Multiple sequence alignment - TraesCS2A01G372800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G372800 chr2A 100.000 6946 0 0 1 6946 615349305 615356250 0.000000e+00 12827
1 TraesCS2A01G372800 chr2D 92.125 3619 169 45 2667 6219 473283255 473286823 0.000000e+00 4998
2 TraesCS2A01G372800 chr2D 91.965 2514 123 22 1 2487 473280808 473283269 0.000000e+00 3450
3 TraesCS2A01G372800 chr2D 85.789 577 50 17 6379 6935 473286942 473287506 3.610000e-162 582
4 TraesCS2A01G372800 chr2B 92.996 1999 100 16 508 2487 553618299 553620276 0.000000e+00 2880
5 TraesCS2A01G372800 chr2B 91.967 1917 99 23 2667 4553 553620262 553622153 0.000000e+00 2636
6 TraesCS2A01G372800 chr2B 91.181 1372 78 17 4930 6271 553622512 553623870 0.000000e+00 1823
7 TraesCS2A01G372800 chr2B 94.181 464 23 3 1 464 553617840 553618299 0.000000e+00 704
8 TraesCS2A01G372800 chr2B 89.693 456 35 8 6486 6940 553629629 553630073 7.820000e-159 571
9 TraesCS2A01G372800 chr2B 93.956 364 15 5 4509 4869 553622153 553622512 1.700000e-150 544
10 TraesCS2A01G372800 chr3B 100.000 188 0 0 2481 2668 43716567 43716380 1.430000e-91 348
11 TraesCS2A01G372800 chr3B 100.000 186 0 0 2482 2667 689512977 689513162 1.850000e-90 344
12 TraesCS2A01G372800 chr3B 100.000 186 0 0 2481 2666 756675370 756675185 1.850000e-90 344
13 TraesCS2A01G372800 chrUn 100.000 187 0 0 2480 2666 5429630 5429816 5.160000e-91 346
14 TraesCS2A01G372800 chr3A 100.000 187 0 0 2480 2666 625241545 625241731 5.160000e-91 346
15 TraesCS2A01G372800 chr5B 100.000 186 0 0 2481 2666 282048097 282048282 1.850000e-90 344
16 TraesCS2A01G372800 chr5A 100.000 186 0 0 2482 2667 321925264 321925079 1.850000e-90 344
17 TraesCS2A01G372800 chr4B 100.000 186 0 0 2482 2667 54028416 54028601 1.850000e-90 344
18 TraesCS2A01G372800 chr4B 100.000 186 0 0 2481 2666 564389485 564389670 1.850000e-90 344
19 TraesCS2A01G372800 chr4D 93.939 66 4 0 2814 2879 468618057 468617992 4.430000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G372800 chr2A 615349305 615356250 6945 False 12827.0 12827 100.000000 1 6946 1 chr2A.!!$F1 6945
1 TraesCS2A01G372800 chr2D 473280808 473287506 6698 False 3010.0 4998 89.959667 1 6935 3 chr2D.!!$F1 6934
2 TraesCS2A01G372800 chr2B 553617840 553623870 6030 False 1717.4 2880 92.856200 1 6271 5 chr2B.!!$F2 6270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 695 0.097674 CTGAAATTCAAGAGCCGGCG 59.902 55.0 23.20 6.78 0.00 6.46 F
2383 2432 0.171903 CCAAGCTTCCTGGATTTGCG 59.828 55.0 0.00 0.00 0.00 4.85 F
2565 2615 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.0 0.00 0.00 0.00 6.13 F
2566 2616 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.0 0.00 0.00 0.00 6.13 F
2754 2804 0.108804 CCAGTGTGTTACTCGCGGAT 60.109 55.0 6.13 0.00 37.60 4.18 F
3551 3608 0.246360 GTTTTACATGGTGCTGGGCC 59.754 55.0 0.00 0.00 0.00 5.80 F
4896 5024 0.689055 TGCTCATTGGCAGTGTCTCT 59.311 50.0 9.95 0.00 37.29 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 2596 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.0 0.0 0.0 0.00 6.53 R
3273 3326 0.311165 AACTCACGGTCTCAGTCACG 59.689 55.0 0.0 0.0 0.00 4.35 R
3657 3714 0.396435 TCACCGACCAATGAGCAACT 59.604 50.0 0.0 0.0 0.00 3.16 R
4382 4462 0.459585 GCATGTCCACATACCGTCGT 60.460 55.0 0.0 0.0 34.26 4.34 R
4517 4598 2.614057 CCGAAATGAGTGGAACATAGGC 59.386 50.0 0.0 0.0 44.52 3.93 R
5175 5311 0.250858 CACATGGCAGTGGTTGAGGA 60.251 55.0 0.0 0.0 35.88 3.71 R
6134 6310 0.387239 CCGCAGCACTAAAAGCCAAC 60.387 55.0 0.0 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 3.748048 TCAACAGACAATGCAGAGTAAGC 59.252 43.478 0.00 0.00 0.00 3.09
254 255 3.041211 CTCCCACAATCTATCAGGACCA 58.959 50.000 0.00 0.00 0.00 4.02
262 263 6.204301 CACAATCTATCAGGACCATAAGCTTG 59.796 42.308 9.86 0.00 0.00 4.01
344 345 2.659757 CGTCTTGATTGCTGCATTTGTG 59.340 45.455 1.84 0.00 0.00 3.33
494 495 3.195825 ACTGATACACTAGGTTCCAGTGC 59.804 47.826 15.74 6.22 45.96 4.40
694 695 0.097674 CTGAAATTCAAGAGCCGGCG 59.902 55.000 23.20 6.78 0.00 6.46
697 698 1.648467 AAATTCAAGAGCCGGCGAGC 61.648 55.000 23.20 14.98 0.00 5.03
723 724 2.679996 TCCTGCACCAGCGAGCTA 60.680 61.111 0.00 0.00 46.23 3.32
734 735 2.362397 CCAGCGAGCTAATAAGGTGAGA 59.638 50.000 0.00 0.00 34.41 3.27
850 865 0.974383 GGTTTGGTCGAAGGAGAGGA 59.026 55.000 0.00 0.00 0.00 3.71
940 958 3.041940 GACACCGGTTCACTGGCG 61.042 66.667 2.97 0.00 46.43 5.69
955 973 4.329545 GCGACTGGGCCTGTGGAA 62.330 66.667 25.68 0.00 0.00 3.53
957 975 1.966451 CGACTGGGCCTGTGGAAAC 60.966 63.158 21.65 4.99 0.00 2.78
958 976 1.603739 GACTGGGCCTGTGGAAACC 60.604 63.158 21.65 1.20 0.00 3.27
992 1018 0.315568 GTTCTCACACTCGCCACTCT 59.684 55.000 0.00 0.00 0.00 3.24
1273 1306 3.827898 GCGTGACGAGGAGGAGGG 61.828 72.222 10.10 0.00 0.00 4.30
1446 1479 2.202623 CGGAAAGCGAGTCGGAGG 60.203 66.667 15.52 0.00 0.00 4.30
1447 1480 2.697761 CGGAAAGCGAGTCGGAGGA 61.698 63.158 15.52 0.00 0.00 3.71
1584 1617 8.103935 GGGAAAAGGATAAGAAGAAGAAGAAGA 58.896 37.037 0.00 0.00 0.00 2.87
1698 1731 5.395103 TGAGGATCTTGCTTCTTAGCTCTTC 60.395 44.000 0.00 0.00 41.72 2.87
1818 1854 7.500992 TGAGGCTATGTTAGTTAAGGATGAAG 58.499 38.462 0.00 0.00 0.00 3.02
1822 1858 6.017852 GCTATGTTAGTTAAGGATGAAGGTGC 60.018 42.308 0.00 0.00 0.00 5.01
1825 1861 3.418684 AGTTAAGGATGAAGGTGCGTT 57.581 42.857 0.00 0.00 0.00 4.84
1831 1867 1.334960 GGATGAAGGTGCGTTGTGTTG 60.335 52.381 0.00 0.00 0.00 3.33
1867 1910 4.047059 CCGCACTGCCCAGCAAAG 62.047 66.667 0.00 0.00 38.41 2.77
1868 1911 2.979676 CGCACTGCCCAGCAAAGA 60.980 61.111 0.00 0.00 38.41 2.52
1932 1975 2.359900 GCCTTTGATGAGTGGATTCGT 58.640 47.619 0.00 0.00 0.00 3.85
1972 2015 4.897025 ACAATTTTGCACAAACCAATGG 57.103 36.364 0.00 0.00 0.00 3.16
1998 2041 2.233271 CCTGAAACTGCTGATGGTTGT 58.767 47.619 0.00 0.00 0.00 3.32
2086 2135 6.932960 CACCTATTCATCATAGATGAGCACAA 59.067 38.462 9.38 0.00 40.64 3.33
2089 2138 6.862711 ATTCATCATAGATGAGCACAACTG 57.137 37.500 9.38 0.00 40.64 3.16
2167 2216 1.750930 CACCTGGAGTGCAGACTGT 59.249 57.895 14.03 0.00 40.28 3.55
2170 2219 2.027745 CACCTGGAGTGCAGACTGTATT 60.028 50.000 14.03 0.00 40.28 1.89
2176 2225 6.183360 CCTGGAGTGCAGACTGTATTAATACT 60.183 42.308 22.82 7.06 34.41 2.12
2269 2318 9.890629 AGTTCATAATAGTAACTGATTCTTGCA 57.109 29.630 0.00 0.00 32.38 4.08
2291 2340 9.777297 TTGCAGCTATATAGAATCACAATAACA 57.223 29.630 14.16 0.00 0.00 2.41
2328 2377 8.352942 ACAGATAAATCACTTGTTTGTTTCTCC 58.647 33.333 0.00 0.00 0.00 3.71
2329 2378 8.352201 CAGATAAATCACTTGTTTGTTTCTCCA 58.648 33.333 0.00 0.00 0.00 3.86
2330 2379 8.352942 AGATAAATCACTTGTTTGTTTCTCCAC 58.647 33.333 0.00 0.00 0.00 4.02
2331 2380 5.913137 AATCACTTGTTTGTTTCTCCACA 57.087 34.783 0.00 0.00 0.00 4.17
2332 2381 6.469782 AATCACTTGTTTGTTTCTCCACAT 57.530 33.333 0.00 0.00 0.00 3.21
2333 2382 5.499139 TCACTTGTTTGTTTCTCCACATC 57.501 39.130 0.00 0.00 0.00 3.06
2334 2383 4.338118 TCACTTGTTTGTTTCTCCACATCC 59.662 41.667 0.00 0.00 0.00 3.51
2335 2384 4.339247 CACTTGTTTGTTTCTCCACATCCT 59.661 41.667 0.00 0.00 0.00 3.24
