3.420482 CACCTCCCACCCCCATCC 61.420 72.222 0.00 0.00 0.00 3.51
128 129 3.967024 ACCTCCCACCCCCATCCA 61.967 66.667 0.00 0.00 0.00 3.41
129 130 2.370123 CCTCCCACCCCCATCCAT 60.370 66.667 0.00 0.00 0.00 3.41
130 131 1.073008 CCTCCCACCCCCATCCATA 60.073 63.158 0.00 0.00 0.00 2.74
131 132 1.427072 CCTCCCACCCCCATCCATAC 61.427 65.000 0.00 0.00 0.00 2.39
132 133 1.768482 TCCCACCCCCATCCATACG 60.768 63.158 0.00 0.00 0.00 3.06
133 134 2.076184 CCCACCCCCATCCATACGT 61.076 63.158 0.00 0.00 0.00 3.57
134 135 1.148273 CCACCCCCATCCATACGTG 59.852 63.158 0.00 0.00 0.00 4.49
135 136 1.632018 CCACCCCCATCCATACGTGT 61.632 60.000 0.00 0.00 0.00 4.49
136 137 0.179056 CACCCCCATCCATACGTGTC 60.179 60.000 0.00 0.00 0.00 3.67
137 138 1.069090 CCCCCATCCATACGTGTCG 59.931 63.158 0.00 0.00 0.00 4.35
138 139 1.594293 CCCCATCCATACGTGTCGC 60.594 63.158 0.00 0.00 0.00 5.19
140 141 2.585869 CCATCCATACGTGTCGCGC 61.586 63.158 0.00 0.00 46.11 6.86
141 142 2.654085 ATCCATACGTGTCGCGCG 60.654 61.111 26.76 26.76 46.11 6.86
173 174 2.202285 CACGCGCGCTGCATTTTA 60.202 55.556 32.58 0.00 46.97 1.52
174 175 2.098298 ACGCGCGCTGCATTTTAG 59.902 55.556 32.58 12.54 46.97 1.85
175 176 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
180 181 2.485122 GCTGCATTTTAGCGCGGT 59.515 55.556 17.70 17.70 36.85 5.68
181 182 1.154035 GCTGCATTTTAGCGCGGTT 60.154 52.632 19.09 0.00 36.85 4.44
182 183 1.405469 GCTGCATTTTAGCGCGGTTG 61.405 55.000 19.09 10.09 36.85 3.77
183 184 1.405469 CTGCATTTTAGCGCGGTTGC 61.405 55.000 22.01 22.01 37.31 4.17
185 186 1.405469 GCATTTTAGCGCGGTTGCTG 61.405 55.000 19.09 10.63 46.70 4.41
186 187 0.798009 CATTTTAGCGCGGTTGCTGG 60.798 55.000 19.09 0.00 46.70 4.85
187 188 0.958382 ATTTTAGCGCGGTTGCTGGA 60.958 50.000 19.09 0.00 46.70 3.86
188 189 1.573829 TTTTAGCGCGGTTGCTGGAG 61.574 55.000 19.09 0.00 46.70 3.86
218 219 4.481112 GCCGCGCCAAACCAGATG 62.481 66.667 0.00 0.00 0.00 2.90
219 220 2.745884 CCGCGCCAAACCAGATGA 60.746 61.111 0.00 0.00 0.00 2.92
220 221 2.114670 CCGCGCCAAACCAGATGAT 61.115 57.895 0.00 0.00 0.00 2.45
221 222 1.063006 CGCGCCAAACCAGATGATG 59.937 57.895 0.00 0.00 0.00 3.07
230 231 3.009140 CAGATGATGGACGCACGC 58.991 61.111 0.00 0.00 0.00 5.34
231 232 1.520120 CAGATGATGGACGCACGCT 60.520 57.895 0.00 0.00 0.00 5.07
232 233 0.249031 CAGATGATGGACGCACGCTA 60.249 55.000 0.00 0.00 0.00 4.26
233 234 0.676184 AGATGATGGACGCACGCTAT 59.324 50.000 0.00 0.00 0.00 2.97
234 235 1.886542 AGATGATGGACGCACGCTATA 59.113 47.619 0.00 0.00 0.00 1.31
235 236 2.296190 AGATGATGGACGCACGCTATAA 59.704 45.455 0.00 0.00 0.00 0.98
236 237 1.847818 TGATGGACGCACGCTATAAC 58.152 50.000 0.00 0.00 0.00 1.89
237 238 1.407618 TGATGGACGCACGCTATAACT 59.592 47.619 0.00 0.00 0.00 2.24
238 239 1.787155 GATGGACGCACGCTATAACTG 59.213 52.381 0.00 0.00 0.00 3.16
239 240 0.528924 TGGACGCACGCTATAACTGT 59.471 50.000 0.00 0.00 0.00 3.55
240 241 1.067425 TGGACGCACGCTATAACTGTT 60.067 47.619 0.00 0.00 0.00 3.16
241 242 1.997606 GGACGCACGCTATAACTGTTT 59.002 47.619 0.00 0.00 0.00 2.83
242 243 2.414138 GGACGCACGCTATAACTGTTTT 59.586 45.455 0.00 0.00 0.00 2.43
243 244 3.120442 GGACGCACGCTATAACTGTTTTT 60.120 43.478 0.00 0.00 0.00 1.94
272 273 3.418913 CGTTCGGCGCATGTTGGA 61.419 61.111 10.83 0.00 0.00 3.53
273 274 2.480555 GTTCGGCGCATGTTGGAG 59.519 61.111 10.83 0.00 0.00 3.86
274 275 2.032634 GTTCGGCGCATGTTGGAGA 61.033 57.895 10.83 0.00 0.00 3.71
275 276 1.078497 TTCGGCGCATGTTGGAGAT 60.078 52.632 10.83 0.00 0.00 2.75
276 277 1.368345 TTCGGCGCATGTTGGAGATG 61.368 55.000 10.83 0.00 0.00 2.90
277 278 2.410469 GGCGCATGTTGGAGATGC 59.590 61.111 10.83 0.00 42.41 3.91
278 279 2.117156 GGCGCATGTTGGAGATGCT 61.117 57.895 10.83 0.00 43.45 3.79
279 280 1.354506 GCGCATGTTGGAGATGCTC 59.645 57.895 0.30 0.00 43.45 4.26
280 281 1.640069 CGCATGTTGGAGATGCTCG 59.360 57.895 8.18 0.00 43.45 5.03
281 282 1.086067 CGCATGTTGGAGATGCTCGT 61.086 55.000 8.18 0.00 43.45 4.18
282 283 1.802508 CGCATGTTGGAGATGCTCGTA 60.803 52.381 8.18 0.00 43.45 3.43
283 284 2.279741 GCATGTTGGAGATGCTCGTAA 58.720 47.619 3.13 0.00 42.52 3.18
284 285 2.286294 GCATGTTGGAGATGCTCGTAAG 59.714 50.000 3.13 0.00 42.52 2.34
285 286 2.672961 TGTTGGAGATGCTCGTAAGG 57.327 50.000 0.00 0.00 38.47 2.69
286 287 1.207089 TGTTGGAGATGCTCGTAAGGG 59.793 52.381 0.00 0.00 44.72 3.95
287 288 1.207329 GTTGGAGATGCTCGTAAGGGT 59.793 52.381 0.00 0.00 42.80 4.34
288 289 2.429610 GTTGGAGATGCTCGTAAGGGTA 59.570 50.000 0.00 0.00 42.80 3.69
289 290 2.029623 TGGAGATGCTCGTAAGGGTAC 58.970 52.381 0.00 0.00 42.80 3.34
290 291 2.308690 GGAGATGCTCGTAAGGGTACT 58.691 52.381 0.00 0.00 42.80 2.73
291 292 2.694109 GGAGATGCTCGTAAGGGTACTT 59.306 50.000 0.00 0.00 42.80 2.24
292 293 3.243468 GGAGATGCTCGTAAGGGTACTTC 60.243 52.174 0.00 0.00 42.80 3.01
293 294 2.358267 AGATGCTCGTAAGGGTACTTCG 59.642 50.000 0.00 0.00 42.80 3.79
294 295 1.538047 TGCTCGTAAGGGTACTTCGT 58.462 50.000 0.00 0.00 42.80 3.85
295 296 1.200716 TGCTCGTAAGGGTACTTCGTG 59.799 52.381 0.00 0.00 42.80 4.35
296 297 1.200948 GCTCGTAAGGGTACTTCGTGT 59.799 52.381 0.00 0.00 42.80 4.49
297 298 2.352127 GCTCGTAAGGGTACTTCGTGTT 60.352 50.000 0.00 0.00 42.80 3.32
298 299 3.496155 CTCGTAAGGGTACTTCGTGTTC 58.504 50.000 0.00 0.00 38.14 3.18
299 300 2.095768 TCGTAAGGGTACTTCGTGTTCG 60.096 50.000 0.00 0.00 38.14 3.95
300 301 2.095768 CGTAAGGGTACTTCGTGTTCGA 60.096 50.000 0.00 0.00 44.66 3.71
301 302 2.719426 AAGGGTACTTCGTGTTCGAG 57.281 50.000 0.00 0.00 46.81 4.04
