Multiple sequence alignment - TraesCS2A01G372700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G372700 chr2A 100.000 5946 0 0 1 5946 615350930 615344985 0.000000e+00 10981.0
1 TraesCS2A01G372700 chr2D 94.841 2268 82 13 1 2246 473282430 473280176 0.000000e+00 3507.0
2 TraesCS2A01G372700 chr2D 92.386 2075 80 25 2436 4486 473280176 473278156 0.000000e+00 2885.0
3 TraesCS2A01G372700 chr2D 87.714 1522 93 33 4492 5946 473278107 473276613 0.000000e+00 1688.0
4 TraesCS2A01G372700 chr2D 93.258 89 5 1 3207 3295 330742392 330742305 4.840000e-26 130.0
5 TraesCS2A01G372700 chr2D 97.059 34 1 0 4491 4524 548076830 548076797 2.310000e-04 58.4
6 TraesCS2A01G372700 chr2B 90.967 2358 120 44 3672 5946 553616169 553613822 0.000000e+00 3088.0
7 TraesCS2A01G372700 chr2B 93.827 1134 46 11 1 1119 553619423 553618299 0.000000e+00 1685.0
8 TraesCS2A01G372700 chr2B 94.166 1097 47 7 1163 2246 553618299 553617207 0.000000e+00 1655.0
9 TraesCS2A01G372700 chr2B 95.000 780 32 6 2436 3212 553617207 553616432 0.000000e+00 1218.0
10 TraesCS2A01G372700 chr2B 93.182 132 8 1 3493 3623 553616301 553616170 6.080000e-45 193.0
11 TraesCS2A01G372700 chr2B 93.162 117 7 1 3264 3379 553616432 553616316 2.850000e-38 171.0
12 TraesCS2A01G372700 chr1B 83.283 329 40 10 5216 5534 599469957 599469634 7.540000e-74 289.0
13 TraesCS2A01G372700 chr5A 94.792 96 5 0 3202 3297 55158972 55159067 3.710000e-32 150.0
14 TraesCS2A01G372700 chr4B 93.333 90 6 0 3205 3294 315723363 315723274 3.740000e-27 134.0
15 TraesCS2A01G372700 chr4B 92.500 40 1 2 4491 4528 99431936 99431897 8.320000e-04 56.5
16 TraesCS2A01G372700 chr6D 93.103 87 6 0 3208 3294 470575007 470575093 1.740000e-25 128.0
17 TraesCS2A01G372700 chr6D 97.260 73 2 0 3209 3281 91072612 91072540 2.250000e-24 124.0
18 TraesCS2A01G372700 chr5D 92.135 89 5 1 3209 3295 473346573 473346661 2.250000e-24 124.0
19 TraesCS2A01G372700 chr6B 91.011 89 6 1 3209 3297 700090471 700090385 1.050000e-22 119.0
20 TraesCS2A01G372700 chr6B 90.698 86 8 0 3203 3288 146454785 146454870 1.350000e-21 115.0
21 TraesCS2A01G372700 chr6B 97.059 34 1 0 4491 4524 471675189 471675222 2.310000e-04 58.4
22 TraesCS2A01G372700 chr6A 97.059 34 1 0 4491 4524 409430689 409430722 2.310000e-04 58.4
23 TraesCS2A01G372700 chr7D 94.118 34 2 0 4491 4524 62184398 62184365 1.100000e-02 52.8
24 TraesCS2A01G372700 chr7D 94.118 34 2 0 4491 4524 62933762 62933729 1.100000e-02 52.8
25 TraesCS2A01G372700 chr7A 94.118 34 2 0 4491 4524 65508759 65508726 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G372700 chr2A 615344985 615350930 5945 True 10981.000000 10981 100.000 1 5946 1 chr2A.!!$R1 5945
1 TraesCS2A01G372700 chr2D 473276613 473282430 5817 True 2693.333333 3507 91.647 1 5946 3 chr2D.!!$R3 5945
2 TraesCS2A01G372700 chr2B 553613822 553619423 5601 True 1335.000000 3088 93.384 1 5946 6 chr2B.!!$R1 5945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 831 0.036294 CTCCTTCGACCAAACCTCCC 60.036 60.000 0.00 0.00 0.00 4.30 F
1111 1144 0.110688 CAAACATGACACCTCGCACG 60.111 55.000 0.00 0.00 0.00 5.34 F
1131 1164 1.067749 CTGCGCCATCTCTCCTCTG 59.932 63.158 4.18 0.00 0.00 3.35 F
2279 2325 1.067283 AGCGAAGTCTCACTGTCATGG 60.067 52.381 0.00 0.00 0.00 3.66 F
2708 2759 1.202794 TGTCCAGTCAATGCAGCTGAA 60.203 47.619 20.43 7.68 32.39 3.02 F
3226 3280 1.497161 ATACTCCCTCCGTCCCAAAG 58.503 55.000 0.00 0.00 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2305 1.067283 CCATGACAGTGAGACTTCGCT 60.067 52.381 0.00 0.0 44.81 4.93 R
2260 2306 1.337260 ACCATGACAGTGAGACTTCGC 60.337 52.381 0.00 0.0 0.00 4.70 R
2309 2355 1.955778 CCAACAGGCAGTGAAATGTCA 59.044 47.619 0.00 0.0 0.00 3.58 R
3636 3711 0.782384 GCGCACATATACCACTACGC 59.218 55.000 0.30 0.0 38.17 4.42 R
3801 3879 2.315386 GCCGTTCGGTTCAGGACAC 61.315 63.158 12.81 0.0 0.00 3.67 R
5065 5213 1.288752 CCAACGGCGGCAAAATCTT 59.711 52.632 13.24 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.339861 CCAAATCCTTCTTCTCATCCTTCCT 60.340 44.000 0.00 0.00 0.00 3.36
178 179 1.076339 CTTCGCCTCTCCTCCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
179 180 1.076632 TTCGCCTCTCCTCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
667 683 2.166459 TGAGAACGAGATAGCCTGGTTG 59.834 50.000 0.00 0.00 42.68 3.77
668 684 1.482593 AGAACGAGATAGCCTGGTTGG 59.517 52.381 0.00 0.00 42.68 3.77
669 685 1.207329 GAACGAGATAGCCTGGTTGGT 59.793 52.381 0.00 0.00 42.68 3.67
670 686 1.276622 ACGAGATAGCCTGGTTGGTT 58.723 50.000 0.00 0.00 38.35 3.67
672 688 2.280628 CGAGATAGCCTGGTTGGTTTC 58.719 52.381 0.00 0.00 38.35 2.78
673 689 2.644676 GAGATAGCCTGGTTGGTTTCC 58.355 52.381 0.00 0.00 38.35 3.13
674 690 1.992557 AGATAGCCTGGTTGGTTTCCA 59.007 47.619 0.00 0.00 38.35 3.53
675 691 2.092323 GATAGCCTGGTTGGTTTCCAC 58.908 52.381 0.00 0.00 38.35 4.02
676 692 0.847373 TAGCCTGGTTGGTTTCCACA 59.153 50.000 0.00 0.00 38.35 4.17
685 701 1.603739 GGTTTCCACAGGCCCAGTC 60.604 63.158 0.00 0.00 0.00 3.51
745 761 3.700038 CTCCTCCTGTACACGTATTCCTT 59.300 47.826 0.00 0.00 0.00 3.36
747 763 3.181478 CCTCCTGTACACGTATTCCTTCC 60.181 52.174 0.00 0.00 0.00 3.46
748 764 3.700038 CTCCTGTACACGTATTCCTTCCT 59.300 47.826 0.00 0.00 0.00 3.36
749 765 3.698040 TCCTGTACACGTATTCCTTCCTC 59.302 47.826 0.00 0.00 0.00 3.71
750 766 3.181478 CCTGTACACGTATTCCTTCCTCC 60.181 52.174 0.00 0.00 0.00 4.30
751 767 3.700038 CTGTACACGTATTCCTTCCTCCT 59.300 47.826 0.00 0.00 0.00 3.69
752 768 3.698040 TGTACACGTATTCCTTCCTCCTC 59.302 47.826 0.00 0.00 0.00 3.71
775 794 4.379243 CGCGCCCCTGTCTGTCTT 62.379 66.667 0.00 0.00 0.00 3.01
798 831 0.036294 CTCCTTCGACCAAACCTCCC 60.036 60.000 0.00 0.00 0.00 4.30
799 832 0.765135 TCCTTCGACCAAACCTCCCA 60.765 55.000 0.00 0.00 0.00 4.37
800 833 0.605589 CCTTCGACCAAACCTCCCAC 60.606 60.000 0.00 0.00 0.00 4.61
801 834 0.605589 CTTCGACCAAACCTCCCACC 60.606 60.000 0.00 0.00 0.00 4.61
802 835 1.057851 TTCGACCAAACCTCCCACCT 61.058 55.000 0.00 0.00 0.00 4.00
803 836 1.003718 CGACCAAACCTCCCACCTC 60.004 63.158 0.00 0.00 0.00 3.85
