Multiple sequence alignment - TraesCS2A01G373500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G373500 chr2A 100.000 7246 0 0 1 7246 615744485 615737240 0.000000e+00 13381.0
1 TraesCS2A01G373500 chr2D 94.788 5871 181 51 897 6696 473720169 473714353 0.000000e+00 9031.0
2 TraesCS2A01G373500 chr2D 93.382 272 9 2 599 866 473721007 473720741 1.890000e-105 394.0
3 TraesCS2A01G373500 chr2D 96.825 126 4 0 6758 6883 473714206 473714081 2.050000e-50 211.0
4 TraesCS2A01G373500 chr2D 81.481 216 16 4 6919 7111 473713416 473713202 9.730000e-34 156.0
5 TraesCS2A01G373500 chr2D 97.619 42 1 0 6692 6733 473714249 473714208 1.010000e-08 73.1
6 TraesCS2A01G373500 chr2B 93.650 5732 188 66 894 6548 554459276 554453644 0.000000e+00 8407.0
7 TraesCS2A01G373500 chr2B 83.178 535 34 14 6692 7177 554453340 554452813 8.630000e-119 438.0
8 TraesCS2A01G373500 chr2B 88.179 313 20 6 570 866 554460114 554459803 2.490000e-94 357.0
9 TraesCS2A01G373500 chr3D 90.883 351 30 2 221 569 505421088 505420738 3.060000e-128 470.0
10 TraesCS2A01G373500 chr7D 90.028 361 33 3 212 570 53333412 53333771 1.420000e-126 464.0
11 TraesCS2A01G373500 chr5A 90.462 346 31 2 222 565 701968847 701968502 8.570000e-124 455.0
12 TraesCS2A01G373500 chr5A 89.489 352 33 4 222 570 297712992 297712642 6.670000e-120 442.0
13 TraesCS2A01G373500 chr6A 89.744 351 31 4 221 567 64265124 64264775 1.850000e-120 444.0
14 TraesCS2A01G373500 chr6A 78.474 367 66 12 4214 4572 445048219 445048580 2.030000e-55 228.0
15 TraesCS2A01G373500 chr6D 88.764 356 35 4 221 571 41159214 41159569 1.440000e-116 431.0
16 TraesCS2A01G373500 chr6D 78.649 370 60 18 4214 4572 307881136 307881497 2.030000e-55 228.0
17 TraesCS2A01G373500 chr1D 89.080 348 35 3 222 567 477499056 477499402 5.190000e-116 429.0
18 TraesCS2A01G373500 chr7A 88.418 354 38 3 223 574 710728569 710728217 2.420000e-114 424.0
19 TraesCS2A01G373500 chr4D 88.761 347 38 1 222 567 370533090 370532744 2.420000e-114 424.0
20 TraesCS2A01G373500 chr6B 77.898 371 61 20 4214 4572 475271375 475271736 2.050000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G373500 chr2A 615737240 615744485 7245 True 13381.000000 13381 100.000000 1 7246 1 chr2A.!!$R1 7245
1 TraesCS2A01G373500 chr2D 473713202 473721007 7805 True 1973.020000 9031 92.819000 599 7111 5 chr2D.!!$R1 6512
2 TraesCS2A01G373500 chr2B 554452813 554460114 7301 True 3067.333333 8407 88.335667 570 7177 3 chr2B.!!$R1 6607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 0.109086 CTAGATAGCATGACGCCCCG 60.109 60.0 0.00 0.0 44.04 5.73 F
619 624 0.306533 CTCCGTCCACCGTGTTTTTG 59.693 55.0 0.00 0.0 33.66 2.44 F
2103 2714 0.320247 CGGATGACAGCCAGGATAGC 60.320 60.0 10.94 0.0 0.00 2.97 F
2670 3281 0.321346 CCACAACCCAATTTCTGCCC 59.679 55.0 0.00 0.0 0.00 5.36 F
3628 4243 0.846870 ACCCCTTCTAGGCCAAGCTT 60.847 55.0 5.01 0.0 32.73 3.74 F
4701 5331 1.028905 CACATCGGGTCTCTCTCTCC 58.971 60.0 0.00 0.0 0.00 3.71 F
5702 6357 0.110823 GCGTCGTTTCTGTCGCAAAT 60.111 50.0 0.00 0.0 46.40 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1172 1751 2.835705 CGACGAGGGGTCAGATCCG 61.836 68.421 0.00 0.0 46.42 4.18 R
2442 3053 3.055094 AGCTACTGGATTTCCGACATTGT 60.055 43.478 0.00 0.0 39.43 2.71 R
4100 4724 1.078497 TTCGGACGCATTGCTGGAT 60.078 52.632 7.12 0.0 0.00 3.41 R
4329 4959 4.256110 TCCATGTGTGAGCTAAACTGATG 58.744 43.478 0.00 0.0 0.00 3.07 R
4912 5545 0.108585 GGCCTGGTGTCAGAACAGAA 59.891 55.000 0.00 0.0 43.49 3.02 R
6191 6865 0.093026 CATTCGCACGGAACTCGAAC 59.907 55.000 0.00 0.0 43.61 3.95 R
6739 7652 0.106967 GGAAATCTCCTGTGCCTCCC 60.107 60.000 0.00 0.0 38.88 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.077184 GGCGGTCATCGGTGGTGA 62.077 66.667 0.00 0.00 39.69 4.02
35 36 2.813908 GCGGTCATCGGTGGTGAC 60.814 66.667 0.00 1.57 44.01 3.67
36 37 2.506217 CGGTCATCGGTGGTGACG 60.506 66.667 0.00 0.00 45.32 4.35
37 38 2.125673 GGTCATCGGTGGTGACGG 60.126 66.667 0.00 0.00 45.32 4.79
38 39 2.813908 GTCATCGGTGGTGACGGC 60.814 66.667 0.00 0.00 36.92 5.68
39 40 4.429212 TCATCGGTGGTGACGGCG 62.429 66.667 4.80 4.80 0.00 6.46
40 41 4.429212 CATCGGTGGTGACGGCGA 62.429 66.667 16.62 0.00 0.00 5.54
41 42 4.430765 ATCGGTGGTGACGGCGAC 62.431 66.667 16.62 8.59 0.00 5.19
53 54 2.202892 GGCGACGATGGGAAGGAC 60.203 66.667 0.00 0.00 0.00 3.85
54 55 2.577059 GCGACGATGGGAAGGACA 59.423 61.111 0.00 0.00 0.00 4.02
55 56 1.810030 GCGACGATGGGAAGGACAC 60.810 63.158 0.00 0.00 0.00 3.67
56 57 1.890894 CGACGATGGGAAGGACACT 59.109 57.895 0.00 0.00 0.00 3.55
57 58 0.458543 CGACGATGGGAAGGACACTG 60.459 60.000 0.00 0.00 0.00 3.66
58 59 0.741221 GACGATGGGAAGGACACTGC 60.741 60.000 0.00 0.00 0.00 4.40
59 60 1.450312 CGATGGGAAGGACACTGCC 60.450 63.158 0.00 0.00 42.36 4.85
60 61 1.450312 GATGGGAAGGACACTGCCG 60.450 63.158 0.00 0.00 44.28 5.69
61 62 3.628646 ATGGGAAGGACACTGCCGC 62.629 63.158 0.00 0.00 44.28 6.53
62 63 4.329545 GGGAAGGACACTGCCGCA 62.330 66.667 0.00 0.00 44.28 5.69
63 64 2.281484 GGAAGGACACTGCCGCAA 60.281 61.111 0.00 0.00 31.02 4.85
64 65 2.328099 GGAAGGACACTGCCGCAAG 61.328 63.158 0.00 0.00 31.02 4.01
77 78 2.932663 CGCAAGGGCAAGAGAAAGA 58.067 52.632 0.00 0.00 41.24 2.52
78 79 0.801251 CGCAAGGGCAAGAGAAAGAG 59.199 55.000 0.00 0.00 41.24 2.85
79 80 1.172175 GCAAGGGCAAGAGAAAGAGG 58.828 55.000 0.00 0.00 40.72 3.69
80 81 1.172175 CAAGGGCAAGAGAAAGAGGC 58.828 55.000 0.00 0.00 0.00 4.70
81 82 0.322008 AAGGGCAAGAGAAAGAGGCG 60.322 55.000 0.00 0.00 0.00 5.52
82 83 1.746991 GGGCAAGAGAAAGAGGCGG 60.747 63.158 0.00 0.00 0.00 6.13
83 84 1.746991 GGCAAGAGAAAGAGGCGGG 60.747 63.158 0.00 0.00 0.00 6.13
84 85 2.402572 GCAAGAGAAAGAGGCGGGC 61.403 63.158 0.00 0.00 0.00 6.13
85 86 1.003355 CAAGAGAAAGAGGCGGGCA 60.003 57.895 3.78 0.00 0.00 5.36
86 87 1.003233 AAGAGAAAGAGGCGGGCAC 60.003 57.895 3.78 0.00 0.00 5.01
87 88 1.768684 AAGAGAAAGAGGCGGGCACA 61.769 55.000 3.78 0.00 0.00 4.57
88 89 1.078143 GAGAAAGAGGCGGGCACAT 60.078 57.895 3.78 0.00 0.00 3.21
89 90 0.678048 GAGAAAGAGGCGGGCACATT 60.678 55.000 3.78 0.00 0.00 2.71
90 91 0.251341 AGAAAGAGGCGGGCACATTT 60.251 50.000 3.78 1.34 0.00 2.32
91 92 0.603065 GAAAGAGGCGGGCACATTTT 59.397 50.000 3.78 0.00 0.00 1.82
92 93 1.000843 GAAAGAGGCGGGCACATTTTT 59.999 47.619 3.78 0.00 0.00 1.94
93 94 1.917872 AAGAGGCGGGCACATTTTTA 58.082 45.000 3.78 0.00 0.00 1.52
94 95 1.173913 AGAGGCGGGCACATTTTTAC 58.826 50.000 3.78 0.00 0.00 2.01
95 96 1.173913 GAGGCGGGCACATTTTTACT 58.826 50.000 3.78 0.00 0.00 2.24
96 97 1.132453 GAGGCGGGCACATTTTTACTC 59.868 52.381 3.78 0.00 0.00 2.59
97 98 0.179174 GGCGGGCACATTTTTACTCG 60.179 55.000 0.00 0.00 0.00 4.18
98 99 0.796870 GCGGGCACATTTTTACTCGC 60.797 55.000 0.00 0.00 35.34 5.03
99 100 0.179174 CGGGCACATTTTTACTCGCC 60.179 55.000 0.00 0.00 38.85 5.54
100 101 0.179174 GGGCACATTTTTACTCGCCG 60.179 55.000 0.00 0.00 40.52 6.46
101 102 0.796870 GGCACATTTTTACTCGCCGC 60.797 55.000 0.00 0.00 0.00 6.53
102 103 1.125847 GCACATTTTTACTCGCCGCG 61.126 55.000 6.39 6.39 0.00 6.46
103 104 1.125847 CACATTTTTACTCGCCGCGC 61.126 55.000 8.21 0.00 0.00 6.86
122 123 4.532564 CGCGAGCGTTGAGTATATTTAG 57.467 45.455 0.00 0.00 34.35 1.85
123 124 3.361053 CGCGAGCGTTGAGTATATTTAGG 59.639 47.826 0.00 0.00 34.35 2.69
124 125 3.121445 GCGAGCGTTGAGTATATTTAGGC 59.879 47.826 0.00 0.00 0.00 3.93
125 126 3.361053 CGAGCGTTGAGTATATTTAGGCG 59.639 47.826 0.00 0.00 0.00 5.52
126 127 4.543692 GAGCGTTGAGTATATTTAGGCGA 58.456 43.478 0.00 0.00 0.00 5.54
127 128 4.296690 AGCGTTGAGTATATTTAGGCGAC 58.703 43.478 0.00 0.00 0.00 5.19
128 129 4.046462 GCGTTGAGTATATTTAGGCGACA 58.954 43.478 0.00 0.00 0.00 4.35
129 130 4.684703 GCGTTGAGTATATTTAGGCGACAT 59.315 41.667 0.00 0.00 0.00 3.06
130 131 5.388475 GCGTTGAGTATATTTAGGCGACATG 60.388 44.000 0.00 0.00 0.00 3.21
131 132 5.918576 CGTTGAGTATATTTAGGCGACATGA 59.081 40.000 0.00 0.00 0.00 3.07
132 133 6.088217 CGTTGAGTATATTTAGGCGACATGAG 59.912 42.308 0.00 0.00 0.00 2.90
133 134 6.025749 TGAGTATATTTAGGCGACATGAGG 57.974 41.667 0.00 0.00 0.00 3.86
134 135 5.538813 TGAGTATATTTAGGCGACATGAGGT 59.461 40.000 0.00 0.00 0.00 3.85
135 136 6.041637 TGAGTATATTTAGGCGACATGAGGTT 59.958 38.462 0.00 0.00 0.00 3.50
136 137 6.827727 AGTATATTTAGGCGACATGAGGTTT 58.172 36.000 0.00 0.00 0.00 3.27
137 138 7.280356 AGTATATTTAGGCGACATGAGGTTTT 58.720 34.615 0.00 0.00 0.00 2.43
138 139 7.773690 AGTATATTTAGGCGACATGAGGTTTTT 59.226 33.333 0.00 0.00 0.00 1.94
168 169 3.366392 CGCTTTCGTCCATGTTGTG 57.634 52.632 0.00 0.00 0.00 3.33
169 170 0.586319 CGCTTTCGTCCATGTTGTGT 59.414 50.000 0.00 0.00 0.00 3.72
170 171 1.002900 CGCTTTCGTCCATGTTGTGTT 60.003 47.619 0.00 0.00 0.00 3.32