2336 2385 4.580580 ACTTGTTTGTTTCTCCACATCCTC 59.419 41.667 0.00 0.00 0.00 3.71
2337 2386 4.437682 TGTTTGTTTCTCCACATCCTCT 57.562 40.909 0.00 0.00 0.00 3.69
2338 2387 4.389374 TGTTTGTTTCTCCACATCCTCTC 58.611 43.478 0.00 0.00 0.00 3.20
2383 2432 0.171903 CCAAGCTTCCTGGATTTGCG 59.828 55.000 0.00 0.00 0.00 4.85
2412 2461 1.663643 GCATGCATCAGCCACAAATTG 59.336 47.619 14.21 0.00 41.13 2.32
2447 2497 2.413371 GCAAAAGATGAGCACGGAAGAC 60.413 50.000 0.00 0.00 0.00 3.01
2477 2527 2.635427 CCTCTTATTGGAGAGCCCTACC 59.365 54.545 0.00 0.00 41.46 3.18
2478 2528 3.309296 CTCTTATTGGAGAGCCCTACCA 58.691 50.000 0.00 0.00 37.01 3.25
2479 2529 3.039011 TCTTATTGGAGAGCCCTACCAC 58.961 50.000 0.00 0.00 35.38 4.16
2480 2530 1.802553 TATTGGAGAGCCCTACCACC 58.197 55.000 0.00 0.00 35.38 4.61
2481 2531 0.988678 ATTGGAGAGCCCTACCACCC 60.989 60.000 0.00 0.00 35.38 4.61
2482 2532 2.119847 TTGGAGAGCCCTACCACCCT 62.120 60.000 0.00 0.00 35.38 4.34
2483 2533 1.762858 GGAGAGCCCTACCACCCTC 60.763 68.421 0.00 0.00 0.00 4.30
2484 2534 1.311747 GAGAGCCCTACCACCCTCT 59.688 63.158 0.00 0.00 37.38 3.69
2485 2535 1.002274 AGAGCCCTACCACCCTCTG 59.998 63.158 0.00 0.00 33.66 3.35
2486 2536 1.306226 GAGCCCTACCACCCTCTGT 60.306 63.158 0.00 0.00 0.00 3.41
2487 2537 0.910088 GAGCCCTACCACCCTCTGTT 60.910 60.000 0.00 0.00 0.00 3.16
2488 2538 0.475828 AGCCCTACCACCCTCTGTTT 60.476 55.000 0.00 0.00 0.00 2.83
2489 2539 0.404426 GCCCTACCACCCTCTGTTTT 59.596 55.000 0.00 0.00 0.00 2.43
2490 2540 1.203013 GCCCTACCACCCTCTGTTTTT 60.203 52.381 0.00 0.00 0.00 1.94
2491 2541 2.040679 GCCCTACCACCCTCTGTTTTTA 59.959 50.000 0.00 0.00 0.00 1.52
2492 2542 3.499021 GCCCTACCACCCTCTGTTTTTAA 60.499 47.826 0.00 0.00 0.00 1.52
2493 2543 4.332828 CCCTACCACCCTCTGTTTTTAAG 58.667 47.826 0.00 0.00 0.00 1.85
2494 2544 4.332828 CCTACCACCCTCTGTTTTTAAGG 58.667 47.826 0.00 0.00 0.00 2.69
2495 2545 2.594131 ACCACCCTCTGTTTTTAAGGC 58.406 47.619 0.00 0.00 0.00 4.35
2496 2546 1.539827 CCACCCTCTGTTTTTAAGGCG 59.460 52.381 0.00 0.00 0.00 5.52
2497 2547 2.227194 CACCCTCTGTTTTTAAGGCGT 58.773 47.619 0.00 0.00 0.00 5.68
2498 2548 2.225727 CACCCTCTGTTTTTAAGGCGTC 59.774 50.000 0.00 0.00 0.00 5.19
2499 2549 1.810755 CCCTCTGTTTTTAAGGCGTCC 59.189 52.381 0.00 0.00 0.00 4.79
2500 2550 1.810755 CCTCTGTTTTTAAGGCGTCCC 59.189 52.381 0.00 0.00 0.00 4.46
2501 2551 1.463444 CTCTGTTTTTAAGGCGTCCCG 59.537 52.381 0.00 0.00 35.76 5.14
2513 2563 4.699522 GTCCCGCCTTGGACGCTT 62.700 66.667 0.00 0.00 44.98 4.68
2514 2564 2.998480 TCCCGCCTTGGACGCTTA 60.998 61.111 0.00 0.00 42.00 3.09
2515 2565 2.511600 CCCGCCTTGGACGCTTAG 60.512 66.667 0.00 0.00 42.00 2.18
2516 2566 2.511600 CCGCCTTGGACGCTTAGG 60.512 66.667 0.00 0.00 42.00 2.69
2527 2577 4.014065 GCTTAGGCGACGCTTAGG 57.986 61.111 20.77 17.82 0.00 2.69
2528 2578 2.238437 GCTTAGGCGACGCTTAGGC 61.238 63.158 25.71 25.71 36.29 3.93
2557 2607 3.053291 CCGCCAGCGCCTTACAAA 61.053 61.111 2.29 0.00 38.24 2.83
2558 2608 2.406616 CCGCCAGCGCCTTACAAAT 61.407 57.895 2.29 0.00 38.24 2.32
2559 2609 1.092921 CCGCCAGCGCCTTACAAATA 61.093 55.000 2.29 0.00 38.24 1.40
2560 2610 0.944386 CGCCAGCGCCTTACAAATAT 59.056 50.000 2.29 0.00 0.00 1.28
2561 2611 1.334059 CGCCAGCGCCTTACAAATATG 60.334 52.381 2.29 0.00 0.00 1.78
2562 2612 1.600413 GCCAGCGCCTTACAAATATGC 60.600 52.381 2.29 0.00 0.00 3.14
2563 2613 1.001378 CCAGCGCCTTACAAATATGCC 60.001 52.381 2.29 0.00 0.00 4.40
2564 2614 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
2565 2615 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
2566 2616 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
2567 2617 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
2568 2618 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
2569 2619 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
2570 2620 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
2571 2621 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
2572 2622 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
2642 2692 2.427753 CCCCCAGCGCCTTAGATC 59.572 66.667 2.29 0.00 0.00 2.75
2643 2693 2.029666 CCCCAGCGCCTTAGATCG 59.970 66.667 2.29 0.00 0.00 3.69
2649 2699 2.518711 GCGCCTTAGATCGCCTTAC 58.481 57.895 0.00 0.00 45.01 2.34
2650 2700 0.944788 GCGCCTTAGATCGCCTTACC 60.945 60.000 0.00 0.00 45.01 2.85
2651 2701 0.663568 CGCCTTAGATCGCCTTACCG 60.664 60.000 0.00 0.00 0.00 4.02
2652 2702 0.944788 GCCTTAGATCGCCTTACCGC 60.945 60.000 0.00 0.00 0.00 5.68
2653 2703 0.319641 CCTTAGATCGCCTTACCGCC 60.320 60.000 0.00 0.00 0.00 6.13
2654 2704 0.674534 CTTAGATCGCCTTACCGCCT 59.325 55.000 0.00 0.00 0.00 5.52
2655 2705 1.068741 CTTAGATCGCCTTACCGCCTT 59.931 52.381 0.00 0.00 0.00 4.35
2656 2706 1.985473 TAGATCGCCTTACCGCCTTA 58.015 50.000 0.00 0.00 0.00 2.69
2657 2707 1.117150 AGATCGCCTTACCGCCTTAA 58.883 50.000 0.00 0.00 0.00 1.85
2658 2708 1.483415 AGATCGCCTTACCGCCTTAAA 59.517 47.619 0.00 0.00 0.00 1.52
2659 2709 2.093341 AGATCGCCTTACCGCCTTAAAA 60.093 45.455 0.00 0.00 0.00 1.52
2660 2710 2.181954 TCGCCTTACCGCCTTAAAAA 57.818 45.000 0.00 0.00 0.00 1.94
2661 2711 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
2662 2712 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
2663 2713 2.162809 CGCCTTACCGCCTTAAAAACAT 59.837 45.455 0.00 0.00 0.00 2.71
2664 2714 3.374678 CGCCTTACCGCCTTAAAAACATA 59.625 43.478 0.00 0.00 0.00 2.29
2665 2715 4.495184 CGCCTTACCGCCTTAAAAACATAG 60.495 45.833 0.00 0.00 0.00 2.23
2666 2716 4.732647 GCCTTACCGCCTTAAAAACATAGC 60.733 45.833 0.00 0.00 0.00 2.97
2667 2717 4.638865 CCTTACCGCCTTAAAAACATAGCT 59.361 41.667 0.00 0.00 0.00 3.32
2668 2718 5.818857 CCTTACCGCCTTAAAAACATAGCTA 59.181 40.000 0.00 0.00 0.00 3.32
2669 2719 6.238293 CCTTACCGCCTTAAAAACATAGCTAC 60.238 42.308 0.00 0.00 0.00 3.58
2691 2741 3.134623 CCACCTCTATGTGAGTGCCATAA 59.865 47.826 0.00 0.00 41.11 1.90
2750 2800 1.344942 CGAGCCAGTGTGTTACTCGC 61.345 60.000 0.00 0.00 42.97 5.03
2754 2804 0.108804 CCAGTGTGTTACTCGCGGAT 60.109 55.000 6.13 0.00 37.60 4.18
2756 2806 2.451132 CAGTGTGTTACTCGCGGATAG 58.549 52.381 6.13 0.00 37.60 2.08
2772 2822 0.465705 ATAGTGGCGATGGGTGAGTG 59.534 55.000 0.00 0.00 0.00 3.51
2786 2836 3.067833 GGTGAGTGACCTAAGTCTTTGC 58.932 50.000 0.00 0.00 43.91 3.68
2788 2838 2.972713 TGAGTGACCTAAGTCTTTGCCT 59.027 45.455 0.00 0.00 43.91 4.75
2789 2839 3.391296 TGAGTGACCTAAGTCTTTGCCTT 59.609 43.478 0.00 0.00 43.91 4.35
2795 2845 6.485648 GTGACCTAAGTCTTTGCCTTAAAAGA 59.514 38.462 0.00 0.00 43.91 2.52
2812 2862 9.200817 CCTTAAAAGAATAATCCTGGAATTCCA 57.799 33.333 25.53 25.53 45.30 3.53
2848 2898 5.850557 TTTGGAGAAGTGCTGATTTTCAA 57.149 34.783 0.00 0.00 0.00 2.69
2850 2900 4.717877 TGGAGAAGTGCTGATTTTCAAGA 58.282 39.130 0.00 0.00 0.00 3.02
2853 2903 5.009010 GGAGAAGTGCTGATTTTCAAGAACA 59.991 40.000 0.00 0.00 0.00 3.18
2856 2906 5.179045 AGTGCTGATTTTCAAGAACACAG 57.821 39.130 0.00 0.00 0.00 3.66
2907 2957 9.851686 TTATGATAATCATCTGTGCCTTAAACT 57.148 29.630 0.00 0.00 38.26 2.66