804 837 1.003718 GACCAAACCTCCCACCTCG 60.004 63.158 0.00 0.00 0.00 4.63
910 943 4.737855 TTTCTCACCTTATTAGCTCGCT 57.262 40.909 0.00 0.00 0.00 4.93
919 952 1.617018 ATTAGCTCGCTGGTGCAGGA 61.617 55.000 0.85 0.00 39.64 3.86
920 953 2.507110 TTAGCTCGCTGGTGCAGGAC 62.507 60.000 0.85 0.00 39.64 3.85
1111 1144 0.110688 CAAACATGACACCTCGCACG 60.111 55.000 0.00 0.00 0.00 5.34
1131 1164 1.067749 CTGCGCCATCTCTCCTCTG 59.932 63.158 4.18 0.00 0.00 3.35
1208 1241 8.184192 ACGATCCATTGTGTTGATTTTATTCTC 58.816 33.333 0.00 0.00 0.00 2.87
1281 1314 3.122323 TCGCCCAAATCGCCGTTC 61.122 61.111 0.00 0.00 0.00 3.95
1319 1352 2.490115 AGACGGTAGAACTCTGCTCTTG 59.510 50.000 0.00 0.00 0.00 3.02
1353 1386 1.901650 GAGCGCAACAGGAACCGAAG 61.902 60.000 11.47 0.00 0.00 3.79
1393 1426 2.224402 GGTCCTGATAGATTGTGGGAGC 60.224 54.545 0.00 0.00 34.91 4.70
1544 1577 7.365741 ACATTGAGCATGAAGTAAGTTTCAAG 58.634 34.615 0.00 0.00 40.21 3.02
1588 1621 7.049799 TGATTTACCTTTTCTCCTTGTTTGG 57.950 36.000 0.00 0.00 0.00 3.28
1698 1740 5.297776 AGTTGAGTTCCAGTTTGTCATCTTG 59.702 40.000 0.00 0.00 0.00 3.02
1704 1746 5.296151 TCCAGTTTGTCATCTTGTCTTCT 57.704 39.130 0.00 0.00 0.00 2.85
1708 1750 6.694411 CCAGTTTGTCATCTTGTCTTCTTTTG 59.306 38.462 0.00 0.00 0.00 2.44
1709 1751 6.197842 CAGTTTGTCATCTTGTCTTCTTTTGC 59.802 38.462 0.00 0.00 0.00 3.68
1710 1752 5.833406 TTGTCATCTTGTCTTCTTTTGCA 57.167 34.783 0.00 0.00 0.00 4.08
1712 1754 6.395426 TGTCATCTTGTCTTCTTTTGCAAT 57.605 33.333 0.00 0.00 0.00 3.56
1713 1755 6.210796 TGTCATCTTGTCTTCTTTTGCAATG 58.789 36.000 0.00 0.00 0.00 2.82
1756 1802 8.331742 GCTCTTCCTTGATTACTTTAGAAATCG 58.668 37.037 0.00 0.00 35.32 3.34
1785 1831 9.443283 GATTAAATTTGTTACAGAGCATAGCAG 57.557 33.333 0.00 0.00 0.00 4.24
1851 1897 6.189677 TGCAGTTTGTTAGGTTGTATATGC 57.810 37.500 0.00 0.00 0.00 3.14
2109 2155 3.383698 AGAGATGAGACTTCCCGGTTA 57.616 47.619 0.00 0.00 0.00 2.85
2113 2159 2.599408 TGAGACTTCCCGGTTAGACT 57.401 50.000 0.00 2.52 0.00 3.24
2187 2233 5.464722 CAGCTACTGCCAGATATTTACAGTG 59.535 44.000 0.00 0.00 41.45 3.66
2229 2275 8.039603 TGATATTACTGCTTTTTAGTGTGTGG 57.960 34.615 0.00 0.00 0.00 4.17
2260 2306 8.422973 CGTAGGTACTAGGCAGAATATAGTAG 57.577 42.308 0.00 0.00 44.14 2.57
2261 2307 7.011295 CGTAGGTACTAGGCAGAATATAGTAGC 59.989 44.444 11.07 11.07 44.14 3.58
2262 2308 6.121613 GGTACTAGGCAGAATATAGTAGCG 57.878 45.833 0.00 0.00 39.38 4.26
2263 2309 5.879223 GGTACTAGGCAGAATATAGTAGCGA 59.121 44.000 0.00 0.00 39.38 4.93
2264 2310 6.373774 GGTACTAGGCAGAATATAGTAGCGAA 59.626 42.308 0.00 0.00 39.38 4.70
2265 2311 6.503589 ACTAGGCAGAATATAGTAGCGAAG 57.496 41.667 0.00 0.00 0.00 3.79
2266 2312 6.005198 ACTAGGCAGAATATAGTAGCGAAGT 58.995 40.000 0.00 0.00 0.00 3.01
2267 2313 5.379732 AGGCAGAATATAGTAGCGAAGTC 57.620 43.478 0.00 0.00 0.00 3.01
2268 2314 5.074115 AGGCAGAATATAGTAGCGAAGTCT 58.926 41.667 0.00 0.00 0.00 3.24
2269 2315 5.182380 AGGCAGAATATAGTAGCGAAGTCTC 59.818 44.000 0.00 0.00 0.00 3.36
2270 2316 5.048643 GGCAGAATATAGTAGCGAAGTCTCA 60.049 44.000 0.00 0.00 0.00 3.27
2271 2317 5.854338 GCAGAATATAGTAGCGAAGTCTCAC 59.146 44.000 0.00 0.00 0.00 3.51
2272 2318 6.293735 GCAGAATATAGTAGCGAAGTCTCACT 60.294 42.308 0.00 0.00 0.00 3.41
2273 2319 7.075121 CAGAATATAGTAGCGAAGTCTCACTG 58.925 42.308 0.00 0.00 0.00 3.66
2274 2320 6.768861 AGAATATAGTAGCGAAGTCTCACTGT 59.231 38.462 0.00 0.00 0.00 3.55
2275 2321 4.886247 ATAGTAGCGAAGTCTCACTGTC 57.114 45.455 0.00 0.00 0.00 3.51
2276 2322 2.505405 AGTAGCGAAGTCTCACTGTCA 58.495 47.619 0.00 0.00 0.00 3.58
2277 2323 3.085533 AGTAGCGAAGTCTCACTGTCAT 58.914 45.455 0.00 0.00 0.00 3.06
2278 2324 2.360553 AGCGAAGTCTCACTGTCATG 57.639 50.000 0.00 0.00 0.00 3.07
2279 2325 1.067283 AGCGAAGTCTCACTGTCATGG 60.067 52.381 0.00 0.00 0.00 3.66
2280 2326 1.337260 GCGAAGTCTCACTGTCATGGT 60.337 52.381 0.00 0.00 0.00 3.55
2281 2327 2.868044 GCGAAGTCTCACTGTCATGGTT 60.868 50.000 0.00 0.00 0.00 3.67
2282 2328 3.614150 GCGAAGTCTCACTGTCATGGTTA 60.614 47.826 0.00 0.00 0.00 2.85
2283 2329 4.748892 CGAAGTCTCACTGTCATGGTTAT 58.251 43.478 0.00 0.00 0.00 1.89
2284 2330 4.564372 CGAAGTCTCACTGTCATGGTTATG 59.436 45.833 0.00 0.00 35.57 1.90
2285 2331 5.482908 GAAGTCTCACTGTCATGGTTATGT 58.517 41.667 0.00 0.00 35.73 2.29
2286 2332 5.078411 AGTCTCACTGTCATGGTTATGTC 57.922 43.478 0.00 0.00 35.73 3.06
2287 2333 4.081420 AGTCTCACTGTCATGGTTATGTCC 60.081 45.833 0.00 0.00 35.73 4.02
2288 2334 3.837731 TCTCACTGTCATGGTTATGTCCA 59.162 43.478 0.00 0.00 42.01 4.02
2290 2336 5.045651 TCTCACTGTCATGGTTATGTCCATT 60.046 40.000 0.00 0.00 44.75 3.16
2291 2337 5.185454 TCACTGTCATGGTTATGTCCATTC 58.815 41.667 0.00 0.59 44.75 2.67
2292 2338 4.034394 CACTGTCATGGTTATGTCCATTCG 59.966 45.833 0.00 0.00 44.75 3.34
2293 2339 4.081142 ACTGTCATGGTTATGTCCATTCGA 60.081 41.667 0.00 0.00 44.75 3.71
2294 2340 5.034852 TGTCATGGTTATGTCCATTCGAT 57.965 39.130 0.00 0.00 44.75 3.59
2295 2341 5.056480 TGTCATGGTTATGTCCATTCGATC 58.944 41.667 0.00 0.00 44.75 3.69
2296 2342 4.150627 GTCATGGTTATGTCCATTCGATCG 59.849 45.833 9.36 9.36 44.75 3.69
2297 2343 3.812156 TGGTTATGTCCATTCGATCGT 57.188 42.857 15.94 0.00 31.96 3.73
2298 2344 4.131649 TGGTTATGTCCATTCGATCGTT 57.868 40.909 15.94 0.89 31.96 3.85
2299 2345 4.116961 TGGTTATGTCCATTCGATCGTTC 58.883 43.478 15.94 1.61 31.96 3.95
2300 2346 3.493503 GGTTATGTCCATTCGATCGTTCC 59.506 47.826 15.94 0.00 0.00 3.62
2301 2347 4.369182 GTTATGTCCATTCGATCGTTCCT 58.631 43.478 15.94 0.00 0.00 3.36
2302 2348 2.579207 TGTCCATTCGATCGTTCCTC 57.421 50.000 15.94 3.82 0.00 3.71
2303 2349 2.100197 TGTCCATTCGATCGTTCCTCT 58.900 47.619 15.94 0.00 0.00 3.69
2304 2350 2.496070 TGTCCATTCGATCGTTCCTCTT 59.504 45.455 15.94 0.00 0.00 2.85
2305 2351 3.697542 TGTCCATTCGATCGTTCCTCTTA 59.302 43.478 15.94 0.00 0.00 2.10
2306 2352 4.158949 TGTCCATTCGATCGTTCCTCTTAA 59.841 41.667 15.94 0.00 0.00 1.85
2307 2353 5.107133 GTCCATTCGATCGTTCCTCTTAAA 58.893 41.667 15.94 0.00 0.00 1.52
2308 2354 5.579511 GTCCATTCGATCGTTCCTCTTAAAA 59.420 40.000 15.94 0.00 0.00 1.52