171 172 2.222213 CGCTTTCGTCCATGTTGTGTTA 59.778 45.455 0.00 0.00 0.00 2.41
172 173 3.303461 CGCTTTCGTCCATGTTGTGTTAA 60.303 43.478 0.00 0.00 0.00 2.01
173 174 4.602995 GCTTTCGTCCATGTTGTGTTAAA 58.397 39.130 0.00 0.00 0.00 1.52
174 175 5.219633 GCTTTCGTCCATGTTGTGTTAAAT 58.780 37.500 0.00 0.00 0.00 1.40
175 176 5.689961 GCTTTCGTCCATGTTGTGTTAAATT 59.310 36.000 0.00 0.00 0.00 1.82
176 177 6.858993 GCTTTCGTCCATGTTGTGTTAAATTA 59.141 34.615 0.00 0.00 0.00 1.40
177 178 7.380065 GCTTTCGTCCATGTTGTGTTAAATTAA 59.620 33.333 0.00 0.00 0.00 1.40
178 179 9.239002 CTTTCGTCCATGTTGTGTTAAATTAAA 57.761 29.630 0.00 0.00 0.00 1.52
179 180 8.789881 TTCGTCCATGTTGTGTTAAATTAAAG 57.210 30.769 0.00 0.00 0.00 1.85
180 181 7.364200 TCGTCCATGTTGTGTTAAATTAAAGG 58.636 34.615 0.00 0.00 0.00 3.11
181 182 7.013464 TCGTCCATGTTGTGTTAAATTAAAGGT 59.987 33.333 0.00 0.00 0.00 3.50
182 183 7.650104 CGTCCATGTTGTGTTAAATTAAAGGTT 59.350 33.333 0.00 0.00 0.00 3.50
183 184 9.320352 GTCCATGTTGTGTTAAATTAAAGGTTT 57.680 29.630 0.00 0.00 0.00 3.27
211 212 9.967451 TTAGTGATGATTAGAGATACCTAGGAG 57.033 37.037 17.98 0.00 0.00 3.69
212 213 6.889722 AGTGATGATTAGAGATACCTAGGAGC 59.110 42.308 17.98 1.72 0.00 4.70
213 214 6.096282 GTGATGATTAGAGATACCTAGGAGCC 59.904 46.154 17.98 3.28 0.00 4.70
214 215 4.590918 TGATTAGAGATACCTAGGAGCCG 58.409 47.826 17.98 0.00 0.00 5.52
215 216 3.436577 TTAGAGATACCTAGGAGCCGG 57.563 52.381 17.98 0.00 0.00 6.13
216 217 0.406361 AGAGATACCTAGGAGCCGGG 59.594 60.000 17.98 0.00 0.00 5.73
217 218 0.404812 GAGATACCTAGGAGCCGGGA 59.595 60.000 17.98 0.00 0.00 5.14
218 219 1.006162 GAGATACCTAGGAGCCGGGAT 59.994 57.143 17.98 0.00 0.00 3.85
219 220 1.006162 AGATACCTAGGAGCCGGGATC 59.994 57.143 17.98 3.04 40.35 3.36
220 221 0.323542 ATACCTAGGAGCCGGGATCG 60.324 60.000 17.98 0.00 0.00 3.69
231 232 3.469564 CGGGATCGGTGAAAATGGA 57.530 52.632 0.00 0.00 0.00 3.41
232 233 1.014352 CGGGATCGGTGAAAATGGAC 58.986 55.000 0.00 0.00 0.00 4.02
233 234 1.677518 CGGGATCGGTGAAAATGGACA 60.678 52.381 0.00 0.00 0.00 4.02
234 235 2.442413 GGGATCGGTGAAAATGGACAA 58.558 47.619 0.00 0.00 0.00 3.18
235 236 2.823154 GGGATCGGTGAAAATGGACAAA 59.177 45.455 0.00 0.00 0.00 2.83
236 237 3.257127 GGGATCGGTGAAAATGGACAAAA 59.743 43.478 0.00 0.00 0.00 2.44
237 238 4.081697 GGGATCGGTGAAAATGGACAAAAT 60.082 41.667 0.00 0.00 0.00 1.82
238 239 5.478407 GGATCGGTGAAAATGGACAAAATT 58.522 37.500 0.00 0.00 0.00 1.82
239 240 5.348451 GGATCGGTGAAAATGGACAAAATTG 59.652 40.000 0.00 0.00 0.00 2.32
240 241 4.626042 TCGGTGAAAATGGACAAAATTGG 58.374 39.130 0.00 0.00 0.00 3.16
241 242 4.100189 TCGGTGAAAATGGACAAAATTGGT 59.900 37.500 0.00 0.00 0.00 3.67
242 243 4.447389 CGGTGAAAATGGACAAAATTGGTC 59.553 41.667 0.00 0.00 34.52 4.02
255 256 7.839680 ACAAAATTGGTCCTTATCTGAAACT 57.160 32.000 0.00 0.00 0.00 2.66
256 257 8.250143 ACAAAATTGGTCCTTATCTGAAACTT 57.750 30.769 0.00 0.00 0.00 2.66
257 258 8.704668 ACAAAATTGGTCCTTATCTGAAACTTT 58.295 29.630 0.00 0.00 0.00 2.66
261 262 8.934023 ATTGGTCCTTATCTGAAACTTTAACA 57.066 30.769 0.00 0.00 0.00 2.41
262 263 7.739498 TGGTCCTTATCTGAAACTTTAACAC 57.261 36.000 0.00 0.00 0.00 3.32
263 264 7.284074 TGGTCCTTATCTGAAACTTTAACACA 58.716 34.615 0.00 0.00 0.00 3.72
264 265 7.776030 TGGTCCTTATCTGAAACTTTAACACAA 59.224 33.333 0.00 0.00 0.00 3.33
265 266 8.626526 GGTCCTTATCTGAAACTTTAACACAAA 58.373 33.333 0.00 0.00 0.00 2.83
270 271 7.713764 ATCTGAAACTTTAACACAAAATGGC 57.286 32.000 0.00 0.00 0.00 4.40
271 272 6.045955 TCTGAAACTTTAACACAAAATGGCC 58.954 36.000 0.00 0.00 0.00 5.36
272 273 5.119694 TGAAACTTTAACACAAAATGGCCC 58.880 37.500 0.00 0.00 0.00 5.80
273 274 3.762407 ACTTTAACACAAAATGGCCCC 57.238 42.857 0.00 0.00 0.00 5.80
274 275 3.041946 ACTTTAACACAAAATGGCCCCA 58.958 40.909 0.00 0.00 0.00 4.96
275 276 3.456277 ACTTTAACACAAAATGGCCCCAA 59.544 39.130 0.00 0.00 0.00 4.12
276 277 4.103943 ACTTTAACACAAAATGGCCCCAAT 59.896 37.500 0.00 0.00 0.00 3.16
277 278 2.857186 AACACAAAATGGCCCCAATC 57.143 45.000 0.00 0.00 0.00 2.67
278 279 2.028561 ACACAAAATGGCCCCAATCT 57.971 45.000 0.00 0.00 0.00 2.40
279 280 3.182887 ACACAAAATGGCCCCAATCTA 57.817 42.857 0.00 0.00 0.00 1.98
280 281 3.515562 ACACAAAATGGCCCCAATCTAA 58.484 40.909 0.00 0.00 0.00 2.10
281 282 3.906846 ACACAAAATGGCCCCAATCTAAA 59.093 39.130 0.00 0.00 0.00 1.85
282 283 4.349342 ACACAAAATGGCCCCAATCTAAAA 59.651 37.500 0.00 0.00 0.00 1.52
283 284 5.014018 ACACAAAATGGCCCCAATCTAAAAT 59.986 36.000 0.00 0.00 0.00 1.82
284 285 6.214412 ACACAAAATGGCCCCAATCTAAAATA 59.786 34.615 0.00 0.00 0.00 1.40
285 286 7.092489 ACACAAAATGGCCCCAATCTAAAATAT 60.092 33.333 0.00 0.00 0.00 1.28
286 287 7.774625 CACAAAATGGCCCCAATCTAAAATATT 59.225 33.333 0.00 0.00 0.00 1.28
287 288 8.335484 ACAAAATGGCCCCAATCTAAAATATTT 58.665 29.630 0.00 0.00 0.00 1.40
288 289 8.839343 CAAAATGGCCCCAATCTAAAATATTTC 58.161 33.333 0.00 0.00 0.00 2.17
289 290 7.688918 AATGGCCCCAATCTAAAATATTTCA 57.311 32.000 0.00 0.00 0.00 2.69
290 291 7.876978 ATGGCCCCAATCTAAAATATTTCAT 57.123 32.000 0.00 0.00 0.00 2.57
291 292 7.065120 TGGCCCCAATCTAAAATATTTCATG 57.935 36.000 0.00 0.00 0.00 3.07
292 293 6.843333 TGGCCCCAATCTAAAATATTTCATGA 59.157 34.615 0.00 0.00 0.00 3.07
293 294 7.346698 TGGCCCCAATCTAAAATATTTCATGAA 59.653 33.333 3.38 3.38 0.00 2.57
294 295 8.210265 GGCCCCAATCTAAAATATTTCATGAAA 58.790 33.333 22.52 22.52 34.46 2.69
295 296 9.783081 GCCCCAATCTAAAATATTTCATGAAAT 57.217 29.630 30.80 30.80 42.95 2.17
302 303 9.713684 TCTAAAATATTTCATGAAATGGTCCCT 57.286 29.630 33.94 19.45 46.73 4.20
306 307 9.452287 AAATATTTCATGAAATGGTCCCTTTTG 57.548 29.630 33.94 0.00 46.73 2.44
307 308 3.959535 TCATGAAATGGTCCCTTTTGC 57.040 42.857 0.00 0.00 46.73 3.68
308 309 3.237746 TCATGAAATGGTCCCTTTTGCA 58.762 40.909 0.00 0.00 46.73 4.08
309 310 3.839490 TCATGAAATGGTCCCTTTTGCAT 59.161 39.130 0.00 3.92 46.73 3.96
310 311 3.681593 TGAAATGGTCCCTTTTGCATG 57.318 42.857 2.25 0.00 0.00 4.06
311 312 3.237746 TGAAATGGTCCCTTTTGCATGA 58.762 40.909 0.00 0.00 0.00 3.07
312 313 3.839490 TGAAATGGTCCCTTTTGCATGAT 59.161 39.130 0.00 0.00 0.00 2.45
313 314 3.899052 AATGGTCCCTTTTGCATGATG 57.101 42.857 0.00 0.00 0.00 3.07
314 315 0.896923 TGGTCCCTTTTGCATGATGC 59.103 50.000 11.12 11.12 45.29 3.91
315 316 0.176449 GGTCCCTTTTGCATGATGCC 59.824 55.000 15.70 0.00 44.23 4.40
316 317 0.176449 GTCCCTTTTGCATGATGCCC 59.824 55.000 15.70 0.00 44.23 5.36
317 318 1.142314 CCCTTTTGCATGATGCCCG 59.858 57.895 15.70 0.36 44.23 6.13
318 319 1.142314 CCTTTTGCATGATGCCCGG 59.858 57.895 15.70 6.01 44.23 5.73
319 320 1.142314 CTTTTGCATGATGCCCGGG 59.858 57.895 19.09 19.09 44.23 5.73
320 321 2.300850 CTTTTGCATGATGCCCGGGG 62.301 60.000 25.28 9.31 44.23 5.73
337 338 2.358003 GCTAGGGCGCCATGCTAG 60.358 66.667 30.85 27.56 45.43 3.42
338 339 2.872388 GCTAGGGCGCCATGCTAGA 61.872 63.158 30.84 10.87 45.43 2.43
339 340 1.978473 CTAGGGCGCCATGCTAGAT 59.022 57.895 30.85 5.35 45.43 1.98
340 341 1.186200 CTAGGGCGCCATGCTAGATA 58.814 55.000 30.85 2.36 45.43 1.98
341 342 1.135915 CTAGGGCGCCATGCTAGATAG 59.864 57.143 30.85 9.89 45.43 2.08
352 353 3.822607 CTAGATAGCATGACGCCCC 57.177 57.895 0.00 0.00 44.04 5.80
353 354 0.109086 CTAGATAGCATGACGCCCCG 60.109 60.000 0.00 0.00 44.04 5.73
354 355 1.532604 TAGATAGCATGACGCCCCGG 61.533 60.000 0.00 0.00 44.04 5.73
355 356 3.883744 GATAGCATGACGCCCCGGG 62.884 68.421 15.80 15.80 44.04 5.73
358 359 4.476752 GCATGACGCCCCGGGTTA 62.477 66.667 21.85 0.00 32.94 2.85
359 360 2.203015 CATGACGCCCCGGGTTAG 60.203 66.667 21.85 12.73 0.00 2.34
360 361 3.476419 ATGACGCCCCGGGTTAGG 61.476 66.667 21.85 4.65 0.00 2.69
367 368 3.476419 CCCGGGTTAGGGCGTCAT 61.476 66.667 14.18 0.00 45.72 3.06
368 369 2.203015 CCGGGTTAGGGCGTCATG 60.203 66.667 0.00 0.00 0.00 3.07
369 370 2.895372 CGGGTTAGGGCGTCATGC 60.895 66.667 0.00 0.00 45.38 4.06
370 371 2.590092 GGGTTAGGGCGTCATGCT 59.410 61.111 0.00 0.00 45.43 3.79
371 372 1.827394 GGGTTAGGGCGTCATGCTA 59.173 57.895 0.00 0.00 45.43 3.49
372 373 0.396811 GGGTTAGGGCGTCATGCTAT 59.603 55.000 0.00 0.00 45.43 2.97
373 374 1.202770 GGGTTAGGGCGTCATGCTATT 60.203 52.381 0.00 0.00 45.43 1.73
374 375 2.572290 GGTTAGGGCGTCATGCTATTT 58.428 47.619 0.00 0.00 45.43 1.40
375 376 2.290641 GGTTAGGGCGTCATGCTATTTG 59.709 50.000 0.00 0.00 45.43 2.32
376 377 2.254546 TAGGGCGTCATGCTATTTGG 57.745 50.000 0.00 0.00 45.43 3.28
377 378 1.103398 AGGGCGTCATGCTATTTGGC 61.103 55.000 0.00 0.00 45.43 4.52
378 379 1.383456 GGGCGTCATGCTATTTGGCA 61.383 55.000 0.00 0.00 46.63 4.92
384 385 2.806929 TGCTATTTGGCATGGCGC 59.193 55.556 15.27 11.69 37.29 6.53
409 410 4.935495 CGGGGCGCCATGCTACAT 62.935 66.667 30.85 0.00 45.43 2.29