302 303 1.613836 AGGGTACTTCGTGTTCGAGT 58.386 50.000 0.00 0.00 46.81 4.18
303 304 1.538950 AGGGTACTTCGTGTTCGAGTC 59.461 52.381 0.00 0.00 46.81 3.36
304 305 1.402062 GGGTACTTCGTGTTCGAGTCC 60.402 57.143 0.00 0.00 46.81 3.85
305 306 1.267806 GGTACTTCGTGTTCGAGTCCA 59.732 52.381 0.00 0.00 46.81 4.02
306 307 2.582687 GTACTTCGTGTTCGAGTCCAG 58.417 52.381 0.00 0.00 46.81 3.86
307 308 0.318784 ACTTCGTGTTCGAGTCCAGC 60.319 55.000 0.00 0.00 46.81 4.85
308 309 0.318699 CTTCGTGTTCGAGTCCAGCA 60.319 55.000 0.00 0.00 46.81 4.41
309 310 0.596600 TTCGTGTTCGAGTCCAGCAC 60.597 55.000 0.00 0.00 46.81 4.40
310 311 2.022129 CGTGTTCGAGTCCAGCACC 61.022 63.158 0.00 0.00 39.71 5.01
311 312 2.022129 GTGTTCGAGTCCAGCACCG 61.022 63.158 0.00 0.00 0.00 4.94
312 313 2.338984 GTTCGAGTCCAGCACCGT 59.661 61.111 0.00 0.00 0.00 4.83
313 314 2.022129 GTTCGAGTCCAGCACCGTG 61.022 63.158 0.00 0.00 0.00 4.94
314 315 3.858868 TTCGAGTCCAGCACCGTGC 62.859 63.158 16.04 16.04 45.46 5.34
323 324 3.436055 GCACCGTGCGGGCAATAA 61.436 61.111 15.44 0.00 40.62 1.40
324 325 2.791256 CACCGTGCGGGCAATAAG 59.209 61.111 15.44 0.00 40.62 1.73
325 326 2.038269 CACCGTGCGGGCAATAAGT 61.038 57.895 15.44 0.00 40.62 2.24
326 327 0.741574 CACCGTGCGGGCAATAAGTA 60.742 55.000 15.44 0.00 40.62 2.24
327 328 0.461339 ACCGTGCGGGCAATAAGTAG 60.461 55.000 15.44 0.00 40.62 2.57
328 329 1.157870 CCGTGCGGGCAATAAGTAGG 61.158 60.000 2.15 0.00 0.00 3.18
329 330 0.179094 CGTGCGGGCAATAAGTAGGA 60.179 55.000 0.00 0.00 0.00 2.94
330 331 1.583054 GTGCGGGCAATAAGTAGGAG 58.417 55.000 0.00 0.00 0.00 3.69
331 332 1.134491 GTGCGGGCAATAAGTAGGAGT 60.134 52.381 0.00 0.00 0.00 3.85
332 333 2.101917 GTGCGGGCAATAAGTAGGAGTA 59.898 50.000 0.00 0.00 0.00 2.59
333 334 2.364324 TGCGGGCAATAAGTAGGAGTAG 59.636 50.000 0.00 0.00 0.00 2.57
334 335 2.364647 GCGGGCAATAAGTAGGAGTAGT 59.635 50.000 0.00 0.00 0.00 2.73
335 336 3.552478 GCGGGCAATAAGTAGGAGTAGTC 60.552 52.174 0.00 0.00 0.00 2.59
336 337 3.890147 CGGGCAATAAGTAGGAGTAGTCT 59.110 47.826 0.00 0.00 0.00 3.24
337 338 5.068636 CGGGCAATAAGTAGGAGTAGTCTA 58.931 45.833 0.00 0.00 0.00 2.59
338 339 5.181622 CGGGCAATAAGTAGGAGTAGTCTAG 59.818 48.000 0.00 0.00 0.00 2.43
339 340 6.305411 GGGCAATAAGTAGGAGTAGTCTAGA 58.695 44.000 0.00 0.00 0.00 2.43
340 341 6.949463 GGGCAATAAGTAGGAGTAGTCTAGAT 59.051 42.308 0.00 0.00 0.00 1.98
341 342 8.108364 GGGCAATAAGTAGGAGTAGTCTAGATA 58.892 40.741 0.00 0.00 0.00 1.98
342 343 8.949177 GGCAATAAGTAGGAGTAGTCTAGATAC 58.051 40.741 0.00 0.20 0.00 2.24
343 344 8.949177 GCAATAAGTAGGAGTAGTCTAGATACC 58.051 40.741 0.00 0.00 0.00 2.73
347 348 6.536447 AGTAGGAGTAGTCTAGATACCAAGC 58.464 44.000 0.00 0.00 0.00 4.01
348 349 4.732065 AGGAGTAGTCTAGATACCAAGCC 58.268 47.826 0.00 0.89 0.00 4.35
349 350 4.417518 AGGAGTAGTCTAGATACCAAGCCT 59.582 45.833 0.00 2.85 0.00 4.58
350 351 4.763279 GGAGTAGTCTAGATACCAAGCCTC 59.237 50.000 0.00 0.00 0.00 4.70
351 352 4.391155 AGTAGTCTAGATACCAAGCCTCG 58.609 47.826 0.00 0.00 0.00 4.63
352 353 3.579534 AGTCTAGATACCAAGCCTCGA 57.420 47.619 0.00 0.00 0.00 4.04
353 354 3.215975 AGTCTAGATACCAAGCCTCGAC 58.784 50.000 0.00 0.00 0.00 4.20
354 355 3.117813 AGTCTAGATACCAAGCCTCGACT 60.118 47.826 0.00 0.00 31.00 4.18
355 356 4.102838 AGTCTAGATACCAAGCCTCGACTA 59.897 45.833 0.00 0.00 33.16 2.59
356 357 4.453136 GTCTAGATACCAAGCCTCGACTAG 59.547 50.000 0.00 0.00 0.00 2.57
357 358 1.957877 AGATACCAAGCCTCGACTAGC 59.042 52.381 0.00 0.00 0.00 3.42
358 359 0.669077 ATACCAAGCCTCGACTAGCG 59.331 55.000 0.00 0.00 42.69 4.26
359 360 2.001361 TACCAAGCCTCGACTAGCGC 62.001 60.000 0.00 0.00 40.61 5.92
360 361 2.951745 CAAGCCTCGACTAGCGCG 60.952 66.667 0.00 0.00 40.61 6.86
361 362 4.856607 AAGCCTCGACTAGCGCGC 62.857 66.667 26.66 26.66 40.61 6.86
390 391 0.471780 TGTCTTGGTCTGAGCTCCCA 60.472 55.000 12.15 8.78 0.00 4.37
417 418 2.900838 GGCGACTCGATCCTCCGA 60.901 66.667 1.63 0.00 37.03 4.55
521 522 4.681978 GCAGTTCCCGTGGCTCGT 62.682 66.667 8.25 0.00 37.94 4.18
556 557 0.521735 CTTTTACAGCTTGCCCGACC 59.478 55.000 0.00 0.00 0.00 4.79
621 622 4.478371 CCGCATGCCCAGAGCTCA 62.478 66.667 17.77 0.00 44.23 4.26
622 623 2.437180 CGCATGCCCAGAGCTCAA 60.437 61.111 17.77 0.00 44.23 3.02
639 5226 7.490402 CAGAGCTCAAAAGAAACAAAGAAACAT 59.510 33.333 17.77 0.00 0.00 2.71
640 5227 7.490402 AGAGCTCAAAAGAAACAAAGAAACATG 59.510 33.333 17.77 0.00 0.00 3.21
660 5247 6.840527 ACATGAAAAATCCAATGAAAACCCT 58.159 32.000 0.00 0.00 0.00 4.34
673 5436 9.942850 CCAATGAAAACCCTAATAAGAAACAAT 57.057 29.630 0.00 0.00 0.00 2.71
689 5452 8.628630 AAGAAACAATGGAAACCAAAGAAAAA 57.371 26.923 0.00 0.00 36.95 1.94
823 5630 7.083875 ACAAACAGAAATCAAAGAAACTCGA 57.916 32.000 0.00 0.00 0.00 4.04
826 5633 8.526681 CAAACAGAAATCAAAGAAACTCGAAAG 58.473 33.333 0.00 0.00 0.00 2.62
834 5641 6.915349 TCAAAGAAACTCGAAAGGAAAAACA 58.085 32.000 0.00 0.00 0.00 2.83
836 5643 7.540745 TCAAAGAAACTCGAAAGGAAAAACAAG 59.459 33.333 0.00 0.00 0.00 3.16
840 5647 8.251026 AGAAACTCGAAAGGAAAAACAAGAAAT 58.749 29.630 0.00 0.00 0.00 2.17
847 5654 9.986833 CGAAAGGAAAAACAAGAAATTCAAAAT 57.013 25.926 0.00 0.00 0.00 1.82
1143 5960 1.271054 GCTATCCATGGCCACCTACTG 60.271 57.143 8.16 0.66 0.00 2.74
1271 6088 1.797537 GCCGTGCTGATGCGTTTTC 60.798 57.895 0.00 0.00 43.34 2.29
1332 6154 2.436292 CTCTCCCTGTGCAGCTGC 60.436 66.667 31.89 31.89 42.50 5.25
1448 6270 3.191371 GGTAAATTCTGTGTGAAGCTGGG 59.809 47.826 0.00 0.00 38.18 4.45
1476 6304 1.061546 GGGGTAGTGGAGTTGGTTCA 58.938 55.000 0.00 0.00 0.00 3.18