2309 2355 6.258068 GTCCATTCGATCGTTCCTCTTAAAAT 59.742 38.462 15.94 0.18 0.00 1.82
2310 2356 6.257849 TCCATTCGATCGTTCCTCTTAAAATG 59.742 38.462 15.94 12.45 0.00 2.32
2311 2357 6.257849 CCATTCGATCGTTCCTCTTAAAATGA 59.742 38.462 15.94 0.00 0.00 2.57
2312 2358 6.642683 TTCGATCGTTCCTCTTAAAATGAC 57.357 37.500 15.94 0.00 0.00 3.06
2313 2359 5.716094 TCGATCGTTCCTCTTAAAATGACA 58.284 37.500 15.94 0.00 0.00 3.58
2314 2360 6.338146 TCGATCGTTCCTCTTAAAATGACAT 58.662 36.000 15.94 0.00 0.00 3.06
2315 2361 6.816640 TCGATCGTTCCTCTTAAAATGACATT 59.183 34.615 15.94 0.00 0.00 2.71
2316 2362 7.333423 TCGATCGTTCCTCTTAAAATGACATTT 59.667 33.333 15.94 7.62 0.00 2.32
2317 2363 7.636359 CGATCGTTCCTCTTAAAATGACATTTC 59.364 37.037 13.68 0.00 0.00 2.17
2318 2364 7.737972 TCGTTCCTCTTAAAATGACATTTCA 57.262 32.000 13.68 0.00 35.73 2.69
2319 2365 7.581476 TCGTTCCTCTTAAAATGACATTTCAC 58.419 34.615 13.68 1.66 33.38 3.18
2320 2366 7.444183 TCGTTCCTCTTAAAATGACATTTCACT 59.556 33.333 13.68 1.69 33.38 3.41
2321 2367 7.535258 CGTTCCTCTTAAAATGACATTTCACTG 59.465 37.037 13.68 5.60 33.38 3.66
2322 2368 6.913170 TCCTCTTAAAATGACATTTCACTGC 58.087 36.000 13.68 0.00 33.38 4.40
2323 2369 6.071952 TCCTCTTAAAATGACATTTCACTGCC 60.072 38.462 13.68 0.00 33.38 4.85
2324 2370 6.071728 CCTCTTAAAATGACATTTCACTGCCT 60.072 38.462 13.68 0.00 33.38 4.75
2325 2371 6.680810 TCTTAAAATGACATTTCACTGCCTG 58.319 36.000 13.68 0.66 33.38 4.85
2326 2372 4.942761 AAAATGACATTTCACTGCCTGT 57.057 36.364 13.68 0.00 33.38 4.00
2327 2373 4.942761 AAATGACATTTCACTGCCTGTT 57.057 36.364 7.62 0.00 33.38 3.16
2328 2374 3.928727 ATGACATTTCACTGCCTGTTG 57.071 42.857 0.00 0.00 33.38 3.33
2329 2375 1.955778 TGACATTTCACTGCCTGTTGG 59.044 47.619 0.00 0.00 0.00 3.77
2330 2376 2.229792 GACATTTCACTGCCTGTTGGA 58.770 47.619 0.00 0.00 34.57 3.53
2331 2377 2.821969 GACATTTCACTGCCTGTTGGAT 59.178 45.455 0.00 0.00 34.57 3.41
2332 2378 3.233507 ACATTTCACTGCCTGTTGGATT 58.766 40.909 0.00 0.00 34.57 3.01
2333 2379 4.406456 ACATTTCACTGCCTGTTGGATTA 58.594 39.130 0.00 0.00 34.57 1.75
2334 2380 4.460382 ACATTTCACTGCCTGTTGGATTAG 59.540 41.667 0.00 0.00 34.57 1.73
2335 2381 3.788227 TTCACTGCCTGTTGGATTAGT 57.212 42.857 0.00 0.00 34.57 2.24
2336 2382 3.788227 TCACTGCCTGTTGGATTAGTT 57.212 42.857 0.00 0.00 34.57 2.24
2337 2383 4.098914 TCACTGCCTGTTGGATTAGTTT 57.901 40.909 0.00 0.00 34.57 2.66
2338 2384 5.235850 TCACTGCCTGTTGGATTAGTTTA 57.764 39.130 0.00 0.00 34.57 2.01
2339 2385 5.245531 TCACTGCCTGTTGGATTAGTTTAG 58.754 41.667 0.00 0.00 34.57 1.85
2340 2386 5.003804 CACTGCCTGTTGGATTAGTTTAGT 58.996 41.667 0.00 0.00 34.57 2.24
2341 2387 6.014070 TCACTGCCTGTTGGATTAGTTTAGTA 60.014 38.462 0.00 0.00 34.57 1.82
2342 2388 6.823689 CACTGCCTGTTGGATTAGTTTAGTAT 59.176 38.462 0.00 0.00 34.57 2.12
2343 2389 7.336931 CACTGCCTGTTGGATTAGTTTAGTATT 59.663 37.037 0.00 0.00 34.57 1.89
2344 2390 7.888546 ACTGCCTGTTGGATTAGTTTAGTATTT 59.111 33.333 0.00 0.00 34.57 1.40
2345 2391 8.276252 TGCCTGTTGGATTAGTTTAGTATTTC 57.724 34.615 0.00 0.00 34.57 2.17
2346 2392 7.885922 TGCCTGTTGGATTAGTTTAGTATTTCA 59.114 33.333 0.00 0.00 34.57 2.69
2347 2393 8.398665 GCCTGTTGGATTAGTTTAGTATTTCAG 58.601 37.037 0.00 0.00 34.57 3.02
2348 2394 9.667107 CCTGTTGGATTAGTTTAGTATTTCAGA 57.333 33.333 0.00 0.00 34.57 3.27
2386 2432 8.821894 CACAAAAGGTAGAAGACATATAGAAGC 58.178 37.037 0.00 0.00 0.00 3.86
2387 2433 8.540388 ACAAAAGGTAGAAGACATATAGAAGCA 58.460 33.333 0.00 0.00 0.00 3.91
2388 2434 9.553064 CAAAAGGTAGAAGACATATAGAAGCAT 57.447 33.333 0.00 0.00 0.00 3.79
2389 2435 9.553064 AAAAGGTAGAAGACATATAGAAGCATG 57.447 33.333 0.00 0.00 0.00 4.06
2390 2436 8.484214 AAGGTAGAAGACATATAGAAGCATGA 57.516 34.615 0.00 0.00 0.00 3.07
2391 2437 8.663209 AGGTAGAAGACATATAGAAGCATGAT 57.337 34.615 0.00 0.00 0.00 2.45
2392 2438 8.530311 AGGTAGAAGACATATAGAAGCATGATG 58.470 37.037 0.00 0.00 0.00 3.07
2393 2439 8.310382 GGTAGAAGACATATAGAAGCATGATGT 58.690 37.037 0.00 0.00 33.52 3.06
2394 2440 9.703892 GTAGAAGACATATAGAAGCATGATGTT 57.296 33.333 0.00 0.00 31.03 2.71
2395 2441 8.604640 AGAAGACATATAGAAGCATGATGTTG 57.395 34.615 0.00 0.00 31.03 3.33
2396 2442 8.427276 AGAAGACATATAGAAGCATGATGTTGA 58.573 33.333 0.00 0.00 31.03 3.18
2397 2443 7.959689 AGACATATAGAAGCATGATGTTGAC 57.040 36.000 0.00 0.00 31.03 3.18
2398 2444 7.503549 AGACATATAGAAGCATGATGTTGACA 58.496 34.615 0.00 0.00 31.03 3.58
2399 2445 7.989170 AGACATATAGAAGCATGATGTTGACAA 59.011 33.333 0.00 0.00 31.03 3.18
2400 2446 8.687292 ACATATAGAAGCATGATGTTGACAAT 57.313 30.769 0.00 0.00 0.00 2.71
2401 2447 9.128404 ACATATAGAAGCATGATGTTGACAATT 57.872 29.630 0.00 0.00 0.00 2.32
2402 2448 9.961265 CATATAGAAGCATGATGTTGACAATTT 57.039 29.630 0.00 0.00 0.00 1.82
2405 2451 9.793252 ATAGAAGCATGATGTTGACAATTTTAC 57.207 29.630 0.00 0.00 0.00 2.01
2406 2452 7.889469 AGAAGCATGATGTTGACAATTTTACT 58.111 30.769 0.00 0.00 0.00 2.24
2407 2453 9.013229 AGAAGCATGATGTTGACAATTTTACTA 57.987 29.630 0.00 0.00 0.00 1.82
2408 2454 9.282247 GAAGCATGATGTTGACAATTTTACTAG 57.718 33.333 0.00 0.00 0.00 2.57
2409 2455 8.565896 AGCATGATGTTGACAATTTTACTAGA 57.434 30.769 0.00 0.00 0.00 2.43
2410 2456 9.013229 AGCATGATGTTGACAATTTTACTAGAA 57.987 29.630 0.00 0.00 0.00 2.10
2411 2457 9.793252 GCATGATGTTGACAATTTTACTAGAAT 57.207 29.630 0.00 0.00 0.00 2.40
2431 2477 9.274065 CTAGAATTAACAATTTTTCCTGTACGC 57.726 33.333 0.00 0.00 0.00 4.42
2432 2478 7.653647 AGAATTAACAATTTTTCCTGTACGCA 58.346 30.769 0.00 0.00 0.00 5.24
2433 2479 8.138712 AGAATTAACAATTTTTCCTGTACGCAA 58.861 29.630 0.00 0.00 0.00 4.85
2434 2480 8.649973 AATTAACAATTTTTCCTGTACGCAAA 57.350 26.923 0.00 0.00 0.00 3.68
2447 2493 6.036735 TCCTGTACGCAAAAACATATAGAAGC 59.963 38.462 0.00 0.00 0.00 3.86
2451 2497 6.435430 ACGCAAAAACATATAGAAGCATGA 57.565 33.333 0.00 0.00 0.00 3.07
2453 2499 6.914215 ACGCAAAAACATATAGAAGCATGATG 59.086 34.615 0.00 0.00 0.00 3.07
2466 2512 2.378038 GCATGATGTTGCTCCCCTTTA 58.622 47.619 0.00 0.00 39.57 1.85
2478 2524 3.798202 CTCCCCTTTATCTCTGTTTCGG 58.202 50.000 0.00 0.00 0.00 4.30
2479 2525 2.093128 TCCCCTTTATCTCTGTTTCGGC 60.093 50.000 0.00 0.00 0.00 5.54