410 411 3.289834 GGGGCGCCATGCTACATG 61.290 66.667 30.85 0.48 45.43 3.21
411 412 2.516930 GGGCGCCATGCTACATGT 60.517 61.111 30.85 2.69 45.43 3.21
412 413 2.546494 GGGCGCCATGCTACATGTC 61.546 63.158 30.85 1.22 45.43 3.06
413 414 2.628106 GCGCCATGCTACATGTCG 59.372 61.111 0.00 6.64 41.73 4.35
414 415 2.628106 CGCCATGCTACATGTCGC 59.372 61.111 15.06 15.06 0.00 5.19
415 416 1.884464 CGCCATGCTACATGTCGCT 60.884 57.895 21.42 6.26 0.00 4.93
416 417 0.597377 CGCCATGCTACATGTCGCTA 60.597 55.000 21.42 9.79 0.00 4.26
417 418 1.800805 GCCATGCTACATGTCGCTAT 58.199 50.000 21.42 11.44 0.00 2.97
418 419 1.728971 GCCATGCTACATGTCGCTATC 59.271 52.381 21.42 6.37 0.00 2.08
419 420 2.867647 GCCATGCTACATGTCGCTATCA 60.868 50.000 21.42 3.45 0.00 2.15
420 421 3.593096 CCATGCTACATGTCGCTATCAT 58.407 45.455 21.42 5.62 0.00 2.45
421 422 3.370061 CCATGCTACATGTCGCTATCATG 59.630 47.826 21.42 15.85 45.41 3.07
422 423 3.030668 TGCTACATGTCGCTATCATGG 57.969 47.619 21.42 0.00 44.57 3.66
423 424 1.728971 GCTACATGTCGCTATCATGGC 59.271 52.381 14.69 7.43 44.57 4.40
429 430 2.656646 CGCTATCATGGCGCCCTA 59.343 61.111 26.77 6.41 45.83 3.53
430 431 1.446792 CGCTATCATGGCGCCCTAG 60.447 63.158 26.77 19.19 45.83 3.02
431 432 1.743252 GCTATCATGGCGCCCTAGC 60.743 63.158 26.77 24.39 0.00 3.42
449 450 4.899239 CCGGGGCGTCATGCTCTC 62.899 72.222 0.00 0.00 46.29 3.20
450 451 3.842923 CGGGGCGTCATGCTCTCT 61.843 66.667 0.00 0.00 46.29 3.10
451 452 2.490148 CGGGGCGTCATGCTCTCTA 61.490 63.158 0.00 0.00 46.29 2.43
452 453 1.365633 GGGGCGTCATGCTCTCTAG 59.634 63.158 0.00 0.00 46.29 2.43
453 454 2.707529 GGGGCGTCATGCTCTCTAGC 62.708 65.000 0.00 0.00 46.29 3.42
462 463 3.136750 CTCTCTAGCATGGCGCCT 58.863 61.111 29.70 9.99 44.04 5.52
463 464 1.445095 CTCTCTAGCATGGCGCCTT 59.555 57.895 29.70 19.97 44.04 4.35
464 465 0.879400 CTCTCTAGCATGGCGCCTTG 60.879 60.000 32.10 32.10 44.04 3.61
465 466 1.890979 CTCTAGCATGGCGCCTTGG 60.891 63.158 35.18 22.63 44.04 3.61
466 467 3.589881 CTAGCATGGCGCCTTGGC 61.590 66.667 35.18 29.49 44.04 4.52
467 468 4.113815 TAGCATGGCGCCTTGGCT 62.114 61.111 35.18 33.36 44.04 4.75
521 522 9.893634 TCGTAAAATATTTTTAGACTGGGATCA 57.106 29.630 18.14 0.00 0.00 2.92
532 533 9.527157 TTTTAGACTGGGATCATTTTATGTTGA 57.473 29.630 0.00 0.00 0.00 3.18
533 534 9.527157 TTTAGACTGGGATCATTTTATGTTGAA 57.473 29.630 0.00 0.00 0.00 2.69
534 535 7.636150 AGACTGGGATCATTTTATGTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
535 536 7.177878 AGACTGGGATCATTTTATGTTGAAGT 58.822 34.615 0.00 0.00 0.00 3.01
536 537 7.671398 AGACTGGGATCATTTTATGTTGAAGTT 59.329 33.333 0.00 0.00 0.00 2.66
537 538 8.193953 ACTGGGATCATTTTATGTTGAAGTTT 57.806 30.769 0.00 0.00 0.00 2.66
538 539 8.650490 ACTGGGATCATTTTATGTTGAAGTTTT 58.350 29.630 0.00 0.00 0.00 2.43
549 550 9.528489 TTTATGTTGAAGTTTTAGATAAGGGCT 57.472 29.630 0.00 0.00 0.00 5.19
551 552 8.738645 ATGTTGAAGTTTTAGATAAGGGCTAG 57.261 34.615 0.00 0.00 0.00 3.42
552 553 7.686434 TGTTGAAGTTTTAGATAAGGGCTAGT 58.314 34.615 0.00 0.00 0.00 2.57
553 554 8.161425 TGTTGAAGTTTTAGATAAGGGCTAGTT 58.839 33.333 0.00 0.00 0.00 2.24
554 555 9.011095 GTTGAAGTTTTAGATAAGGGCTAGTTT 57.989 33.333 0.00 0.00 0.00 2.66
555 556 8.561738 TGAAGTTTTAGATAAGGGCTAGTTTG 57.438 34.615 0.00 0.00 0.00 2.93
556 557 8.161425 TGAAGTTTTAGATAAGGGCTAGTTTGT 58.839 33.333 0.00 0.00 0.00 2.83
557 558 8.935614 AAGTTTTAGATAAGGGCTAGTTTGTT 57.064 30.769 0.00 0.00 0.00 2.83
558 559 8.563123 AGTTTTAGATAAGGGCTAGTTTGTTC 57.437 34.615 0.00 0.00 0.00 3.18
559 560 8.161425 AGTTTTAGATAAGGGCTAGTTTGTTCA 58.839 33.333 0.00 0.00 0.00 3.18
560 561 8.957466 GTTTTAGATAAGGGCTAGTTTGTTCAT 58.043 33.333 0.00 0.00 0.00 2.57
561 562 9.528489 TTTTAGATAAGGGCTAGTTTGTTCATT 57.472 29.630 0.00 0.00 0.00 2.57
562 563 9.528489 TTTAGATAAGGGCTAGTTTGTTCATTT 57.472 29.630 0.00 0.00 0.00 2.32
563 564 9.528489 TTAGATAAGGGCTAGTTTGTTCATTTT 57.472 29.630 0.00 0.00 0.00 1.82
564 565 8.056407 AGATAAGGGCTAGTTTGTTCATTTTC 57.944 34.615 0.00 0.00 0.00 2.29
565 566 7.669722 AGATAAGGGCTAGTTTGTTCATTTTCA 59.330 33.333 0.00 0.00 0.00 2.69
566 567 5.453567 AGGGCTAGTTTGTTCATTTTCAC 57.546 39.130 0.00 0.00 0.00 3.18
567 568 4.280929 AGGGCTAGTTTGTTCATTTTCACC 59.719 41.667 0.00 0.00 0.00 4.02
568 569 4.280929 GGGCTAGTTTGTTCATTTTCACCT 59.719 41.667 0.00 0.00 0.00 4.00
574 575 5.011023 AGTTTGTTCATTTTCACCTGGGATC 59.989 40.000 0.00 0.00 0.00 3.36
619 624 0.306533 CTCCGTCCACCGTGTTTTTG 59.693 55.000 0.00 0.00 33.66 2.44
647 652 1.909141 CTTGTGCTCGCTCCTTGCTG 61.909 60.000 0.00 0.00 40.11 4.41
731 740 2.261671 GACGGACACCAGATGCGT 59.738 61.111 0.00 0.00 30.77 5.24
820 841 4.410033 GGGTCGGGAGGGAGGGAA 62.410 72.222 0.00 0.00 0.00 3.97
821 842 2.764547 GGTCGGGAGGGAGGGAAG 60.765 72.222 0.00 0.00 0.00 3.46
822 843 2.764547 GTCGGGAGGGAGGGAAGG 60.765 72.222 0.00 0.00 0.00 3.46
823 844 4.089757 TCGGGAGGGAGGGAAGGG 62.090 72.222 0.00 0.00 0.00 3.95
824 845 4.089757 CGGGAGGGAGGGAAGGGA 62.090 72.222 0.00 0.00 0.00 4.20
880 901 2.030562 CCGACGGCAAGGACAAGT 59.969 61.111 0.00 0.00 0.00 3.16
881 902 2.317609 CCGACGGCAAGGACAAGTG 61.318 63.158 0.00 0.00 0.00 3.16
882 903 1.594293 CGACGGCAAGGACAAGTGT 60.594 57.895 0.00 0.00 0.00 3.55
884 905 1.507141 GACGGCAAGGACAAGTGTGG 61.507 60.000 0.00 0.00 0.00 4.17
890 911 2.668550 GGACAAGTGTGGCCGACC 60.669 66.667 0.00 0.00 45.39 4.79
891 912 3.041940 GACAAGTGTGGCCGACCG 61.042 66.667 0.00 0.00 39.70 4.79
892 913 4.619227 ACAAGTGTGGCCGACCGG 62.619 66.667 0.00 0.00 39.70 5.28
974 1544 3.655615 TGGTAAACACAACCAAGGACT 57.344 42.857 0.00 0.00 43.99 3.85
977 1547 0.738389 AAACACAACCAAGGACTGCG 59.262 50.000 0.00 0.00 0.00 5.18
1029 1599 4.292178 GAGGGGAGAGGCATCGCG 62.292 72.222 0.00 0.00 33.16 5.87
1031 1601 4.593864 GGGGAGAGGCATCGCGTC 62.594 72.222 5.77 0.00 42.77 5.19
1032 1602 4.593864 GGGAGAGGCATCGCGTCC 62.594 72.222 5.77 3.13 43.36 4.79
1033 1603 4.593864 GGAGAGGCATCGCGTCCC 62.594 72.222 5.77 5.09 43.36 4.46
1086 1656 3.680786 CACCACCGAGGCAGACGA 61.681 66.667 0.00 0.00 43.14 4.20
1087 1657 3.374402 ACCACCGAGGCAGACGAG 61.374 66.667 0.00 0.00 43.14 4.18
1208 1787 2.952783 CGTACCCGCGTGATTCCG 60.953 66.667 4.92 0.00 0.00 4.30
1380 1967 4.779733 TCCTCCACCTCCGCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
1582 2175 0.812811 CCGATCGGTCTCCTACGACA 60.813 60.000 26.35 0.00 42.39 4.35
1777 2388 3.009301 TCGTCGTCAAGGAAGAGTTTC 57.991 47.619 0.00 0.00 0.00 2.78
2103 2714 0.320247 CGGATGACAGCCAGGATAGC 60.320 60.000 10.94 0.00 0.00 2.97
2582 3193 3.055167 TGGTCCAAGTCACAGGTATGATG 60.055 47.826 0.00 0.00 0.00 3.07
2670 3281 0.321346 CCACAACCCAATTTCTGCCC 59.679 55.000 0.00 0.00 0.00 5.36
2681 3292 5.876460 CCCAATTTCTGCCCAATTTAGAAAG 59.124 40.000 0.00 0.00 41.91 2.62
2852 3466 6.073058 GCTGACTGTAAATGATGAACTGACAA 60.073 38.462 0.00 0.00 0.00 3.18
2996 3610 5.048782 TGCATAAAACTAACTGAACCTGCTG 60.049 40.000 0.00 0.00 0.00 4.41
3051 3665 1.133945 TGCAGTTTGCCTGTTCTGGTA 60.134 47.619 0.00 0.00 44.23 3.25
3290 3904 6.265196 TGACACAAGCTTCTCAATTTAACCAT 59.735 34.615 0.00 0.00 0.00 3.55
3464 4078 6.422776 AGATTGTCGTGCCTAAATTTACAG 57.577 37.500 0.00 0.00 0.00 2.74
3482 4096 6.582677 TTACAGTGTTGGAAATATGTTGGG 57.417 37.500 0.00 0.00 0.00 4.12
3512 4127 7.752239 AGTCTTTTCATTCATTGATGTAAAGCG 59.248 33.333 15.30 0.00 40.88 4.68
3537 4152 8.920665 CGTGATATGAGGTTTTGCAAAATTTAA 58.079 29.630 26.24 13.83 0.00 1.52
3586 4201 8.197439 GTGCCAGTATATTTGAGCCTTATTTTT 58.803 33.333 0.00 0.00 0.00 1.94
3616 4231 5.508994 CCATTATTGCCGATTTTACCCCTTC 60.509 44.000 0.00 0.00 0.00 3.46
3628 4243 0.846870 ACCCCTTCTAGGCCAAGCTT 60.847 55.000 5.01 0.00 32.73 3.74
3813 4434 9.778741 CTATGTTAGGCTTAAATGTATCTTGGA 57.221 33.333 0.00 0.00 0.00 3.53
3814 4435 8.682936 ATGTTAGGCTTAAATGTATCTTGGAG 57.317 34.615 0.00 0.00 0.00 3.86
3884 4505 5.860941 TGGAGTTTGAATTTTAGTTGCCA 57.139 34.783 0.00 0.00 0.00 4.92
3969 4593 8.890718 ACATTTCTGATGTTCAGTATCATTCAG 58.109 33.333 4.56 0.00 44.58 3.02
4021 4645 3.900601 TGCATAAACATTGTTGGGTCCTT 59.099 39.130 2.13 0.00 0.00 3.36
4025 4649 2.746279 ACATTGTTGGGTCCTTGTCA 57.254 45.000 0.00 0.00 0.00 3.58
4100 4724 7.224362 CCAAACTTCACAATTTGCAATAGTGAA 59.776 33.333 26.35 26.35 44.25 3.18
4116 4740 1.353103 GAATCCAGCAATGCGTCCG 59.647 57.895 0.00 0.00 0.00 4.79
4158 4782 6.714810 TGCTACCACTGTTTGAATCTTGTAAT 59.285 34.615 0.00 0.00 0.00 1.89
4199 4823 7.641760 TCGGGTGTCTTTACAAAATTTCTTAC 58.358 34.615 0.00 0.00 37.36 2.34
4252 4882 6.480524 TCGTCTTCAATGGATAAAACAGTG 57.519 37.500 0.00 0.00 35.44 3.66
4262 4892 8.739039 CAATGGATAAAACAGTGAAGTTATGGA 58.261 33.333 0.00 0.00 36.11 3.41
