Multiple sequence alignment - TraesCS2A01G373700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G373700 chr2A 100.000 3373 0 0 1 3373 616991163 616994535 0.000000e+00 6229
1 TraesCS2A01G373700 chr2D 95.567 2662 86 10 534 3177 474511358 474514005 0.000000e+00 4233
2 TraesCS2A01G373700 chr2D 84.685 555 62 6 1 533 474510777 474511330 1.780000e-147 532
3 TraesCS2A01G373700 chr2B 92.699 2890 119 33 531 3373 555383930 555386774 0.000000e+00 4084
4 TraesCS2A01G373700 chr6D 86.982 338 38 5 1506 1840 307517590 307517256 3.180000e-100 375
5 TraesCS2A01G373700 chr6D 83.815 173 28 0 1615 1787 388951399 388951227 7.490000e-37 165
6 TraesCS2A01G373700 chr6A 86.391 338 40 5 1506 1840 444674675 444674341 6.880000e-97 364
7 TraesCS2A01G373700 chr6A 83.815 173 28 0 1615 1787 535403366 535403194 7.490000e-37 165
8 TraesCS2A01G373700 chr7A 83.871 186 29 1 1603 1788 135689654 135689470 3.460000e-40 176
9 TraesCS2A01G373700 chr7B 83.708 178 29 0 1611 1788 99089375 99089198 5.790000e-38 169
10 TraesCS2A01G373700 chr7D 82.234 197 32 2 1592 1788 136204701 136204508 2.080000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G373700 chr2A 616991163 616994535 3372 False 6229.0 6229 100.000 1 3373 1 chr2A.!!$F1 3372
1 TraesCS2A01G373700 chr2D 474510777 474514005 3228 False 2382.5 4233 90.126 1 3177 2 chr2D.!!$F1 3176
2 TraesCS2A01G373700 chr2B 555383930 555386774 2844 False 4084.0 4084 92.699 531 3373 1 chr2B.!!$F1 2842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 268 0.109781 CCATCGAGCAAAAACCACCG 60.110 55.0 0.0 0.0 0.00 4.94 F
286 287 0.462047 GTCGCTCCAAATGATCGGGT 60.462 55.0 0.0 0.0 33.52 5.28 F
471 493 0.685097 AGCTTTGCTCTACACGGGAA 59.315 50.0 0.0 0.0 30.62 3.97 F
1998 2066 0.234884 GTCCACGCTTGAAAACCGAG 59.765 55.0 0.0 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 1270 1.137825 GGAAGTGGAGAGCGACGAG 59.862 63.158 0.00 0.0 0.0 4.18 R
1370 1435 1.216977 CGACGCTGGTTGGGACATA 59.783 57.895 0.00 0.0 39.3 2.29 R
2332 2400 1.420138 GGTGTGTTTCTGGAGGAGGAA 59.580 52.381 0.00 0.0 0.0 3.36 R
3187 3264 0.738389 CACGTGTTTGCAGAAGGGTT 59.262 50.000 7.58 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.519622 CCTCGGATGCCATGGCCTA 61.520 63.158 33.44 17.20 41.09 3.93
114 115 2.787567 GGCGAGGTAGAGGAGCACC 61.788 68.421 0.00 0.00 34.86 5.01
115 116 2.052690 GCGAGGTAGAGGAGCACCA 61.053 63.158 2.07 0.00 37.28 4.17
125 126 1.600916 GGAGCACCACTTCACCCAC 60.601 63.158 0.00 0.00 35.97 4.61