2921 2971 6.017026 GTGCCTTAAACTTATCCTAATGCCTC 60.017 42.308 0.00 0.00 0.00 4.70
2933 2983 6.266131 TCCTAATGCCTCAAAGTTGGATAT 57.734 37.500 0.00 0.00 0.00 1.63
2976 3026 2.945440 GCTTCATGGATGGTTGCACCTA 60.945 50.000 6.83 0.00 39.58 3.08
3011 3061 1.210155 GGCTGTCGCAAATGTCCAC 59.790 57.895 0.00 0.00 38.10 4.02
3037 3087 0.406361 GTTCCATGTGGGTTGGGGTA 59.594 55.000 0.00 0.00 38.11 3.69
3195 3245 6.590677 TGAATTGTCATATGCAAACACCATTG 59.409 34.615 13.92 0.00 0.00 2.82
3245 3295 9.745880 AGAATCATTCTGTAATCATTGATTTGC 57.254 29.630 16.62 10.84 38.91 3.68
3286 3339 1.605058 AATCCCCGTGACTGAGACCG 61.605 60.000 0.00 0.00 0.00 4.79
3297 3350 3.887110 TGACTGAGACCGTGAGTTTAGAA 59.113 43.478 0.00 0.00 0.00 2.10
3300 3353 4.281182 ACTGAGACCGTGAGTTTAGAATGT 59.719 41.667 0.00 0.00 0.00 2.71
3307 3360 5.924825 ACCGTGAGTTTAGAATGTAGACAAC 59.075 40.000 0.00 0.00 0.00 3.32
3374 3428 7.281841 TCTCATGAGTTGAACCATGCAATATA 58.718 34.615 21.92 0.00 39.82 0.86
3392 3446 6.202954 GCAATATATTCTGTAGGAACAAGCGT 59.797 38.462 0.00 0.00 36.70 5.07
3411 3465 2.401766 CCAGAGTTCACCGCATGGC 61.402 63.158 0.00 0.00 39.70 4.40
3458 3512 6.948353 TGTATTTCTATCGCTCTTTTGATGC 58.052 36.000 0.00 0.00 0.00 3.91
3521 3578 2.271944 AGGGTCAGTGTAAACAAGGC 57.728 50.000 0.00 0.00 0.00 4.35
3523 3580 1.541670 GGGTCAGTGTAAACAAGGCGA 60.542 52.381 0.00 0.00 0.00 5.54
3547 3604 2.607771 GCCACTGTTTTACATGGTGCTG 60.608 50.000 0.00 0.00 32.79 4.41
3551 3608 0.246360 GTTTTACATGGTGCTGGGCC 59.754 55.000 0.00 0.00 0.00 5.80
3585 3642 7.241628 AGCCCCAAAGGAAATATTTATCTAGG 58.758 38.462 0.00 7.71 38.24 3.02
3589 3646 9.078990 CCCAAAGGAAATATTTATCTAGGAACC 57.921 37.037 0.00 0.00 33.47 3.62
3610 3667 5.145564 ACCAGGACTAGTGTTCTTTCAGTA 58.854 41.667 0.00 0.00 27.14 2.74
3613 3670 6.383415 CAGGACTAGTGTTCTTTCAGTAGAC 58.617 44.000 0.00 8.35 41.32 2.59
3647 3704 4.147133 GTCTTCAGCAAAAAGTTTCATCGC 59.853 41.667 0.00 0.00 0.00 4.58
3657 3714 3.034721 AGTTTCATCGCCGTGAAGTTA 57.965 42.857 3.20 0.00 39.13 2.24
3665 3722 1.508632 GCCGTGAAGTTAGTTGCTCA 58.491 50.000 0.00 0.00 0.00 4.26
3696 3753 5.529800 GGTGAGTGTTTGGAGCTTAAGTTAA 59.470 40.000 4.02 0.00 0.00 2.01
3705 3779 5.812652 TGGAGCTTAAGTTAACAAAACACG 58.187 37.500 8.61 0.00 0.00 4.49
3731 3807 5.852282 TTTGTTCTCCCTCTTTCTTTTGG 57.148 39.130 0.00 0.00 0.00 3.28
3754 3830 6.723977 TGGTATGCCCAATTTAGAGTTTCTTT 59.276 34.615 0.00 0.00 41.50 2.52
3758 3834 7.118496 TGCCCAATTTAGAGTTTCTTTCAAA 57.882 32.000 0.00 0.00 0.00 2.69
3768 3844 5.014808 AGTTTCTTTCAAATTGTGCTGCT 57.985 34.783 0.00 0.00 0.00 4.24
3791 3867 9.866655 TGCTCTATTGGATCTTATTTTGGTTAT 57.133 29.630 0.00 0.00 0.00 1.89
3836 3912 7.227156 AGTTCTGTTTTCACTTATCAGGTCAT 58.773 34.615 0.00 0.00 0.00 3.06
3916 3992 3.932089 GCTCTCAGGCTTTTTACTCTCAG 59.068 47.826 0.00 0.00 0.00 3.35
3919 3995 4.021016 TCTCAGGCTTTTTACTCTCAGTCC 60.021 45.833 0.00 0.00 0.00 3.85
3948 4024 9.677567 TTTAGTGTTTTTCTTGCTTATGATGTC 57.322 29.630 0.00 0.00 0.00 3.06
3953 4029 4.952262 TTCTTGCTTATGATGTCACTGC 57.048 40.909 0.00 0.00 0.00 4.40
3962 4038 9.123902 TGCTTATGATGTCACTGCTAATTTTAT 57.876 29.630 0.00 0.00 0.00 1.40
4166 4244 2.484770 GGAAGACCACAACACAGCTACA 60.485 50.000 0.00 0.00 35.97 2.74
4211 4289 7.172532 TGCACGTTTCTTTTCATAGACTGTTAT 59.827 33.333 0.00 0.00 0.00 1.89
4252 4332 8.593945 TTGCTAATGGAATTTATGTTTCTCCT 57.406 30.769 0.00 0.00 37.87 3.69
4316 4396 4.551702 TCAACGGATGATGGAGAAAGAA 57.448 40.909 0.00 0.00 31.50 2.52
4382 4462 9.961265 CGTACAGTATTTAATGATGAGGAAGTA 57.039 33.333 0.00 0.00 0.00 2.24
4434 4514 5.057149 GGGTCTGTATACCTGCAATAACAG 58.943 45.833 0.00 7.61 39.65 3.16
4496 4577 7.439381 TGAAGTTTACTTTACCTGTAGACCTG 58.561 38.462 0.00 0.00 36.11 4.00
4502 4583 5.149976 ACTTTACCTGTAGACCTGTGGTAA 58.850 41.667 0.00 0.00 40.27 2.85
4504 4585 6.955851 ACTTTACCTGTAGACCTGTGGTAATA 59.044 38.462 0.00 0.00 41.19 0.98
4517 4598 7.049754 ACCTGTGGTAATAAACTATTAACCGG 58.950 38.462 0.00 0.00 37.50 5.28
4536 4617 2.614057 CGGCCTATGTTCCACTCATTTC 59.386 50.000 0.00 0.00 0.00 2.17
4540 4621 1.463674 ATGTTCCACTCATTTCGGGC 58.536 50.000 0.00 0.00 0.00 6.13
4544 4625 1.750193 TCCACTCATTTCGGGCAATC 58.250 50.000 0.00 0.00 0.00 2.67
4549 4630 3.016736 ACTCATTTCGGGCAATCGAATT 58.983 40.909 9.03 4.33 46.50 2.17
4559 4684 4.323336 CGGGCAATCGAATTGTTTTTGTAG 59.677 41.667 0.00 0.00 42.20 2.74
4625 4750 3.618019 GCCATGCAATGTTCCACAGAAAT 60.618 43.478 0.00 0.00 44.81 2.17
4638 4763 8.788806 TGTTCCACAGAAATACAATTACGAAAT 58.211 29.630 0.00 0.00 32.58 2.17
4806 4934 7.333528 TGCAAACTGGAATGGTTAGAATATC 57.666 36.000 0.00 0.00 0.00 1.63
4807 4935 6.889177 TGCAAACTGGAATGGTTAGAATATCA 59.111 34.615 0.00 0.00 0.00 2.15
4816 4944 9.788960 GGAATGGTTAGAATATCACAGTTTTTC 57.211 33.333 0.00 0.00 0.00 2.29
4833 4961 7.087007 CAGTTTTTCTTTTCTGCTCCTATTCC 58.913 38.462 0.00 0.00 0.00 3.01
4862 4990 5.165961 TCAGTTTATCCTCTGAACTTGGG 57.834 43.478 0.00 0.00 37.69 4.12
4864 4992 5.046304 TCAGTTTATCCTCTGAACTTGGGAG 60.046 44.000 0.00 0.00 37.69 4.30
4872 5000 6.610830 TCCTCTGAACTTGGGAGTTATTTTT 58.389 36.000 0.00 0.00 45.88 1.94
4895 5023 1.747709 ATGCTCATTGGCAGTGTCTC 58.252 50.000 9.95 1.65 45.75 3.36
4896 5024 0.689055 TGCTCATTGGCAGTGTCTCT 59.311 50.000 9.95 0.00 37.29 3.10
4901 5029 3.141398 TCATTGGCAGTGTCTCTTGTTC 58.859 45.455 9.95 0.00 0.00 3.18
4903 5031 2.245159 TGGCAGTGTCTCTTGTTCTG 57.755 50.000 0.00 0.00 0.00 3.02
4916 5044 7.178451 TGTCTCTTGTTCTGTCCAATATCTACA 59.822 37.037 0.00 0.00 0.00 2.74
4943 5071 6.882610 AAAAGTGTCTCATTGACTGCATAA 57.117 33.333 0.00 0.00 45.54 1.90
4951 5079 5.412594 TCTCATTGACTGCATAAGTTTGACC 59.587 40.000 0.00 0.00 40.07 4.02
4978 5111 1.465777 GCTGCCCAATTTTGTTGCATC 59.534 47.619 0.00 0.00 34.80 3.91
4991 5124 5.559427 TTGTTGCATCGTTAGCATACAAT 57.441 34.783 15.17 0.00 42.33 2.71
5017 5151 7.634671 TCTTTCATGTATCCTAGACGTGTTA 57.365 36.000 0.00 0.00 35.66 2.41
5022 5156 6.600427 TCATGTATCCTAGACGTGTTAAGTCA 59.400 38.462 0.00 0.00 40.84 3.41
5038 5172 4.361451 AAGTCATCCATGAATGAAACGC 57.639 40.909 0.00 0.00 38.75 4.84
5045 5179 7.515362 TCATCCATGAATGAAACGCAGTTGTA 61.515 38.462 0.00 0.00 41.79 2.41
5060 5194 4.451900 CAGTTGTAAGTTCTGTCTTGGGT 58.548 43.478 0.00 0.00 0.00 4.51
5061 5195 5.607477 CAGTTGTAAGTTCTGTCTTGGGTA 58.393 41.667 0.00 0.00 0.00 3.69
5063 5197 5.365895 AGTTGTAAGTTCTGTCTTGGGTACT 59.634 40.000 0.00 0.00 0.00 2.73
5064 5198 6.552350 AGTTGTAAGTTCTGTCTTGGGTACTA 59.448 38.462 0.00 0.00 0.00 1.82
5068 5202 5.725325 AGTTCTGTCTTGGGTACTAACTC 57.275 43.478 0.00 0.00 0.00 3.01
5077 5213 2.559668 TGGGTACTAACTCACTCGGTTG 59.440 50.000 0.00 0.00 28.42 3.77
5139 5275 7.247456 TGTTCTGTTGGGAACATATGTACTA 57.753 36.000 9.21 0.48 46.91 1.82
5181 5317 4.553330 GGTTATGACCTCAAGTCCTCAA 57.447 45.455 0.00 0.00 45.68 3.02
5200 5336 2.359107 CACTGCCATGTGCTCGGT 60.359 61.111 7.54 2.46 42.00 4.69
5223 5362 7.043391 CGGTCATTATGTTATATAGGTGCATCG 60.043 40.741 0.00 0.00 0.00 3.84