4390 5020 5.649831 GTCAGCATTATCCTCAGTTTTCCTT 59.350 40.000 0.00 0.00 0.00 3.36
4586 5216 4.285260 ACAGGTTTGTATACTTTCGACCCT 59.715 41.667 4.17 0.00 35.25 4.34
4701 5331 1.028905 CACATCGGGTCTCTCTCTCC 58.971 60.000 0.00 0.00 0.00 3.71
4794 5427 1.286553 TGACCCTTTGTGTGACCCTTT 59.713 47.619 0.00 0.00 0.00 3.11
4898 5531 7.657336 TGGATTTCAGGTGCTTACTTTTAAAG 58.343 34.615 2.81 2.81 0.00 1.85
4908 5541 7.308408 GGTGCTTACTTTTAAAGACTTCCGAAT 60.308 37.037 12.02 0.00 0.00 3.34
4909 5542 7.745155 GTGCTTACTTTTAAAGACTTCCGAATC 59.255 37.037 12.02 0.00 0.00 2.52
4910 5543 7.660208 TGCTTACTTTTAAAGACTTCCGAATCT 59.340 33.333 12.02 0.00 0.00 2.40
4911 5544 7.958025 GCTTACTTTTAAAGACTTCCGAATCTG 59.042 37.037 12.02 0.00 0.00 2.90
4912 5545 8.897872 TTACTTTTAAAGACTTCCGAATCTGT 57.102 30.769 12.02 0.00 0.00 3.41
4949 5582 4.758674 CAGGCCATACAGATGATAACCTTG 59.241 45.833 5.01 0.00 34.73 3.61
4950 5583 4.074970 GGCCATACAGATGATAACCTTGG 58.925 47.826 0.00 0.00 34.73 3.61
5094 5727 9.729281 TTTAAAGGTATCAAGGTCTTAACGAAT 57.271 29.630 0.00 0.00 0.00 3.34
5143 5778 4.261197 GCTATTATCTTCAAGGTTTGGCCG 60.261 45.833 0.00 0.00 43.70 6.13
5180 5829 7.465513 CGAGACACTGTTGCTTTAAAGTTTACT 60.466 37.037 16.38 4.76 0.00 2.24
5181 5830 8.051901 AGACACTGTTGCTTTAAAGTTTACTT 57.948 30.769 16.38 0.00 37.91 2.24
5182 5831 7.968405 AGACACTGTTGCTTTAAAGTTTACTTG 59.032 33.333 16.38 13.50 36.12 3.16
5183 5832 7.599171 ACACTGTTGCTTTAAAGTTTACTTGT 58.401 30.769 16.38 13.97 36.12 3.16
5184 5833 8.732531 ACACTGTTGCTTTAAAGTTTACTTGTA 58.267 29.630 16.38 0.00 36.12 2.41
5185 5834 9.221775 CACTGTTGCTTTAAAGTTTACTTGTAG 57.778 33.333 16.38 7.99 36.12 2.74
5186 5835 8.953313 ACTGTTGCTTTAAAGTTTACTTGTAGT 58.047 29.630 16.38 8.48 36.12 2.73
5187 5836 9.783256 CTGTTGCTTTAAAGTTTACTTGTAGTT 57.217 29.630 16.38 0.00 36.12 2.24
5374 6023 4.514441 CAGTTTCTGCTGTCATGTTCTTCT 59.486 41.667 0.00 0.00 0.00 2.85
5410 6059 4.566004 CCAAAACTCGTCAGAATCCACTA 58.434 43.478 0.00 0.00 0.00 2.74
5444 6093 4.137116 AGCTCGTAATGTCCAATTAGCA 57.863 40.909 0.00 0.00 0.00 3.49
5543 6198 2.649531 TCACATTTCCAGGTTTCCGT 57.350 45.000 0.00 0.00 0.00 4.69
5651 6306 3.853597 AAACGACGACGGCCCTGAC 62.854 63.158 12.58 0.00 44.46 3.51
5654 6309 4.477975 GACGACGGCCCTGACGAG 62.478 72.222 9.18 0.00 35.20 4.18
5657 6312 4.373116 GACGGCCCTGACGAGCAA 62.373 66.667 0.00 0.00 35.20 3.91
5658 6313 3.876589 GACGGCCCTGACGAGCAAA 62.877 63.158 0.00 0.00 35.20 3.68
5659 6314 3.121030 CGGCCCTGACGAGCAAAG 61.121 66.667 0.00 0.00 35.20 2.77
5660 6315 2.347490 GGCCCTGACGAGCAAAGA 59.653 61.111 0.00 0.00 0.00 2.52
5661 6316 1.302511 GGCCCTGACGAGCAAAGAA 60.303 57.895 0.00 0.00 0.00 2.52
5662 6317 1.301677 GGCCCTGACGAGCAAAGAAG 61.302 60.000 0.00 0.00 0.00 2.85
5663 6318 1.916697 GCCCTGACGAGCAAAGAAGC 61.917 60.000 0.00 0.00 0.00 3.86
5666 6321 0.165511 CTGACGAGCAAAGAAGCAGC 59.834 55.000 0.00 0.00 36.85 5.25
5702 6357 0.110823 GCGTCGTTTCTGTCGCAAAT 60.111 50.000 0.00 0.00 46.40 2.32
6133 6791 4.750598 CGTCAGAGTATAGTAGCAGCAGTA 59.249 45.833 0.00 0.00 0.00 2.74
6134 6792 5.107259 CGTCAGAGTATAGTAGCAGCAGTAG 60.107 48.000 0.00 0.00 0.00 2.57
6136 6794 4.457603 CAGAGTATAGTAGCAGCAGTAGGG 59.542 50.000 0.00 0.00 0.00 3.53
6191 6865 0.238289 CTGGTTTGCTGTTAGCGGTG 59.762 55.000 0.00 0.00 46.26 4.94
6221 6895 4.382728 GCGAATGCGATTTGGGTG 57.617 55.556 0.00 0.00 40.82 4.61
6223 6897 0.730265 GCGAATGCGATTTGGGTGTA 59.270 50.000 0.00 0.00 40.82 2.90
6286 6960 2.682856 GTTTGTACGCCCACATGATGAT 59.317 45.455 0.00 0.00 0.00 2.45
6332 7006 1.649664 CGGCTGGAGTGAAATCTCTG 58.350 55.000 0.00 0.00 35.11 3.35
6338 7012 1.363744 GAGTGAAATCTCTGGCCACG 58.636 55.000 0.00 0.00 33.37 4.94
6353 7033 0.381801 CCACGCCCATTTGTATCTGC 59.618 55.000 0.00 0.00 0.00 4.26
6420 7100 1.539388 CCTTGTGTGTGTGTGTGTGTT 59.461 47.619 0.00 0.00 0.00 3.32
6422 7102 3.551863 CCTTGTGTGTGTGTGTGTGTTTT 60.552 43.478 0.00 0.00 0.00 2.43
6455 7144 6.543831 CCCTTTCTGACATATTCTTGTAAGGG 59.456 42.308 0.00 0.00 38.44 3.95
6492 7182 7.972832 CAGGTGTATACATACATGCAGATAGAG 59.027 40.741 9.18 0.00 44.25 2.43
6500 7190 3.715495 ACATGCAGATAGAGAAGCGAAG 58.285 45.455 0.00 0.00 0.00 3.79
6501 7191 2.879002 TGCAGATAGAGAAGCGAAGG 57.121 50.000 0.00 0.00 0.00 3.46
6503 7193 2.099921 TGCAGATAGAGAAGCGAAGGAC 59.900 50.000 0.00 0.00 0.00 3.85
6522 7212 3.243975 GGACGAGTTTTCTTAGTGGTGGA 60.244 47.826 0.00 0.00 0.00 4.02
6563 7253 1.683917 CCAGGTCTTCTCATACGGGAG 59.316 57.143 0.00 0.00 36.21 4.30
6564 7254 1.683917 CAGGTCTTCTCATACGGGAGG 59.316 57.143 1.91 0.00 35.58 4.30
6565 7255 1.041437 GGTCTTCTCATACGGGAGGG 58.959 60.000 1.91 0.00 35.58 4.30
6566 7256 1.411216 GGTCTTCTCATACGGGAGGGA 60.411 57.143 1.91 0.00 35.58 4.20
6571 7261 1.074084 TCTCATACGGGAGGGAGCTAG 59.926 57.143 0.00 0.00 35.58 3.42
6608 7298 5.604010 AATCTCGAGTTCTGAAGCTTTTG 57.396 39.130 13.13 0.00 0.00 2.44
6616 7306 0.606604 CTGAAGCTTTTGGGCTGCAT 59.393 50.000 0.00 0.00 45.67 3.96
6620 7424 0.322648 AGCTTTTGGGCTGCATTTCC 59.677 50.000 0.50 0.00 41.43 3.13
6655 7459 2.028476 TCTATCGTTCCACTGTGGGTTG 60.028 50.000 25.67 15.24 38.32 3.77
6656 7460 0.889186 ATCGTTCCACTGTGGGTTGC 60.889 55.000 25.67 12.51 38.32 4.17
6657 7461 1.525995 CGTTCCACTGTGGGTTGCT 60.526 57.895 25.67 0.00 38.32 3.91
6658 7462 1.101049 CGTTCCACTGTGGGTTGCTT 61.101 55.000 25.67 0.00 38.32 3.91
6659 7463 1.111277 GTTCCACTGTGGGTTGCTTT 58.889 50.000 25.67 0.00 38.32 3.51
6704 7617 0.043053 CTAATTGCACCGACATCGCG 60.043 55.000 0.00 0.00 38.18 5.87
6739 7652 2.185350 CCACGGTAGCAGCCTGAG 59.815 66.667 0.00 0.00 0.00 3.35
6780 7693 2.361119 TGCGATGTGATACTACTGACCC 59.639 50.000 0.00 0.00 0.00 4.46
6814 7727 2.308039 GGACGACACCAGAACGCAC 61.308 63.158 0.00 0.00 0.00 5.34
6817 7730 3.712881 GACACCAGAACGCACGGC 61.713 66.667 0.00 0.00 0.00 5.68
6904 7830 2.334946 TGCCACTTTCCAGATGCGC 61.335 57.895 0.00 0.00 0.00 6.09
6925 8467 2.351726 CCGTCTCCGTTGAATTGAATCC 59.648 50.000 0.00 0.00 0.00 3.01
6926 8468 3.262420 CGTCTCCGTTGAATTGAATCCT 58.738 45.455 0.00 0.00 0.00 3.24
6927 8469 3.307242 CGTCTCCGTTGAATTGAATCCTC 59.693 47.826 0.00 0.00 0.00 3.71
6941 8483 5.429681 TGAATCCTCCGGTTTCTGATTTA 57.570 39.130 0.00 0.00 33.82 1.40
6943 8485 3.622166 TCCTCCGGTTTCTGATTTACC 57.378 47.619 0.00 0.00 0.00 2.85
6971 8515 4.776743 CAACTCCACAAACTTCAAGATCG 58.223 43.478 0.00 0.00 0.00 3.69
7048 8630 1.604693 CCACGGTTTAGTGCGAGTCTT 60.605 52.381 0.00 0.00 40.59 3.01
7097 8679 5.410924 TGAGATCAGATGGTTTAGTCAACG 58.589 41.667 0.00 0.00 36.05 4.10
7099 8681 3.394674 TCAGATGGTTTAGTCAACGCA 57.605 42.857 0.00 0.00 36.05 5.24
7116 8712 9.801873 AGTCAACGCATTTATTTATTAGCAAAT 57.198 25.926 0.00 0.00 32.91 2.32
7153 8749 3.132289 TGAGTGGAAATAGATCGACCCAC 59.868 47.826 12.74 12.74 43.08 4.61
7163 8759 4.819105 AGATCGACCCACATAAAAGTGA 57.181 40.909 0.00 0.00 42.05 3.41
7166 8762 4.545208 TCGACCCACATAAAAGTGATCA 57.455 40.909 0.00 0.00 42.05 2.92
7172 8768 5.104374 CCCACATAAAAGTGATCAACATGC 58.896 41.667 0.00 0.00 42.05 4.06
7177 8773 4.510038 AAAAGTGATCAACATGCCTCAC 57.490 40.909 0.00 8.64 38.59 3.51
7178 8774 2.865119 AGTGATCAACATGCCTCACA 57.135 45.000 15.56 0.87 40.32 3.58
7179 8775 3.144657 AGTGATCAACATGCCTCACAA 57.855 42.857 15.56 0.00 40.32 3.33
7180 8776 3.693807 AGTGATCAACATGCCTCACAAT 58.306 40.909 15.56 0.40 40.32 2.71
7181 8777 3.693085 AGTGATCAACATGCCTCACAATC 59.307 43.478 15.56 2.63 40.32 2.67
7182 8778 3.018856 TGATCAACATGCCTCACAATCC 58.981 45.455 0.00 0.00 0.00 3.01
7183 8779 2.885135 TCAACATGCCTCACAATCCT 57.115 45.000 0.00 0.00 0.00 3.24
7184 8780 2.715046 TCAACATGCCTCACAATCCTC 58.285 47.619 0.00 0.00 0.00 3.71
7185 8781 2.040145 TCAACATGCCTCACAATCCTCA 59.960 45.455 0.00 0.00 0.00 3.86
7186 8782 3.021695 CAACATGCCTCACAATCCTCAT 58.978 45.455 0.00 0.00 0.00 2.90
7187 8783 2.651455 ACATGCCTCACAATCCTCATG 58.349 47.619 0.00 0.00 37.78 3.07
7188 8784 1.954382 CATGCCTCACAATCCTCATGG 59.046 52.381 0.00 0.00 0.00 3.66
7189 8785 0.256752 TGCCTCACAATCCTCATGGG 59.743 55.000 0.00 0.00 0.00 4.00
7200 8796 2.907892 TCCTCATGGGACTTCTCAAGT 58.092 47.619 0.00 0.00 46.38 3.16
7230 8826 5.909621 AAAATGAGCTTGCACATCATAGT 57.090 34.783 6.04 0.00 33.40 2.12
7231 8827 4.895224 AATGAGCTTGCACATCATAGTG 57.105 40.909 6.04 0.00 42.37 2.74
7232 8828 3.339253 TGAGCTTGCACATCATAGTGT 57.661 42.857 0.00 0.00 41.52 3.55
7233 8829 3.678289 TGAGCTTGCACATCATAGTGTT 58.322 40.909 0.00 0.00 41.52 3.32
7234 8830 4.074259 TGAGCTTGCACATCATAGTGTTT 58.926 39.130 0.00 0.00 41.52 2.83
7235 8831 4.154737 TGAGCTTGCACATCATAGTGTTTC 59.845 41.667 0.00 0.00 41.52 2.78