2480 2526 2.355716 CCCCTTTATCTCTGTTTCGGCA 60.356 50.000 0.00 0.00 0.00 5.69
2556 2602 4.697514 ACATGCGTTACTGAGCTGATATT 58.302 39.130 0.00 0.00 0.00 1.28
2559 2605 4.503910 TGCGTTACTGAGCTGATATTTGT 58.496 39.130 0.00 0.00 0.00 2.83
2585 2631 8.603242 ACATATTTCGGTGGATTATACTGAAC 57.397 34.615 0.00 0.00 41.66 3.18
2586 2632 7.384115 ACATATTTCGGTGGATTATACTGAACG 59.616 37.037 0.00 0.00 41.66 3.95
2607 2653 4.833380 ACGAGTCCTGTATATTATGCCTGT 59.167 41.667 0.00 0.00 0.00 4.00
2629 2675 7.868415 CCTGTTTAGTACTGTAGAAGGATATGC 59.132 40.741 5.39 0.00 0.00 3.14
2630 2676 8.301252 TGTTTAGTACTGTAGAAGGATATGCA 57.699 34.615 5.39 0.00 0.00 3.96
2631 2677 8.924303 TGTTTAGTACTGTAGAAGGATATGCAT 58.076 33.333 5.39 3.79 0.00 3.96
2675 2726 5.111293 GGTGGGATAAAACAAATGCATCAG 58.889 41.667 0.00 0.00 0.00 2.90
2699 2750 7.551974 CAGAACTTGATAGATTGTCCAGTCAAT 59.448 37.037 0.00 0.00 40.20 2.57
2706 2757 1.241165 TTGTCCAGTCAATGCAGCTG 58.759 50.000 10.11 10.11 0.00 4.24
2708 2759 1.202794 TGTCCAGTCAATGCAGCTGAA 60.203 47.619 20.43 7.68 32.39 3.02
2714 2765 4.381612 CCAGTCAATGCAGCTGAATTTGAT 60.382 41.667 17.86 3.29 32.39 2.57
2753 2804 5.638657 GCTTCCTAGTTCAGATATGCATCAG 59.361 44.000 0.19 0.00 33.21 2.90
2767 2818 3.954200 TGCATCAGGAAAGCTTCATGTA 58.046 40.909 0.00 0.00 41.81 2.29
2865 2916 5.667539 TCTGGACTATCCTCTTTGTTCTG 57.332 43.478 0.00 0.00 37.46 3.02
3031 3082 3.766051 GGGTGATGCCAAGAAAGAAGATT 59.234 43.478 0.00 0.00 39.65 2.40
3218 3272 9.191479 GATGGGATATAATATATACTCCCTCCG 57.809 40.741 15.00 0.00 42.38 4.63
3226 3280 1.497161 ATACTCCCTCCGTCCCAAAG 58.503 55.000 0.00 0.00 0.00 2.77
3356 3425 2.954316 TGCTCAGATGCATTGCAAAAG 58.046 42.857 16.46 11.20 43.62 2.27
3395 3464 8.862550 AAAAACTGAGTCAAGCTATTTCAAAG 57.137 30.769 0.00 0.00 0.00 2.77
3396 3465 7.573968 AAACTGAGTCAAGCTATTTCAAAGT 57.426 32.000 0.00 0.00 0.00 2.66
3397 3466 7.573968 AACTGAGTCAAGCTATTTCAAAGTT 57.426 32.000 0.00 0.00 0.00 2.66
3398 3467 6.963796 ACTGAGTCAAGCTATTTCAAAGTTG 58.036 36.000 0.00 0.00 0.00 3.16
3399 3468 6.543831 ACTGAGTCAAGCTATTTCAAAGTTGT 59.456 34.615 0.00 0.00 0.00 3.32
3400 3469 7.715249 ACTGAGTCAAGCTATTTCAAAGTTGTA 59.285 33.333 0.00 0.00 0.00 2.41
3401 3470 7.861630 TGAGTCAAGCTATTTCAAAGTTGTAC 58.138 34.615 0.00 0.00 0.00 2.90
3402 3471 7.715249 TGAGTCAAGCTATTTCAAAGTTGTACT 59.285 33.333 0.00 0.00 0.00 2.73
3403 3472 9.204570 GAGTCAAGCTATTTCAAAGTTGTACTA 57.795 33.333 0.00 0.00 0.00 1.82
3404 3473 9.555727 AGTCAAGCTATTTCAAAGTTGTACTAA 57.444 29.630 0.00 0.00 0.00 2.24
3432 3501 4.272018 GTCTGCTAGAATACACTGCCATTG 59.728 45.833 0.00 0.00 0.00 2.82
3572 3646 8.341173 GTGATATCAGCTGGTGAATTTTCTTAG 58.659 37.037 15.13 0.00 39.19 2.18
3612 3687 9.107177 TGTGTTGAAATTTGTTAAATTGCTCAT 57.893 25.926 0.00 0.00 40.05 2.90
3624 3699 2.489938 TTGCTCATGTAGGTTGGACC 57.510 50.000 0.00 0.00 38.99 4.46
3644 3719 2.965477 GTAGGAGATACGCGTAGTGG 57.035 55.000 24.78 0.00 45.78 4.00
3653 3728 2.129823 ACGCGTAGTGGTATATGTGC 57.870 50.000 11.67 0.00 45.78 4.57
3701 3779 7.702348 GTGGTTATATCAGCTGGTGAATTTTTC 59.298 37.037 15.13 4.06 39.19 2.29
3758 3836 6.948886 TGTAGGTTAAAACATGGCTAAATGGA 59.051 34.615 0.00 0.00 31.46 3.41
3765 3843 3.164268 ACATGGCTAAATGGAGTGCAAA 58.836 40.909 0.00 0.00 31.46 3.68
3785 3863 9.130312 GTGCAAATAAAATAAACGGATACACAA 57.870 29.630 0.00 0.00 0.00 3.33
3801 3879 8.338259 CGGATACACAAAGGAAATGAGAAATAG 58.662 37.037 0.00 0.00 0.00 1.73
3862 3940 5.528043 TTTCTCTCTCCTGATGATACTGC 57.472 43.478 0.00 0.00 0.00 4.40
3914 3992 2.643801 TGGTAACGGTACTGGGGAATTT 59.356 45.455 11.05 0.00 42.51 1.82
3917 3995 4.323409 GGTAACGGTACTGGGGAATTTGTA 60.323 45.833 11.05 0.00 0.00 2.41
3923 4001 6.096695 CGGTACTGGGGAATTTGTATTTTTG 58.903 40.000 0.00 0.00 0.00 2.44
4239 4317 9.352784 CTCTAGTGAAAGTATCAGTTCTCAAAG 57.647 37.037 0.00 0.00 41.93 2.77
4245 4323 8.956426 TGAAAGTATCAGTTCTCAAAGTTTTGT 58.044 29.630 4.67 0.00 35.25 2.83
4346 4424 9.303116 TCAAATTTCAATAGCAAACTAGGGTTA 57.697 29.630 0.00 0.00 34.90 2.85
4350 4428 8.871629 TTTCAATAGCAAACTAGGGTTATTCA 57.128 30.769 0.00 0.00 34.90 2.57
4446 4535 9.880157 AAAAATTCAAATCCTACAATGAGATGG 57.120 29.630 0.00 0.00 0.00 3.51
4449 4538 8.915057 ATTCAAATCCTACAATGAGATGGTAG 57.085 34.615 0.00 0.00 35.42 3.18
4486 4575 3.366273 CGCACAACATTTGCTTATGTCCT 60.366 43.478 5.01 0.00 37.76 3.85
4487 4576 4.168760 GCACAACATTTGCTTATGTCCTC 58.831 43.478 5.01 0.00 37.76 3.71
4488 4577 4.737054 CACAACATTTGCTTATGTCCTCC 58.263 43.478 5.01 0.00 37.76 4.30
4489 4578 4.218200 CACAACATTTGCTTATGTCCTCCA 59.782 41.667 5.01 0.00 37.76 3.86
4503 4637 4.628074 TGTCCTCCAAAGTCTCTAAAACG 58.372 43.478 0.00 0.00 0.00 3.60
4524 4658 8.950403 AAACGTCTTATATTTGTTTTCAGAGC 57.050 30.769 0.00 0.00 29.01 4.09
4569 4705 7.873719 TGTTTCTTATCAACTGAACCTTCAA 57.126 32.000 0.00 0.00 36.64 2.69
4626 4764 9.667107 TTTATTTTGTCTGATCTAGGAAATCGT 57.333 29.630 0.00 0.00 0.00 3.73
4712 4859 9.399403 GAAAAAGGACACAAAGTTATCTGATTC 57.601 33.333 0.00 0.00 0.00 2.52
4755 4903 5.117355 ACTCGTGATAAGTTTTCAGTCGA 57.883 39.130 8.14 8.14 0.00 4.20
4757 4905 5.800941 ACTCGTGATAAGTTTTCAGTCGATC 59.199 40.000 8.65 0.00 0.00 3.69
4866 5014 2.435938 GGCGATCCAGCGGAACAA 60.436 61.111 1.44 0.00 34.34 2.83
4974 5122 4.209288 CAGCTCATGTAACCGTACTATTGC 59.791 45.833 0.00 0.00 0.00 3.56
4996 5144 5.117355 CGCAAATGGATTGAGCTATTGAT 57.883 39.130 0.00 0.00 41.85 2.57
4998 5146 5.506815 CGCAAATGGATTGAGCTATTGATGT 60.507 40.000 0.00 0.00 41.85 3.06
4999 5147 5.690409 GCAAATGGATTGAGCTATTGATGTG 59.310 40.000 0.00 0.00 41.85 3.21
5002 5150 5.101648 TGGATTGAGCTATTGATGTGTCA 57.898 39.130 0.00 0.00 0.00 3.58
5059 5207 8.873830 CATATTGGTCAGTGTTACTCTGTTAAG 58.126 37.037 13.12 0.00 34.86 1.85
5065 5213 8.521176 GGTCAGTGTTACTCTGTTAAGATTCTA 58.479 37.037 13.12 0.00 34.86 2.10
5082 5230 1.466950 TCTAAGATTTTGCCGCCGTTG 59.533 47.619 0.00 0.00 0.00 4.10
5120 5268 9.653287 CAGTATAGTTCCTCTTTTGAACACATA 57.347 33.333 5.99 1.21 43.57 2.29