1485 6313 0.804989 GAGTTGGTTCATCGGCTTGG 59.195 55.000 0.00 0.00 0.00 3.61
1491 6319 0.729140 GTTCATCGGCTTGGCGTTTG 60.729 55.000 15.70 14.01 0.00 2.93
1521 6349 1.599542 GAGCATACGGTTCCTTGATGC 59.400 52.381 3.67 3.67 42.57 3.91
1524 6352 1.151777 ATACGGTTCCTTGATGCGCG 61.152 55.000 0.00 0.00 0.00 6.86
1536 6364 0.652592 GATGCGCGTGTTTGCTCTAT 59.347 50.000 6.97 0.00 0.00 1.98
1537 6365 1.062587 GATGCGCGTGTTTGCTCTATT 59.937 47.619 6.97 0.00 0.00 1.73
1539 6367 1.658596 TGCGCGTGTTTGCTCTATTAG 59.341 47.619 8.43 0.00 0.00 1.73
1551 6379 8.946085 TGTTTGCTCTATTAGATTGTTAACTGG 58.054 33.333 7.22 0.00 0.00 4.00
1553 6381 6.055588 TGCTCTATTAGATTGTTAACTGGCC 58.944 40.000 7.22 0.00 0.00 5.36
1554 6382 6.055588 GCTCTATTAGATTGTTAACTGGCCA 58.944 40.000 4.71 4.71 0.00 5.36
1573 6401 6.240894 TGGCCATTAGATTTAGATCCATCAC 58.759 40.000 0.00 0.00 32.44 3.06
1592 6420 7.510685 TCCATCACTTATGCTTAGGTAATCTCT 59.489 37.037 0.00 0.00 33.92 3.10
1608 6438 6.019479 GGTAATCTCTCGTAGTTGCAGATTTG 60.019 42.308 0.00 0.00 35.77 2.32
1618 6449 6.678663 CGTAGTTGCAGATTTGTAGAATTTCG 59.321 38.462 0.00 0.00 0.00 3.46
1623 6454 5.931724 TGCAGATTTGTAGAATTTCGAGTCA 59.068 36.000 0.00 0.00 0.00 3.41
1626 6457 7.201556 GCAGATTTGTAGAATTTCGAGTCATCA 60.202 37.037 0.00 0.00 0.00 3.07
1633 6464 7.872993 TGTAGAATTTCGAGTCATCAAAGAGTT 59.127 33.333 0.00 0.00 0.00 3.01
1640 6471 4.390297 CGAGTCATCAAAGAGTTCCTTTCC 59.610 45.833 0.00 0.00 42.88 3.13
1645 6476 2.174639 TCAAAGAGTTCCTTTCCTGGCA 59.825 45.455 0.00 0.00 42.88 4.92
1647 6478 2.797177 AGAGTTCCTTTCCTGGCATC 57.203 50.000 0.00 0.00 0.00 3.91
1648 6479 2.273619 AGAGTTCCTTTCCTGGCATCT 58.726 47.619 0.00 0.00 0.00 2.90
1656 6487 4.590647 TCCTTTCCTGGCATCTGTATAGAG 59.409 45.833 0.00 0.00 36.14 2.43
1660 6491 5.066913 TCCTGGCATCTGTATAGAGAAGA 57.933 43.478 3.36 0.00 36.14 2.87
1662 6493 5.076182 CCTGGCATCTGTATAGAGAAGAGA 58.924 45.833 3.36 0.00 36.14 3.10
1679 6510 9.323985 AGAGAAGAGATAGTTTATCACAATTGC 57.676 33.333 5.05 0.00 37.65 3.56
1696 6527 7.550551 TCACAATTGCTTAGTTCTCTTATCCAG 59.449 37.037 5.05 0.00 0.00 3.86
1698 6529 7.550906 ACAATTGCTTAGTTCTCTTATCCAGAC 59.449 37.037 5.05 0.00 0.00 3.51
1700 6531 6.605471 TGCTTAGTTCTCTTATCCAGACAA 57.395 37.500 0.00 0.00 0.00 3.18
1701 6532 7.187824 TGCTTAGTTCTCTTATCCAGACAAT 57.812 36.000 0.00 0.00 0.00 2.71
1703 6534 8.758829 TGCTTAGTTCTCTTATCCAGACAATAA 58.241 33.333 0.00 0.00 0.00 1.40
1725 6556 5.643339 ATTCGCTACTTCGATGTTCATTC 57.357 39.130 9.44 0.00 38.37 2.67
1731 6562 5.348724 GCTACTTCGATGTTCATTCAGTGAA 59.651 40.000 8.27 8.27 44.36 3.18
1737 6568 3.490439 TGTTCATTCAGTGAAGGAGCA 57.510 42.857 26.49 26.49 46.99 4.26
1747 6578 4.889409 TCAGTGAAGGAGCACAAAAGAATT 59.111 37.500 0.00 0.00 41.19 2.17
1749 6580 4.889409 AGTGAAGGAGCACAAAAGAATTGA 59.111 37.500 0.00 0.00 41.19 2.57
1750 6581 4.978580 GTGAAGGAGCACAAAAGAATTGAC 59.021 41.667 0.00 0.00 38.63 3.18
1761 6592 7.209475 CACAAAAGAATTGACACATAGGGTTT 58.791 34.615 0.00 0.00 0.00 3.27
1791 6622 9.979270 CTTAACTGCAGTTGTTATTATCTTCTG 57.021 33.333 36.50 7.78 38.90 3.02
1792 6623 6.992063 ACTGCAGTTGTTATTATCTTCTGG 57.008 37.500 15.25 0.00 0.00 3.86
1793 6624 5.882557 ACTGCAGTTGTTATTATCTTCTGGG 59.117 40.000 15.25 0.00 0.00 4.45
1794 6625 5.815581 TGCAGTTGTTATTATCTTCTGGGT 58.184 37.500 0.00 0.00 0.00 4.51
1795 6626 5.647658 TGCAGTTGTTATTATCTTCTGGGTG 59.352 40.000 0.00 0.00 0.00 4.61
1796 6627 5.880332 GCAGTTGTTATTATCTTCTGGGTGA 59.120 40.000 0.00 0.00 0.00 4.02
1797 6628 6.374333 GCAGTTGTTATTATCTTCTGGGTGAA 59.626 38.462 0.00 0.00 0.00 3.18
1836 6679 5.880054 ACAACTTCCACTTATATGTGTGC 57.120 39.130 15.41 0.00 36.30 4.57
1837 6680 5.312895 ACAACTTCCACTTATATGTGTGCA 58.687 37.500 15.41 0.00 36.30 4.57
1849 6696 8.834465 ACTTATATGTGTGCATGATTCTCTTTC 58.166 33.333 0.00 0.00 36.58 2.62
1865 6712 7.421530 TTCTCTTTCTGTAGTAAATGTGTGC 57.578 36.000 0.00 0.00 0.00 4.57
1868 6719 7.385205 TCTCTTTCTGTAGTAAATGTGTGCTTC 59.615 37.037 0.00 0.00 0.00 3.86
1869 6720 6.426937 TCTTTCTGTAGTAAATGTGTGCTTCC 59.573 38.462 0.00 0.00 0.00 3.46
1888 8804 2.554032 TCCTAAAGTTCTTGCTTGCTGC 59.446 45.455 0.00 0.00 43.25 5.25
1893 8809 2.089980 AGTTCTTGCTTGCTGCCATAG 58.910 47.619 0.00 0.00 42.00 2.23
1903 8819 1.845791 TGCTGCCATAGAATCTCCCAA 59.154 47.619 0.00 0.00 0.00 4.12
1906 8822 3.686691 GCTGCCATAGAATCTCCCAACTT 60.687 47.826 0.00 0.00 0.00 2.66
1910 8826 5.369404 TGCCATAGAATCTCCCAACTTCATA 59.631 40.000 0.00 0.00 0.00 2.15
1927 8843 8.371699 CAACTTCATAAAATTTGGGGGTAGAAA 58.628 33.333 0.00 0.00 0.00 2.52
1932 8848 8.939932 TCATAAAATTTGGGGGTAGAAAGTTTT 58.060 29.630 0.00 0.00 33.05 2.43
1937 8853 3.057586 TGGGGGTAGAAAGTTTTGGAGA 58.942 45.455 0.00 0.00 0.00 3.71
1940 8856 4.523173 GGGGGTAGAAAGTTTTGGAGAAAG 59.477 45.833 0.00 0.00 0.00 2.62
1941 8857 5.138276 GGGGTAGAAAGTTTTGGAGAAAGT 58.862 41.667 0.00 0.00 0.00 2.66
1952 8868 6.147656 AGTTTTGGAGAAAGTGCAAACAAAAG 59.852 34.615 0.00 0.00 45.28 2.27
1954 8870 3.513515 TGGAGAAAGTGCAAACAAAAGGT 59.486 39.130 0.00 0.00 0.00 3.50
1963 8879 9.660180 AAAGTGCAAACAAAAGGTAGAAAATTA 57.340 25.926 0.00 0.00 0.00 1.40
1964 8880 9.660180 AAGTGCAAACAAAAGGTAGAAAATTAA 57.340 25.926 0.00 0.00 0.00 1.40
1989 8906 6.100424 AGGATGACTAGTTAGAATTTCAGGGG 59.900 42.308 0.00 0.00 0.00 4.79
1990 8907 5.099042 TGACTAGTTAGAATTTCAGGGGC 57.901 43.478 0.00 0.00 0.00 5.80
2003 8921 0.033796 CAGGGGCCATCACATTGACT 60.034 55.000 4.39 0.00 0.00 3.41
2013 8931 6.593382 GGCCATCACATTGACTATAATCTCTC 59.407 42.308 0.00 0.00 0.00 3.20