7236 8832 3.441572 AGCTTGCACATCATAGTGTTTCC 59.558 43.478 0.00 0.00 41.52 3.13
7237 8833 3.191162 GCTTGCACATCATAGTGTTTCCA 59.809 43.478 0.00 0.00 41.52 3.53
7238 8834 4.321156 GCTTGCACATCATAGTGTTTCCAA 60.321 41.667 0.00 0.00 41.52 3.53
7239 8835 5.771469 CTTGCACATCATAGTGTTTCCAAA 58.229 37.500 0.00 0.00 41.52 3.28
7240 8836 5.981088 TGCACATCATAGTGTTTCCAAAT 57.019 34.783 0.00 0.00 41.52 2.32
7241 8837 7.459795 TTGCACATCATAGTGTTTCCAAATA 57.540 32.000 0.00 0.00 41.52 1.40
7242 8838 7.459795 TGCACATCATAGTGTTTCCAAATAA 57.540 32.000 0.00 0.00 41.52 1.40
7243 8839 7.890515 TGCACATCATAGTGTTTCCAAATAAA 58.109 30.769 0.00 0.00 41.52 1.40
7244 8840 8.363390 TGCACATCATAGTGTTTCCAAATAAAA 58.637 29.630 0.00 0.00 41.52 1.52
7245 8841 9.369904 GCACATCATAGTGTTTCCAAATAAAAT 57.630 29.630 0.00 0.00 41.52 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.077184 TCACCACCGATGACCGCC 62.077 66.667 0.00 0.00 36.84 6.13
18 19 2.813908 GTCACCACCGATGACCGC 60.814 66.667 0.00 0.00 40.56 5.68
19 20 2.506217 CGTCACCACCGATGACCG 60.506 66.667 0.00 0.00 42.97 4.79
20 21 2.125673 CCGTCACCACCGATGACC 60.126 66.667 0.00 0.00 42.97 4.02
21 22 2.813908 GCCGTCACCACCGATGAC 60.814 66.667 0.00 0.00 42.57 3.06
22 23 4.429212 CGCCGTCACCACCGATGA 62.429 66.667 0.00 0.00 0.00 2.92
23 24 4.429212 TCGCCGTCACCACCGATG 62.429 66.667 0.00 0.00 0.00 3.84
24 25 4.430765 GTCGCCGTCACCACCGAT 62.431 66.667 0.00 0.00 31.96 4.18
27 28 4.430765 ATCGTCGCCGTCACCACC 62.431 66.667 0.00 0.00 35.01 4.61
28 29 3.179265 CATCGTCGCCGTCACCAC 61.179 66.667 0.00 0.00 35.01 4.16
29 30 4.429212 CCATCGTCGCCGTCACCA 62.429 66.667 0.00 0.00 35.01 4.17
31 32 3.636313 TTCCCATCGTCGCCGTCAC 62.636 63.158 0.00 0.00 35.01 3.67
32 33 3.350909 CTTCCCATCGTCGCCGTCA 62.351 63.158 0.00 0.00 35.01 4.35
33 34 2.582498 CTTCCCATCGTCGCCGTC 60.582 66.667 0.00 0.00 35.01 4.79
34 35 4.143333 CCTTCCCATCGTCGCCGT 62.143 66.667 0.00 0.00 35.01 5.68
35 36 3.833645 TCCTTCCCATCGTCGCCG 61.834 66.667 0.00 0.00 0.00 6.46
36 37 2.202892 GTCCTTCCCATCGTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
37 38 1.810030 GTGTCCTTCCCATCGTCGC 60.810 63.158 0.00 0.00 0.00 5.19
38 39 0.458543 CAGTGTCCTTCCCATCGTCG 60.459 60.000 0.00 0.00 0.00 5.12
39 40 0.741221 GCAGTGTCCTTCCCATCGTC 60.741 60.000 0.00 0.00 0.00 4.20
40 41 1.296715 GCAGTGTCCTTCCCATCGT 59.703 57.895 0.00 0.00 0.00 3.73
41 42 1.450312 GGCAGTGTCCTTCCCATCG 60.450 63.158 0.00 0.00 0.00 3.84
42 43 1.450312 CGGCAGTGTCCTTCCCATC 60.450 63.158 0.00 0.00 0.00 3.51
43 44 2.671070 CGGCAGTGTCCTTCCCAT 59.329 61.111 0.00 0.00 0.00 4.00
44 45 4.329545 GCGGCAGTGTCCTTCCCA 62.330 66.667 0.00 0.00 0.00 4.37
45 46 3.842925 TTGCGGCAGTGTCCTTCCC 62.843 63.158 1.67 0.00 0.00 3.97
46 47 2.281484 TTGCGGCAGTGTCCTTCC 60.281 61.111 1.67 0.00 0.00 3.46
47 48 2.328099 CCTTGCGGCAGTGTCCTTC 61.328 63.158 1.67 0.00 0.00 3.46
48 49 2.281761 CCTTGCGGCAGTGTCCTT 60.282 61.111 1.67 0.00 0.00 3.36
49 50 4.335647 CCCTTGCGGCAGTGTCCT 62.336 66.667 1.67 0.00 0.00 3.85
58 59 0.606401 TCTTTCTCTTGCCCTTGCGG 60.606 55.000 0.00 0.00 41.78 5.69
59 60 0.801251 CTCTTTCTCTTGCCCTTGCG 59.199 55.000 0.00 0.00 41.78 4.85
60 61 1.172175 CCTCTTTCTCTTGCCCTTGC 58.828 55.000 0.00 0.00 38.26 4.01
61 62 1.172175 GCCTCTTTCTCTTGCCCTTG 58.828 55.000 0.00 0.00 0.00 3.61
62 63 0.322008 CGCCTCTTTCTCTTGCCCTT 60.322 55.000 0.00 0.00 0.00 3.95
63 64 1.298014 CGCCTCTTTCTCTTGCCCT 59.702 57.895 0.00 0.00 0.00 5.19
64 65 1.746991 CCGCCTCTTTCTCTTGCCC 60.747 63.158 0.00 0.00 0.00 5.36
65 66 1.746991 CCCGCCTCTTTCTCTTGCC 60.747 63.158 0.00 0.00 0.00 4.52
66 67 2.402572 GCCCGCCTCTTTCTCTTGC 61.403 63.158 0.00 0.00 0.00 4.01
67 68 1.003355 TGCCCGCCTCTTTCTCTTG 60.003 57.895 0.00 0.00 0.00 3.02
68 69 1.003233 GTGCCCGCCTCTTTCTCTT 60.003 57.895 0.00 0.00 0.00 2.85
69 70 1.557269 ATGTGCCCGCCTCTTTCTCT 61.557 55.000 0.00 0.00 0.00 3.10
70 71 0.678048 AATGTGCCCGCCTCTTTCTC 60.678 55.000 0.00 0.00 0.00 2.87
71 72 0.251341 AAATGTGCCCGCCTCTTTCT 60.251 50.000 0.00 0.00 0.00 2.52
72 73 0.603065 AAAATGTGCCCGCCTCTTTC 59.397 50.000 0.00 0.00 0.00 2.62
73 74 1.047801 AAAAATGTGCCCGCCTCTTT 58.952 45.000 0.00 0.00 0.00 2.52
74 75 1.544246 GTAAAAATGTGCCCGCCTCTT 59.456 47.619 0.00 0.00 0.00 2.85
75 76 1.173913 GTAAAAATGTGCCCGCCTCT 58.826 50.000 0.00 0.00 0.00 3.69
76 77 1.132453 GAGTAAAAATGTGCCCGCCTC 59.868 52.381 0.00 0.00 0.00 4.70
77 78 1.173913 GAGTAAAAATGTGCCCGCCT 58.826 50.000 0.00 0.00 0.00 5.52
78 79 0.179174 CGAGTAAAAATGTGCCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
79 80 0.796870 GCGAGTAAAAATGTGCCCGC 60.797 55.000 0.00 0.00 34.71 6.13
80 81 0.179174 GGCGAGTAAAAATGTGCCCG 60.179 55.000 0.00 0.00 36.51 6.13
81 82 0.179174 CGGCGAGTAAAAATGTGCCC 60.179 55.000 0.00 0.00 39.30 5.36
82 83 0.796870 GCGGCGAGTAAAAATGTGCC 60.797 55.000 12.98 0.00 39.10 5.01
83 84 1.125847 CGCGGCGAGTAAAAATGTGC 61.126 55.000 19.16 0.00 0.00 4.57
84 85 1.125847 GCGCGGCGAGTAAAAATGTG 61.126 55.000 28.54 0.00 0.00 3.21
85 86 1.133869 GCGCGGCGAGTAAAAATGT 59.866 52.632 28.54 0.00 0.00 2.71
86 87 3.962399 GCGCGGCGAGTAAAAATG 58.038 55.556 28.54 0.00 0.00 2.32
100 101 1.129326 AATATACTCAACGCTCGCGC 58.871 50.000 11.65 0.00 44.19 6.86
101 102 3.361053 CCTAAATATACTCAACGCTCGCG 59.639 47.826 10.06 10.06 46.03 5.87
102 103 3.121445 GCCTAAATATACTCAACGCTCGC 59.879 47.826 0.00 0.00 0.00 5.03
103 104 3.361053 CGCCTAAATATACTCAACGCTCG 59.639 47.826 0.00 0.00 0.00 5.03
104 105 4.382160 GTCGCCTAAATATACTCAACGCTC 59.618 45.833 0.00 0.00 0.00 5.03
105 106 4.202080 TGTCGCCTAAATATACTCAACGCT 60.202 41.667 0.00 0.00 0.00 5.07
106 107 4.046462 TGTCGCCTAAATATACTCAACGC 58.954 43.478 0.00 0.00 0.00 4.84
107 108 5.918576 TCATGTCGCCTAAATATACTCAACG 59.081 40.000 0.00 0.00 0.00 4.10
108 109 6.366332 CCTCATGTCGCCTAAATATACTCAAC 59.634 42.308 0.00 0.00 0.00 3.18
109 110 6.041637 ACCTCATGTCGCCTAAATATACTCAA 59.958 38.462 0.00 0.00 0.00 3.02
110 111 5.538813 ACCTCATGTCGCCTAAATATACTCA 59.461 40.000 0.00 0.00 0.00 3.41
111 112 6.026947 ACCTCATGTCGCCTAAATATACTC 57.973 41.667 0.00 0.00 0.00 2.59
112 113 6.420913 AACCTCATGTCGCCTAAATATACT 57.579 37.500 0.00 0.00 0.00 2.12
113 114 7.492352 AAAACCTCATGTCGCCTAAATATAC 57.508 36.000 0.00 0.00 0.00 1.47
150 151 0.586319 ACACAACATGGACGAAAGCG 59.414 50.000 0.00 0.00 44.79 4.68
151 152 2.774439 AACACAACATGGACGAAAGC 57.226 45.000 0.00 0.00 0.00 3.51
152 153 8.789881 TTAATTTAACACAACATGGACGAAAG 57.210 30.769 0.00 0.00 0.00 2.62
153 154 9.239002 CTTTAATTTAACACAACATGGACGAAA 57.761 29.630 0.00 0.00 0.00 3.46
154 155 7.863375 CCTTTAATTTAACACAACATGGACGAA 59.137 33.333 0.00 0.00 0.00 3.85
155 156 7.013464 ACCTTTAATTTAACACAACATGGACGA 59.987 33.333 0.00 0.00 0.00 4.20
156 157 7.142680 ACCTTTAATTTAACACAACATGGACG 58.857 34.615 0.00 0.00 0.00 4.79
157 158 8.880878 AACCTTTAATTTAACACAACATGGAC 57.119 30.769 0.00 0.00 0.00 4.02
185 186 9.967451 CTCCTAGGTATCTCTAATCATCACTAA 57.033 37.037 9.08 0.00 0.00 2.24
186 187 8.050325 GCTCCTAGGTATCTCTAATCATCACTA 58.950 40.741 9.08 0.00 0.00 2.74
187 188 6.889722 GCTCCTAGGTATCTCTAATCATCACT 59.110 42.308 9.08 0.00 0.00 3.41
188 189 6.096282 GGCTCCTAGGTATCTCTAATCATCAC 59.904 46.154 9.08 0.00 0.00 3.06
189 190 6.191315 GGCTCCTAGGTATCTCTAATCATCA 58.809 44.000 9.08 0.00 0.00 3.07
190 191 5.298276 CGGCTCCTAGGTATCTCTAATCATC 59.702 48.000 9.08 0.00 0.00 2.92
191 192 5.197451 CGGCTCCTAGGTATCTCTAATCAT 58.803 45.833 9.08 0.00 0.00 2.45
192 193 4.567958 CCGGCTCCTAGGTATCTCTAATCA 60.568 50.000 9.08 0.00 0.00 2.57
193 194 3.949113 CCGGCTCCTAGGTATCTCTAATC 59.051 52.174 9.08 0.00 0.00 1.75
194 195 3.309265 CCCGGCTCCTAGGTATCTCTAAT 60.309 52.174 9.08 0.00 0.00 1.73
195 196 2.041350 CCCGGCTCCTAGGTATCTCTAA 59.959 54.545 9.08 0.00 0.00 2.10
196 197 1.634459 CCCGGCTCCTAGGTATCTCTA 59.366 57.143 9.08 0.00 0.00 2.43
197 198 0.406361 CCCGGCTCCTAGGTATCTCT 59.594 60.000 9.08 0.00 0.00 3.10
198 199 0.404812 TCCCGGCTCCTAGGTATCTC 59.595 60.000 9.08 0.00 0.00 2.75
199 200 1.006162 GATCCCGGCTCCTAGGTATCT 59.994 57.143 9.08 0.00 0.00 1.98
200 201 1.476477 GATCCCGGCTCCTAGGTATC 58.524 60.000 9.08 0.00 0.00 2.24
201 202 0.323542 CGATCCCGGCTCCTAGGTAT 60.324 60.000 9.08 0.00 0.00 2.73
202 203 1.074423 CGATCCCGGCTCCTAGGTA 59.926 63.158 9.08 0.00 0.00 3.08
203 204 2.203509 CGATCCCGGCTCCTAGGT 60.204 66.667 9.08 0.00 0.00 3.08
213 214 1.014352 GTCCATTTTCACCGATCCCG 58.986 55.000 0.00 0.00 0.00 5.14
214 215 2.122783 TGTCCATTTTCACCGATCCC 57.877 50.000 0.00 0.00 0.00 3.85
215 216 4.513198 TTTTGTCCATTTTCACCGATCC 57.487 40.909 0.00 0.00 0.00 3.36
216 217 5.348451 CCAATTTTGTCCATTTTCACCGATC 59.652 40.000 0.00 0.00 0.00 3.69