5245 5421 1.808945 CACATGACTTCTCCTTGCACC 59.191 52.381 0.00 0.00 0.00 5.01
5276 5452 0.175302 TGCAGTTGGGCAAACACTTG 59.825 50.000 7.64 0.00 41.65 3.16
5278 5454 1.802508 GCAGTTGGGCAAACACTTGTC 60.803 52.381 7.64 0.00 41.61 3.18
5279 5455 0.738389 AGTTGGGCAAACACTTGTCG 59.262 50.000 7.64 0.00 41.61 4.35
5280 5456 0.736053 GTTGGGCAAACACTTGTCGA 59.264 50.000 0.00 0.00 38.09 4.20
5281 5457 1.336755 GTTGGGCAAACACTTGTCGAT 59.663 47.619 0.00 0.00 38.09 3.59
5282 5458 2.550606 GTTGGGCAAACACTTGTCGATA 59.449 45.455 0.00 0.00 38.09 2.92
5316 5497 5.812642 CACGGCTACTAATTGAAATGTCTCT 59.187 40.000 0.00 0.00 0.00 3.10
5318 5499 7.491372 CACGGCTACTAATTGAAATGTCTCTAA 59.509 37.037 0.00 0.00 0.00 2.10
5319 5500 7.491696 ACGGCTACTAATTGAAATGTCTCTAAC 59.508 37.037 0.00 0.00 0.00 2.34
5320 5501 7.491372 CGGCTACTAATTGAAATGTCTCTAACA 59.509 37.037 0.00 0.00 43.51 2.41
5353 5542 8.483307 AAAATTCTTTTCTGATGCGCAATATT 57.517 26.923 17.11 0.00 0.00 1.28
5402 5592 7.660112 TCTACAATGTGCATTTTGAGATGTTT 58.340 30.769 15.89 0.00 0.00 2.83
5413 5616 9.584839 GCATTTTGAGATGTTTTGAAAATGTAC 57.415 29.630 0.00 0.00 42.24 2.90
5414 5617 9.782028 CATTTTGAGATGTTTTGAAAATGTACG 57.218 29.630 0.00 0.00 38.40 3.67
5478 5684 7.167136 GGAGATTCGTAAACGTAAATCCAGTAG 59.833 40.741 11.22 0.00 40.80 2.57
5488 5694 2.584835 AATCCAGTAGCAGCAAACCA 57.415 45.000 0.00 0.00 0.00 3.67
5502 5709 2.636830 CAAACCACCAACCAATGCAAA 58.363 42.857 0.00 0.00 0.00 3.68
5523 5730 6.072893 GCAAAAACAATGCAGATTCTGGAAAT 60.073 34.615 12.12 1.74 43.29 2.17
5528 5735 8.538409 AACAATGCAGATTCTGGAAATAAAAC 57.462 30.769 12.12 0.00 35.08 2.43
5543 5752 6.437477 GGAAATAAAACCCAGACTGAGGAAAT 59.563 38.462 14.71 4.92 0.00 2.17
5554 5763 6.071728 CCAGACTGAGGAAATTTTGCATTACT 60.072 38.462 3.32 0.00 0.00 2.24
5583 5792 1.761784 ACAGATGCAGGCAAACCAAAA 59.238 42.857 0.00 0.00 39.06 2.44
5592 5801 1.511850 GCAAACCAAAACAGGCCATC 58.488 50.000 5.01 0.00 0.00 3.51
5875 6087 1.270305 CCGCCTCTTCAGTTCAGAACA 60.270 52.381 15.85 0.00 0.00 3.18
5880 6092 4.742138 GCCTCTTCAGTTCAGAACAAGAGT 60.742 45.833 26.65 4.90 38.70 3.24
5881 6093 5.363939 CCTCTTCAGTTCAGAACAAGAGTT 58.636 41.667 26.65 4.31 38.70 3.01
5885 6097 6.758886 TCTTCAGTTCAGAACAAGAGTTTCTC 59.241 38.462 15.85 0.00 38.30 2.87
5889 6101 1.801178 CAGAACAAGAGTTTCTCGCCC 59.199 52.381 0.00 0.00 38.30 6.13
5930 6142 2.814919 ACACAAGACCACAAACACGAAA 59.185 40.909 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.103935 GGGAAAAGGATAAGAAGAAGAAGAAGA 58.896 37.037 0.00 0.00 0.00 2.87
178 179 2.697761 CGGAAAGCGAGTCGGAGGA 61.698 63.158 15.52 0.00 0.00 3.71
179 180 2.202623 CGGAAAGCGAGTCGGAGG 60.203 66.667 15.52 0.00 0.00 4.30
352 353 3.827898 GCGTGACGAGGAGGAGGG 61.828 72.222 10.10 0.00 0.00 4.30
633 641 0.315568 GTTCTCACACTCGCCACTCT 59.684 55.000 0.00 0.00 0.00 3.24
667 683 1.603739 GACTGGGCCTGTGGAAACC 60.604 63.158 21.65 1.20 0.00 3.27
668 684 1.966451 CGACTGGGCCTGTGGAAAC 60.966 63.158 21.65 4.99 0.00 2.78
669 685 2.429930 CGACTGGGCCTGTGGAAA 59.570 61.111 21.65 0.00 0.00 3.13
670 686 4.329545 GCGACTGGGCCTGTGGAA 62.330 66.667 25.68 0.00 0.00 3.53
685 701 3.041940 GACACCGGTTCACTGGCG 61.042 66.667 2.97 0.00 46.43 5.69
775 794 0.974383 GGTTTGGTCGAAGGAGAGGA 59.026 55.000 0.00 0.00 0.00 3.71
891 924 2.362397 CCAGCGAGCTAATAAGGTGAGA 59.638 50.000 0.00 0.00 34.41 3.27
902 935 2.679996 TCCTGCACCAGCGAGCTA 60.680 61.111 0.00 0.00 46.23 3.32
928 961 1.648467 AAATTCAAGAGCCGGCGAGC 61.648 55.000 23.20 14.98 0.00 5.03
931 964 0.097674 CTGAAATTCAAGAGCCGGCG 59.902 55.000 23.20 6.78 0.00 6.46
1131 1164 3.195825 ACTGATACACTAGGTTCCAGTGC 59.804 47.826 15.74 6.22 45.96 4.40
1281 1314 2.659757 CGTCTTGATTGCTGCATTTGTG 59.340 45.455 1.84 0.00 0.00 3.33
1363 1396 6.204301 CACAATCTATCAGGACCATAAGCTTG 59.796 42.308 9.86 0.00 0.00 4.01
1371 1404 3.041211 CTCCCACAATCTATCAGGACCA 58.959 50.000 0.00 0.00 0.00 4.02
1544 1577 3.748048 TCAACAGACAATGCAGAGTAAGC 59.252 43.478 0.00 0.00 0.00 3.09
1685 1727 6.127647 TGCAAAAGAAGACAAGATGACAAACT 60.128 34.615 0.00 0.00 0.00 2.66
1760 1806 7.917505 GCTGCTATGCTCTGTAACAAATTTAAT 59.082 33.333 0.00 0.00 0.00 1.40
1763 1809 5.644644 GCTGCTATGCTCTGTAACAAATTT 58.355 37.500 0.00 0.00 0.00 1.82
1846 1892 9.574458 GTCGATACAGTATACAAAGATGCATAT 57.426 33.333 0.00 0.00 0.00 1.78
1891 1937 4.021368 ACACACAGTCCTTACCTGTATGAC 60.021 45.833 5.89 0.00 39.19 3.06
2109 2155 2.182827 TGCTGGTGAGCTATCAAGTCT 58.817 47.619 0.00 0.00 46.39 3.24
2113 2159 2.336945 CCATGCTGGTGAGCTATCAA 57.663 50.000 0.00 0.00 46.39 2.57
2187 2233 8.997323 AGTAATATCAGAGCAATGCTGTATTTC 58.003 33.333 14.48 9.45 39.88 2.17
2240 2286 6.981762 TCGCTACTATATTCTGCCTAGTAC 57.018 41.667 0.00 0.00 0.00 2.73
2245 2291 5.074115 AGACTTCGCTACTATATTCTGCCT 58.926 41.667 0.00 0.00 0.00 4.75
2246 2292 5.048643 TGAGACTTCGCTACTATATTCTGCC 60.049 44.000 0.00 0.00 0.00 4.85
2247 2293 5.854338 GTGAGACTTCGCTACTATATTCTGC 59.146 44.000 0.00 0.00 0.00 4.26
2248 2294 7.075121 CAGTGAGACTTCGCTACTATATTCTG 58.925 42.308 0.00 0.00 42.13 3.02
2249 2295 6.768861 ACAGTGAGACTTCGCTACTATATTCT 59.231 38.462 0.00 0.00 42.13 2.40
2250 2296 6.961576 ACAGTGAGACTTCGCTACTATATTC 58.038 40.000 0.00 0.00 42.13 1.75
2251 2297 6.542735 TGACAGTGAGACTTCGCTACTATATT 59.457 38.462 0.00 0.00 42.13 1.28
2252 2298 6.056236 TGACAGTGAGACTTCGCTACTATAT 58.944 40.000 0.00 0.00 42.13 0.86
2253 2299 5.425630 TGACAGTGAGACTTCGCTACTATA 58.574 41.667 0.00 0.00 42.13 1.31
2254 2300 4.262617 TGACAGTGAGACTTCGCTACTAT 58.737 43.478 0.00 0.00 42.13 2.12
2255 2301 3.671716 TGACAGTGAGACTTCGCTACTA 58.328 45.455 0.00 0.00 42.13 1.82
2256 2302 2.505405 TGACAGTGAGACTTCGCTACT 58.495 47.619 0.00 0.00 42.13 2.57
2257 2303 2.991434 TGACAGTGAGACTTCGCTAC 57.009 50.000 0.00 0.00 42.13 3.58
2258 2304 2.164422 CCATGACAGTGAGACTTCGCTA 59.836 50.000 0.00 0.00 42.13 4.26
2259 2305 1.067283 CCATGACAGTGAGACTTCGCT 60.067 52.381 0.00 0.00 44.81 4.93
2260 2306 1.337260 ACCATGACAGTGAGACTTCGC 60.337 52.381 0.00 0.00 0.00 4.70
2261 2307 2.732412 ACCATGACAGTGAGACTTCG 57.268 50.000 0.00 0.00 0.00 3.79