2016 8934 8.084684 CCATCACATTGACTATAATCTCTCGAA 58.915 37.037 0.00 0.00 0.00 3.71
2031 8949 7.730364 ATCTCTCGAATTTACAGTTTGTTGT 57.270 32.000 0.00 0.00 35.09 3.32
2034 8952 7.908082 TCTCTCGAATTTACAGTTTGTTGTTTG 59.092 33.333 0.00 0.00 32.56 2.93
2037 8955 8.164058 TCGAATTTACAGTTTGTTGTTTGTTC 57.836 30.769 0.00 0.00 32.56 3.18
2049 8967 7.840342 TTGTTGTTTGTTCAAGCAATAACAT 57.160 28.000 15.34 0.00 36.57 2.71
2050 8968 8.932945 TTGTTGTTTGTTCAAGCAATAACATA 57.067 26.923 15.34 0.00 36.57 2.29
2055 8973 8.976471 TGTTTGTTCAAGCAATAACATATGTTG 58.024 29.630 27.62 15.18 38.90 3.33
2065 8983 7.961855 GCAATAACATATGTTGATGTTTTGCA 58.038 30.769 27.62 7.04 45.65 4.08
2071 8989 3.029320 TGTTGATGTTTTGCATGCCTC 57.971 42.857 16.68 3.46 38.06 4.70
2074 8992 1.068402 TGATGTTTTGCATGCCTCGTG 60.068 47.619 16.68 0.00 38.06 4.35
2075 8993 0.388907 ATGTTTTGCATGCCTCGTGC 60.389 50.000 16.68 4.20 45.53 5.34
2121 9039 1.508632 GCGTGTTTGCTGGTCTCTTA 58.491 50.000 0.00 0.00 0.00 2.10
2148 9066 3.729108 TGACCTGAATGAGGATCCTCTT 58.271 45.455 35.84 28.91 46.33 2.85
2193 9111 2.699846 AGAGGCTTCTGGAATAGCTGAG 59.300 50.000 0.00 0.00 37.54 3.35
2199 9117 4.692228 CTTCTGGAATAGCTGAGGAGAAC 58.308 47.826 0.00 0.00 0.00 3.01
2244 9162 1.753073 GCTCAAAATGATGGACCCCAG 59.247 52.381 0.00 0.00 36.75 4.45
2584 9503 9.914923 GAATACAAATCCAACAACAAGTTTTTC 57.085 29.630 0.00 0.00 38.74 2.29
2641 9560 4.667262 TGGTCAAAATTCGACACAAAGTG 58.333 39.130 9.47 0.00 39.75 3.16
2665 9584 2.489040 GGCACCAATAAACCCGGAG 58.511 57.895 0.73 0.00 0.00 4.63
2690 9609 5.880887 GGAGGAAGTAAGAAATTACTGTGGG 59.119 44.000 1.65 0.00 37.76 4.61
2706 9625 3.499338 TGTGGGCAGAACAAATTGAGAT 58.501 40.909 0.00 0.00 0.00 2.75
2712 9631 5.105635 GGGCAGAACAAATTGAGATGATTGA 60.106 40.000 0.00 0.00 0.00 2.57
2715 9634 7.148689 GGCAGAACAAATTGAGATGATTGAAAC 60.149 37.037 0.00 0.00 0.00 2.78
2724 9643 6.012658 TGAGATGATTGAAACGGAAAAAGG 57.987 37.500 0.00 0.00 0.00 3.11
2729 9648 5.967088 TGATTGAAACGGAAAAAGGAAACA 58.033 33.333 0.00 0.00 0.00 2.83
2745 9664 5.688807 AGGAAACATTCACCCATAGAGATG 58.311 41.667 0.00 0.00 0.00 2.90
2766 9685 8.206325 AGATGCATACTTCTATTTGTGAGTTG 57.794 34.615 0.00 0.00 0.00 3.16
2771 9690 7.333423 GCATACTTCTATTTGTGAGTTGTGGTA 59.667 37.037 0.00 0.00 0.00 3.25
2803 9722 5.118203 GCAGTTCTAAGAAATGCAGCTTTTG 59.882 40.000 10.86 0.00 36.88 2.44
2830 9749 3.389329 TCTGCTGAGACTTCATTATCCCC 59.611 47.826 0.00 0.00 31.68 4.81
2940 9859 3.244033 AGCCAGAGAGTGAATTTCTCG 57.756 47.619 0.00 0.00 44.53 4.04
2944 9863 1.902508 AGAGAGTGAATTTCTCGGCCA 59.097 47.619 2.24 0.00 44.53 5.36
2949 9868 3.274288 AGTGAATTTCTCGGCCATTCTC 58.726 45.455 2.24 5.17 0.00 2.87
2999 9924 7.109006 ACTTCGCTTATTTTCAATGCTTTTG 57.891 32.000 0.00 0.00 0.00 2.44
3027 9952 5.689068 CCTTTCTTCTCTTTGTGTTTGCATC 59.311 40.000 0.00 0.00 0.00 3.91
3066 9992 4.481930 TTCATTGTAGTTGGACTTTGCG 57.518 40.909 0.00 0.00 0.00 4.85
3092 10018 5.084818 TCTCGGCATTCTTCTTGTAATGA 57.915 39.130 0.00 0.00 35.53 2.57
3104 10030 8.394971 TCTTCTTGTAATGAAACATGACACAT 57.605 30.769 0.00 0.00 34.40 3.21
3109 10035 6.151004 TGTAATGAAACATGACACATGCTTG 58.849 36.000 0.00 0.00 0.00 4.01
3122 10048 4.030452 GCTTGGTGGTGTGCTCGC 62.030 66.667 0.00 0.00 0.00 5.03
3128 10054 1.574428 GTGGTGTGCTCGCGAAAAT 59.426 52.632 11.33 0.00 0.00 1.82
3156 10082 4.157289 GCAAGATAGCCATATGAACATGGG 59.843 45.833 3.65 1.09 44.89 4.00
3195 10121 2.185387 ACGTGTAGTAATTCTGGCCCT 58.815 47.619 0.00 0.00 0.00 5.19
3214 10140 4.107622 CCCTGCTTTCATGCTATTTTTCG 58.892 43.478 0.00 0.00 0.00 3.46
3289 10215 0.326264 AGGACAGAACCCATCACAGC 59.674 55.000 0.00 0.00 0.00 4.40
3305 10231 4.122046 TCACAGCGATTGATGGATAACTG 58.878 43.478 2.72 0.00 35.27 3.16
3318 10244 7.292319 TGATGGATAACTGGATGATCAAACAT 58.708 34.615 0.00 0.00 0.00 2.71
3336 10262 2.291800 ACATAGCCATGGCCTTTCAGTT 60.292 45.455 33.14 14.54 43.17 3.16
3337 10263 3.053693 ACATAGCCATGGCCTTTCAGTTA 60.054 43.478 33.14 16.35 43.17 2.24
3364 10290 3.060339 GCACTTTCCTGTTCAATTTTGCG 60.060 43.478 0.00 0.00 0.00 4.85
3365 10291 3.060339 CACTTTCCTGTTCAATTTTGCGC 60.060 43.478 0.00 0.00 0.00 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.819902 TATGCCGCGCGTTGTTTTCG 62.820 55.000 29.95 11.72 0.00 3.46
17 18 1.154376 TATGCCGCGCGTTGTTTTC 60.154 52.632 29.95 8.66 0.00 2.29
18 19 1.441349 GTATGCCGCGCGTTGTTTT 60.441 52.632 29.95 9.46 0.00 2.43
19 20 2.174835 GTATGCCGCGCGTTGTTT 59.825 55.556 29.95 10.93 0.00 2.83
20 21 4.142047 CGTATGCCGCGCGTTGTT 62.142 61.111 29.95 12.79 0.00 2.83
21 22 3.967833 TACGTATGCCGCGCGTTGT 62.968 57.895 29.95 18.18 41.42 3.32
22 23 3.192475 CTACGTATGCCGCGCGTTG 62.192 63.158 29.95 15.79 41.42 4.10
23 24 2.952783 CTACGTATGCCGCGCGTT 60.953 61.111 29.95 15.46 41.42 4.84
24 25 4.183686 ACTACGTATGCCGCGCGT 62.184 61.111 29.95 13.36 41.42 6.01
25 26 3.384399 GACTACGTATGCCGCGCG 61.384 66.667 25.67 25.67 41.42 6.86
26 27 3.028590 GGACTACGTATGCCGCGC 61.029 66.667 0.00 0.00 41.42 6.86
27 28 1.657487 CTGGACTACGTATGCCGCG 60.657 63.158 0.00 0.00 41.42 6.46
28 29 1.949631 GCTGGACTACGTATGCCGC 60.950 63.158 0.00 5.51 41.42 6.53
29 30 0.870307 GTGCTGGACTACGTATGCCG 60.870 60.000 0.00 0.00 44.03 5.69
30 31 0.870307 CGTGCTGGACTACGTATGCC 60.870 60.000 0.00 1.02 35.70 4.40
31 32 1.480219 GCGTGCTGGACTACGTATGC 61.480 60.000 0.00 0.00 41.98 3.14
32 33 1.200474 CGCGTGCTGGACTACGTATG 61.200 60.000 0.00 0.00 41.98 2.39