217 218 5.221621 ACCAATTTTGTCCATTTTCACCGAT 60.222 36.000 0.00 0.00 0.00 4.18
218 219 4.100189 ACCAATTTTGTCCATTTTCACCGA 59.900 37.500 0.00 0.00 0.00 4.69
219 220 4.376146 ACCAATTTTGTCCATTTTCACCG 58.624 39.130 0.00 0.00 0.00 4.94
220 221 4.754618 GGACCAATTTTGTCCATTTTCACC 59.245 41.667 15.86 0.00 37.24 4.02
221 222 5.610398 AGGACCAATTTTGTCCATTTTCAC 58.390 37.500 20.67 0.00 39.60 3.18
222 223 5.885449 AGGACCAATTTTGTCCATTTTCA 57.115 34.783 20.67 0.00 39.60 2.69
223 224 8.314021 AGATAAGGACCAATTTTGTCCATTTTC 58.686 33.333 20.67 15.71 39.60 2.29
224 225 8.096414 CAGATAAGGACCAATTTTGTCCATTTT 58.904 33.333 20.67 11.86 39.60 1.82
225 226 7.454380 TCAGATAAGGACCAATTTTGTCCATTT 59.546 33.333 20.67 12.38 39.60 2.32
226 227 6.953520 TCAGATAAGGACCAATTTTGTCCATT 59.046 34.615 20.67 15.07 39.60 3.16
227 228 6.493166 TCAGATAAGGACCAATTTTGTCCAT 58.507 36.000 20.67 13.96 39.60 3.41
228 229 5.886609 TCAGATAAGGACCAATTTTGTCCA 58.113 37.500 20.67 6.56 39.60 4.02
229 230 6.834168 TTCAGATAAGGACCAATTTTGTCC 57.166 37.500 13.75 13.75 37.53 4.02
230 231 7.886338 AGTTTCAGATAAGGACCAATTTTGTC 58.114 34.615 0.00 0.00 0.00 3.18
231 232 7.839680 AGTTTCAGATAAGGACCAATTTTGT 57.160 32.000 0.00 0.00 0.00 2.83
235 236 9.362151 TGTTAAAGTTTCAGATAAGGACCAATT 57.638 29.630 0.00 0.00 0.00 2.32
236 237 8.793592 GTGTTAAAGTTTCAGATAAGGACCAAT 58.206 33.333 0.00 0.00 0.00 3.16
237 238 7.776030 TGTGTTAAAGTTTCAGATAAGGACCAA 59.224 33.333 0.00 0.00 0.00 3.67
238 239 7.284074 TGTGTTAAAGTTTCAGATAAGGACCA 58.716 34.615 0.00 0.00 0.00 4.02
239 240 7.739498 TGTGTTAAAGTTTCAGATAAGGACC 57.261 36.000 0.00 0.00 0.00 4.46
244 245 9.255304 GCCATTTTGTGTTAAAGTTTCAGATAA 57.745 29.630 0.00 0.00 0.00 1.75
245 246 7.870445 GGCCATTTTGTGTTAAAGTTTCAGATA 59.130 33.333 0.00 0.00 0.00 1.98
246 247 6.705825 GGCCATTTTGTGTTAAAGTTTCAGAT 59.294 34.615 0.00 0.00 0.00 2.90
247 248 6.045955 GGCCATTTTGTGTTAAAGTTTCAGA 58.954 36.000 0.00 0.00 0.00 3.27
248 249 5.236263 GGGCCATTTTGTGTTAAAGTTTCAG 59.764 40.000 4.39 0.00 0.00 3.02
249 250 5.119694 GGGCCATTTTGTGTTAAAGTTTCA 58.880 37.500 4.39 0.00 0.00 2.69
250 251 4.513692 GGGGCCATTTTGTGTTAAAGTTTC 59.486 41.667 4.39 0.00 0.00 2.78
251 252 4.080299 TGGGGCCATTTTGTGTTAAAGTTT 60.080 37.500 4.39 0.00 0.00 2.66
252 253 3.456277 TGGGGCCATTTTGTGTTAAAGTT 59.544 39.130 4.39 0.00 0.00 2.66
253 254 3.041946 TGGGGCCATTTTGTGTTAAAGT 58.958 40.909 4.39 0.00 0.00 2.66
254 255 3.760580 TGGGGCCATTTTGTGTTAAAG 57.239 42.857 4.39 0.00 0.00 1.85
255 256 4.349342 AGATTGGGGCCATTTTGTGTTAAA 59.651 37.500 4.39 0.00 0.00 1.52
256 257 3.906846 AGATTGGGGCCATTTTGTGTTAA 59.093 39.130 4.39 0.00 0.00 2.01
257 258 3.515562 AGATTGGGGCCATTTTGTGTTA 58.484 40.909 4.39 0.00 0.00 2.41
258 259 2.337849 AGATTGGGGCCATTTTGTGTT 58.662 42.857 4.39 0.00 0.00 3.32
259 260 2.028561 AGATTGGGGCCATTTTGTGT 57.971 45.000 4.39 0.00 0.00 3.72
260 261 4.550076 TTTAGATTGGGGCCATTTTGTG 57.450 40.909 4.39 0.00 0.00 3.33
261 262 5.777526 ATTTTAGATTGGGGCCATTTTGT 57.222 34.783 4.39 0.00 0.00 2.83
262 263 8.750515 AAATATTTTAGATTGGGGCCATTTTG 57.249 30.769 4.39 0.00 0.00 2.44
263 264 8.555729 TGAAATATTTTAGATTGGGGCCATTTT 58.444 29.630 4.39 0.00 0.00 1.82
264 265 8.100135 TGAAATATTTTAGATTGGGGCCATTT 57.900 30.769 4.39 0.00 0.00 2.32
265 266 7.688918 TGAAATATTTTAGATTGGGGCCATT 57.311 32.000 4.39 0.00 0.00 3.16
266 267 7.513436 TCATGAAATATTTTAGATTGGGGCCAT 59.487 33.333 4.39 0.00 0.00 4.40
267 268 6.843333 TCATGAAATATTTTAGATTGGGGCCA 59.157 34.615 4.39 0.00 0.00 5.36
268 269 7.301868 TCATGAAATATTTTAGATTGGGGCC 57.698 36.000 1.43 0.00 0.00 5.80
269 270 9.783081 ATTTCATGAAATATTTTAGATTGGGGC 57.217 29.630 28.17 0.00 39.08 5.80
276 277 9.713684 AGGGACCATTTCATGAAATATTTTAGA 57.286 29.630 28.61 3.37 38.84 2.10
280 281 9.452287 CAAAAGGGACCATTTCATGAAATATTT 57.548 29.630 28.61 17.53 38.84 1.40
281 282 7.553760 GCAAAAGGGACCATTTCATGAAATATT 59.446 33.333 28.61 19.69 38.84 1.28
282 283 7.049754 GCAAAAGGGACCATTTCATGAAATAT 58.950 34.615 28.61 20.94 38.84 1.28
283 284 6.013898 TGCAAAAGGGACCATTTCATGAAATA 60.014 34.615 28.61 7.80 38.84 1.40
284 285 5.221884 TGCAAAAGGGACCATTTCATGAAAT 60.222 36.000 24.83 24.83 41.33 2.17
285 286 4.102210 TGCAAAAGGGACCATTTCATGAAA 59.898 37.500 22.52 22.52 34.46 2.69
286 287 3.645212 TGCAAAAGGGACCATTTCATGAA 59.355 39.130 3.38 3.38 0.00 2.57
287 288 3.237746 TGCAAAAGGGACCATTTCATGA 58.762 40.909 4.29 0.00 0.00 3.07
288 289 3.681593 TGCAAAAGGGACCATTTCATG 57.318 42.857 4.29 1.82 0.00 3.07
289 290 3.839490 TCATGCAAAAGGGACCATTTCAT 59.161 39.130 4.29 2.46 0.00 2.57
290 291 3.237746 TCATGCAAAAGGGACCATTTCA 58.762 40.909 4.29 0.00 0.00 2.69
291 292 3.959535 TCATGCAAAAGGGACCATTTC 57.040 42.857 4.29 0.00 0.00 2.17
292 293 3.620472 GCATCATGCAAAAGGGACCATTT 60.620 43.478 4.20 0.00 44.26 2.32
293 294 2.093341 GCATCATGCAAAAGGGACCATT 60.093 45.455 4.20 0.00 44.26 3.16
294 295 1.483415 GCATCATGCAAAAGGGACCAT 59.517 47.619 4.20 0.00 44.26 3.55
295 296 0.896923 GCATCATGCAAAAGGGACCA 59.103 50.000 4.20 0.00 44.26 4.02
296 297 3.746900 GCATCATGCAAAAGGGACC 57.253 52.632 4.20 0.00 44.26 4.46
320 321 2.177594 ATCTAGCATGGCGCCCTAGC 62.178 60.000 26.77 24.28 44.04 3.42
321 322 1.135915 CTATCTAGCATGGCGCCCTAG 59.864 57.143 26.77 25.32 44.04 3.02
322 323 1.186200 CTATCTAGCATGGCGCCCTA 58.814 55.000 26.77 17.07 44.04 3.53
323 324 1.978473 CTATCTAGCATGGCGCCCT 59.022 57.895 26.77 16.82 44.04 5.19
324 325 4.606071 CTATCTAGCATGGCGCCC 57.394 61.111 26.77 8.84 44.04 6.13
334 335 0.109086 CGGGGCGTCATGCTATCTAG 60.109 60.000 0.00 0.00 45.43 2.43
335 336 1.532604 CCGGGGCGTCATGCTATCTA 61.533 60.000 0.00 0.00 45.43 1.98
336 337 2.737180 CGGGGCGTCATGCTATCT 59.263 61.111 0.00 0.00 45.43 1.98
337 338 2.357517 CCGGGGCGTCATGCTATC 60.358 66.667 0.00 0.00 45.43 2.08
338 339 3.941188 CCCGGGGCGTCATGCTAT 61.941 66.667 14.71 0.00 45.43 2.97
341 342 4.476752 TAACCCGGGGCGTCATGC 62.477 66.667 27.92 0.00 45.38 4.06
342 343 2.203015 CTAACCCGGGGCGTCATG 60.203 66.667 27.92 3.37 0.00 3.07
343 344 3.476419 CCTAACCCGGGGCGTCAT 61.476 66.667 27.92 0.00 0.00 3.06
351 352 2.203015 CATGACGCCCTAACCCGG 60.203 66.667 0.00 0.00 0.00 5.73
352 353 2.023414 TAGCATGACGCCCTAACCCG 62.023 60.000 0.00 0.00 44.04 5.28
353 354 0.396811 ATAGCATGACGCCCTAACCC 59.603 55.000 0.00 0.00 44.04 4.11
354 355 2.256117 AATAGCATGACGCCCTAACC 57.744 50.000 0.00 0.00 44.04 2.85
355 356 2.290641 CCAAATAGCATGACGCCCTAAC 59.709 50.000 0.00 0.00 44.04 2.34
356 357 2.571212 CCAAATAGCATGACGCCCTAA 58.429 47.619 0.00 0.00 44.04 2.69
357 358 1.813862 GCCAAATAGCATGACGCCCTA 60.814 52.381 0.00 0.00 44.04 3.53
358 359 1.103398 GCCAAATAGCATGACGCCCT 61.103 55.000 0.00 0.00 44.04 5.19
359 360 1.360192 GCCAAATAGCATGACGCCC 59.640 57.895 0.00 0.00 44.04 6.13
360 361 2.105984 TGCCAAATAGCATGACGCC 58.894 52.632 0.00 0.00 44.04 5.68
392 393 4.935495 ATGTAGCATGGCGCCCCG 62.935 66.667 26.77 16.48 44.04 5.73
393 394 3.289834 CATGTAGCATGGCGCCCC 61.290 66.667 26.77 12.64 44.04 5.80
394 395 2.516930 ACATGTAGCATGGCGCCC 60.517 61.111 26.77 8.84 44.04 6.13
395 396 2.885676 CGACATGTAGCATGGCGCC 61.886 63.158 22.73 22.73 43.99 6.53
396 397 2.628106 CGACATGTAGCATGGCGC 59.372 61.111 21.77 0.00 43.99 6.53
398 399 1.728971 GATAGCGACATGTAGCATGGC 59.271 52.381 29.04 13.70 33.49 4.40
399 400 3.030668 TGATAGCGACATGTAGCATGG 57.969 47.619 29.04 3.37 33.49 3.66
400 401 3.370061 CCATGATAGCGACATGTAGCATG 59.630 47.826 29.04 21.49 40.94 4.06
401 402 3.593096 CCATGATAGCGACATGTAGCAT 58.407 45.455 29.04 20.31 42.16 3.79
402 403 2.867647 GCCATGATAGCGACATGTAGCA 60.868 50.000 29.04 17.00 42.16 3.49
403 404 1.728971 GCCATGATAGCGACATGTAGC 59.271 52.381 21.79 21.79 42.16 3.58
413 414 1.743252 GCTAGGGCGCCATGATAGC 60.743 63.158 30.85 27.84 32.83 2.97
414 415 4.606071 GCTAGGGCGCCATGATAG 57.394 61.111 30.85 22.92 0.00 2.08
432 433 4.899239 GAGAGCATGACGCCCCGG 62.899 72.222 0.00 0.00 44.04 5.73
433 434 2.413437 CTAGAGAGCATGACGCCCCG 62.413 65.000 0.00 0.00 44.04 5.73
434 435 1.365633 CTAGAGAGCATGACGCCCC 59.634 63.158 0.00 0.00 44.04 5.80
445 446 0.879400 CAAGGCGCCATGCTAGAGAG 60.879 60.000 31.54 0.00 45.43 3.20
446 447 1.144716 CAAGGCGCCATGCTAGAGA 59.855 57.895 31.54 0.00 45.43 3.10
447 448 1.890979 CCAAGGCGCCATGCTAGAG 60.891 63.158 31.54 9.99 45.43 2.43
448 449 2.190313 CCAAGGCGCCATGCTAGA 59.810 61.111 31.54 0.00 45.43 2.43
449 450 3.589881 GCCAAGGCGCCATGCTAG 61.590 66.667 31.54 15.52 45.43 3.42
466 467 2.745906 TTTTTGCATGACGCCCGCAG 62.746 55.000 0.00 0.00 41.33 5.18
467 468 2.849964 TTTTTGCATGACGCCCGCA 61.850 52.632 0.00 0.00 41.33 5.69
468 469 2.049618 TTTTTGCATGACGCCCGC 60.050 55.556 0.00 0.00 41.33 6.13