5422 5563 8.574251 TTATTATGCAGACACCAAACATTAGT 57.426 30.769 0.00 0.00 0.00 2.24
5453 5594 9.134734 GTTTACATGAAAGTCACTTTTTGTTCA 57.865 29.630 19.26 7.93 33.49 3.18
5454 5595 9.698309 TTTACATGAAAGTCACTTTTTGTTCAA 57.302 25.926 19.26 12.63 33.49 2.69
5455 5596 9.868277 TTACATGAAAGTCACTTTTTGTTCAAT 57.132 25.926 19.26 4.23 33.49 2.57
5456 5597 8.411318 ACATGAAAGTCACTTTTTGTTCAATC 57.589 30.769 3.76 0.00 33.49 2.67
5457 5598 8.034215 ACATGAAAGTCACTTTTTGTTCAATCA 58.966 29.630 3.76 0.00 33.49 2.57
5492 5633 9.700831 ACCTATTATTATTCTTGTTTTGCTCCT 57.299 29.630 0.00 0.00 0.00 3.69
5598 5739 1.497161 CCCTCATTCCGACCCTTACT 58.503 55.000 0.00 0.00 0.00 2.24
5611 5752 6.428771 TCCGACCCTTACTAAAATTTCAGTTG 59.571 38.462 0.00 0.00 0.00 3.16
5624 5765 3.574284 TTCAGTTGGATGGAAAATGCG 57.426 42.857 0.00 0.00 0.00 4.73
5626 5767 1.067706 CAGTTGGATGGAAAATGCGCA 60.068 47.619 14.96 14.96 0.00 6.09
5728 5873 0.792640 GCGTCTTGTGGACAGACATG 59.207 55.000 0.00 0.00 44.70 3.21
5912 6057 2.199291 GCTGTATGCATCAGTTTGGC 57.801 50.000 20.20 8.74 42.31 4.52
5939 6084 5.862924 TGAGCTGTAAGATTTTTCGAAGG 57.137 39.130 0.00 0.00 34.07 3.46
6084 6254 1.555992 TGCGCTTTAACCCTTAGGCTA 59.444 47.619 9.73 0.00 36.11 3.93
6129 6305 3.028590 GTACGAGGGTATGCGCGC 61.029 66.667 27.26 27.26 0.00 6.86
6134 6310 4.873129 AGGGTATGCGCGCGACTG 62.873 66.667 37.18 4.39 0.00 3.51
6204 6380 5.696270 TGTGCTAGGTATGAAGAATATTGCG 59.304 40.000 0.00 0.00 0.00 4.85
6228 6404 3.270027 GCAAAAAGCAACCACCTTTCTT 58.730 40.909 0.00 0.00 44.79 2.52
6235 6411 2.668279 GCAACCACCTTTCTTATGCGTG 60.668 50.000 0.00 0.00 0.00 5.34
6242 6418 5.760253 CCACCTTTCTTATGCGTGAATAGAT 59.240 40.000 0.00 0.00 0.00 1.98
6256 6432 6.312918 GCGTGAATAGATTAAACAGGAAGTGA 59.687 38.462 0.00 0.00 0.00 3.41
6271 6447 3.120165 GGAAGTGAATTCGAGAAGCAACC 60.120 47.826 0.04 0.00 38.95 3.77
6272 6448 3.126001 AGTGAATTCGAGAAGCAACCA 57.874 42.857 0.04 0.00 0.00 3.67
6273 6449 2.808543 AGTGAATTCGAGAAGCAACCAC 59.191 45.455 0.04 0.00 0.00 4.16
6274 6450 2.095718 GTGAATTCGAGAAGCAACCACC 60.096 50.000 0.04 0.00 0.00 4.61
6275 6451 2.224523 TGAATTCGAGAAGCAACCACCT 60.225 45.455 0.04 0.00 0.00 4.00
6276 6452 2.568623 ATTCGAGAAGCAACCACCTT 57.431 45.000 0.00 0.00 0.00 3.50
6277 6453 2.341846 TTCGAGAAGCAACCACCTTT 57.658 45.000 0.00 0.00 0.00 3.11
6278 6454 1.878953 TCGAGAAGCAACCACCTTTC 58.121 50.000 0.00 0.00 0.00 2.62
6279 6455 1.140052 TCGAGAAGCAACCACCTTTCA 59.860 47.619 0.00 0.00 0.00 2.69
6280 6456 2.154462 CGAGAAGCAACCACCTTTCAT 58.846 47.619 0.00 0.00 0.00 2.57
6281 6457 3.007506 TCGAGAAGCAACCACCTTTCATA 59.992 43.478 0.00 0.00 0.00 2.15
6282 6458 3.941483 CGAGAAGCAACCACCTTTCATAT 59.059 43.478 0.00 0.00 0.00 1.78
6283 6459 4.201851 CGAGAAGCAACCACCTTTCATATG 60.202 45.833 0.00 0.00 0.00 1.78
6284 6460 3.445096 AGAAGCAACCACCTTTCATATGC 59.555 43.478 0.00 0.00 0.00 3.14
6285 6461 3.091633 AGCAACCACCTTTCATATGCT 57.908 42.857 0.00 0.00 37.80 3.79
6286 6462 3.434309 AGCAACCACCTTTCATATGCTT 58.566 40.909 0.00 0.00 39.44 3.91
6287 6463 3.194116 AGCAACCACCTTTCATATGCTTG 59.806 43.478 0.00 0.00 39.44 4.01
6288 6464 3.193267 GCAACCACCTTTCATATGCTTGA 59.807 43.478 0.00 0.00 0.00 3.02
6289 6465 4.142093 GCAACCACCTTTCATATGCTTGAT 60.142 41.667 0.00 0.00 0.00 2.57
6290 6466 5.625197 GCAACCACCTTTCATATGCTTGATT 60.625 40.000 0.00 0.00 0.00 2.57
6291 6467 6.405731 GCAACCACCTTTCATATGCTTGATTA 60.406 38.462 0.00 0.00 0.00 1.75
6292 6468 6.949352 ACCACCTTTCATATGCTTGATTAG 57.051 37.500 0.00 0.00 0.00 1.73
6293 6469 6.662755 ACCACCTTTCATATGCTTGATTAGA 58.337 36.000 0.00 0.00 0.00 2.10
6294 6470 6.769822 ACCACCTTTCATATGCTTGATTAGAG 59.230 38.462 0.00 0.00 0.00 2.43
6295 6471 6.994496 CCACCTTTCATATGCTTGATTAGAGA 59.006 38.462 0.00 0.00 0.00 3.10
6306 6482 4.692625 GCTTGATTAGAGAAGCAACAGTGA 59.307 41.667 0.00 0.00 43.44 3.41
6307 6483 5.163874 GCTTGATTAGAGAAGCAACAGTGAG 60.164 44.000 0.00 0.00 43.44 3.51
6311 6487 6.425114 TGATTAGAGAAGCAACAGTGAGTTTC 59.575 38.462 0.00 3.07 38.74 2.78
6319 6495 5.798132 AGCAACAGTGAGTTTCTATCATCA 58.202 37.500 0.00 0.00 38.74 3.07
6326 6502 9.125026 ACAGTGAGTTTCTATCATCAAAGTTTT 57.875 29.630 0.00 0.00 0.00 2.43
6327 6503 9.956720 CAGTGAGTTTCTATCATCAAAGTTTTT 57.043 29.630 0.00 0.00 0.00 1.94
6361 6537 5.530915 TCAGAAATGGTGTAACAGTGAAAGG 59.469 40.000 0.00 0.00 39.98 3.11
6365 6541 0.110823 GTGTAACAGTGAAAGGCGCG 60.111 55.000 0.00 0.00 36.32 6.86
6366 6542 0.249531 TGTAACAGTGAAAGGCGCGA 60.250 50.000 12.10 0.00 0.00 5.87
6367 6543 0.438830 GTAACAGTGAAAGGCGCGAG 59.561 55.000 12.10 0.00 0.00 5.03
6368 6544 0.315886 TAACAGTGAAAGGCGCGAGA 59.684 50.000 12.10 0.00 0.00 4.04
6369 6545 0.320771 AACAGTGAAAGGCGCGAGAT 60.321 50.000 12.10 0.00 0.00 2.75
6370 6546 1.016130 ACAGTGAAAGGCGCGAGATG 61.016 55.000 12.10 0.00 0.00 2.90
6374 6592 1.398390 GTGAAAGGCGCGAGATGAAAT 59.602 47.619 12.10 0.00 0.00 2.17
6375 6593 2.607635 GTGAAAGGCGCGAGATGAAATA 59.392 45.455 12.10 0.00 0.00 1.40
6377 6595 1.871080 AAGGCGCGAGATGAAATAGG 58.129 50.000 12.10 0.00 0.00 2.57
6384 6602 2.483714 GCGAGATGAAATAGGTGGCAGA 60.484 50.000 0.00 0.00 0.00 4.26
6424 6642 3.627395 TGAAACCGACTGATAGCCATT 57.373 42.857 0.00 0.00 0.00 3.16
6430 6648 3.879295 ACCGACTGATAGCCATTTTGATG 59.121 43.478 0.00 0.00 0.00 3.07
6435 6653 4.885907 ACTGATAGCCATTTTGATGACCTG 59.114 41.667 0.00 0.00 0.00 4.00
6436 6654 4.858850 TGATAGCCATTTTGATGACCTGT 58.141 39.130 0.00 0.00 0.00 4.00
6437 6655 4.641541 TGATAGCCATTTTGATGACCTGTG 59.358 41.667 0.00 0.00 0.00 3.66
6438 6656 2.880443 AGCCATTTTGATGACCTGTGT 58.120 42.857 0.00 0.00 0.00 3.72
6439 6657 2.559668 AGCCATTTTGATGACCTGTGTG 59.440 45.455 0.00 0.00 0.00 3.82
6445 6663 3.737032 TTGATGACCTGTGTGACGTTA 57.263 42.857 0.00 0.00 0.00 3.18
6448 6666 0.032952 TGACCTGTGTGACGTTAGGC 59.967 55.000 0.00 0.00 33.57 3.93
6455 6673 1.802365 GTGTGACGTTAGGCGGAAAAT 59.198 47.619 0.00 0.00 46.52 1.82
6459 6677 1.395954 GACGTTAGGCGGAAAATGACC 59.604 52.381 0.00 0.00 46.52 4.02
6465 6683 0.732538 GGCGGAAAATGACCAAAGCG 60.733 55.000 0.00 0.00 0.00 4.68
6473 6691 2.254546 ATGACCAAAGCGTCTCAACA 57.745 45.000 0.00 0.00 33.70 3.33
6479 6697 2.159448 CCAAAGCGTCTCAACAACACAA 60.159 45.455 0.00 0.00 0.00 3.33
6484 6702 6.795098 AAGCGTCTCAACAACACAAATATA 57.205 33.333 0.00 0.00 0.00 0.86
6515 6747 4.768968 AGAAAATCACCATGACTTTGAGGG 59.231 41.667 0.00 0.00 24.75 4.30
6522 6754 3.334881 ACCATGACTTTGAGGGAAGGAAT 59.665 43.478 0.00 0.00 0.00 3.01
6523 6755 4.202716 ACCATGACTTTGAGGGAAGGAATT 60.203 41.667 0.00 0.00 0.00 2.17
6525 6757 5.951747 CCATGACTTTGAGGGAAGGAATTAA 59.048 40.000 0.00 0.00 0.00 1.40
6532 6764 7.563556 ACTTTGAGGGAAGGAATTAAAACAAGA 59.436 33.333 0.00 0.00 0.00 3.02
6535 6767 6.493458 TGAGGGAAGGAATTAAAACAAGAAGG 59.507 38.462 0.00 0.00 0.00 3.46
6536 6768 5.246203 AGGGAAGGAATTAAAACAAGAAGGC 59.754 40.000 0.00 0.00 0.00 4.35
6538 6770 5.048294 GGAAGGAATTAAAACAAGAAGGCGA 60.048 40.000 0.00 0.00 0.00 5.54
6600 6833 7.507277 AGGCTAAATATAGATCACACTGACAGA 59.493 37.037 10.08 0.00 0.00 3.41