33 34 1.063649 CGCGTGCTGGACTACGTAT 59.936 57.895 0.00 0.00 41.98 3.06
34 35 2.481919 CGCGTGCTGGACTACGTA 59.518 61.111 0.00 0.00 41.98 3.57
35 36 4.415332 CCGCGTGCTGGACTACGT 62.415 66.667 4.92 0.00 41.98 3.57
50 51 4.514569 CGATTGCGTTTCGGCCCG 62.515 66.667 0.00 0.00 33.05 6.13
51 52 4.829518 GCGATTGCGTTTCGGCCC 62.830 66.667 0.00 0.00 40.36 5.80
75 76 3.429085 GGAAGTGAACGCAGCAAATATG 58.571 45.455 0.00 0.00 0.00 1.78
76 77 2.095853 CGGAAGTGAACGCAGCAAATAT 59.904 45.455 0.00 0.00 0.00 1.28
77 78 1.463056 CGGAAGTGAACGCAGCAAATA 59.537 47.619 0.00 0.00 0.00 1.40
78 79 0.238289 CGGAAGTGAACGCAGCAAAT 59.762 50.000 0.00 0.00 0.00 2.32
79 80 1.646540 CGGAAGTGAACGCAGCAAA 59.353 52.632 0.00 0.00 0.00 3.68
80 81 3.329231 CGGAAGTGAACGCAGCAA 58.671 55.556 0.00 0.00 0.00 3.91
87 88 4.135493 GAGCGCGCGGAAGTGAAC 62.135 66.667 33.06 12.08 46.66 3.18
102 103 4.803426 GTGGGAGGTGCGAGCGAG 62.803 72.222 0.00 0.00 0.00 5.03
109 110 4.129148 GATGGGGGTGGGAGGTGC 62.129 72.222 0.00 0.00 0.00 5.01
110 111 3.420482 GGATGGGGGTGGGAGGTG 61.420 72.222 0.00 0.00 0.00 4.00
111 112 1.920395 TATGGATGGGGGTGGGAGGT 61.920 60.000 0.00 0.00 0.00 3.85
112 113 1.073008 TATGGATGGGGGTGGGAGG 60.073 63.158 0.00 0.00 0.00 4.30
113 114 1.768684 CGTATGGATGGGGGTGGGAG 61.769 65.000 0.00 0.00 0.00 4.30
114 115 1.768482 CGTATGGATGGGGGTGGGA 60.768 63.158 0.00 0.00 0.00 4.37
115 116 2.076184 ACGTATGGATGGGGGTGGG 61.076 63.158 0.00 0.00 0.00 4.61
116 117 1.148273 CACGTATGGATGGGGGTGG 59.852 63.158 0.00 0.00 0.00 4.61
117 118 0.179056 GACACGTATGGATGGGGGTG 60.179 60.000 0.00 0.00 0.00 4.61
118 119 1.682451 CGACACGTATGGATGGGGGT 61.682 60.000 0.00 0.00 0.00 4.95
119 120 1.069090 CGACACGTATGGATGGGGG 59.931 63.158 0.00 0.00 0.00 5.40
120 121 1.594293 GCGACACGTATGGATGGGG 60.594 63.158 0.00 0.00 0.00 4.96
121 122 1.949133 CGCGACACGTATGGATGGG 60.949 63.158 0.00 0.00 36.87 4.00
122 123 2.585869 GCGCGACACGTATGGATGG 61.586 63.158 12.10 0.00 46.11 3.51
123 124 2.916556 CGCGCGACACGTATGGATG 61.917 63.158 28.94 0.00 46.11 3.51
124 125 2.654085 CGCGCGACACGTATGGAT 60.654 61.111 28.94 0.00 46.11 3.41
156 157 2.202285 TAAAATGCAGCGCGCGTG 60.202 55.556 32.35 26.47 46.97 5.34
157 158 2.098298 CTAAAATGCAGCGCGCGT 59.902 55.556 32.35 15.53 46.97 6.01
158 159 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
163 164 1.154035 AACCGCGCTAAAATGCAGC 60.154 52.632 5.56 0.00 35.61 5.25
164 165 1.405469 GCAACCGCGCTAAAATGCAG 61.405 55.000 5.56 0.00 34.10 4.41
165 166 1.443533 GCAACCGCGCTAAAATGCA 60.444 52.632 5.56 0.00 34.10 3.96
166 167 1.154035 AGCAACCGCGCTAAAATGC 60.154 52.632 5.56 9.06 45.49 3.56
167 168 0.798009 CCAGCAACCGCGCTAAAATG 60.798 55.000 5.56 0.00 45.49 2.32
168 169 0.958382 TCCAGCAACCGCGCTAAAAT 60.958 50.000 5.56 0.00 45.49 1.82
169 170 1.573829 CTCCAGCAACCGCGCTAAAA 61.574 55.000 5.56 0.00 45.49 1.52
170 171 2.031314 TCCAGCAACCGCGCTAAA 59.969 55.556 5.56 0.00 45.49 1.85
171 172 2.434185 CTCCAGCAACCGCGCTAA 60.434 61.111 5.56 0.00 45.49 3.09
201 202 4.481112 CATCTGGTTTGGCGCGGC 62.481 66.667 27.61 27.61 0.00 6.53
202 203 2.114670 ATCATCTGGTTTGGCGCGG 61.115 57.895 8.83 0.00 0.00 6.46
203 204 1.063006 CATCATCTGGTTTGGCGCG 59.937 57.895 0.00 0.00 0.00 6.86
204 205 1.031571 TCCATCATCTGGTTTGGCGC 61.032 55.000 0.00 0.00 46.08 6.53
205 206 0.734889 GTCCATCATCTGGTTTGGCG 59.265 55.000 0.00 0.00 46.08 5.69
206 207 0.734889 CGTCCATCATCTGGTTTGGC 59.265 55.000 0.00 0.00 46.08 4.52
207 208 0.734889 GCGTCCATCATCTGGTTTGG 59.265 55.000 0.00 0.00 46.08 3.28
208 209 1.131126 GTGCGTCCATCATCTGGTTTG 59.869 52.381 0.00 0.00 46.08 2.93
209 210 1.453155 GTGCGTCCATCATCTGGTTT 58.547 50.000 0.00 0.00 46.08 3.27
210 211 0.740868 CGTGCGTCCATCATCTGGTT 60.741 55.000 0.00 0.00 46.08 3.67
211 212 1.153568 CGTGCGTCCATCATCTGGT 60.154 57.895 0.00 0.00 46.08 4.00
213 214 0.249031 TAGCGTGCGTCCATCATCTG 60.249 55.000 0.00 0.00 0.00 2.90
214 215 0.676184 ATAGCGTGCGTCCATCATCT 59.324 50.000 0.00 0.00 0.00 2.90
215 216 2.347697 TATAGCGTGCGTCCATCATC 57.652 50.000 0.00 0.00 0.00 2.92
216 217 2.035961 AGTTATAGCGTGCGTCCATCAT 59.964 45.455 0.00 0.00 0.00 2.45
217 218 1.407618 AGTTATAGCGTGCGTCCATCA 59.592 47.619 0.00 0.00 0.00 3.07
218 219 1.787155 CAGTTATAGCGTGCGTCCATC 59.213 52.381 0.00 0.00 0.00 3.51
219 220 1.136305 ACAGTTATAGCGTGCGTCCAT 59.864 47.619 0.00 0.00 0.00 3.41
220 221 0.528924 ACAGTTATAGCGTGCGTCCA 59.471 50.000 0.00 0.00 0.00 4.02
221 222 1.636988 AACAGTTATAGCGTGCGTCC 58.363 50.000 0.00 0.00 0.00 4.79
222 223 3.717350 AAAACAGTTATAGCGTGCGTC 57.283 42.857 0.00 0.00 0.00 5.19
256 257 1.369091 ATCTCCAACATGCGCCGAAC 61.369 55.000 4.18 0.00 0.00 3.95
257 258 1.078497 ATCTCCAACATGCGCCGAA 60.078 52.632 4.18 0.00 0.00 4.30
258 259 1.815003 CATCTCCAACATGCGCCGA 60.815 57.895 4.18 0.00 0.00 5.54
259 260 2.711311 CATCTCCAACATGCGCCG 59.289 61.111 4.18 0.00 0.00 6.46
260 261 2.410469 GCATCTCCAACATGCGCC 59.590 61.111 4.18 0.00 37.51 6.53
263 264 1.939974 TACGAGCATCTCCAACATGC 58.060 50.000 0.00 0.00 46.05 4.06
264 265 2.868583 CCTTACGAGCATCTCCAACATG 59.131 50.000 0.00 0.00 0.00 3.21
265 266 2.158900 CCCTTACGAGCATCTCCAACAT 60.159 50.000 0.00 0.00 0.00 2.71
266 267 1.207089 CCCTTACGAGCATCTCCAACA 59.793 52.381 0.00 0.00 0.00 3.33
267 268 1.207329 ACCCTTACGAGCATCTCCAAC 59.793 52.381 0.00 0.00 0.00 3.77
268 269 1.568504 ACCCTTACGAGCATCTCCAA 58.431 50.000 0.00 0.00 0.00 3.53
269 270 2.029623 GTACCCTTACGAGCATCTCCA 58.970 52.381 0.00 0.00 0.00 3.86
270 271 2.308690 AGTACCCTTACGAGCATCTCC 58.691 52.381 0.00 0.00 32.93 3.71