134 135 1.136329 ACTTCACCCACAGGCTCCAT 61.136 55.000 0.00 0.00 36.11 3.41
141 142 0.692419 CCACAGGCTCCATCCTACCT 60.692 60.000 0.00 0.00 33.95 3.08
180 181 1.303317 GGCACACCACCCAACTAGG 60.303 63.158 0.00 0.00 35.26 3.02
182 183 0.321653 GCACACCACCCAACTAGGAG 60.322 60.000 0.00 0.00 41.22 3.69
192 193 4.158603 CCCAACTAGGAGCTGTAGAGCG 62.159 59.091 6.18 0.00 41.96 5.03
200 201 2.808315 CTGTAGAGCGCACCCGAT 59.192 61.111 11.47 0.00 36.29 4.18
208 209 3.911698 CGCACCCGATCCCGATCA 61.912 66.667 5.59 0.00 37.69 2.92
212 213 2.661866 CCCGATCCCGATCAACGC 60.662 66.667 5.59 0.00 41.07 4.84
213 214 2.106131 CCGATCCCGATCAACGCA 59.894 61.111 5.59 0.00 41.07 5.24
215 216 2.576893 CGATCCCGATCAACGCACG 61.577 63.158 5.59 0.00 41.07 5.34
253 254 0.462581 CCCTCATCACCACACCATCG 60.463 60.000 0.00 0.00 0.00 3.84
255 256 1.472201 CCTCATCACCACACCATCGAG 60.472 57.143 0.00 0.00 0.00 4.04
265 266 1.336755 ACACCATCGAGCAAAAACCAC 59.663 47.619 0.00 0.00 0.00 4.16
267 268 0.109781 CCATCGAGCAAAAACCACCG 60.110 55.000 0.00 0.00 0.00 4.94
273 274 1.370051 GCAAAAACCACCGTCGCTC 60.370 57.895 0.00 0.00 0.00 5.03
275 276 1.153127 AAAAACCACCGTCGCTCCA 60.153 52.632 0.00 0.00 0.00 3.86
276 277 0.748729 AAAAACCACCGTCGCTCCAA 60.749 50.000 0.00 0.00 0.00 3.53
281 282 0.744414 CCACCGTCGCTCCAAATGAT 60.744 55.000 0.00 0.00 0.00 2.45
282 283 0.652592 CACCGTCGCTCCAAATGATC 59.347 55.000 0.00 0.00 0.00 2.92
284 285 1.490693 CCGTCGCTCCAAATGATCGG 61.491 60.000 0.00 0.00 33.52 4.18
285 286 1.490693 CGTCGCTCCAAATGATCGGG 61.491 60.000 0.00 0.00 33.52 5.14
286 287 0.462047 GTCGCTCCAAATGATCGGGT 60.462 55.000 0.00 0.00 33.52 5.28
293 294 1.006832 CAAATGATCGGGTCGACCAC 58.993 55.000 34.40 22.34 39.18 4.16
307 308 2.494471 TCGACCACCGTATCAACAAGAT 59.506 45.455 0.00 0.00 39.75 2.40
317 318 5.701290 CCGTATCAACAAGATAGGAAATCCC 59.299 44.000 6.43 0.00 44.17 3.85
318 319 5.701290 CGTATCAACAAGATAGGAAATCCCC 59.299 44.000 0.00 0.00 44.17 4.81
319 320 5.732331 ATCAACAAGATAGGAAATCCCCA 57.268 39.130 0.00 0.00 34.43 4.96
328 329 1.173913 GGAAATCCCCAACACCTTCG 58.826 55.000 0.00 0.00 0.00 3.79
357 358 1.464608 CCCGTTGTCATAACAGTGCTG 59.535 52.381 0.00 0.00 36.57 4.41
375 376 2.047560 GCCGGTGGTAGTGGTGAC 60.048 66.667 1.90 0.00 0.00 3.67
398 399 1.621072 GGGAGAGAGAGGAAGAAGGCA 60.621 57.143 0.00 0.00 0.00 4.75
399 400 1.756538 GGAGAGAGAGGAAGAAGGCAG 59.243 57.143 0.00 0.00 0.00 4.85
401 402 1.078656 AGAGAGAGGAAGAAGGCAGGT 59.921 52.381 0.00 0.00 0.00 4.00
415 437 1.109920 GCAGGTATCGCCTCAGAGGA 61.110 60.000 21.89 0.00 46.96 3.71