6602 6835 8.138074 GCTAAATATAGATCACACTGACAGACA 58.862 37.037 10.08 0.00 0.00 3.41
6606 6839 9.896645 AATATAGATCACACTGACAGACAATTT 57.103 29.630 10.08 0.00 0.00 1.82
6614 6847 6.197655 CACACTGACAGACAATTTTTCACATG 59.802 38.462 10.08 0.00 0.00 3.21
6615 6848 5.174398 CACTGACAGACAATTTTTCACATGC 59.826 40.000 10.08 0.00 0.00 4.06
6617 6850 5.845103 TGACAGACAATTTTTCACATGCAT 58.155 33.333 0.00 0.00 0.00 3.96
6618 6851 5.921976 TGACAGACAATTTTTCACATGCATC 59.078 36.000 0.00 0.00 0.00 3.91
6619 6852 5.845103 ACAGACAATTTTTCACATGCATCA 58.155 33.333 0.00 0.00 0.00 3.07
6620 6853 6.282167 ACAGACAATTTTTCACATGCATCAA 58.718 32.000 0.00 0.00 0.00 2.57
6621 6854 6.762187 ACAGACAATTTTTCACATGCATCAAA 59.238 30.769 0.00 0.00 0.00 2.69
6622 6855 7.280428 ACAGACAATTTTTCACATGCATCAAAA 59.720 29.630 0.00 0.00 0.00 2.44
6623 6856 7.796660 CAGACAATTTTTCACATGCATCAAAAG 59.203 33.333 0.00 0.00 0.00 2.27
6626 6859 5.660629 TTTTTCACATGCATCAAAAGCTG 57.339 34.783 0.00 0.00 0.00 4.24
6627 6860 2.357327 TCACATGCATCAAAAGCTGC 57.643 45.000 0.00 0.00 38.87 5.25
6628 6861 1.067425 TCACATGCATCAAAAGCTGCC 60.067 47.619 0.00 0.00 37.59 4.85
6629 6862 1.067142 CACATGCATCAAAAGCTGCCT 60.067 47.619 0.00 0.00 37.59 4.75
6630 6863 1.203994 ACATGCATCAAAAGCTGCCTC 59.796 47.619 0.00 0.00 37.59 4.70
6747 6983 0.039180 TAGTGGACTGGAGCGAAGGA 59.961 55.000 0.00 0.00 0.00 3.36
6748 6984 0.832135 AGTGGACTGGAGCGAAGGAA 60.832 55.000 0.00 0.00 0.00 3.36
6749 6985 0.670854 GTGGACTGGAGCGAAGGAAC 60.671 60.000 0.00 0.00 0.00 3.62
6756 6992 1.627550 GGAGCGAAGGAACGAAGCAC 61.628 60.000 0.00 0.00 35.09 4.40
6759 6995 1.495584 GCGAAGGAACGAAGCACACA 61.496 55.000 0.00 0.00 35.09 3.72
6760 6996 1.148310 CGAAGGAACGAAGCACACAT 58.852 50.000 0.00 0.00 35.09 3.21
6762 6998 1.126846 GAAGGAACGAAGCACACATCG 59.873 52.381 0.00 0.00 42.48 3.84
6765 7001 0.949105 GAACGAAGCACACATCGGGT 60.949 55.000 0.00 0.00 41.15 5.28
6917 7153 2.597903 GCTGGAACCCTCCCATCC 59.402 66.667 0.00 0.00 41.64 3.51
6935 7171 4.342092 CCATCCCTTCTCTCTTCTCTTCTC 59.658 50.000 0.00 0.00 0.00 2.87
6936 7172 4.946160 TCCCTTCTCTCTTCTCTTCTCT 57.054 45.455 0.00 0.00 0.00 3.10
6937 7173 5.269554 TCCCTTCTCTCTTCTCTTCTCTT 57.730 43.478 0.00 0.00 0.00 2.85
6938 7174 5.261216 TCCCTTCTCTCTTCTCTTCTCTTC 58.739 45.833 0.00 0.00 0.00 2.87
6939 7175 5.015178 TCCCTTCTCTCTTCTCTTCTCTTCT 59.985 44.000 0.00 0.00 0.00 2.85
6940 7176 5.716703 CCCTTCTCTCTTCTCTTCTCTTCTT 59.283 44.000 0.00 0.00 0.00 2.52
6941 7177 6.350445 CCCTTCTCTCTTCTCTTCTCTTCTTG 60.350 46.154 0.00 0.00 0.00 3.02
6942 7178 6.350445 CCTTCTCTCTTCTCTTCTCTTCTTGG 60.350 46.154 0.00 0.00 0.00 3.61
6943 7179 5.640147 TCTCTCTTCTCTTCTCTTCTTGGT 58.360 41.667 0.00 0.00 0.00 3.67
6944 7180 5.710099 TCTCTCTTCTCTTCTCTTCTTGGTC 59.290 44.000 0.00 0.00 0.00 4.02
6945 7181 4.457603 TCTCTTCTCTTCTCTTCTTGGTCG 59.542 45.833 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.049799 TGATTTACCTTTTCTCCTTGTTTGG 57.950 36.000 0.00 0.00 0.00 3.28
81 82 7.365741 ACATTGAGCATGAAGTAAGTTTCAAG 58.634 34.615 0.00 0.00 40.21 3.02
232 233 2.224402 GGTCCTGATAGATTGTGGGAGC 60.224 54.545 0.00 0.00 34.91 4.70
272 273 1.901650 GAGCGCAACAGGAACCGAAG 61.902 60.000 11.47 0.00 0.00 3.79
306 307 2.490115 AGACGGTAGAACTCTGCTCTTG 59.510 50.000 0.00 0.00 0.00 3.02
344 345 3.122323 TCGCCCAAATCGCCGTTC 61.122 61.111 0.00 0.00 0.00 3.95
417 418 8.184192 ACGATCCATTGTGTTGATTTTATTCTC 58.816 33.333 0.00 0.00 0.00 2.87
494 495 1.067749 CTGCGCCATCTCTCCTCTG 59.932 63.158 4.18 0.00 0.00 3.35
514 515 0.110688 CAAACATGACACCTCGCACG 60.111 55.000 0.00 0.00 0.00 5.34
705 706 2.507110 TTAGCTCGCTGGTGCAGGAC 62.507 60.000 0.85 0.00 39.64 3.85
706 707 1.617018 ATTAGCTCGCTGGTGCAGGA 61.617 55.000 0.85 0.00 39.64 3.86
715 716 4.737855 TTTCTCACCTTATTAGCTCGCT 57.262 40.909 0.00 0.00 0.00 4.93
821 822 1.003718 GACCAAACCTCCCACCTCG 60.004 63.158 0.00 0.00 0.00 4.63
822 823 1.003718 CGACCAAACCTCCCACCTC 60.004 63.158 0.00 0.00 0.00 3.85
823 824 1.057851 TTCGACCAAACCTCCCACCT 61.058 55.000 0.00 0.00 0.00 4.00
824 825 0.605589 CTTCGACCAAACCTCCCACC 60.606 60.000 0.00 0.00 0.00 4.61
825 826 0.605589 CCTTCGACCAAACCTCCCAC 60.606 60.000 0.00 0.00 0.00 4.61
826 827 0.765135 TCCTTCGACCAAACCTCCCA 60.765 55.000 0.00 0.00 0.00 4.37
827 828 0.036294 CTCCTTCGACCAAACCTCCC 60.036 60.000 0.00 0.00 0.00 4.30
850 865 4.379243 CGCGCCCCTGTCTGTCTT 62.379 66.667 0.00 0.00 0.00 3.01
873 891 3.698040 TGTACACGTATTCCTTCCTCCTC 59.302 47.826 0.00 0.00 0.00 3.71
874 892 3.700038 CTGTACACGTATTCCTTCCTCCT 59.300 47.826 0.00 0.00 0.00 3.69
876 894 3.698040 TCCTGTACACGTATTCCTTCCTC 59.302 47.826 0.00 0.00 0.00 3.71
877 895 3.700038 CTCCTGTACACGTATTCCTTCCT 59.300 47.826 0.00 0.00 0.00 3.36
878 896 3.181478 CCTCCTGTACACGTATTCCTTCC 60.181 52.174 0.00 0.00 0.00 3.46
879 897 3.698040 TCCTCCTGTACACGTATTCCTTC 59.302 47.826 0.00 0.00 0.00 3.46
880 898 3.700038 CTCCTCCTGTACACGTATTCCTT 59.300 47.826 0.00 0.00 0.00 3.36
940 958 1.603739 GGTTTCCACAGGCCCAGTC 60.604 63.158 0.00 0.00 0.00 3.51
949 967 0.847373 TAGCCTGGTTGGTTTCCACA 59.153 50.000 0.00 0.00 38.35 4.17
950 968 2.092323 GATAGCCTGGTTGGTTTCCAC 58.908 52.381 0.00 0.00 38.35 4.02
951 969 1.992557 AGATAGCCTGGTTGGTTTCCA 59.007 47.619 0.00 0.00 38.35 3.53
953 971 2.280628 CGAGATAGCCTGGTTGGTTTC 58.719 52.381 0.00 0.00 38.35 2.78
954 972 1.628846 ACGAGATAGCCTGGTTGGTTT 59.371 47.619 0.00 0.00 38.35 3.27
955 973 1.276622 ACGAGATAGCCTGGTTGGTT 58.723 50.000 0.00 0.00 38.35 3.67
957 975 1.482593 AGAACGAGATAGCCTGGTTGG 59.517 52.381 0.00 0.00 42.68 3.77
958 976 2.166459 TGAGAACGAGATAGCCTGGTTG 59.834 50.000 0.00 0.00 42.68 3.77
1446 1479 1.076632 TTCGCCTCTCCTCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
1447 1480 1.076339 CTTCGCCTCTCCTCCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
1584 1617 5.339861 CCAAATCCTTCTTCTCATCCTTCCT 60.340 44.000 0.00 0.00 0.00 3.36
1664 1697 3.713248 AGCAAGATCCTCACCACATATCA 59.287 43.478 0.00 0.00 0.00 2.15
1767 1803 7.512130 TGCAAATCTACCAGACAGATATGAAT 58.488 34.615 0.00 0.00 32.40 2.57
1769 1805 6.484364 TGCAAATCTACCAGACAGATATGA 57.516 37.500 0.00 0.00 32.40 2.15
1770 1806 6.932960 TCATGCAAATCTACCAGACAGATATG 59.067 38.462 0.00 0.00 32.40 1.78
1771 1807 7.071069 TCATGCAAATCTACCAGACAGATAT 57.929 36.000 0.00 0.00 32.40 1.63
1773 1809 5.363562 TCATGCAAATCTACCAGACAGAT 57.636 39.130 0.00 0.00 34.15 2.90
1787 1823 6.318648 CCTTAACTAACATAGCCTCATGCAAA 59.681 38.462 0.00 0.00 44.83 3.68
1818 1854 3.883180 ACCGCAACACAACGCACC 61.883 61.111 0.00 0.00 0.00 5.01
1822 1858 2.024022 CACCACCGCAACACAACG 59.976 61.111 0.00 0.00 0.00 4.10
1825 1861 3.208383 CAGCACCACCGCAACACA 61.208 61.111 0.00 0.00 0.00 3.72
1831 1867 4.332637 CAAGCACAGCACCACCGC 62.333 66.667 0.00 0.00 0.00 5.68
1867 1910 3.243643 GGCTGCGACATAATGCAAAAATC 59.756 43.478 0.00 0.00 41.22 2.17
1868 1911 3.119029 AGGCTGCGACATAATGCAAAAAT 60.119 39.130 0.00 0.00 41.22 1.82