2262 2308 5.482908 ACATAACCATGACAGTGAGACTTC 58.517 41.667 0.00 0.00 35.96 3.01
2263 2309 5.482908 GACATAACCATGACAGTGAGACTT 58.517 41.667 0.00 0.00 35.96 3.01
2264 2310 4.081420 GGACATAACCATGACAGTGAGACT 60.081 45.833 0.00 0.00 35.96 3.24
2265 2311 4.184629 GGACATAACCATGACAGTGAGAC 58.815 47.826 0.00 0.00 35.96 3.36
2266 2312 3.837731 TGGACATAACCATGACAGTGAGA 59.162 43.478 0.00 0.00 35.96 3.27
2267 2313 4.206477 TGGACATAACCATGACAGTGAG 57.794 45.455 0.00 0.00 35.96 3.51
2277 2323 3.812156 ACGATCGAATGGACATAACCA 57.188 42.857 24.34 0.00 44.41 3.67
2278 2324 3.493503 GGAACGATCGAATGGACATAACC 59.506 47.826 24.34 1.47 0.00 2.85
2279 2325 4.369182 AGGAACGATCGAATGGACATAAC 58.631 43.478 24.34 0.00 0.00 1.89
2280 2326 4.341235 AGAGGAACGATCGAATGGACATAA 59.659 41.667 24.34 0.00 0.00 1.90
2281 2327 3.889538 AGAGGAACGATCGAATGGACATA 59.110 43.478 24.34 0.00 0.00 2.29
2282 2328 2.695666 AGAGGAACGATCGAATGGACAT 59.304 45.455 24.34 3.65 0.00 3.06
2283 2329 2.100197 AGAGGAACGATCGAATGGACA 58.900 47.619 24.34 0.00 0.00 4.02
2284 2330 2.873133 AGAGGAACGATCGAATGGAC 57.127 50.000 24.34 8.32 0.00 4.02
2285 2331 4.994907 TTAAGAGGAACGATCGAATGGA 57.005 40.909 24.34 0.00 0.00 3.41
2286 2332 6.257849 TCATTTTAAGAGGAACGATCGAATGG 59.742 38.462 24.34 2.81 0.00 3.16
2287 2333 7.119997 GTCATTTTAAGAGGAACGATCGAATG 58.880 38.462 24.34 15.92 0.00 2.67
2288 2334 6.816640 TGTCATTTTAAGAGGAACGATCGAAT 59.183 34.615 24.34 10.21 0.00 3.34
2289 2335 6.160684 TGTCATTTTAAGAGGAACGATCGAA 58.839 36.000 24.34 1.11 0.00 3.71
2290 2336 5.716094 TGTCATTTTAAGAGGAACGATCGA 58.284 37.500 24.34 0.00 0.00 3.59
2291 2337 6.589830 ATGTCATTTTAAGAGGAACGATCG 57.410 37.500 14.88 14.88 0.00 3.69
2292 2338 8.450964 TGAAATGTCATTTTAAGAGGAACGATC 58.549 33.333 12.04 0.00 31.47 3.69
2293 2339 8.237267 GTGAAATGTCATTTTAAGAGGAACGAT 58.763 33.333 12.04 0.00 35.80 3.73
2294 2340 7.444183 AGTGAAATGTCATTTTAAGAGGAACGA 59.556 33.333 12.04 0.00 35.80 3.85
2295 2341 7.535258 CAGTGAAATGTCATTTTAAGAGGAACG 59.465 37.037 12.04 0.00 35.80 3.95
2296 2342 7.327032 GCAGTGAAATGTCATTTTAAGAGGAAC 59.673 37.037 12.04 0.00 35.80 3.62
2297 2343 7.370383 GCAGTGAAATGTCATTTTAAGAGGAA 58.630 34.615 12.04 0.00 35.80 3.36
2298 2344 6.071952 GGCAGTGAAATGTCATTTTAAGAGGA 60.072 38.462 12.04 0.00 35.80 3.71
2299 2345 6.071728 AGGCAGTGAAATGTCATTTTAAGAGG 60.072 38.462 12.04 2.72 35.80 3.69
2300 2346 6.805271 CAGGCAGTGAAATGTCATTTTAAGAG 59.195 38.462 12.04 3.53 35.80 2.85
2301 2347 6.265196 ACAGGCAGTGAAATGTCATTTTAAGA 59.735 34.615 12.04 0.00 35.80 2.10
2302 2348 6.449698 ACAGGCAGTGAAATGTCATTTTAAG 58.550 36.000 12.04 5.98 35.80 1.85
2303 2349 6.403866 ACAGGCAGTGAAATGTCATTTTAA 57.596 33.333 12.04 1.93 35.80 1.52
2304 2350 6.215121 CAACAGGCAGTGAAATGTCATTTTA 58.785 36.000 12.04 5.50 35.80 1.52
2305 2351 4.942761 ACAGGCAGTGAAATGTCATTTT 57.057 36.364 12.04 0.00 35.80 1.82
2306 2352 4.501915 CCAACAGGCAGTGAAATGTCATTT 60.502 41.667 10.63 10.63 35.80 2.32
2307 2353 3.006110 CCAACAGGCAGTGAAATGTCATT 59.994 43.478 0.00 0.00 35.80 2.57
2308 2354 2.559668 CCAACAGGCAGTGAAATGTCAT 59.440 45.455 0.00 0.00 35.80 3.06
2309 2355 1.955778 CCAACAGGCAGTGAAATGTCA 59.044 47.619 0.00 0.00 0.00 3.58
2310 2356 2.229792 TCCAACAGGCAGTGAAATGTC 58.770 47.619 0.00 0.00 0.00 3.06
2311 2357 2.363306 TCCAACAGGCAGTGAAATGT 57.637 45.000 0.00 0.00 0.00 2.71
2312 2358 3.947910 AATCCAACAGGCAGTGAAATG 57.052 42.857 0.00 0.00 0.00 2.32
2313 2359 4.666512 ACTAATCCAACAGGCAGTGAAAT 58.333 39.130 0.00 0.00 0.00 2.17
2314 2360 4.098914 ACTAATCCAACAGGCAGTGAAA 57.901 40.909 0.00 0.00 0.00 2.69
2315 2361 3.788227 ACTAATCCAACAGGCAGTGAA 57.212 42.857 0.00 0.00 0.00 3.18
2316 2362 3.788227 AACTAATCCAACAGGCAGTGA 57.212 42.857 0.00 0.00 0.00 3.41
2317 2363 5.003804 ACTAAACTAATCCAACAGGCAGTG 58.996 41.667 0.00 0.00 0.00 3.66
2318 2364 5.242795 ACTAAACTAATCCAACAGGCAGT 57.757 39.130 0.00 0.00 0.00 4.40
2319 2365 7.865706 AATACTAAACTAATCCAACAGGCAG 57.134 36.000 0.00 0.00 0.00 4.85
2320 2366 7.885922 TGAAATACTAAACTAATCCAACAGGCA 59.114 33.333 0.00 0.00 0.00 4.75
2321 2367 8.276252 TGAAATACTAAACTAATCCAACAGGC 57.724 34.615 0.00 0.00 0.00 4.85
2322 2368 9.667107 TCTGAAATACTAAACTAATCCAACAGG 57.333 33.333 0.00 0.00 0.00 4.00
2360 2406 8.821894 GCTTCTATATGTCTTCTACCTTTTGTG 58.178 37.037 0.00 0.00 0.00 3.33
2361 2407 8.540388 TGCTTCTATATGTCTTCTACCTTTTGT 58.460 33.333 0.00 0.00 0.00 2.83
2362 2408 8.948631 TGCTTCTATATGTCTTCTACCTTTTG 57.051 34.615 0.00 0.00 0.00 2.44
2363 2409 9.553064 CATGCTTCTATATGTCTTCTACCTTTT 57.447 33.333 0.00 0.00 0.00 2.27
2364 2410 8.928448 TCATGCTTCTATATGTCTTCTACCTTT 58.072 33.333 0.00 0.00 0.00 3.11
2365 2411 8.484214 TCATGCTTCTATATGTCTTCTACCTT 57.516 34.615 0.00 0.00 0.00 3.50
2366 2412 8.530311 CATCATGCTTCTATATGTCTTCTACCT 58.470 37.037 0.00 0.00 0.00 3.08
2367 2413 8.310382 ACATCATGCTTCTATATGTCTTCTACC 58.690 37.037 0.00 0.00 0.00 3.18
2368 2414 9.703892 AACATCATGCTTCTATATGTCTTCTAC 57.296 33.333 0.00 0.00 30.71 2.59
2369 2415 9.702494 CAACATCATGCTTCTATATGTCTTCTA 57.298 33.333 0.00 0.00 30.71 2.10
2370 2416 8.427276 TCAACATCATGCTTCTATATGTCTTCT 58.573 33.333 0.00 0.00 30.71 2.85
2371 2417 8.494347 GTCAACATCATGCTTCTATATGTCTTC 58.506 37.037 0.00 0.00 30.71 2.87
2372 2418 7.989170 TGTCAACATCATGCTTCTATATGTCTT 59.011 33.333 0.00 0.00 30.71 3.01
2373 2419 7.503549 TGTCAACATCATGCTTCTATATGTCT 58.496 34.615 0.00 0.00 30.71 3.41
2374 2420 7.719778 TGTCAACATCATGCTTCTATATGTC 57.280 36.000 0.00 0.00 30.71 3.06
2375 2421 8.687292 ATTGTCAACATCATGCTTCTATATGT 57.313 30.769 0.00 0.00 32.32 2.29
2376 2422 9.961265 AAATTGTCAACATCATGCTTCTATATG 57.039 29.630 0.00 0.00 0.00 1.78
2379 2425 9.793252 GTAAAATTGTCAACATCATGCTTCTAT 57.207 29.630 0.00 0.00 0.00 1.98
2380 2426 9.013229 AGTAAAATTGTCAACATCATGCTTCTA 57.987 29.630 0.00 0.00 0.00 2.10
2381 2427 7.889469 AGTAAAATTGTCAACATCATGCTTCT 58.111 30.769 0.00 0.00 0.00 2.85
2382 2428 9.282247 CTAGTAAAATTGTCAACATCATGCTTC 57.718 33.333 0.00 0.00 0.00 3.86