441 463 4.116328 CGCCGTCTCGAAGGAGCA 62.116 66.667 2.99 0.00 40.26 4.26
448 470 0.891373 TCTCGAAGGAGCAGGTCAAG 59.109 55.000 1.20 0.00 40.26 3.02
450 472 1.001406 CTCGAAGGAGCAGGTCAAGTT 59.999 52.381 1.20 0.00 32.61 2.66
471 493 0.685097 AGCTTTGCTCTACACGGGAA 59.315 50.000 0.00 0.00 30.62 3.97
479 501 2.893637 CTCTACACGGGAATGGAGTTG 58.106 52.381 0.00 0.00 31.79 3.16
544 594 1.075674 TGGCATTGTGTGTGGGGTT 60.076 52.632 0.00 0.00 0.00 4.11
546 596 1.203112 TGGCATTGTGTGTGGGGTTAT 60.203 47.619 0.00 0.00 0.00 1.89
548 598 3.093057 GGCATTGTGTGTGGGGTTATTA 58.907 45.455 0.00 0.00 0.00 0.98
563 613 8.244113 GTGGGGTTATTATTTCTTCAGAACAAG 58.756 37.037 0.00 0.00 33.13 3.16
614 664 4.265073 ACTGTCATCCTACCAGAAAATGC 58.735 43.478 0.00 0.00 0.00 3.56
619 669 2.378038 TCCTACCAGAAAATGCCATGC 58.622 47.619 0.00 0.00 0.00 4.06
624 674 0.740149 CAGAAAATGCCATGCCGCTA 59.260 50.000 0.00 0.00 0.00 4.26
634 684 1.003545 CCATGCCGCTATGAAGAAACG 60.004 52.381 4.86 0.00 0.00 3.60
673 724 7.959109 ACAACTAAAACTACACAGAAAAACGTC 59.041 33.333 0.00 0.00 0.00 4.34
682 733 1.969256 CAGAAAAACGTCCGAAATGCG 59.031 47.619 0.00 0.00 40.47 4.73
711 772 4.062293 CGGCAACCAGATATAATTTCCGA 58.938 43.478 0.00 0.00 35.61 4.55
742 804 2.112279 TGGAGTGGAGTTACCTTGGT 57.888 50.000 0.00 0.00 39.86 3.67
861 923 8.053355 CACTTCACTTTTCCCTACCCTTATAAT 58.947 37.037 0.00 0.00 0.00 1.28
1202 1264 4.065281 CCTCCACCGGACCACGTC 62.065 72.222 9.46 0.00 42.24 4.34
1203 1265 4.415332 CTCCACCGGACCACGTCG 62.415 72.222 9.46 0.00 42.24 5.12
1205 1267 4.712425 CCACCGGACCACGTCGTC 62.712 72.222 9.46 4.56 42.24 4.20
1370 1435 0.251653 TTCTCCGGCAGTACTCCAGT 60.252 55.000 0.00 0.00 0.00 4.00
1430 1498 0.534652 GGCACCAGCAGATGATCTCC 60.535 60.000 0.00 0.00 44.61 3.71
1996 2064 1.281656 GGTCCACGCTTGAAAACCG 59.718 57.895 0.00 0.00 0.00 4.44
1998 2066 0.234884 GTCCACGCTTGAAAACCGAG 59.765 55.000 0.00 0.00 0.00 4.63
2020 2088 2.438434 GCATCCACCCCCAACGAG 60.438 66.667 0.00 0.00 0.00 4.18
2171 2239 0.456628 GCTCCTTCTGGGACTACGAC 59.543 60.000 0.00 0.00 39.58 4.34
2210 2278 0.681243 GCCTCTTCATTCACCACCCC 60.681 60.000 0.00 0.00 0.00 4.95
2332 2400 1.900486 CCCGGTAACCTCTTCTTCAGT 59.100 52.381 0.00 0.00 0.00 3.41
2355 2423 1.694150 CTCCTCCAGAAACACACCAGA 59.306 52.381 0.00 0.00 0.00 3.86
2391 2460 4.080919 TGTGAAGGTCTAAGCATGCATACT 60.081 41.667 21.98 3.01 0.00 2.12
2424 2493 2.567169 TGAACACCTTGGTGATCGATCT 59.433 45.455 25.02 1.54 0.00 2.75