1932 1975 3.550820 TGTTTCTAGTTTGCAGGCTCAA 58.449 40.909 0.00 0.00 0.00 3.02
1972 2015 3.129988 CCATCAGCAGTTTCAGGGATTTC 59.870 47.826 0.00 0.00 0.00 2.17
1998 2041 1.871418 CCCTGGAGAAGATCAGTCCA 58.129 55.000 9.61 9.61 38.07 4.02
2107 2156 5.783111 TGCAATATATCAGCGTGTATGAGT 58.217 37.500 5.85 0.00 0.00 3.41
2269 2318 9.868277 GCTCTGTTATTGTGATTCTATATAGCT 57.132 33.333 4.75 0.00 0.00 3.32
2278 2327 7.809331 TGTCATTTTGCTCTGTTATTGTGATTC 59.191 33.333 0.00 0.00 0.00 2.52
2284 2333 9.844790 TTTATCTGTCATTTTGCTCTGTTATTG 57.155 29.630 0.00 0.00 0.00 1.90
2290 2339 7.759465 AGTGATTTATCTGTCATTTTGCTCTG 58.241 34.615 0.00 0.00 0.00 3.35
2291 2340 7.934855 AGTGATTTATCTGTCATTTTGCTCT 57.065 32.000 0.00 0.00 0.00 4.09
2328 2377 2.287909 GCTACGGCTTAGAGAGGATGTG 60.288 54.545 1.67 0.00 35.22 3.21
2329 2378 1.957877 GCTACGGCTTAGAGAGGATGT 59.042 52.381 1.67 0.00 35.22 3.06
2330 2379 2.715737 GCTACGGCTTAGAGAGGATG 57.284 55.000 1.67 0.00 35.22 3.51
2358 2407 0.987294 TCCAGGAAGCTTGGAGAAGG 59.013 55.000 2.10 0.00 39.74 3.46
2383 2432 1.590932 CTGATGCATGCTACCTGGTC 58.409 55.000 20.33 6.20 0.00 4.02
2412 2461 6.381801 TCATCTTTTGCTCGATTCTTTTTCC 58.618 36.000 0.00 0.00 0.00 3.13
2424 2474 1.442769 TCCGTGCTCATCTTTTGCTC 58.557 50.000 0.00 0.00 0.00 4.26
2456 2506 2.635427 GGTAGGGCTCTCCAATAAGAGG 59.365 54.545 0.00 0.00 42.58 3.69
2477 2527 2.225727 GACGCCTTAAAAACAGAGGGTG 59.774 50.000 0.00 0.00 0.00 4.61
2478 2528 2.501261 GACGCCTTAAAAACAGAGGGT 58.499 47.619 0.00 0.00 0.00 4.34
2479 2529 1.810755 GGACGCCTTAAAAACAGAGGG 59.189 52.381 0.00 0.00 0.00 4.30
2480 2530 1.810755 GGGACGCCTTAAAAACAGAGG 59.189 52.381 0.00 0.00 0.00 3.69
2497 2547 2.998480 TAAGCGTCCAAGGCGGGA 60.998 61.111 0.00 0.00 33.62 5.14
2498 2548 2.511600 CTAAGCGTCCAAGGCGGG 60.512 66.667 5.39 0.00 33.62 6.13
2499 2549 2.511600 CCTAAGCGTCCAAGGCGG 60.512 66.667 5.39 0.00 33.62 6.13
2500 2550 3.195698 GCCTAAGCGTCCAAGGCG 61.196 66.667 0.00 0.00 45.82 5.52
2510 2560 2.238437 GCCTAAGCGTCGCCTAAGC 61.238 63.158 14.86 7.18 0.00 3.09
2511 2561 4.014065 GCCTAAGCGTCGCCTAAG 57.986 61.111 14.86 8.78 0.00 2.18
2540 2590 1.092921 TATTTGTAAGGCGCTGGCGG 61.093 55.000 16.61 0.00 41.24 6.13
2541 2591 0.944386 ATATTTGTAAGGCGCTGGCG 59.056 50.000 7.64 10.80 41.24 5.69
2542 2592 1.600413 GCATATTTGTAAGGCGCTGGC 60.600 52.381 7.64 0.00 38.90 4.85
2543 2593 1.001378 GGCATATTTGTAAGGCGCTGG 60.001 52.381 7.64 0.00 0.00 4.85
2544 2594 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
2545 2595 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
2546 2596 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
2547 2597 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
2548 2598 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
2549 2599 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
2550 2600 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
2551 2601 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
2552 2602 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
2553 2603 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
2625 2675 2.427753 GATCTAAGGCGCTGGGGG 59.572 66.667 7.64 0.00 0.00 5.40
2626 2676 2.029666 CGATCTAAGGCGCTGGGG 59.970 66.667 7.64 0.00 0.00 4.96
2632 2682 0.663568 CGGTAAGGCGATCTAAGGCG 60.664 60.000 0.00 0.00 39.33 5.52
2633 2683 0.944788 GCGGTAAGGCGATCTAAGGC 60.945 60.000 0.00 0.00 0.00 4.35
2634 2684 0.319641 GGCGGTAAGGCGATCTAAGG 60.320 60.000 0.00 0.00 35.04 2.69
2635 2685 3.196613 GGCGGTAAGGCGATCTAAG 57.803 57.895 0.00 0.00 35.04 2.18
2644 2694 4.638865 AGCTATGTTTTTAAGGCGGTAAGG 59.361 41.667 0.00 0.00 0.00 2.69
2645 2695 5.813080 AGCTATGTTTTTAAGGCGGTAAG 57.187 39.130 0.00 0.00 0.00 2.34
2646 2696 5.585844 GGTAGCTATGTTTTTAAGGCGGTAA 59.414 40.000 0.00 0.00 0.00 2.85
2647 2697 5.118286 GGTAGCTATGTTTTTAAGGCGGTA 58.882 41.667 0.00 0.00 0.00 4.02
2648 2698 3.943381 GGTAGCTATGTTTTTAAGGCGGT 59.057 43.478 0.00 0.00 0.00 5.68
2649 2699 3.942748 TGGTAGCTATGTTTTTAAGGCGG 59.057 43.478 0.00 0.00 0.00 6.13
2650 2700 4.201881 GGTGGTAGCTATGTTTTTAAGGCG 60.202 45.833 0.00 0.00 0.00 5.52
2651 2701 4.948004 AGGTGGTAGCTATGTTTTTAAGGC 59.052 41.667 0.00 0.00 0.00 4.35
2652 2702 6.415573 AGAGGTGGTAGCTATGTTTTTAAGG 58.584 40.000 0.00 0.00 0.00 2.69
2653 2703 9.046296 CATAGAGGTGGTAGCTATGTTTTTAAG 57.954 37.037 0.00 0.00 37.67 1.85
2654 2704 8.958119 CATAGAGGTGGTAGCTATGTTTTTAA 57.042 34.615 0.00 0.00 37.67 1.52
2661 2711 5.384063 CTCACATAGAGGTGGTAGCTATG 57.616 47.826 0.00 0.00 44.31 2.23
2691 2741 2.815308 CGGCCTCATCGCTAGGTT 59.185 61.111 0.00 0.00 36.43 3.50
2750 2800 1.300931 CACCCATCGCCACTATCCG 60.301 63.158 0.00 0.00 0.00 4.18
2754 2804 0.613572 TCACTCACCCATCGCCACTA 60.614 55.000 0.00 0.00 0.00 2.74
2756 2806 1.741770 GTCACTCACCCATCGCCAC 60.742 63.158 0.00 0.00 0.00 5.01
2772 2822 7.506328 TTCTTTTAAGGCAAAGACTTAGGTC 57.494 36.000 0.00 0.00 41.52 3.85
2786 2836 9.200817 TGGAATTCCAGGATTATTCTTTTAAGG 57.799 33.333 23.63 0.00 42.01 2.69
2812 2862 5.250313 ACTTCTCCAAATCCAGAAGACAGAT 59.750 40.000 14.17 0.00 45.93 2.90
2848 2898 7.448420 CCACCATATCATAAGATCTGTGTTCT 58.552 38.462 0.00 0.00 35.67 3.01
2850 2900 6.329986 TCCCACCATATCATAAGATCTGTGTT 59.670 38.462 0.00 0.00 35.67 3.32
2853 2903 7.460402 AGATTCCCACCATATCATAAGATCTGT 59.540 37.037 0.00 0.00 35.67 3.41
2856 2906 7.628234 ACAGATTCCCACCATATCATAAGATC 58.372 38.462 0.00 0.00 35.67 2.75
2907 2957 6.073447 TCCAACTTTGAGGCATTAGGATAA 57.927 37.500 0.00 0.00 0.00 1.75
2921 2971 7.859377 GCTCACACATATCAATATCCAACTTTG 59.141 37.037 0.00 0.00 0.00 2.77
2933 2983 3.004862 CACTGCTGCTCACACATATCAA 58.995 45.455 0.00 0.00 0.00 2.57
3198 3248 0.674581 CTTCTGACTCGCATTGGCCA 60.675 55.000 0.00 0.00 36.38 5.36
3245 3295 9.512435 GGATTCATCACTTAAATTTGATGTCAG 57.488 33.333 14.51 0.00 46.26 3.51
3273 3326 0.311165 AACTCACGGTCTCAGTCACG 59.689 55.000 0.00 0.00 0.00 4.35
3286 3339 7.724305 TTGGTTGTCTACATTCTAAACTCAC 57.276 36.000 0.00 0.00 0.00 3.51
3346 3400 5.499313 TGCATGGTTCAACTCATGAGAATA 58.501 37.500 29.27 10.32 42.25 1.75
3360 3414 8.507249 GTTCCTACAGAATATATTGCATGGTTC 58.493 37.037 1.78 0.00 36.69 3.62
3374 3428 2.301870 TGGACGCTTGTTCCTACAGAAT 59.698 45.455 0.00 0.00 36.69 2.40
3392 3446 1.296392 CCATGCGGTGAACTCTGGA 59.704 57.895 0.00 0.00 0.00 3.86
3458 3512 9.388506 AGTTATCCATGTTTCTATGAAAGACAG 57.611 33.333 0.00 0.00 32.51 3.51
3521 3578 3.057596 ACCATGTAAAACAGTGGCATTCG 60.058 43.478 0.00 0.00 33.19 3.34
3523 3580 3.554752 GCACCATGTAAAACAGTGGCATT 60.555 43.478 0.00 0.00 33.19 3.56
3585 3642 4.957296 TGAAAGAACACTAGTCCTGGTTC 58.043 43.478 13.34 13.34 39.83 3.62
3589 3646 6.383415 GTCTACTGAAAGAACACTAGTCCTG 58.617 44.000 0.00 0.00 37.43 3.86
3610 3667 8.635765 TTTGCTGAAGACAATAAATAAGGTCT 57.364 30.769 0.00 0.00 42.08 3.85
3613 3670 9.696917 ACTTTTTGCTGAAGACAATAAATAAGG 57.303 29.630 2.14 0.00 0.00 2.69
3647 3704 3.120199 CCAATGAGCAACTAACTTCACGG 60.120 47.826 0.00 0.00 0.00 4.94
3657 3714 0.396435 TCACCGACCAATGAGCAACT 59.604 50.000 0.00 0.00 0.00 3.16