271 272 3.548415 CGAAGTACCCTTACGAGCATCTC 60.548 52.174 0.00 0.00 32.93 2.75
272 273 2.358267 CGAAGTACCCTTACGAGCATCT 59.642 50.000 0.00 0.00 32.93 2.90
273 274 2.098770 ACGAAGTACCCTTACGAGCATC 59.901 50.000 0.00 0.00 41.94 3.91
274 275 2.097825 ACGAAGTACCCTTACGAGCAT 58.902 47.619 0.00 0.00 41.94 3.79
275 276 1.200716 CACGAAGTACCCTTACGAGCA 59.799 52.381 0.00 0.00 41.61 4.26
276 277 1.200948 ACACGAAGTACCCTTACGAGC 59.799 52.381 0.00 0.00 41.61 5.03
277 278 3.496155 GAACACGAAGTACCCTTACGAG 58.504 50.000 0.00 0.00 41.61 4.18
278 279 2.095768 CGAACACGAAGTACCCTTACGA 60.096 50.000 0.00 0.00 41.61 3.43
279 280 2.095768 TCGAACACGAAGTACCCTTACG 60.096 50.000 0.00 0.00 41.61 3.18
280 281 3.057946 ACTCGAACACGAAGTACCCTTAC 60.058 47.826 0.00 0.00 41.61 2.34
281 282 3.149196 ACTCGAACACGAAGTACCCTTA 58.851 45.455 0.00 0.00 41.61 2.69
282 283 1.959282 ACTCGAACACGAAGTACCCTT 59.041 47.619 0.00 0.00 41.61 3.95
283 284 1.538950 GACTCGAACACGAAGTACCCT 59.461 52.381 0.00 0.00 41.61 4.34
284 285 1.402062 GGACTCGAACACGAAGTACCC 60.402 57.143 0.00 0.00 41.61 3.69
285 286 1.267806 TGGACTCGAACACGAAGTACC 59.732 52.381 0.00 0.00 41.61 3.34
286 287 2.582687 CTGGACTCGAACACGAAGTAC 58.417 52.381 0.00 0.00 41.61 2.73
287 288 1.068748 GCTGGACTCGAACACGAAGTA 60.069 52.381 0.00 0.00 41.61 2.24
289 290 0.318699 TGCTGGACTCGAACACGAAG 60.319 55.000 0.00 0.00 35.63 3.79
290 291 0.596600 GTGCTGGACTCGAACACGAA 60.597 55.000 0.00 0.00 35.63 3.85
291 292 1.007734 GTGCTGGACTCGAACACGA 60.008 57.895 0.00 0.00 34.81 4.35
292 293 2.022129 GGTGCTGGACTCGAACACG 61.022 63.158 0.00 0.00 32.00 4.49
293 294 2.022129 CGGTGCTGGACTCGAACAC 61.022 63.158 0.00 0.00 0.00 3.32
294 295 2.338620 CGGTGCTGGACTCGAACA 59.661 61.111 0.00 0.00 0.00 3.18
295 296 2.022129 CACGGTGCTGGACTCGAAC 61.022 63.158 14.65 0.00 0.00 3.95
296 297 2.338620 CACGGTGCTGGACTCGAA 59.661 61.111 14.65 0.00 0.00 3.71
297 298 4.357947 GCACGGTGCTGGACTCGA 62.358 66.667 25.08 0.00 40.96 4.04
305 306 3.910914 TTATTGCCCGCACGGTGCT 62.911 57.895 28.42 12.87 42.25 4.40
306 307 3.395470 CTTATTGCCCGCACGGTGC 62.395 63.158 22.78 22.78 40.69 5.01
307 308 0.741574 TACTTATTGCCCGCACGGTG 60.742 55.000 8.49 3.15 0.00 4.94
308 309 0.461339 CTACTTATTGCCCGCACGGT 60.461 55.000 8.49 0.00 0.00 4.83
309 310 1.157870 CCTACTTATTGCCCGCACGG 61.158 60.000 1.02 1.02 0.00 4.94
310 311 0.179094 TCCTACTTATTGCCCGCACG 60.179 55.000 0.00 0.00 0.00 5.34
311 312 1.134491 ACTCCTACTTATTGCCCGCAC 60.134 52.381 0.00 0.00 0.00 5.34
312 313 1.200519 ACTCCTACTTATTGCCCGCA 58.799 50.000 0.00 0.00 0.00 5.69
313 314 2.364647 ACTACTCCTACTTATTGCCCGC 59.635 50.000 0.00 0.00 0.00 6.13
314 315 3.890147 AGACTACTCCTACTTATTGCCCG 59.110 47.826 0.00 0.00 0.00 6.13
315 316 6.305411 TCTAGACTACTCCTACTTATTGCCC 58.695 44.000 0.00 0.00 0.00 5.36
316 317 8.949177 GTATCTAGACTACTCCTACTTATTGCC 58.051 40.741 0.00 0.00 0.00 4.52
317 318 8.949177 GGTATCTAGACTACTCCTACTTATTGC 58.051 40.741 0.00 0.00 0.00 3.56
321 322 8.156165 GCTTGGTATCTAGACTACTCCTACTTA 58.844 40.741 0.00 0.00 0.00 2.24
322 323 6.999871 GCTTGGTATCTAGACTACTCCTACTT 59.000 42.308 0.00 0.00 0.00 2.24
323 324 6.466182 GGCTTGGTATCTAGACTACTCCTACT 60.466 46.154 0.00 0.00 0.00 2.57
324 325 5.706833 GGCTTGGTATCTAGACTACTCCTAC 59.293 48.000 0.00 0.00 0.00 3.18
325 326 5.611835 AGGCTTGGTATCTAGACTACTCCTA 59.388 44.000 0.00 0.00 32.38 2.94
326 327 4.417518 AGGCTTGGTATCTAGACTACTCCT 59.582 45.833 0.00 3.41 32.38 3.69
327 328 4.732065 AGGCTTGGTATCTAGACTACTCC 58.268 47.826 0.00 0.00 32.38 3.85
328 329 4.453136 CGAGGCTTGGTATCTAGACTACTC 59.547 50.000 0.00 0.00 34.29 2.59
329 330 4.102838 TCGAGGCTTGGTATCTAGACTACT 59.897 45.833 0.97 0.00 34.29 2.57
330 331 4.213906 GTCGAGGCTTGGTATCTAGACTAC 59.786 50.000 0.97 0.00 34.29 2.73
331 332 4.102838 AGTCGAGGCTTGGTATCTAGACTA 59.897 45.833 0.97 0.00 40.12 2.59
332 333 3.117813 AGTCGAGGCTTGGTATCTAGACT 60.118 47.826 0.97 0.00 38.20 3.24
333 334 3.215975 AGTCGAGGCTTGGTATCTAGAC 58.784 50.000 0.97 0.00 34.74 2.59
334 335 3.579534 AGTCGAGGCTTGGTATCTAGA 57.420 47.619 0.97 0.00 0.00 2.43
335 336 3.189702 GCTAGTCGAGGCTTGGTATCTAG 59.810 52.174 0.97 9.88 0.00 2.43
336 337 3.147629 GCTAGTCGAGGCTTGGTATCTA 58.852 50.000 0.97 0.41 0.00 1.98
337 338 1.957877 GCTAGTCGAGGCTTGGTATCT 59.042 52.381 0.97 0.00 0.00 1.98
338 339 1.335142 CGCTAGTCGAGGCTTGGTATC 60.335 57.143 0.97 0.00 41.67 2.24
339 340 0.669077 CGCTAGTCGAGGCTTGGTAT 59.331 55.000 0.97 0.00 41.67 2.73
340 341 2.001361 GCGCTAGTCGAGGCTTGGTA 62.001 60.000 0.00 0.00 41.67 3.25
341 342 2.885861 CGCTAGTCGAGGCTTGGT 59.114 61.111 0.97 0.00 41.67 3.67
342 343 2.583593 GCGCTAGTCGAGGCTTGG 60.584 66.667 0.00 0.00 41.67 3.61
343 344 2.951745 CGCGCTAGTCGAGGCTTG 60.952 66.667 5.56 0.00 41.67 4.01
344 345 4.856607 GCGCGCTAGTCGAGGCTT 62.857 66.667 26.67 0.00 41.67 4.35
359 360 3.118454 AAGACATTGCGTCCGGCG 61.118 61.111 12.98 12.98 46.69 6.46
360 361 2.480555 CAAGACATTGCGTCCGGC 59.519 61.111 0.00 0.00 46.69 6.13
361 362 1.635663 GACCAAGACATTGCGTCCGG 61.636 60.000 0.00 0.00 46.69 5.14
362 363 0.670546 AGACCAAGACATTGCGTCCG 60.671 55.000 0.00 0.00 46.69 4.79
363 364 0.798776 CAGACCAAGACATTGCGTCC 59.201 55.000 0.00 0.00 46.69 4.79
364 365 1.728971 CTCAGACCAAGACATTGCGTC 59.271 52.381 0.00 0.00 45.77 5.19
365 366 1.800805 CTCAGACCAAGACATTGCGT 58.199 50.000 0.00 0.00 34.91 5.24
366 367 0.445436 GCTCAGACCAAGACATTGCG 59.555 55.000 0.00 0.00 34.91 4.85