2553 2622 7.147983 GCCACACATTTATTTCCCAATACTACA 60.148 37.037 0.00 0.00 0.00 2.74
2554 2623 8.188139 CCACACATTTATTTCCCAATACTACAC 58.812 37.037 0.00 0.00 0.00 2.90
2599 2668 0.698238 TCCTGTACCTTGGCTGCAAT 59.302 50.000 0.50 0.00 0.00 3.56
2733 2808 5.391523 GCTGCAAACCTAATCGTTTCATACA 60.392 40.000 0.00 0.00 33.69 2.29
2764 2839 6.883217 GTGATGGCTCATATGATTTGGTATCT 59.117 38.462 5.72 0.00 32.98 1.98
2765 2840 8.043113 GTGATGGCTCATATGATTTGGTATCTA 58.957 37.037 5.72 0.00 32.98 1.98
2766 2841 8.262933 TGATGGCTCATATGATTTGGTATCTAG 58.737 37.037 5.72 0.00 0.00 2.43
3064 3141 1.661112 GTCGATTGTGCTACTTCTGGC 59.339 52.381 0.00 0.00 0.00 4.85
3075 3152 1.588239 ACTTCTGGCCTGATCCATCA 58.412 50.000 13.72 0.00 35.22 3.07
3091 3168 7.472741 TGATCCATCATTTGCCTATTTCCTAT 58.527 34.615 0.00 0.00 0.00 2.57
3096 3173 5.385198 TCATTTGCCTATTTCCTATGTCCC 58.615 41.667 0.00 0.00 0.00 4.46
3177 3254 2.814336 GGTGTCCTCATCTTTTGGTGAC 59.186 50.000 0.00 0.00 0.00 3.67
3179 3256 3.251004 GTGTCCTCATCTTTTGGTGACAC 59.749 47.826 0.00 0.00 43.42 3.67
3182 3259 2.494059 CTCATCTTTTGGTGACACCGT 58.506 47.619 19.67 0.00 42.58 4.83
3183 3260 2.480419 CTCATCTTTTGGTGACACCGTC 59.520 50.000 19.67 0.00 42.58 4.79
3186 3263 2.925724 TCTTTTGGTGACACCGTCAAT 58.074 42.857 19.67 0.00 44.49 2.57
3187 3264 4.074627 TCTTTTGGTGACACCGTCAATA 57.925 40.909 19.67 3.53 44.49 1.90
3191 3294 1.270947 TGGTGACACCGTCAATAACCC 60.271 52.381 19.67 0.00 44.49 4.11
3203 3306 4.546570 GTCAATAACCCTTCTGCAAACAC 58.453 43.478 0.00 0.00 0.00 3.32
3224 3327 5.808030 ACACGTGACAAATTTTGGGTTTTAG 59.192 36.000 25.01 1.27 34.12 1.85
3237 3340 8.973835 TTTTGGGTTTTAGCAATAGTTATTCG 57.026 30.769 0.00 0.00 0.00 3.34
3268 3371 1.728425 GGTTATTGACGGTGTCGGAAC 59.272 52.381 0.00 0.00 41.39 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.174854 TCCGAGGAGATGTATCTGGTGA 59.825 50.000 0.00 0.00 37.25 4.02
61 62 0.459237 CGCTGAGGCCGGATATGATC 60.459 60.000 5.05 0.00 34.44 2.92
64 65 1.373497 GTCGCTGAGGCCGGATATG 60.373 63.158 5.05 0.00 34.44 1.78
78 79 4.404098 ACCACCGGGGAATGTCGC 62.404 66.667 4.41 0.00 41.15 5.19
103 104 1.267121 GGTGAAGTGGTGCTCCTCTA 58.733 55.000 9.64 0.00 36.66 2.43
114 115 1.302832 GGAGCCTGTGGGTGAAGTG 60.303 63.158 0.00 0.00 31.55 3.16
115 116 1.136329 ATGGAGCCTGTGGGTGAAGT 61.136 55.000 0.00 0.00 31.55 3.01
134 135 0.253044 GCTCAATGCCACAGGTAGGA 59.747 55.000 0.00 0.00 35.15 2.94
141 142 2.858622 GCAGTAGCTCAATGCCACA 58.141 52.632 6.48 0.00 44.23 4.17