495 496 9.893634 TGATCCCAGTCTAAAAATATTTTACGA 57.106 29.630 13.68 10.15 0.00 3.43
506 507 9.527157 TCAACATAAAATGATCCCAGTCTAAAA 57.473 29.630 0.00 0.00 0.00 1.52
507 508 9.527157 TTCAACATAAAATGATCCCAGTCTAAA 57.473 29.630 0.00 0.00 0.00 1.85
508 509 9.177608 CTTCAACATAAAATGATCCCAGTCTAA 57.822 33.333 0.00 0.00 0.00 2.10
509 510 8.328758 ACTTCAACATAAAATGATCCCAGTCTA 58.671 33.333 0.00 0.00 0.00 2.59
510 511 7.177878 ACTTCAACATAAAATGATCCCAGTCT 58.822 34.615 0.00 0.00 0.00 3.24
511 512 7.396540 ACTTCAACATAAAATGATCCCAGTC 57.603 36.000 0.00 0.00 0.00 3.51
512 513 7.781324 AACTTCAACATAAAATGATCCCAGT 57.219 32.000 0.00 0.00 0.00 4.00
523 524 9.528489 AGCCCTTATCTAAAACTTCAACATAAA 57.472 29.630 0.00 0.00 0.00 1.40
525 526 9.832445 CTAGCCCTTATCTAAAACTTCAACATA 57.168 33.333 0.00 0.00 0.00 2.29
526 527 8.329502 ACTAGCCCTTATCTAAAACTTCAACAT 58.670 33.333 0.00 0.00 0.00 2.71
527 528 7.686434 ACTAGCCCTTATCTAAAACTTCAACA 58.314 34.615 0.00 0.00 0.00 3.33
528 529 8.563123 AACTAGCCCTTATCTAAAACTTCAAC 57.437 34.615 0.00 0.00 0.00 3.18
529 530 9.010029 CAAACTAGCCCTTATCTAAAACTTCAA 57.990 33.333 0.00 0.00 0.00 2.69
530 531 8.161425 ACAAACTAGCCCTTATCTAAAACTTCA 58.839 33.333 0.00 0.00 0.00 3.02
531 532 8.563123 ACAAACTAGCCCTTATCTAAAACTTC 57.437 34.615 0.00 0.00 0.00 3.01
532 533 8.935614 AACAAACTAGCCCTTATCTAAAACTT 57.064 30.769 0.00 0.00 0.00 2.66
533 534 8.161425 TGAACAAACTAGCCCTTATCTAAAACT 58.839 33.333 0.00 0.00 0.00 2.66
534 535 8.331730 TGAACAAACTAGCCCTTATCTAAAAC 57.668 34.615 0.00 0.00 0.00 2.43
535 536 9.528489 AATGAACAAACTAGCCCTTATCTAAAA 57.472 29.630 0.00 0.00 0.00 1.52
536 537 9.528489 AAATGAACAAACTAGCCCTTATCTAAA 57.472 29.630 0.00 0.00 0.00 1.85
537 538 9.528489 AAAATGAACAAACTAGCCCTTATCTAA 57.472 29.630 0.00 0.00 0.00 2.10
538 539 9.174166 GAAAATGAACAAACTAGCCCTTATCTA 57.826 33.333 0.00 0.00 0.00 1.98
539 540 7.669722 TGAAAATGAACAAACTAGCCCTTATCT 59.330 33.333 0.00 0.00 0.00 1.98
540 541 7.755373 GTGAAAATGAACAAACTAGCCCTTATC 59.245 37.037 0.00 0.00 0.00 1.75
541 542 7.309805 GGTGAAAATGAACAAACTAGCCCTTAT 60.310 37.037 0.00 0.00 0.00 1.73
542 543 6.015772 GGTGAAAATGAACAAACTAGCCCTTA 60.016 38.462 0.00 0.00 0.00 2.69
543 544 5.221441 GGTGAAAATGAACAAACTAGCCCTT 60.221 40.000 0.00 0.00 0.00 3.95
544 545 4.280929 GGTGAAAATGAACAAACTAGCCCT 59.719 41.667 0.00 0.00 0.00 5.19
545 546 4.280929 AGGTGAAAATGAACAAACTAGCCC 59.719 41.667 0.00 0.00 0.00 5.19
546 547 5.222631 CAGGTGAAAATGAACAAACTAGCC 58.777 41.667 0.00 0.00 0.00 3.93
547 548 5.222631 CCAGGTGAAAATGAACAAACTAGC 58.777 41.667 0.00 0.00 0.00 3.42
548 549 5.534654 TCCCAGGTGAAAATGAACAAACTAG 59.465 40.000 0.00 0.00 0.00 2.57
549 550 5.450453 TCCCAGGTGAAAATGAACAAACTA 58.550 37.500 0.00 0.00 0.00 2.24
550 551 4.285863 TCCCAGGTGAAAATGAACAAACT 58.714 39.130 0.00 0.00 0.00 2.66
551 552 4.664150 TCCCAGGTGAAAATGAACAAAC 57.336 40.909 0.00 0.00 0.00 2.93
552 553 4.022416 CGATCCCAGGTGAAAATGAACAAA 60.022 41.667 0.00 0.00 0.00 2.83
553 554 3.505680 CGATCCCAGGTGAAAATGAACAA 59.494 43.478 0.00 0.00 0.00 2.83
554 555 3.081061 CGATCCCAGGTGAAAATGAACA 58.919 45.455 0.00 0.00 0.00 3.18
555 556 2.423538 CCGATCCCAGGTGAAAATGAAC 59.576 50.000 0.00 0.00 0.00 3.18
556 557 2.307392 TCCGATCCCAGGTGAAAATGAA 59.693 45.455 0.00 0.00 0.00 2.57
557 558 1.912731 TCCGATCCCAGGTGAAAATGA 59.087 47.619 0.00 0.00 0.00 2.57
558 559 2.017049 GTCCGATCCCAGGTGAAAATG 58.983 52.381 0.00 0.00 0.00 2.32
559 560 1.064685 GGTCCGATCCCAGGTGAAAAT 60.065 52.381 0.00 0.00 0.00 1.82
560 561 0.326927 GGTCCGATCCCAGGTGAAAA 59.673 55.000 0.00 0.00 0.00 2.29
561 562 1.559065 GGGTCCGATCCCAGGTGAAA 61.559 60.000 9.48 0.00 46.30 2.69
562 563 1.993391 GGGTCCGATCCCAGGTGAA 60.993 63.158 9.48 0.00 46.30 3.18
563 564 2.365105 GGGTCCGATCCCAGGTGA 60.365 66.667 9.48 0.00 46.30 4.02
647 652 2.325857 GGCGCGACAGCATGATTC 59.674 61.111 12.10 0.00 45.49 2.52
748 757 0.388907 TAAGCCTGTGCCGTAACGTC 60.389 55.000 0.00 0.00 38.69 4.34
820 841 3.461773 CGTCACGAGCCCATCCCT 61.462 66.667 0.00 0.00 0.00 4.20
821 842 4.530857 CCGTCACGAGCCCATCCC 62.531 72.222 0.00 0.00 0.00 3.85
822 843 3.458163 TCCGTCACGAGCCCATCC 61.458 66.667 0.00 0.00 0.00 3.51
823 844 2.202756 GTCCGTCACGAGCCCATC 60.203 66.667 0.00 0.00 0.00 3.51
824 845 2.994995 TGTCCGTCACGAGCCCAT 60.995 61.111 0.00 0.00 0.00 4.00
866 887 1.525995 CCACACTTGTCCTTGCCGT 60.526 57.895 0.00 0.00 0.00 5.68
868 889 2.564721 GGCCACACTTGTCCTTGCC 61.565 63.158 0.00 0.00 0.00 4.52
869 890 2.908073 CGGCCACACTTGTCCTTGC 61.908 63.158 2.24 0.00 0.00 4.01
870 891 1.227823 TCGGCCACACTTGTCCTTG 60.228 57.895 2.24 0.00 0.00 3.61
871 892 1.227853 GTCGGCCACACTTGTCCTT 60.228 57.895 2.24 0.00 0.00 3.36
872 893 2.426023 GTCGGCCACACTTGTCCT 59.574 61.111 2.24 0.00 0.00 3.85
873 894 2.668550 GGTCGGCCACACTTGTCC 60.669 66.667 0.00 0.00 34.09 4.02
874 895 3.041940 CGGTCGGCCACACTTGTC 61.042 66.667 6.96 0.00 34.09 3.18
875 896 4.619227 CCGGTCGGCCACACTTGT 62.619 66.667 6.96 0.00 34.09 3.16
967 1537 2.081212 GTCGTCGTCGCAGTCCTTG 61.081 63.158 0.00 0.00 36.96 3.61
1011 1581 3.934962 GCGATGCCTCTCCCCTCC 61.935 72.222 0.00 0.00 0.00 4.30
1012 1582 4.292178 CGCGATGCCTCTCCCCTC 62.292 72.222 0.00 0.00 0.00 4.30
1029 1599 0.725117 CGTTGTTATTGCGGAGGGAC 59.275 55.000 0.00 0.00 0.00 4.46
1030 1600 0.609151 TCGTTGTTATTGCGGAGGGA 59.391 50.000 0.00 0.00 0.00 4.20
1031 1601 0.725117 GTCGTTGTTATTGCGGAGGG 59.275 55.000 0.00 0.00 0.00 4.30
1032 1602 0.368907 CGTCGTTGTTATTGCGGAGG 59.631 55.000 0.00 0.00 0.00 4.30
1033 1603 1.058695 GTCGTCGTTGTTATTGCGGAG 59.941 52.381 0.00 0.00 0.00 4.63
1172 1751 2.835705 CGACGAGGGGTCAGATCCG 61.836 68.421 0.00 0.00 46.42 4.18
1227 1806 4.749310 AGGAACTGCTGCGGCTCG 62.749 66.667 20.27 12.29 37.18 5.03
1229 1808 4.749310 CGAGGAACTGCTGCGGCT 62.749 66.667 20.27 0.00 41.55 5.52
1380 1967 3.238241 GCGTGGTCATCGTCGTCG 61.238 66.667 0.00 0.00 38.55 5.12
1452 2045 4.314440 GTCCACAGGTCCAGCGCA 62.314 66.667 11.47 0.00 0.00 6.09
1458 2051 3.916392 CTGCGACGTCCACAGGTCC 62.916 68.421 20.33 0.00 34.45 4.46
2214 2825 7.375053 GGCTAAACTTGATACTCCAGATAGAG 58.625 42.308 0.00 0.00 39.91 2.43
2442 3053 3.055094 AGCTACTGGATTTCCGACATTGT 60.055 43.478 0.00 0.00 39.43 2.71
2582 3193 7.712639 TCAGGATATTAGAATGAGAAGCAACAC 59.287 37.037 0.00 0.00 0.00 3.32
2670 3281 9.994432 AATTAATCGACAGAGCTTTCTAAATTG 57.006 29.630 0.00 0.00 0.00 2.32
2681 3292 5.833082 TGAGGACTAATTAATCGACAGAGC 58.167 41.667 0.00 0.00 0.00 4.09
2727 3338 6.372937 ACTTATCAAGTTCTGCCTTTAAGAGC 59.627 38.462 0.00 0.00 39.04 4.09
2992 3606 5.290493 TCCTTTCTTTAAGACAGACAGCA 57.710 39.130 9.46 0.00 35.80 4.41
2996 3610 7.497925 ACACATTCCTTTCTTTAAGACAGAC 57.502 36.000 9.46 0.00 35.80 3.51
3106 3720 4.844349 ATGCTTATGTTACAGTCTGGGT 57.156 40.909 4.53 0.00 0.00 4.51
3207 3821 8.974060 ACACTCTTGGAATTAAAGTACTTCAA 57.026 30.769 8.95 0.00 0.00 2.69
3290 3904 6.688922 GCAAATGAGTCTTCCCACCTATCATA 60.689 42.308 0.00 0.00 0.00 2.15
3391 4005 4.021102 ACAATCTTTCCGAACATCCAGT 57.979 40.909 0.00 0.00 0.00 4.00
3448 4062 4.214545 TCCAACACTGTAAATTTAGGCACG 59.785 41.667 0.00 0.00 0.00 5.34
3464 4078 6.988522 ACTTAACCCAACATATTTCCAACAC 58.011 36.000 0.00 0.00 0.00 3.32
3537 4152 3.118038 AGCACATTATTACCGTGGATGGT 60.118 43.478 0.00 0.00 46.26 3.55
3586 4201 5.913137 AAAATCGGCAATAATGGAGTCAA 57.087 34.783 0.00 0.00 0.00 3.18
3587 4202 5.298276 GGTAAAATCGGCAATAATGGAGTCA 59.702 40.000 0.00 0.00 0.00 3.41
3592 4207 3.895041 AGGGGTAAAATCGGCAATAATGG 59.105 43.478 0.00 0.00 0.00 3.16
3616 4231 4.965200 ACCTAGAATAAGCTTGGCCTAG 57.035 45.455 9.86 10.15 34.67 3.02
3813 4434 2.103373 TGCTAGAGATTTCCTGACGCT 58.897 47.619 0.00 0.00 0.00 5.07
3814 4435 2.586258 TGCTAGAGATTTCCTGACGC 57.414 50.000 0.00 0.00 0.00 5.19
3842 4463 9.547753 AACTCCATGAGTAATAACATGTATGTC 57.452 33.333 0.00 0.00 42.59 3.06
3884 4505 9.950496 AGACAGTAAGACAAATCATAACTGAAT 57.050 29.630 6.57 0.00 35.90 2.57
4021 4645 1.471501 CGCTTATAGCTGCCTGTGACA 60.472 52.381 0.00 0.00 39.60 3.58
4025 4649 1.207089 TGTTCGCTTATAGCTGCCTGT 59.793 47.619 0.00 0.00 39.60 4.00
4041 4665 5.941948 AGCACAGTAAGGTGTAATTGTTC 57.058 39.130 0.00 0.00 40.89 3.18
4050 4674 3.868757 TGTAGCTAGCACAGTAAGGTG 57.131 47.619 18.83 0.00 41.72 4.00
4100 4724 1.078497 TTCGGACGCATTGCTGGAT 60.078 52.632 7.12 0.00 0.00 3.41
4176 4800 7.948357 AGGTAAGAAATTTTGTAAAGACACCC 58.052 34.615 0.00 0.00 34.48 4.61
4199 4823 4.836125 ACTGCACACATGAAGTTTAAGG 57.164 40.909 0.00 0.00 42.77 2.69
4252 4882 6.560253 ACACTTGACATGTTCCATAACTTC 57.440 37.500 0.00 0.00 36.51 3.01
4329 4959 4.256110 TCCATGTGTGAGCTAAACTGATG 58.744 43.478 0.00 0.00 0.00 3.07