2383 2429 9.013229 TCTAGTAAAATTGTCAACATCATGCTT 57.987 29.630 0.00 0.00 0.00 3.91
2384 2430 8.565896 TCTAGTAAAATTGTCAACATCATGCT 57.434 30.769 0.00 0.00 0.00 3.79
2385 2431 9.793252 ATTCTAGTAAAATTGTCAACATCATGC 57.207 29.630 0.00 0.00 0.00 4.06
2405 2451 9.274065 GCGTACAGGAAAAATTGTTAATTCTAG 57.726 33.333 0.00 0.00 0.00 2.43
2406 2452 8.784994 TGCGTACAGGAAAAATTGTTAATTCTA 58.215 29.630 0.00 0.00 0.00 2.10
2407 2453 7.653647 TGCGTACAGGAAAAATTGTTAATTCT 58.346 30.769 0.00 0.00 0.00 2.40
2408 2454 7.861176 TGCGTACAGGAAAAATTGTTAATTC 57.139 32.000 0.00 0.00 0.00 2.17
2409 2455 8.649973 TTTGCGTACAGGAAAAATTGTTAATT 57.350 26.923 0.00 0.00 37.22 1.40
2410 2456 8.649973 TTTTGCGTACAGGAAAAATTGTTAAT 57.350 26.923 12.15 0.00 45.11 1.40
2419 2465 8.325421 TCTATATGTTTTTGCGTACAGGAAAA 57.675 30.769 11.06 11.06 46.14 2.29
2420 2466 7.908827 TCTATATGTTTTTGCGTACAGGAAA 57.091 32.000 0.00 0.00 38.42 3.13
2421 2467 7.413657 GCTTCTATATGTTTTTGCGTACAGGAA 60.414 37.037 0.00 0.00 0.00 3.36
2422 2468 6.036735 GCTTCTATATGTTTTTGCGTACAGGA 59.963 38.462 0.00 0.00 0.00 3.86
2423 2469 6.183360 TGCTTCTATATGTTTTTGCGTACAGG 60.183 38.462 0.00 0.00 0.00 4.00
2424 2470 6.771076 TGCTTCTATATGTTTTTGCGTACAG 58.229 36.000 0.00 0.00 0.00 2.74
2425 2471 6.729391 TGCTTCTATATGTTTTTGCGTACA 57.271 33.333 0.00 0.00 0.00 2.90
2426 2472 7.406553 TCATGCTTCTATATGTTTTTGCGTAC 58.593 34.615 0.00 0.00 0.00 3.67
2427 2473 7.546778 TCATGCTTCTATATGTTTTTGCGTA 57.453 32.000 0.00 0.00 0.00 4.42
2428 2474 6.435430 TCATGCTTCTATATGTTTTTGCGT 57.565 33.333 0.00 0.00 0.00 5.24
2429 2475 6.914215 ACATCATGCTTCTATATGTTTTTGCG 59.086 34.615 0.00 0.00 0.00 4.85
2430 2476 8.537223 CAACATCATGCTTCTATATGTTTTTGC 58.463 33.333 4.44 0.00 38.39 3.68
2431 2477 8.537223 GCAACATCATGCTTCTATATGTTTTTG 58.463 33.333 4.44 0.00 43.06 2.44
2432 2478 8.638685 GCAACATCATGCTTCTATATGTTTTT 57.361 30.769 4.44 0.00 43.06 1.94
2447 2493 4.467769 AGATAAAGGGGAGCAACATCATG 58.532 43.478 0.00 0.00 0.00 3.07
2451 2497 3.525199 ACAGAGATAAAGGGGAGCAACAT 59.475 43.478 0.00 0.00 0.00 2.71
2453 2499 3.636153 ACAGAGATAAAGGGGAGCAAC 57.364 47.619 0.00 0.00 0.00 4.17
2466 2512 5.978814 ACTATACTTTGCCGAAACAGAGAT 58.021 37.500 0.00 0.00 0.00 2.75
2478 2524 8.058915 CAGAGAAAATTAGCGACTATACTTTGC 58.941 37.037 0.00 0.00 0.00 3.68
2479 2525 9.088512 ACAGAGAAAATTAGCGACTATACTTTG 57.911 33.333 0.00 0.00 0.00 2.77
2507 2553 4.214310 TGACTGCCTGGAATTTCTGAAAA 58.786 39.130 6.95 0.00 0.00 2.29
2556 2602 9.483916 CAGTATAATCCACCGAAATATGTACAA 57.516 33.333 0.00 0.00 0.00 2.41
2559 2605 9.701098 GTTCAGTATAATCCACCGAAATATGTA 57.299 33.333 0.00 0.00 0.00 2.29
2585 2631 5.392767 ACAGGCATAATATACAGGACTCG 57.607 43.478 0.00 0.00 0.00 4.18
2586 2632 8.368668 ACTAAACAGGCATAATATACAGGACTC 58.631 37.037 0.00 0.00 0.00 3.36
2629 2675 8.347771 CACCAAATGATATCAACTGAAGGTATG 58.652 37.037 9.99 0.00 0.00 2.39
2630 2676 7.503566 CCACCAAATGATATCAACTGAAGGTAT 59.496 37.037 9.99 0.00 0.00 2.73
2631 2677 6.828273 CCACCAAATGATATCAACTGAAGGTA 59.172 38.462 9.99 0.00 0.00 3.08
2632 2678 5.653769 CCACCAAATGATATCAACTGAAGGT 59.346 40.000 9.99 9.23 0.00 3.50
2633 2679 5.068198 CCCACCAAATGATATCAACTGAAGG 59.932 44.000 9.99 13.07 0.00 3.46
2675 2726 7.678218 GCATTGACTGGACAATCTATCAAGTTC 60.678 40.741 0.00 0.00 38.25 3.01
2699 2750 4.916831 CGTTAACAATCAAATTCAGCTGCA 59.083 37.500 9.47 0.00 0.00 4.41
2706 2757 7.078228 AGCAGAGTTCGTTAACAATCAAATTC 58.922 34.615 6.39 0.00 38.12 2.17
2708 2759 6.560253 AGCAGAGTTCGTTAACAATCAAAT 57.440 33.333 6.39 0.00 38.12 2.32
2714 2765 4.067972 AGGAAGCAGAGTTCGTTAACAA 57.932 40.909 6.39 0.00 38.12 2.83
2753 2804 7.391148 TGTATTTTCCTACATGAAGCTTTCC 57.609 36.000 0.00 0.00 0.00 3.13
2767 2818 8.697507 AAAAGAACAGAGTGATGTATTTTCCT 57.302 30.769 0.00 0.00 31.64 3.36
2881 2932 7.285401 ACAAAACACATCTTATTGGAAGTGAGT 59.715 33.333 6.81 0.00 38.03 3.41
3031 3082 9.227777 GTAGGTTTTATTTCTGGCTTCTTCTTA 57.772 33.333 0.00 0.00 0.00 2.10
3218 3272 4.704965 AGTTGAGACACTTACTTTGGGAC 58.295 43.478 0.00 0.00 0.00 4.46
3226 3280 9.310716 ACTTTGTACTAAAGTTGAGACACTTAC 57.689 33.333 14.04 0.00 37.18 2.34
3267 3336 3.818773 CACTCCGTCCCAAAATAAGTGTT 59.181 43.478 0.00 0.00 0.00 3.32
3325 3394 3.057806 TGCATCTGAGCAATTGACACAAG 60.058 43.478 10.34 0.00 42.46 3.16
3375 3444 6.963796 ACAACTTTGAAATAGCTTGACTCAG 58.036 36.000 0.00 0.00 0.00 3.35
3376 3445 6.942532 ACAACTTTGAAATAGCTTGACTCA 57.057 33.333 0.00 0.00 0.00 3.41
3377 3446 8.089115 AGTACAACTTTGAAATAGCTTGACTC 57.911 34.615 0.00 0.00 0.00 3.36
3378 3447 9.555727 TTAGTACAACTTTGAAATAGCTTGACT 57.444 29.630 0.00 0.00 0.00 3.41
3388 3457 9.296400 GCAGACAAATTTAGTACAACTTTGAAA 57.704 29.630 18.51 2.01 32.54 2.69
3389 3458 8.682710 AGCAGACAAATTTAGTACAACTTTGAA 58.317 29.630 18.51 0.00 32.54 2.69
3390 3459 8.220755 AGCAGACAAATTTAGTACAACTTTGA 57.779 30.769 18.51 0.00 32.54 2.69
3391 3460 9.599322 CTAGCAGACAAATTTAGTACAACTTTG 57.401 33.333 13.86 13.86 33.98 2.77
3392 3461 9.555727 TCTAGCAGACAAATTTAGTACAACTTT 57.444 29.630 0.00 0.00 0.00 2.66
3393 3462 9.555727 TTCTAGCAGACAAATTTAGTACAACTT 57.444 29.630 0.00 0.00 0.00 2.66
3394 3463 9.726438 ATTCTAGCAGACAAATTTAGTACAACT 57.274 29.630 0.00 0.00 0.00 3.16
3400 3469 9.155975 CAGTGTATTCTAGCAGACAAATTTAGT 57.844 33.333 0.00 0.00 0.00 2.24
3401 3470 8.119226 GCAGTGTATTCTAGCAGACAAATTTAG 58.881 37.037 0.00 0.00 0.00 1.85
3402 3471 7.065803 GGCAGTGTATTCTAGCAGACAAATTTA 59.934 37.037 0.00 0.00 0.00 1.40
3403 3472 6.127897 GGCAGTGTATTCTAGCAGACAAATTT 60.128 38.462 0.00 0.00 0.00 1.82
3404 3473 5.355350 GGCAGTGTATTCTAGCAGACAAATT 59.645 40.000 0.00 0.00 0.00 1.82
3405 3474 4.878397 GGCAGTGTATTCTAGCAGACAAAT 59.122 41.667 0.00 0.00 0.00 2.32
3406 3475 4.253685 GGCAGTGTATTCTAGCAGACAAA 58.746 43.478 0.00 0.00 0.00 2.83
3411 3480 4.194640 ACAATGGCAGTGTATTCTAGCAG 58.805 43.478 20.17 0.00 0.00 4.24
3530 3604 9.212641 GCTGATATCACTACACATATCACAAAT 57.787 33.333 0.00 0.00 37.17 2.32
3537 3611 6.494835 TCACCAGCTGATATCACTACACATAT 59.505 38.462 17.39 0.00 0.00 1.78
3572 3646 5.437289 TTCAACACACATGTCATTCCTTC 57.563 39.130 0.00 0.00 38.45 3.46