3665 3722 1.142060 TCCAAACACTCACCGACCAAT 59.858 47.619 0.00 0.00 0.00 3.16
3696 3753 5.768164 AGGGAGAACAAATATCGTGTTTTGT 59.232 36.000 6.27 6.55 45.39 2.83
3705 3779 8.246871 CCAAAAGAAAGAGGGAGAACAAATATC 58.753 37.037 0.00 0.00 0.00 1.63
3731 3807 7.826690 TGAAAGAAACTCTAAATTGGGCATAC 58.173 34.615 0.00 0.00 0.00 2.39
3754 3830 4.334552 TCCAATAGAGCAGCACAATTTGA 58.665 39.130 2.79 0.00 0.00 2.69
3758 3834 4.434545 AGATCCAATAGAGCAGCACAAT 57.565 40.909 0.00 0.00 31.44 2.71
3763 3839 6.264067 ACCAAAATAAGATCCAATAGAGCAGC 59.736 38.462 0.00 0.00 31.44 5.25
3768 3844 9.077885 GGCATAACCAAAATAAGATCCAATAGA 57.922 33.333 0.00 0.00 38.86 1.98
3791 3867 7.554118 CAGAACTAGAATAAGAGAAATTGGGCA 59.446 37.037 0.00 0.00 0.00 5.36
3820 3896 7.725844 TCTGCTCTATATGACCTGATAAGTGAA 59.274 37.037 0.00 0.00 0.00 3.18
3916 3992 5.891451 AGCAAGAAAAACACTAAACAGGAC 58.109 37.500 0.00 0.00 0.00 3.85
3919 3995 9.683069 ATCATAAGCAAGAAAAACACTAAACAG 57.317 29.630 0.00 0.00 0.00 3.16
3962 4038 3.258372 TGTGGGCGCATTACCAAAATTTA 59.742 39.130 10.83 0.00 38.73 1.40
3964 4040 1.620819 TGTGGGCGCATTACCAAAATT 59.379 42.857 10.83 0.00 38.73 1.82
3965 4041 1.204467 CTGTGGGCGCATTACCAAAAT 59.796 47.619 10.83 0.00 38.73 1.82
4106 4184 9.448438 TGCACATAAAGATGTATGTTAAACTCT 57.552 29.630 0.00 0.00 44.82 3.24
4316 4396 6.426633 CCGCATTCTTTAAACCATTCCTTTTT 59.573 34.615 0.00 0.00 0.00 1.94
4382 4462 0.459585 GCATGTCCACATACCGTCGT 60.460 55.000 0.00 0.00 34.26 4.34
4496 4577 6.057533 AGGCCGGTTAATAGTTTATTACCAC 58.942 40.000 1.90 0.00 30.81 4.16
4502 4583 6.938596 GGAACATAGGCCGGTTAATAGTTTAT 59.061 38.462 1.90 0.00 0.00 1.40
4504 4585 5.128205 GGAACATAGGCCGGTTAATAGTTT 58.872 41.667 1.90 0.00 0.00 2.66
4517 4598 2.614057 CCGAAATGAGTGGAACATAGGC 59.386 50.000 0.00 0.00 44.52 3.93
4536 4617 3.056304 ACAAAAACAATTCGATTGCCCG 58.944 40.909 7.28 0.00 43.98 6.13
4540 4621 6.761731 TTGGCTACAAAAACAATTCGATTG 57.238 33.333 6.18 6.18 38.76 2.67
4544 4625 7.867445 AGTAATTGGCTACAAAAACAATTCG 57.133 32.000 4.93 0.00 41.21 3.34
4549 4630 8.293867 GTGACATAGTAATTGGCTACAAAAACA 58.706 33.333 0.00 0.00 40.55 2.83
4559 4684 6.258068 GGAGTTACTGTGACATAGTAATTGGC 59.742 42.308 22.73 12.83 41.23 4.52
4806 4934 5.254339 AGGAGCAGAAAAGAAAAACTGTG 57.746 39.130 0.00 0.00 33.57 3.66
4807 4935 7.255625 GGAATAGGAGCAGAAAAGAAAAACTGT 60.256 37.037 0.00 0.00 33.57 3.55
4816 4944 4.140536 GGATGGGAATAGGAGCAGAAAAG 58.859 47.826 0.00 0.00 0.00 2.27
4833 4961 5.620738 TCAGAGGATAAACTGAAGGATGG 57.379 43.478 0.00 0.00 39.68 3.51
4862 4990 7.975616 TGCCAATGAGCATTCTAAAAATAACTC 59.024 33.333 0.00 0.00 38.00 3.01
4864 4992 7.761249 ACTGCCAATGAGCATTCTAAAAATAAC 59.239 33.333 0.00 0.00 43.09 1.89
4872 5000 3.054875 AGACACTGCCAATGAGCATTCTA 60.055 43.478 0.00 0.00 43.09 2.10
4895 5023 9.653287 TTTAGTGTAGATATTGGACAGAACAAG 57.347 33.333 0.00 0.00 0.00 3.16
4937 5065 1.535028 CTGCACGGTCAAACTTATGCA 59.465 47.619 0.00 0.00 40.57 3.96
4943 5071 1.893808 CAGCCTGCACGGTCAAACT 60.894 57.895 4.45 0.00 34.25 2.66
4978 5111 9.935682 ATACATGAAAGAAATTGTATGCTAACG 57.064 29.630 0.00 0.00 34.78 3.18
4991 5124 6.931838 ACACGTCTAGGATACATGAAAGAAA 58.068 36.000 0.00 0.00 41.41 2.52
5011 5144 6.421377 TTCATTCATGGATGACTTAACACG 57.579 37.500 16.65 0.00 35.86 4.49
5017 5151 3.758023 TGCGTTTCATTCATGGATGACTT 59.242 39.130 16.65 0.00 35.86 3.01
5022 5156 3.507233 ACAACTGCGTTTCATTCATGGAT 59.493 39.130 0.00 0.00 0.00 3.41
5038 5172 4.451900 ACCCAAGACAGAACTTACAACTG 58.548 43.478 0.00 0.00 37.62 3.16
5045 5179 5.601313 TGAGTTAGTACCCAAGACAGAACTT 59.399 40.000 0.00 0.00 30.03 2.66
5047 5181 5.010820 AGTGAGTTAGTACCCAAGACAGAAC 59.989 44.000 0.00 0.00 0.00 3.01
5060 5194 3.570975 TCAAGCAACCGAGTGAGTTAGTA 59.429 43.478 0.00 0.00 0.00 1.82
5061 5195 2.364324 TCAAGCAACCGAGTGAGTTAGT 59.636 45.455 0.00 0.00 0.00 2.24
5063 5197 3.325870 CATCAAGCAACCGAGTGAGTTA 58.674 45.455 0.00 0.00 0.00 2.24
5064 5198 2.146342 CATCAAGCAACCGAGTGAGTT 58.854 47.619 0.00 0.00 0.00 3.01
5139 5275 3.624777 CTCATAGGTTCAAGCCCACAAT 58.375 45.455 0.00 0.00 0.00 2.71
5174 5310 0.250901 ACATGGCAGTGGTTGAGGAC 60.251 55.000 0.00 0.00 0.00 3.85
5175 5311 0.250858 CACATGGCAGTGGTTGAGGA 60.251 55.000 0.00 0.00 35.88 3.71
5176 5312 1.870055 GCACATGGCAGTGGTTGAGG 61.870 60.000 15.54 0.09 43.97 3.86
5177 5313 1.582968 GCACATGGCAGTGGTTGAG 59.417 57.895 15.54 0.00 43.97 3.02
5178 5314 3.762293 GCACATGGCAGTGGTTGA 58.238 55.556 15.54 0.00 43.97 3.18
5200 5336 7.979537 GGACGATGCACCTATATAACATAATGA 59.020 37.037 0.00 0.00 0.00 2.57
5269 5408 5.298527 AGGTAAACCTTACAAAGCAACACTC 59.701 40.000 0.00 0.00 46.09 3.51
5307 5447 7.279981 GTCATATGTTCAATAGCACACCTAACA 59.720 37.037 1.90 0.00 0.00 2.41
5308 5448 7.495934 AGTCATATGTTCAATAGCACACCTAAC 59.504 37.037 1.90 0.00 0.00 2.34
5310 5450 6.986231 CAGTCATATGTTCAATAGCACACCTA 59.014 38.462 1.90 0.00 0.00 3.08
5311 5451 5.819379 CAGTCATATGTTCAATAGCACACCT 59.181 40.000 1.90 0.00 0.00 4.00
5313 5453 5.065090 TGCAGTCATATGTTCAATAGCACAC 59.935 40.000 1.90 0.00 0.00 3.82
5314 5454 5.184711 TGCAGTCATATGTTCAATAGCACA 58.815 37.500 1.90 0.00 0.00 4.57
5315 5455 5.739752 TGCAGTCATATGTTCAATAGCAC 57.260 39.130 1.90 0.00 0.00 4.40
5394 5535 7.886629 ATGTTTGGTGTCTGCATAATAATCT 57.113 32.000 0.00 0.00 0.00 2.40
5422 5563 8.472007 AAAAGTGACTTTCATGTAAACCCATA 57.528 30.769 11.44 0.00 31.99 2.74
5477 5618 5.649395 CCTGATATGAGGAGCAAAACAAGAA 59.351 40.000 1.22 0.00 34.69 2.52
5492 5633 2.629617 TCATCGCTTGAGCCTGATATGA 59.370 45.455 0.00 0.00 37.91 2.15
5496 5637 1.950828 CTTCATCGCTTGAGCCTGAT 58.049 50.000 0.00 0.00 35.27 2.90
5589 5730 7.754851 TCCAACTGAAATTTTAGTAAGGGTC 57.245 36.000 23.07 0.00 0.00 4.46
5598 5739 7.117523 CGCATTTTCCATCCAACTGAAATTTTA 59.882 33.333 0.00 0.00 0.00 1.52
5611 5752 2.017049 AGTAGTGCGCATTTTCCATCC 58.983 47.619 15.91 0.00 0.00 3.51
5621 5762 1.368641 CTTGGCATAAGTAGTGCGCA 58.631 50.000 5.66 5.66 43.40 6.09
5624 5765 4.440839 AAAAGCTTGGCATAAGTAGTGC 57.559 40.909 0.00 0.00 41.78 4.40
5649 5794 2.045926 AGCTGCGGCCTGGTAAAG 60.046 61.111 15.55 0.00 39.73 1.85
5728 5873 7.820648 TGAGAAATAACTTCTGAGAAAATGGC 58.179 34.615 0.00 0.00 44.82 4.40
5815 5960 0.390735 CAGCATTTTCCAAGCCAGCC 60.391 55.000 0.00 0.00 0.00 4.85
5912 6057 6.602179 TCGAAAAATCTTACAGCTCAATGTG 58.398 36.000 0.00 0.00 34.56 3.21
5939 6084 7.859325 TGCCTATGGAACTGTAATAGAAAAC 57.141 36.000 6.64 0.00 0.00 2.43
5951 6096 4.411540 AGACAATGAGATGCCTATGGAACT 59.588 41.667 0.00 0.00 0.00 3.01
5981 6126 7.558807 ACAATGAGATGCCTATGAATTCAGAAA 59.441 33.333 14.54 1.28 0.00 2.52
5984 6129 6.879276 ACAATGAGATGCCTATGAATTCAG 57.121 37.500 14.54 1.48 0.00 3.02
6033 6193 1.339438 CCCCAACTCATGAGTCACTGG 60.339 57.143 27.74 27.74 41.58 4.00
6129 6305 1.873591 AGCACTAAAAGCCAACAGTCG 59.126 47.619 0.00 0.00 0.00 4.18
6134 6310 0.387239 CCGCAGCACTAAAAGCCAAC 60.387 55.000 0.00 0.00 0.00 3.77
6228 6404 7.985184 ACTTCCTGTTTAATCTATTCACGCATA 59.015 33.333 0.00 0.00 0.00 3.14