367 368 1.736681 GAGCTCAGACCAAGACATTGC 59.263 52.381 9.40 0.00 34.91 3.56
390 391 2.438795 GAGTCGCCGAGGTCCTCT 60.439 66.667 17.00 0.00 0.00 3.69
521 522 2.019807 AAAGGTCTGGTCCGGTAAGA 57.980 50.000 0.00 0.00 0.00 2.10
646 5233 8.713708 TGTTTCTTATTAGGGTTTTCATTGGA 57.286 30.769 0.00 0.00 0.00 3.53
703 5466 3.859411 TTTGCACTTGTTTCTTCGGTT 57.141 38.095 0.00 0.00 0.00 4.44
704 5467 3.442273 TCTTTTGCACTTGTTTCTTCGGT 59.558 39.130 0.00 0.00 0.00 4.69
778 5585 8.450180 GTTTGTTTCTTTCATGGTTTTCATTGT 58.550 29.630 0.00 0.00 32.92 2.71
819 5626 7.985634 TGAATTTCTTGTTTTTCCTTTCGAG 57.014 32.000 0.00 0.00 0.00 4.04
847 5654 8.070034 TCTTCCCTGTCTATTTATCGTTACAA 57.930 34.615 0.00 0.00 0.00 2.41
852 5659 9.765795 CTTATTTCTTCCCTGTCTATTTATCGT 57.234 33.333 0.00 0.00 0.00 3.73
860 5667 9.635404 TTTGTTTTCTTATTTCTTCCCTGTCTA 57.365 29.630 0.00 0.00 0.00 2.59
911 5720 2.069273 CGTTGGTCGATCTCTTTGCTT 58.931 47.619 0.00 0.00 42.86 3.91
1265 6082 3.314553 TCTGCGGAAACTAGAGAAAACG 58.685 45.455 0.00 0.00 0.00 3.60
1271 6088 3.254892 GAAACCTCTGCGGAAACTAGAG 58.745 50.000 0.00 0.00 38.38 2.43
1368 6190 1.985447 ATTGAAGCATGCTCGCACGG 61.985 55.000 22.93 0.00 0.00 4.94
1448 6270 1.141053 CTCCACTACCCCAATACCAGC 59.859 57.143 0.00 0.00 0.00 4.85
1476 6304 0.604243 TACACAAACGCCAAGCCGAT 60.604 50.000 0.00 0.00 0.00 4.18
1485 6313 1.329292 TGCTCAACTGTACACAAACGC 59.671 47.619 0.00 0.00 0.00 4.84
1491 6319 2.955614 ACCGTATGCTCAACTGTACAC 58.044 47.619 0.00 0.00 0.00 2.90
1521 6349 4.032900 ACAATCTAATAGAGCAAACACGCG 59.967 41.667 3.53 3.53 36.85 6.01
1524 6352 9.760660 CAGTTAACAATCTAATAGAGCAAACAC 57.239 33.333 8.61 0.00 0.00 3.32
1536 6364 9.474313 AAATCTAATGGCCAGTTAACAATCTAA 57.526 29.630 12.70 0.00 0.00 2.10
1539 6367 9.120538 TCTAAATCTAATGGCCAGTTAACAATC 57.879 33.333 12.70 0.00 0.00 2.67
1551 6379 7.992754 AAGTGATGGATCTAAATCTAATGGC 57.007 36.000 0.00 0.00 32.12 4.40
1573 6401 8.101654 ACTACGAGAGATTACCTAAGCATAAG 57.898 38.462 0.00 0.00 0.00 1.73
1592 6420 7.411480 CGAAATTCTACAAATCTGCAACTACGA 60.411 37.037 0.00 0.00 0.00 3.43
1608 6438 7.820044 ACTCTTTGATGACTCGAAATTCTAC 57.180 36.000 0.00 0.00 0.00 2.59
1618 6449 5.411053 CAGGAAAGGAACTCTTTGATGACTC 59.589 44.000 0.00 0.00 45.00 3.36
1623 6454 3.181429 TGCCAGGAAAGGAACTCTTTGAT 60.181 43.478 0.00 0.00 45.00 2.57
1633 6464 4.556697 TCTATACAGATGCCAGGAAAGGA 58.443 43.478 0.00 0.00 0.00 3.36
1640 6471 6.839124 ATCTCTTCTCTATACAGATGCCAG 57.161 41.667 0.00 0.00 0.00 4.85
1672 6503 7.550906 GTCTGGATAAGAGAACTAAGCAATTGT 59.449 37.037 7.40 0.00 34.84 2.71
1673 6504 7.550551 TGTCTGGATAAGAGAACTAAGCAATTG 59.449 37.037 0.00 0.00 34.84 2.32
1683 6514 7.439655 AGCGAATTATTGTCTGGATAAGAGAAC 59.560 37.037 0.00 0.00 40.70 3.01
1696 6527 6.512177 ACATCGAAGTAGCGAATTATTGTC 57.488 37.500 0.00 0.00 44.22 3.18
1698 6529 6.933130 TGAACATCGAAGTAGCGAATTATTG 58.067 36.000 0.00 0.00 44.22 1.90
1700 6531 7.438160 TGAATGAACATCGAAGTAGCGAATTAT 59.562 33.333 0.00 0.00 44.22 1.28
1701 6532 6.754675 TGAATGAACATCGAAGTAGCGAATTA 59.245 34.615 0.00 0.00 44.22 1.40
1703 6534 5.109210 TGAATGAACATCGAAGTAGCGAAT 58.891 37.500 0.00 0.00 44.22 3.34
1705 6536 4.104696 TGAATGAACATCGAAGTAGCGA 57.895 40.909 0.00 0.00 45.22 4.93
1706 6537 3.859961 ACTGAATGAACATCGAAGTAGCG 59.140 43.478 0.00 0.00 0.00 4.26
1725 6556 4.843220 ATTCTTTTGTGCTCCTTCACTG 57.157 40.909 0.00 0.00 37.81 3.66
1731 6562 3.953612 TGTGTCAATTCTTTTGTGCTCCT 59.046 39.130 0.00 0.00 0.00 3.69
1737 6568 6.976934 AACCCTATGTGTCAATTCTTTTGT 57.023 33.333 0.00 0.00 0.00 2.83
1747 6578 7.383687 CAGTTAAGAGTAAACCCTATGTGTCA 58.616 38.462 0.00 0.00 0.00 3.58
1749 6580 6.171213 GCAGTTAAGAGTAAACCCTATGTGT 58.829 40.000 0.00 0.00 0.00 3.72
1750 6581 6.170506 TGCAGTTAAGAGTAAACCCTATGTG 58.829 40.000 0.00 0.00 0.00 3.21
1815 6652 5.878332 TGCACACATATAAGTGGAAGTTG 57.122 39.130 12.40 2.81 43.72 3.16
1824 6661 9.053840 AGAAAGAGAATCATGCACACATATAAG 57.946 33.333 0.00 0.00 37.82 1.73
1837 6680 9.950496 ACACATTTACTACAGAAAGAGAATCAT 57.050 29.630 0.00 0.00 37.82 2.45
1849 6696 7.387948 ACTTTAGGAAGCACACATTTACTACAG 59.612 37.037 0.00 0.00 36.29 2.74
1862 6709 4.540824 CAAGCAAGAACTTTAGGAAGCAC 58.459 43.478 0.00 0.00 36.29 4.40
1865 6712 4.791974 CAGCAAGCAAGAACTTTAGGAAG 58.208 43.478 0.00 0.00 38.87 3.46
1868 6719 2.938869 GCAGCAAGCAAGAACTTTAGG 58.061 47.619 0.00 0.00 44.79 2.69
1888 8804 8.752005 TTTTATGAAGTTGGGAGATTCTATGG 57.248 34.615 0.00 0.00 0.00 2.74
1893 8809 7.765819 CCCAAATTTTATGAAGTTGGGAGATTC 59.234 37.037 25.59 0.00 36.22 2.52
1903 8819 7.733047 ACTTTCTACCCCCAAATTTTATGAAGT 59.267 33.333 0.00 0.00 0.00 3.01
1906 8822 8.499288 AAACTTTCTACCCCCAAATTTTATGA 57.501 30.769 0.00 0.00 0.00 2.15
1910 8826 6.158871 TCCAAAACTTTCTACCCCCAAATTTT 59.841 34.615 0.00 0.00 0.00 1.82
1927 8843 4.799564 TGTTTGCACTTTCTCCAAAACT 57.200 36.364 0.00 0.00 31.11 2.66
1932 8848 3.513515 ACCTTTTGTTTGCACTTTCTCCA 59.486 39.130 0.00 0.00 0.00 3.86
1937 8853 8.560355 AATTTTCTACCTTTTGTTTGCACTTT 57.440 26.923 0.00 0.00 0.00 2.66
1940 8856 8.547894 CCTTAATTTTCTACCTTTTGTTTGCAC 58.452 33.333 0.00 0.00 0.00 4.57
1941 8857 8.478877 TCCTTAATTTTCTACCTTTTGTTTGCA 58.521 29.630 0.00 0.00 0.00 4.08
1963 8879 7.366011 CCCCTGAAATTCTAACTAGTCATCCTT 60.366 40.741 0.00 0.00 0.00 3.36
1964 8880 6.100424 CCCCTGAAATTCTAACTAGTCATCCT 59.900 42.308 0.00 0.00 0.00 3.24
1976 8893 2.580322 TGTGATGGCCCCTGAAATTCTA 59.420 45.455 0.00 0.00 0.00 2.10
1977 8894 1.358787 TGTGATGGCCCCTGAAATTCT 59.641 47.619 0.00 0.00 0.00 2.40