161 162 1.303317 CTAGTTGGGTGGTGTGCCC 60.303 63.158 0.00 0.00 46.26 5.36
165 166 0.473886 AGCTCCTAGTTGGGTGGTGT 60.474 55.000 0.00 0.00 36.20 4.16
170 171 2.741145 CTCTACAGCTCCTAGTTGGGT 58.259 52.381 0.00 0.00 36.20 4.51
173 174 1.535015 GCGCTCTACAGCTCCTAGTTG 60.535 57.143 0.00 0.00 44.40 3.16
174 175 0.741915 GCGCTCTACAGCTCCTAGTT 59.258 55.000 0.00 0.00 44.40 2.24
180 181 2.202810 GGGTGCGCTCTACAGCTC 60.203 66.667 9.73 0.00 44.40 4.09
182 183 3.432051 ATCGGGTGCGCTCTACAGC 62.432 63.158 9.73 0.00 42.96 4.40
192 193 1.887707 GTTGATCGGGATCGGGTGC 60.888 63.158 4.36 0.00 40.63 5.01
212 213 4.969196 CGGATCCGATGCCCCGTG 62.969 72.222 30.62 0.00 42.83 4.94
235 236 0.536724 TCGATGGTGTGGTGATGAGG 59.463 55.000 0.00 0.00 0.00 3.86
253 254 1.370051 GCGACGGTGGTTTTTGCTC 60.370 57.895 0.00 0.00 0.00 4.26
255 256 1.370051 GAGCGACGGTGGTTTTTGC 60.370 57.895 3.31 0.00 0.00 3.68
273 274 0.107897 TGGTCGACCCGATCATTTGG 60.108 55.000 31.19 0.00 42.26 3.28
284 285 0.244450 TGTTGATACGGTGGTCGACC 59.756 55.000 28.17 28.17 42.43 4.79
285 286 1.990563 CTTGTTGATACGGTGGTCGAC 59.009 52.381 7.13 7.13 42.43 4.20
286 287 1.887854 TCTTGTTGATACGGTGGTCGA 59.112 47.619 0.00 0.00 42.43 4.20
293 294 5.701290 GGGATTTCCTATCTTGTTGATACGG 59.299 44.000 0.00 0.00 36.65 4.02
307 308 2.026636 CGAAGGTGTTGGGGATTTCCTA 60.027 50.000 0.00 0.00 35.95 2.94
328 329 3.747976 GACAACGGGCCATGCACC 61.748 66.667 4.39 0.00 0.00 5.01
340 341 1.200020 GGCCAGCACTGTTATGACAAC 59.800 52.381 0.00 0.00 34.85 3.32
357 358 3.315949 TCACCACTACCACCGGCC 61.316 66.667 0.00 0.00 0.00 6.13
375 376 2.297701 CTTCTTCCTCTCTCTCCCTCG 58.702 57.143 0.00 0.00 0.00 4.63
399 400 1.480954 TGTTTCCTCTGAGGCGATACC 59.519 52.381 19.08 4.14 34.61 2.73
401 402 2.457598 AGTGTTTCCTCTGAGGCGATA 58.542 47.619 19.08 5.28 34.61 2.92
415 437 1.443872 CGAGACGGCGCTAGTGTTT 60.444 57.895 6.90 0.00 0.00 2.83
440 462 1.952296 AGCAAAGCTCAACTTGACCTG 59.048 47.619 0.00 0.00 39.09 4.00
441 463 2.355010 AGCAAAGCTCAACTTGACCT 57.645 45.000 0.00 0.00 39.09 3.85
458 480 0.824759 ACTCCATTCCCGTGTAGAGC 59.175 55.000 0.00 0.00 0.00 4.09
503 526 2.429930 CCTGGCGAAGGTTCACCA 59.570 61.111 0.00 0.00 41.74 4.17
518 541 0.540365 CACACAATGCCACCCTTCCT 60.540 55.000 0.00 0.00 0.00 3.36
575 625 5.192927 TGACAGTTTTGAGGTTTCATCTGT 58.807 37.500 0.00 0.00 39.93 3.41
614 664 1.003545 CGTTTCTTCATAGCGGCATGG 60.004 52.381 1.45 0.00 0.00 3.66
619 669 2.606272 GGTAACCGTTTCTTCATAGCGG 59.394 50.000 0.00 0.00 46.83 5.52
673 724 2.020016 CGTTCGCTCGCATTTCGG 59.980 61.111 0.00 0.00 39.05 4.30