6235 6411 9.922305 CGAATTCACTTCCTGTTTAATCTATTC 57.078 33.333 6.22 0.00 0.00 1.75
6242 6418 6.073222 GCTTCTCGAATTCACTTCCTGTTTAA 60.073 38.462 6.22 0.00 0.00 1.52
6256 6432 2.568623 AGGTGGTTGCTTCTCGAATT 57.431 45.000 0.00 0.00 0.00 2.17
6260 6436 1.593196 TGAAAGGTGGTTGCTTCTCG 58.407 50.000 0.00 0.00 0.00 4.04
6271 6447 8.442632 TTCTCTAATCAAGCATATGAAAGGTG 57.557 34.615 6.97 0.00 32.06 4.00
6272 6448 7.228308 GCTTCTCTAATCAAGCATATGAAAGGT 59.772 37.037 6.97 0.00 43.87 3.50
6273 6449 7.583230 GCTTCTCTAATCAAGCATATGAAAGG 58.417 38.462 6.97 0.00 43.87 3.11
6283 6459 4.692625 TCACTGTTGCTTCTCTAATCAAGC 59.307 41.667 0.00 0.00 44.55 4.01
6284 6460 5.931146 ACTCACTGTTGCTTCTCTAATCAAG 59.069 40.000 0.00 0.00 0.00 3.02
6285 6461 5.858381 ACTCACTGTTGCTTCTCTAATCAA 58.142 37.500 0.00 0.00 0.00 2.57
6286 6462 5.474578 ACTCACTGTTGCTTCTCTAATCA 57.525 39.130 0.00 0.00 0.00 2.57
6287 6463 6.648725 AGAAACTCACTGTTGCTTCTCTAATC 59.351 38.462 0.00 0.00 41.68 1.75
6288 6464 6.529220 AGAAACTCACTGTTGCTTCTCTAAT 58.471 36.000 0.00 0.00 41.68 1.73
6289 6465 5.918608 AGAAACTCACTGTTGCTTCTCTAA 58.081 37.500 0.00 0.00 41.68 2.10
6290 6466 5.537300 AGAAACTCACTGTTGCTTCTCTA 57.463 39.130 0.00 0.00 41.68 2.43
6291 6467 4.414337 AGAAACTCACTGTTGCTTCTCT 57.586 40.909 0.00 0.00 41.68 3.10
6292 6468 5.928839 TGATAGAAACTCACTGTTGCTTCTC 59.071 40.000 0.00 0.00 41.68 2.87
6293 6469 5.858381 TGATAGAAACTCACTGTTGCTTCT 58.142 37.500 0.00 0.00 41.68 2.85
6294 6470 6.369890 TGATGATAGAAACTCACTGTTGCTTC 59.630 38.462 0.00 0.00 41.68 3.86
6295 6471 6.233434 TGATGATAGAAACTCACTGTTGCTT 58.767 36.000 0.00 0.00 41.68 3.91
6326 6502 8.617809 GTTACACCATTTCTGAAACAAGACTAA 58.382 33.333 4.73 0.00 0.00 2.24
6327 6503 7.771361 TGTTACACCATTTCTGAAACAAGACTA 59.229 33.333 4.73 0.00 0.00 2.59
6335 6511 7.397892 TTTCACTGTTACACCATTTCTGAAA 57.602 32.000 5.15 5.15 0.00 2.69
6361 6537 0.861837 CCACCTATTTCATCTCGCGC 59.138 55.000 0.00 0.00 0.00 6.86
6365 6541 4.934602 GCTATCTGCCACCTATTTCATCTC 59.065 45.833 0.00 0.00 35.15 2.75
6366 6542 4.904241 GCTATCTGCCACCTATTTCATCT 58.096 43.478 0.00 0.00 35.15 2.90
6392 6610 5.878116 TCAGTCGGTTTCAAGAAGAGAAAAA 59.122 36.000 0.00 0.00 36.80 1.94
6397 6615 4.564769 GCTATCAGTCGGTTTCAAGAAGAG 59.435 45.833 0.00 0.00 0.00 2.85
6399 6617 3.619038 GGCTATCAGTCGGTTTCAAGAAG 59.381 47.826 0.00 0.00 0.00 2.85
6400 6618 3.007506 TGGCTATCAGTCGGTTTCAAGAA 59.992 43.478 0.00 0.00 0.00 2.52
6402 6620 2.972625 TGGCTATCAGTCGGTTTCAAG 58.027 47.619 0.00 0.00 0.00 3.02
6403 6621 3.627395 ATGGCTATCAGTCGGTTTCAA 57.373 42.857 0.00 0.00 0.00 2.69
6404 6622 3.627395 AATGGCTATCAGTCGGTTTCA 57.373 42.857 0.00 0.00 0.00 2.69
6410 6628 4.024556 GGTCATCAAAATGGCTATCAGTCG 60.025 45.833 0.00 0.00 37.65 4.18
6414 6632 4.641541 CACAGGTCATCAAAATGGCTATCA 59.358 41.667 0.00 0.00 37.65 2.15
6424 6642 2.613026 ACGTCACACAGGTCATCAAA 57.387 45.000 0.00 0.00 0.00 2.69
6430 6648 1.007336 CGCCTAACGTCACACAGGTC 61.007 60.000 0.00 0.00 36.87 3.85
6435 6653 1.219646 TTTTCCGCCTAACGTCACAC 58.780 50.000 0.00 0.00 41.42 3.82
6436 6654 1.801771 CATTTTCCGCCTAACGTCACA 59.198 47.619 0.00 0.00 41.42 3.58
6437 6655 2.070783 TCATTTTCCGCCTAACGTCAC 58.929 47.619 0.00 0.00 41.42 3.67
6438 6656 2.070783 GTCATTTTCCGCCTAACGTCA 58.929 47.619 0.00 0.00 41.42 4.35
6439 6657 1.395954 GGTCATTTTCCGCCTAACGTC 59.604 52.381 0.00 0.00 41.42 4.34
6445 6663 0.603065 GCTTTGGTCATTTTCCGCCT 59.397 50.000 0.00 0.00 0.00 5.52
6448 6666 1.535462 AGACGCTTTGGTCATTTTCCG 59.465 47.619 0.00 0.00 39.42 4.30
6455 6673 1.668751 GTTGTTGAGACGCTTTGGTCA 59.331 47.619 0.00 0.00 39.42 4.02
6459 6677 2.823196 TGTGTTGTTGAGACGCTTTG 57.177 45.000 0.00 0.00 0.00 2.77
6484 6702 9.471702 AAAGTCATGGTGATTTTCTGATAGATT 57.528 29.630 0.00 0.00 31.90 2.40
6497 6729 3.308688 CCTTCCCTCAAAGTCATGGTGAT 60.309 47.826 0.00 0.00 0.00 3.06
6502 6734 7.466746 TTTAATTCCTTCCCTCAAAGTCATG 57.533 36.000 0.00 0.00 0.00 3.07
6505 6737 7.284919 TGTTTTAATTCCTTCCCTCAAAGTC 57.715 36.000 0.00 0.00 0.00 3.01
6507 6739 7.951591 TCTTGTTTTAATTCCTTCCCTCAAAG 58.048 34.615 0.00 0.00 0.00 2.77
6508 6740 7.906199 TCTTGTTTTAATTCCTTCCCTCAAA 57.094 32.000 0.00 0.00 0.00 2.69
6515 6747 6.009115 TCGCCTTCTTGTTTTAATTCCTTC 57.991 37.500 0.00 0.00 0.00 3.46
6556 6788 9.920946 ATTTAGCCTTGTTTTATATCTCCTTGA 57.079 29.630 0.00 0.00 0.00 3.02
6569 6801 9.113838 CAGTGTGATCTATATTTAGCCTTGTTT 57.886 33.333 0.00 0.00 0.00 2.83
6572 6804 7.928167 TGTCAGTGTGATCTATATTTAGCCTTG 59.072 37.037 0.00 0.00 0.00 3.61
6586 6818 6.634436 GTGAAAAATTGTCTGTCAGTGTGATC 59.366 38.462 0.00 0.00 0.00 2.92
6587 6819 6.095300 TGTGAAAAATTGTCTGTCAGTGTGAT 59.905 34.615 0.00 0.00 0.00 3.06
6588 6820 5.414144 TGTGAAAAATTGTCTGTCAGTGTGA 59.586 36.000 0.00 0.00 0.00 3.58
6590 6822 5.895636 TGTGAAAAATTGTCTGTCAGTGT 57.104 34.783 0.00 0.00 0.00 3.55
6591 6823 5.174398 GCATGTGAAAAATTGTCTGTCAGTG 59.826 40.000 0.00 0.00 0.00 3.66
6600 6833 6.261381 AGCTTTTGATGCATGTGAAAAATTGT 59.739 30.769 2.46 0.00 0.00 2.71
6602 6835 6.664515 CAGCTTTTGATGCATGTGAAAAATT 58.335 32.000 2.46 0.00 0.00 1.82
6615 6848 3.719924 TGTTTTGAGGCAGCTTTTGATG 58.280 40.909 0.00 0.00 39.14 3.07
6617 6850 3.023119 TCTGTTTTGAGGCAGCTTTTGA 58.977 40.909 0.00 0.00 33.09 2.69
6618 6851 3.441496 TCTGTTTTGAGGCAGCTTTTG 57.559 42.857 0.00 0.00 33.09 2.44
6619 6852 3.006217 GGATCTGTTTTGAGGCAGCTTTT 59.994 43.478 0.00 0.00 33.09 2.27
6620 6853 2.560105 GGATCTGTTTTGAGGCAGCTTT 59.440 45.455 0.00 0.00 33.09 3.51
6621 6854 2.165998 GGATCTGTTTTGAGGCAGCTT 58.834 47.619 0.00 0.00 33.09 3.74
6622 6855 1.074405 TGGATCTGTTTTGAGGCAGCT 59.926 47.619 0.00 0.00 33.09 4.24
6623 6856 1.538047 TGGATCTGTTTTGAGGCAGC 58.462 50.000 0.00 0.00 33.09 5.25
6626 6859 4.051237 GTTTGTTGGATCTGTTTTGAGGC 58.949 43.478 0.00 0.00 0.00 4.70
6627 6860 4.099266 TGGTTTGTTGGATCTGTTTTGAGG 59.901 41.667 0.00 0.00 0.00 3.86
6628 6861 5.261209 TGGTTTGTTGGATCTGTTTTGAG 57.739 39.130 0.00 0.00 0.00 3.02
6629 6862 5.667539 TTGGTTTGTTGGATCTGTTTTGA 57.332 34.783 0.00 0.00 0.00 2.69
6630 6863 6.538021 TGATTTGGTTTGTTGGATCTGTTTTG 59.462 34.615 0.00 0.00 0.00 2.44
6676 6912 1.302033 CGTCTGGCCTTGTGCTCTT 60.302 57.895 3.32 0.00 40.92 2.85
6747 6983 1.070786 ACCCGATGTGTGCTTCGTT 59.929 52.632 0.00 0.00 39.63 3.85
6748 6984 1.667830 CACCCGATGTGTGCTTCGT 60.668 57.895 0.00 0.00 40.26 3.85
6749 6985 1.354337 CTCACCCGATGTGTGCTTCG 61.354 60.000 5.19 0.00 45.61 3.79
6756 6992 3.710044 CGCATCTCACCCGATGTG 58.290 61.111 0.00 0.00 46.88 3.21
6759 6995 1.115326 TCCATCGCATCTCACCCGAT 61.115 55.000 0.00 0.00 41.85 4.18
6760 6996 1.115326 ATCCATCGCATCTCACCCGA 61.115 55.000 0.00 0.00 35.29 5.14
6762 6998 0.604780 CCATCCATCGCATCTCACCC 60.605 60.000 0.00 0.00 0.00 4.61
6765 7001 1.067354 CGATCCATCCATCGCATCTCA 60.067 52.381 0.00 0.00 39.32 3.27
6767 7003 1.260544 TCGATCCATCCATCGCATCT 58.739 50.000 0.00 0.00 44.48 2.90
6917 7153 6.350445 CCAAGAAGAGAAGAGAAGAGAGAAGG 60.350 46.154 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.