1978 8895 1.851304 TGTGATGGCCCCTGAAATTC 58.149 50.000 0.00 0.00 0.00 2.17
1979 8896 2.502538 CAATGTGATGGCCCCTGAAATT 59.497 45.455 0.00 0.00 0.00 1.82
1984 8901 0.033796 AGTCAATGTGATGGCCCCTG 60.034 55.000 0.00 0.00 0.00 4.45
1985 8902 1.595311 TAGTCAATGTGATGGCCCCT 58.405 50.000 0.00 0.00 0.00 4.79
1989 8906 6.309980 CGAGAGATTATAGTCAATGTGATGGC 59.690 42.308 0.00 0.00 0.00 4.40
1990 8907 7.597386 TCGAGAGATTATAGTCAATGTGATGG 58.403 38.462 0.00 0.00 33.31 3.51
2013 8931 7.943952 TGAACAAACAACAAACTGTAAATTCG 58.056 30.769 0.00 0.00 0.00 3.34
2016 8934 7.386299 TGCTTGAACAAACAACAAACTGTAAAT 59.614 29.630 0.00 0.00 0.00 1.40
2023 8941 7.513968 TGTTATTGCTTGAACAAACAACAAAC 58.486 30.769 15.67 15.67 36.45 2.93
2025 8943 7.840342 ATGTTATTGCTTGAACAAACAACAA 57.160 28.000 5.68 0.00 39.69 2.83
2029 8947 8.976471 CAACATATGTTATTGCTTGAACAAACA 58.024 29.630 20.39 0.00 38.94 2.83
2031 8949 9.926158 ATCAACATATGTTATTGCTTGAACAAA 57.074 25.926 20.39 0.00 38.94 2.83
2034 8952 8.915871 ACATCAACATATGTTATTGCTTGAAC 57.084 30.769 20.39 0.00 36.71 3.18
2037 8955 9.961266 CAAAACATCAACATATGTTATTGCTTG 57.039 29.630 20.39 19.21 46.72 4.01
2049 8967 4.674885 CGAGGCATGCAAAACATCAACATA 60.675 41.667 21.36 0.00 36.64 2.29
2050 8968 3.592059 GAGGCATGCAAAACATCAACAT 58.408 40.909 21.36 0.00 36.64 2.71
2055 8973 1.621107 CACGAGGCATGCAAAACATC 58.379 50.000 21.36 6.15 36.64 3.06
2065 8983 2.808315 CTCCTACGCACGAGGCAT 59.192 61.111 0.00 0.00 45.17 4.40
2071 8989 2.094659 CAACTGGCTCCTACGCACG 61.095 63.158 0.00 0.00 0.00 5.34
2074 8992 1.026718 AATGCAACTGGCTCCTACGC 61.027 55.000 0.00 0.00 45.15 4.42
2075 8993 1.009829 GAATGCAACTGGCTCCTACG 58.990 55.000 0.00 0.00 45.15 3.51
2160 9078 2.012673 GAAGCCTCTACCGTTCGAGTA 58.987 52.381 0.00 0.00 0.00 2.59
2193 9111 0.250513 ATTCCTCGGTGCTGTTCTCC 59.749 55.000 0.00 0.00 0.00 3.71
2199 9117 2.353889 CTCATTTGATTCCTCGGTGCTG 59.646 50.000 0.00 0.00 0.00 4.41
2202 9120 2.092968 TCCCTCATTTGATTCCTCGGTG 60.093 50.000 0.00 0.00 0.00 4.94
2203 9121 2.171448 CTCCCTCATTTGATTCCTCGGT 59.829 50.000 0.00 0.00 0.00 4.69
2205 9123 2.158842 AGCTCCCTCATTTGATTCCTCG 60.159 50.000 0.00 0.00 0.00 4.63
2244 9162 4.730657 CACCTCACTCAATCTCAATTTGC 58.269 43.478 0.00 0.00 0.00 3.68
2616 9535 7.083858 CACTTTGTGTCGAATTTTGACCATAT 58.916 34.615 13.12 0.13 35.46 1.78
2641 9560 1.480545 GGGTTTATTGGTGCCCATCAC 59.519 52.381 0.00 0.00 44.90 3.06
2650 9569 0.916809 CTCCCTCCGGGTTTATTGGT 59.083 55.000 0.00 0.00 44.74 3.67
2662 9581 6.070136 ACAGTAATTTCTTACTTCCTCCCTCC 60.070 42.308 0.00 0.00 44.07 4.30
2665 9584 5.880887 CCACAGTAATTTCTTACTTCCTCCC 59.119 44.000 0.00 0.00 44.07 4.30
2690 9609 7.410087 CGTTTCAATCATCTCAATTTGTTCTGC 60.410 37.037 0.00 0.00 0.00 4.26
2706 9625 5.967088 TGTTTCCTTTTTCCGTTTCAATCA 58.033 33.333 0.00 0.00 0.00 2.57
2712 9631 5.113383 GGTGAATGTTTCCTTTTTCCGTTT 58.887 37.500 0.00 0.00 0.00 3.60
2715 9634 3.068873 TGGGTGAATGTTTCCTTTTTCCG 59.931 43.478 0.00 0.00 0.00 4.30
2724 9643 4.883585 TGCATCTCTATGGGTGAATGTTTC 59.116 41.667 0.00 0.00 33.38 2.78
2729 9648 6.271857 AGAAGTATGCATCTCTATGGGTGAAT 59.728 38.462 0.19 0.00 33.38 2.57
2745 9664 6.149474 ACCACAACTCACAAATAGAAGTATGC 59.851 38.462 0.00 0.00 0.00 3.14
2766 9685 6.966021 TCTTAGAACTGCAACATTTTACCAC 58.034 36.000 0.00 0.00 0.00 4.16
2771 9690 6.985645 TGCATTTCTTAGAACTGCAACATTTT 59.014 30.769 29.02 0.00 39.68 1.82
2803 9722 0.322975 TGAAGTCTCAGCAGAAGGCC 59.677 55.000 0.00 0.00 46.50 5.19
2830 9749 6.072119 ACTCAAAAGGGATACGGCTTAAAAAG 60.072 38.462 0.00 0.00 37.60 2.27
2873 9792 4.202524 ACAACTGCTTCAACCCCATAAGTA 60.203 41.667 0.00 0.00 0.00 2.24
2940 9859 4.321527 CCAAAAAGAAGACAGAGAATGGCC 60.322 45.833 0.00 0.00 37.86 5.36
2944 9863 8.753497 AAACTACCAAAAAGAAGACAGAGAAT 57.247 30.769 0.00 0.00 0.00 2.40
2979 9904 5.266756 TGCAAAAGCATTGAAAATAAGCG 57.733 34.783 6.45 0.00 0.00 4.68
2980 9905 6.093082 AGGATGCAAAAGCATTGAAAATAAGC 59.907 34.615 4.29 0.00 0.00 3.09
2999 9924 5.444663 AACACAAAGAGAAGAAAGGATGC 57.555 39.130 0.00 0.00 0.00 3.91
3047 9973 2.584791 GCGCAAAGTCCAACTACAATG 58.415 47.619 0.30 0.00 0.00 2.82
3054 9980 0.238553 GAGAAGGCGCAAAGTCCAAC 59.761 55.000 10.83 0.00 0.00 3.77
3058 9984 3.169198 CCGAGAAGGCGCAAAGTC 58.831 61.111 10.83 0.00 0.00 3.01
3092 10018 2.036217 CCACCAAGCATGTGTCATGTTT 59.964 45.455 10.68 8.39 31.71 2.83
3104 10030 2.591429 CGAGCACACCACCAAGCA 60.591 61.111 0.00 0.00 0.00 3.91
3109 10035 1.852067 ATTTTCGCGAGCACACCACC 61.852 55.000 9.59 0.00 0.00 4.61
3122 10048 9.121517 CATATGGCTATCTTGCTAAAATTTTCG 57.878 33.333 6.72 2.05 0.00 3.46
3128 10054 8.570488 CATGTTCATATGGCTATCTTGCTAAAA 58.430 33.333 2.13 0.00 0.00 1.52
3156 10082 5.462398 ACACGTACTGAAGAAACAAGACATC 59.538 40.000 0.00 0.00 0.00 3.06
3195 10121 5.858049 CAGTTCGAAAAATAGCATGAAAGCA 59.142 36.000 0.00 0.00 36.85 3.91
3214 10140 4.338118 TGGGTCTGAAAATGACAACAGTTC 59.662 41.667 0.00 0.00 33.12 3.01
3289 10215 6.168389 TGATCATCCAGTTATCCATCAATCG 58.832 40.000 0.00 0.00 0.00 3.34
3305 10231 3.057033 GCCATGGCTATGTTTGATCATCC 60.057 47.826 29.98 0.00 38.26 3.51
3318 10244 2.576191 ACTAACTGAAAGGCCATGGCTA 59.424 45.455 34.70 16.26 37.50 3.93
3336 10262 4.967084 TTGAACAGGAAAGTGCCTACTA 57.033 40.909 0.00 0.00 36.22 1.82
3337 10263 3.857157 TTGAACAGGAAAGTGCCTACT 57.143 42.857 0.00 0.00 36.22 2.57
3364 10290 8.417780 ACTAGATCATAATATCTTCAATGCGC 57.582 34.615 0.00 0.00 37.41 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.