682 733 0.459585 TATCTGGTTGCCGTTCGCTC 60.460 55.000 0.00 0.00 38.78 5.03
742 804 2.659063 CCCCACGAGCATGGACTCA 61.659 63.158 3.37 0.00 43.02 3.41
765 827 0.395312 AAGATCGTGGTCGGTGGTTT 59.605 50.000 0.00 0.00 37.69 3.27
766 828 0.395312 AAAGATCGTGGTCGGTGGTT 59.605 50.000 0.00 0.00 37.69 3.67
960 1022 1.583054 GGCGCTAGGAAAATGATCGT 58.417 50.000 7.64 0.00 0.00 3.73
1208 1270 1.137825 GGAAGTGGAGAGCGACGAG 59.862 63.158 0.00 0.00 0.00 4.18
1370 1435 1.216977 CGACGCTGGTTGGGACATA 59.783 57.895 0.00 0.00 39.30 2.29
1996 2064 2.439156 GGGGTGGATGCTGTGCTC 60.439 66.667 0.00 0.00 0.00 4.26
1998 2066 3.884704 TTGGGGGTGGATGCTGTGC 62.885 63.158 0.00 0.00 0.00 4.57
2171 2239 2.447887 GCGAGCACTGTCGTCCATG 61.448 63.158 0.00 0.00 42.17 3.66
2210 2278 3.068691 TCCTCACCGGAGAAGCGG 61.069 66.667 9.46 3.47 44.26 5.52
2332 2400 1.420138 GGTGTGTTTCTGGAGGAGGAA 59.580 52.381 0.00 0.00 0.00 3.36
2381 2450 6.094719 TCAAACTTTGAATGAGTATGCATGC 58.905 36.000 11.82 11.82 36.59 4.06
2424 2493 5.309638 CATCTCTGTCCTAATCCTACTCGA 58.690 45.833 0.00 0.00 0.00 4.04
2631 2700 6.566079 TGTGTAAATGGAGGAGAGATTGAT 57.434 37.500 0.00 0.00 0.00 2.57
2733 2808 7.556635 CCAAATCATATGAGCCATCACATAGAT 59.443 37.037 11.78 0.00 38.57 1.98
3064 3141 5.047519 GGAAATAGGCAAATGATGGATCAGG 60.048 44.000 0.00 0.00 40.64 3.86
3075 3152 5.669798 AGGGACATAGGAAATAGGCAAAT 57.330 39.130 0.00 0.00 0.00 2.32
3091 3168 5.163237 GGGCTATAAAACAGTGATAGGGACA 60.163 44.000 0.00 0.00 0.00 4.02
3096 3173 7.047891 TGAAGTGGGCTATAAAACAGTGATAG 58.952 38.462 0.00 0.00 0.00 2.08
3177 3254 1.737793 GCAGAAGGGTTATTGACGGTG 59.262 52.381 0.00 0.00 0.00 4.94
3179 3256 2.107950 TGCAGAAGGGTTATTGACGG 57.892 50.000 0.00 0.00 0.00 4.79
3182 3259 3.252215 CGTGTTTGCAGAAGGGTTATTGA 59.748 43.478 0.00 0.00 0.00 2.57
3183 3260 3.004315 ACGTGTTTGCAGAAGGGTTATTG 59.996 43.478 0.00 0.00 0.00 1.90
3186 3263 1.944024 CACGTGTTTGCAGAAGGGTTA 59.056 47.619 7.58 0.00 0.00 2.85
3187 3264 0.738389 CACGTGTTTGCAGAAGGGTT 59.262 50.000 7.58 0.00 0.00 4.11
3191 3294 2.823196 TTGTCACGTGTTTGCAGAAG 57.177 45.000 16.51 0.00 0.00 2.85
3203 3306 4.806247 TGCTAAAACCCAAAATTTGTCACG 59.194 37.500 4.92 0.00 0.00 4.35
3224 3327 6.018669 CCCTCTTGAGTTCGAATAACTATTGC 60.019 42.308 0.00 0.00 0.00 3.56
3237 3340 3.933332 CCGTCAATAACCCTCTTGAGTTC 59.067 47.826 0.00 0.00 32.33 3.01
3268 3371 4.402528 TGGTCGGGTTCGCCATGG 62.403 66.667 7.63 7.63 37.54 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.