4390 5020 4.340666 TGTCACTGGAAAGCAAAGCAATAA 59.659 37.500 0.00 0.00 0.00 1.40
4586 5216 7.987649 AGAACTTAACAAACGGAACACATTTA 58.012 30.769 0.00 0.00 0.00 1.40
4701 5331 3.070018 GTCATAAATCATCAGAGCGGGG 58.930 50.000 0.00 0.00 0.00 5.73
4740 5373 7.173390 AGGAAAAGTAAGAGCTACACATTCAAC 59.827 37.037 0.00 0.00 32.37 3.18
4898 5531 4.387256 CAGAACAGAACAGATTCGGAAGTC 59.613 45.833 0.00 0.00 40.04 3.01
4908 5541 2.103094 CCTGGTGTCAGAACAGAACAGA 59.897 50.000 0.00 0.00 43.49 3.41
4909 5542 2.487934 CCTGGTGTCAGAACAGAACAG 58.512 52.381 0.00 0.00 43.49 3.16
4910 5543 1.475034 GCCTGGTGTCAGAACAGAACA 60.475 52.381 0.00 0.00 43.49 3.18
4911 5544 1.230324 GCCTGGTGTCAGAACAGAAC 58.770 55.000 0.00 0.00 43.49 3.01
4912 5545 0.108585 GGCCTGGTGTCAGAACAGAA 59.891 55.000 0.00 0.00 43.49 3.02
4949 5582 9.522804 CAAGTAACTATGATTCAGTAAGAGACC 57.477 37.037 0.00 0.00 0.00 3.85
5094 5727 8.306761 CAATATGGTATGACACAGTAGCTATGA 58.693 37.037 0.00 0.00 0.00 2.15
5143 5778 5.614887 GCAACAGTGTCTCGAAAAGATTACC 60.615 44.000 0.00 0.00 36.11 2.85
5180 5829 6.243216 ACAGGTCAAGGACTAAAACTACAA 57.757 37.500 0.00 0.00 32.47 2.41
5181 5830 5.881923 ACAGGTCAAGGACTAAAACTACA 57.118 39.130 0.00 0.00 32.47 2.74
5182 5831 8.554528 GTTAAACAGGTCAAGGACTAAAACTAC 58.445 37.037 0.00 0.00 32.47 2.73
5183 5832 7.716560 GGTTAAACAGGTCAAGGACTAAAACTA 59.283 37.037 0.00 0.00 32.47 2.24
5184 5833 6.544931 GGTTAAACAGGTCAAGGACTAAAACT 59.455 38.462 0.00 0.00 32.47 2.66
5185 5834 6.544931 AGGTTAAACAGGTCAAGGACTAAAAC 59.455 38.462 0.00 0.00 32.47 2.43
5186 5835 6.665695 AGGTTAAACAGGTCAAGGACTAAAA 58.334 36.000 0.00 0.00 32.47 1.52
5187 5836 6.256643 AGGTTAAACAGGTCAAGGACTAAA 57.743 37.500 0.00 0.00 32.47 1.85
5188 5837 5.899631 AGGTTAAACAGGTCAAGGACTAA 57.100 39.130 0.00 0.00 32.47 2.24
5189 5838 7.563724 AATAGGTTAAACAGGTCAAGGACTA 57.436 36.000 0.00 0.00 32.47 2.59
5190 5839 6.449830 AATAGGTTAAACAGGTCAAGGACT 57.550 37.500 0.00 0.00 32.47 3.85
5191 5840 6.569801 GCAAATAGGTTAAACAGGTCAAGGAC 60.570 42.308 0.00 0.00 0.00 3.85
5192 5841 5.475564 GCAAATAGGTTAAACAGGTCAAGGA 59.524 40.000 0.00 0.00 0.00 3.36
5193 5842 5.336451 GGCAAATAGGTTAAACAGGTCAAGG 60.336 44.000 0.00 0.00 0.00 3.61
5374 6023 1.663135 GTTTTGGCGCTTTGCTGAAAA 59.337 42.857 7.64 0.00 45.43 2.29
5410 6059 6.341316 ACATTACGAGCTATCAACTCAACAT 58.659 36.000 0.00 0.00 33.58 2.71
5543 6198 3.820467 CTGAGATTTGGCTGTTGGTGTTA 59.180 43.478 0.00 0.00 0.00 2.41
5579 6234 2.620585 TGAGATCACGTATCTGCCTCTG 59.379 50.000 10.86 0.00 45.35 3.35
5651 6306 1.154263 GCTGCTGCTTCTTTGCTCG 60.154 57.895 8.53 0.00 36.03 5.03
5652 6307 0.109689 CTGCTGCTGCTTCTTTGCTC 60.110 55.000 17.00 0.00 40.48 4.26
5654 6309 1.733399 GCTGCTGCTGCTTCTTTGC 60.733 57.895 22.10 7.59 40.48 3.68
5655 6310 0.387367 CTGCTGCTGCTGCTTCTTTG 60.387 55.000 27.67 10.52 40.48 2.77
5656 6311 1.957562 CTGCTGCTGCTGCTTCTTT 59.042 52.632 27.67 0.00 40.48 2.52
5657 6312 3.669686 CTGCTGCTGCTGCTTCTT 58.330 55.556 27.67 0.00 40.48 2.52
5666 6321 3.749064 CCCTTGCTGCTGCTGCTG 61.749 66.667 27.67 20.35 40.48 4.41
5690 6345 3.250744 CTCGTAGGAATTTGCGACAGAA 58.749 45.455 2.47 0.00 0.00 3.02
5702 6357 3.944015 GGCAGTAGAAGTACTCGTAGGAA 59.056 47.826 0.00 0.00 37.40 3.36
5889 6547 1.659098 CGAACCGTTGCTTAGGTCATC 59.341 52.381 0.00 0.00 40.37 2.92
6071 6729 1.580658 AGTATCCTGATCTGACCCCCA 59.419 52.381 0.38 0.00 0.00 4.96
6133 6791 2.470057 ACACACAAAAATCACCCCCT 57.530 45.000 0.00 0.00 0.00 4.79
6134 6792 4.674281 TTTACACACAAAAATCACCCCC 57.326 40.909 0.00 0.00 0.00 5.40
6136 6794 6.866248 CACCTATTTACACACAAAAATCACCC 59.134 38.462 0.00 0.00 0.00 4.61
6191 6865 0.093026 CATTCGCACGGAACTCGAAC 59.907 55.000 0.00 0.00 43.61 3.95
6216 6890 1.079197 CACGCATCAGCTACACCCA 60.079 57.895 0.00 0.00 39.10 4.51
6221 6895 1.855360 GAGTAAGCACGCATCAGCTAC 59.145 52.381 0.00 0.00 40.90 3.58
6223 6897 0.803768 CGAGTAAGCACGCATCAGCT 60.804 55.000 0.00 0.00 44.31 4.24
6276 6950 2.775890 GGGCTCCACTATCATCATGTG 58.224 52.381 0.00 0.00 0.00 3.21
6277 6951 1.345741 CGGGCTCCACTATCATCATGT 59.654 52.381 0.00 0.00 0.00 3.21
6279 6953 1.898472 CTCGGGCTCCACTATCATCAT 59.102 52.381 0.00 0.00 0.00 2.45
6280 6954 1.133482 TCTCGGGCTCCACTATCATCA 60.133 52.381 0.00 0.00 0.00 3.07
6281 6955 1.621992 TCTCGGGCTCCACTATCATC 58.378 55.000 0.00 0.00 0.00 2.92
6286 6960 1.898154 GCTTTCTCGGGCTCCACTA 59.102 57.895 0.00 0.00 0.00 2.74
6338 7012 3.195396 TGGAAAAGCAGATACAAATGGGC 59.805 43.478 0.00 0.00 0.00 5.36
6353 7033 1.801178 GAGCGGACAAGAGTGGAAAAG 59.199 52.381 0.00 0.00 0.00 2.27
6422 7102 8.934023 AGAATATGTCAGAAAGGGTAACAAAA 57.066 30.769 0.00 0.00 39.74 2.44
6424 7104 7.942341 ACAAGAATATGTCAGAAAGGGTAACAA 59.058 33.333 0.00 0.00 39.74 2.83
6434 7123 9.581289 TTTTTCCCTTACAAGAATATGTCAGAA 57.419 29.630 0.00 0.00 34.75 3.02
6463 7153 5.833131 TCTGCATGTATGTATACACCTGAGA 59.167 40.000 7.96 1.24 45.11 3.27
6483 7173 2.738135 GTCCTTCGCTTCTCTATCTGC 58.262 52.381 0.00 0.00 0.00 4.26
6492 7182 2.405172 AGAAAACTCGTCCTTCGCTTC 58.595 47.619 0.00 0.00 39.67 3.86
6500 7190 3.064931 CCACCACTAAGAAAACTCGTCC 58.935 50.000 0.00 0.00 0.00 4.79
6501 7191 3.986277 TCCACCACTAAGAAAACTCGTC 58.014 45.455 0.00 0.00 0.00 4.20
6503 7193 4.091509 CGAATCCACCACTAAGAAAACTCG 59.908 45.833 0.00 0.00 0.00 4.18
6522 7212 4.196971 GGAAGGCCACTTGTATAACGAAT 58.803 43.478 5.01 0.00 36.97 3.34
6563 7253 9.443323 GATTTTATTATTCTCTTCCTAGCTCCC 57.557 37.037 0.00 0.00 0.00 4.30
6566 7256 9.921637 CGAGATTTTATTATTCTCTTCCTAGCT 57.078 33.333 0.00 0.00 34.94 3.32
6608 7298 1.406539 CACATACAGGAAATGCAGCCC 59.593 52.381 0.00 0.00 0.00 5.19
6616 7306 6.040504 ACGATAGAGCATACACATACAGGAAA 59.959 38.462 0.00 0.00 41.38 3.13
6620 7424 5.859114 GGAACGATAGAGCATACACATACAG 59.141 44.000 0.00 0.00 41.38 2.74
6655 7459 1.538047 TCCATCAGTCCAAGCAAAGC 58.462 50.000 0.00 0.00 0.00 3.51
6656 7460 3.129988 GGATTCCATCAGTCCAAGCAAAG 59.870 47.826 0.00 0.00 32.23 2.77
6657 7461 3.091545 GGATTCCATCAGTCCAAGCAAA 58.908 45.455 0.00 0.00 32.23 3.68
6658 7462 2.621407 GGGATTCCATCAGTCCAAGCAA 60.621 50.000 4.80 0.00 33.62 3.91
6659 7463 1.064463 GGGATTCCATCAGTCCAAGCA 60.064 52.381 4.80 0.00 33.62 3.91
6739 7652 0.106967 GGAAATCTCCTGTGCCTCCC 60.107 60.000 0.00 0.00 38.88 4.30
6814 7727 1.010125 CTTTGTTGTGTGACGGCCG 60.010 57.895 26.86 26.86 0.00 6.13
6817 7730 1.374560 TGTCCTTTGTTGTGTGACGG 58.625 50.000 0.00 0.00 0.00 4.79
6925 8467 4.572389 CAGATGGTAAATCAGAAACCGGAG 59.428 45.833 9.46 0.00 35.98 4.63
6926 8468 4.513442 CAGATGGTAAATCAGAAACCGGA 58.487 43.478 9.46 0.00 35.98 5.14
6927 8469 3.065371 GCAGATGGTAAATCAGAAACCGG 59.935 47.826 0.00 0.00 35.98 5.28
6941 8483 1.956477 GTTTGTGGAGTTGCAGATGGT 59.044 47.619 0.00 0.00 0.00 3.55
6943 8485 3.316029 TGAAGTTTGTGGAGTTGCAGATG 59.684 43.478 0.00 0.00 0.00 2.90
6971 8515 1.630244 GCATGACAGACGTCCAGCAC 61.630 60.000 13.01 4.44 41.85 4.40
6982 8526 1.753078 AGCAGCCATGGCATGACAG 60.753 57.895 37.18 19.62 44.88 3.51
7048 8630 1.837051 AGGCCACCTCAGTCGACAA 60.837 57.895 19.50 4.29 0.00 3.18
7071 8653 7.271511 GTTGACTAAACCATCTGATCTCATCT 58.728 38.462 0.00 0.00 32.13 2.90
7090 8672 9.801873 ATTTGCTAATAAATAAATGCGTTGACT 57.198 25.926 0.00 0.00 0.00 3.41
7153 8749 6.032094 GTGAGGCATGTTGATCACTTTTATG 58.968 40.000 0.00 0.00 39.15 1.90
7163 8759 3.285484 GAGGATTGTGAGGCATGTTGAT 58.715 45.455 0.00 0.00 0.00 2.57
7166 8762 2.885135 TGAGGATTGTGAGGCATGTT 57.115 45.000 0.00 0.00 0.00 2.71
7180 8776 2.907892 ACTTGAGAAGTCCCATGAGGA 58.092 47.619 0.00 0.00 44.91 3.71
7207 8803 6.097356 CACTATGATGTGCAAGCTCATTTTT 58.903 36.000 10.50 2.99 32.20 1.94
7208 8804 5.184479 ACACTATGATGTGCAAGCTCATTTT 59.816 36.000 10.50 5.01 41.30 1.82
7209 8805 4.703575 ACACTATGATGTGCAAGCTCATTT 59.296 37.500 10.50 5.30 41.30 2.32
7210 8806 4.267536 ACACTATGATGTGCAAGCTCATT 58.732 39.130 10.50 0.00 41.30 2.57
7211 8807 3.882444 ACACTATGATGTGCAAGCTCAT 58.118 40.909 9.13 9.13 41.30 2.90
7212 8808 3.339253 ACACTATGATGTGCAAGCTCA 57.661 42.857 0.00 0.00 41.30 4.26
7213 8809 4.437930 GGAAACACTATGATGTGCAAGCTC 60.438 45.833 0.00 0.00 41.30 4.09
7214 8810 3.441572 GGAAACACTATGATGTGCAAGCT 59.558 43.478 0.00 0.00 41.30 3.74
7215 8811 3.191162 TGGAAACACTATGATGTGCAAGC 59.809 43.478 0.00 0.00 41.30 4.01
7216 8812 5.375417 TTGGAAACACTATGATGTGCAAG 57.625 39.130 0.00 0.00 42.67 4.01
7217 8813 5.781210 TTTGGAAACACTATGATGTGCAA 57.219 34.783 0.00 0.00 42.67 4.08
7218 8814 5.981088 ATTTGGAAACACTATGATGTGCA 57.019 34.783 0.00 0.00 42.67 4.57
7219 8815 8.755696 TTTTATTTGGAAACACTATGATGTGC 57.244 30.769 0.00 0.00 42.67 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.