3612 3687 1.355381 TCTCCTACGGTCCAACCTACA 59.645 52.381 0.00 0.00 35.66 2.74
3636 3711 0.782384 GCGCACATATACCACTACGC 59.218 55.000 0.30 0.00 38.17 4.42
3644 3719 6.019075 TCACAAGTAATCAAGCGCACATATAC 60.019 38.462 11.47 7.37 0.00 1.47
3653 3728 7.171508 ACCACATATATCACAAGTAATCAAGCG 59.828 37.037 0.00 0.00 0.00 4.68
3732 3810 7.033185 CCATTTAGCCATGTTTTAACCTACAC 58.967 38.462 0.00 0.00 0.00 2.90
3734 3812 7.122204 ACTCCATTTAGCCATGTTTTAACCTAC 59.878 37.037 0.00 0.00 0.00 3.18
3758 3836 8.516234 TGTGTATCCGTTTATTTTATTTGCACT 58.484 29.630 0.00 0.00 0.00 4.40
3785 3863 7.020827 TCAGGACACTATTTCTCATTTCCTT 57.979 36.000 0.00 0.00 29.44 3.36
3801 3879 2.315386 GCCGTTCGGTTCAGGACAC 61.315 63.158 12.81 0.00 0.00 3.67
3840 3918 4.037327 CGCAGTATCATCAGGAGAGAGAAA 59.963 45.833 0.00 0.00 0.00 2.52
3914 3992 2.823154 GCCCAGGCAGTACAAAAATACA 59.177 45.455 3.12 0.00 41.49 2.29
3987 4065 5.763698 AGCCAAGAGTTACAGGAAAGTAAAC 59.236 40.000 0.00 0.00 35.88 2.01
4239 4317 7.041848 CCAAGATTTTCCAGGAATTCACAAAAC 60.042 37.037 1.58 0.00 0.00 2.43
4245 4323 9.189156 CTATAACCAAGATTTTCCAGGAATTCA 57.811 33.333 1.58 0.00 0.00 2.57
4346 4424 5.341872 TGAAATTTTGATCCCGCATGAAT 57.658 34.783 0.00 0.00 0.00 2.57
4350 4428 4.388469 CGTTTTGAAATTTTGATCCCGCAT 59.612 37.500 0.00 0.00 0.00 4.73
4426 4505 7.437713 ACTACCATCTCATTGTAGGATTTGA 57.562 36.000 0.00 0.00 37.00 2.69
4435 4524 9.060347 CAAATGCTATTACTACCATCTCATTGT 57.940 33.333 0.00 0.00 0.00 2.71
4436 4525 9.276590 TCAAATGCTATTACTACCATCTCATTG 57.723 33.333 0.00 0.00 0.00 2.82
4437 4526 9.499479 CTCAAATGCTATTACTACCATCTCATT 57.501 33.333 0.00 0.00 0.00 2.57
4438 4527 7.605691 GCTCAAATGCTATTACTACCATCTCAT 59.394 37.037 0.00 0.00 0.00 2.90
4439 4528 6.931281 GCTCAAATGCTATTACTACCATCTCA 59.069 38.462 0.00 0.00 0.00 3.27
4440 4529 6.090088 CGCTCAAATGCTATTACTACCATCTC 59.910 42.308 0.00 0.00 0.00 2.75
4441 4530 5.928839 CGCTCAAATGCTATTACTACCATCT 59.071 40.000 0.00 0.00 0.00 2.90
4442 4531 5.389935 GCGCTCAAATGCTATTACTACCATC 60.390 44.000 0.00 0.00 0.00 3.51
4443 4532 4.452455 GCGCTCAAATGCTATTACTACCAT 59.548 41.667 0.00 0.00 0.00 3.55
4444 4533 3.807622 GCGCTCAAATGCTATTACTACCA 59.192 43.478 0.00 0.00 0.00 3.25
4445 4534 3.807622 TGCGCTCAAATGCTATTACTACC 59.192 43.478 9.73 0.00 0.00 3.18
4446 4535 4.270084 TGTGCGCTCAAATGCTATTACTAC 59.730 41.667 10.16 0.00 0.00 2.73
4449 4538 3.673746 TGTGCGCTCAAATGCTATTAC 57.326 42.857 10.16 0.00 0.00 1.89
4503 4637 8.653338 TGTACGCTCTGAAAACAAATATAAGAC 58.347 33.333 0.00 0.00 0.00 3.01
4625 4763 8.560374 GGCAGGTTATCAAGTAAAGATATTGAC 58.440 37.037 0.00 0.00 35.89 3.18
4626 4764 8.271458 TGGCAGGTTATCAAGTAAAGATATTGA 58.729 33.333 0.00 0.00 37.36 2.57
4712 4859 9.181805 ACGAGTCATTCATAATTTATACAGACG 57.818 33.333 0.00 0.00 0.00 4.18
4755 4903 3.680196 GCCGTAAGAGGAGAAGCAAAGAT 60.680 47.826 0.00 0.00 43.02 2.40
4757 4905 2.003301 GCCGTAAGAGGAGAAGCAAAG 58.997 52.381 0.00 0.00 43.02 2.77
4866 5014 3.686916 GGAGAAAGGTTCTACTGCTGT 57.313 47.619 0.66 0.66 40.87 4.40
4974 5122 4.556942 TCAATAGCTCAATCCATTTGCG 57.443 40.909 0.00 0.00 35.16 4.85
4996 5144 2.905736 TCATCCCACAAGAGATGACACA 59.094 45.455 0.00 0.00 42.98 3.72
5002 5150 6.760440 AGTGATAATCATCCCACAAGAGAT 57.240 37.500 0.00 0.00 32.35 2.75
5059 5207 2.354821 ACGGCGGCAAAATCTTAGAATC 59.645 45.455 13.24 0.00 0.00 2.52
5065 5213 1.288752 CCAACGGCGGCAAAATCTT 59.711 52.632 13.24 0.00 0.00 2.40
5082 5230 6.120220 AGGAACTATACTGGTTATGTTTGCC 58.880 40.000 0.00 0.00 36.02 4.52
5088 5236 9.667107 TTCAAAAGAGGAACTATACTGGTTATG 57.333 33.333 0.00 0.00 41.55 1.90
5093 5241 6.934645 TGTGTTCAAAAGAGGAACTATACTGG 59.065 38.462 6.80 0.00 43.84 4.00
5120 5268 7.368833 GCGGTGTACTGAACTATACTGATTAT 58.631 38.462 0.00 0.00 0.00 1.28
5164 5312 3.067320 CAGCAGCAGCACAGTAGTAGATA 59.933 47.826 3.17 0.00 45.49 1.98
5245 5421 1.400629 CCAACTGCATCTTTCTGCACG 60.401 52.381 0.00 0.00 46.76 5.34
5276 5452 2.199236 CCGTGCCCTACTTTTATCGAC 58.801 52.381 0.00 0.00 0.00 4.20
5278 5454 0.935196 GCCGTGCCCTACTTTTATCG 59.065 55.000 0.00 0.00 0.00 2.92
5279 5455 2.327200 AGCCGTGCCCTACTTTTATC 57.673 50.000 0.00 0.00 0.00 1.75
5280 5456 2.770232 AGTAGCCGTGCCCTACTTTTAT 59.230 45.455 0.00 0.00 41.97 1.40
5281 5457 2.181975 AGTAGCCGTGCCCTACTTTTA 58.818 47.619 0.00 0.00 41.97 1.52
5282 5458 0.981943 AGTAGCCGTGCCCTACTTTT 59.018 50.000 0.00 0.00 41.97 2.27
5348 5537 8.028354 TGCAAATTGAATGACACGAAGAATATT 58.972 29.630 0.00 0.00 0.00 1.28
5353 5542 4.827304 TGCAAATTGAATGACACGAAGA 57.173 36.364 0.00 0.00 0.00 2.87
5402 5592 8.182227 TGTGTTGACATTTACGTACATTTTCAA 58.818 29.630 9.81 9.81 0.00 2.69
5422 5625 5.257108 GTTGTTTGTGCAATGAATGTGTTG 58.743 37.500 0.00 0.00 0.00 3.33
5431 5635 2.475864 CCCATTCGTTGTTTGTGCAATG 59.524 45.455 0.00 0.00 36.87 2.82
5460 5664 4.628333 TGCTGCTACTGGATTTACGTTTAC 59.372 41.667 0.00 0.00 0.00 2.01
5478 5684 0.106521 ATTGGTTGGTGGTTTGCTGC 59.893 50.000 0.00 0.00 0.00 5.25
5488 5694 3.066481 GCATTGTTTTTGCATTGGTTGGT 59.934 39.130 0.00 0.00 39.90 3.67
5502 5709 8.992073 GTTTTATTTCCAGAATCTGCATTGTTT 58.008 29.630 4.40 0.00 0.00 2.83
5523 5730 6.462347 GCAAAATTTCCTCAGTCTGGGTTTTA 60.462 38.462 0.00 0.00 0.00 1.52
5528 5735 2.892852 TGCAAAATTTCCTCAGTCTGGG 59.107 45.455 0.00 0.00 0.00 4.45
5534 5741 6.458210 ACCAAGTAATGCAAAATTTCCTCAG 58.542 36.000 0.00 0.00 0.00 3.35
5543 5752 6.058833 TCTGTCACTACCAAGTAATGCAAAA 58.941 36.000 0.00 0.00 33.48 2.44
5554 5763 1.339055 GCCTGCATCTGTCACTACCAA 60.339 52.381 0.00 0.00 0.00 3.67
5592 5801 2.947652 CTCCATTACCTGAACCATGCAG 59.052 50.000 0.00 0.00 0.00 4.41
5595 5804 3.947834 GGAACTCCATTACCTGAACCATG 59.052 47.826 0.00 0.00 35.64 3.66
5713 5922 3.538591 TGCTCTTAACGGTCTCTATCGA 58.461 45.455 0.00 0.00 32.06 3.59
5875 6087 0.398318 AAGCAGGGCGAGAAACTCTT 59.602 50.000 0.00 0.00 0.00 2.85
5880 6092 0.396435 TTCTGAAGCAGGGCGAGAAA 59.604 50.000 0.00 0.00 31.51 2.52
5881 6093 0.320771 GTTCTGAAGCAGGGCGAGAA 60.321 55.000 0.00 0.00 31.51 2.87
5885 6097 0.603707 TCTTGTTCTGAAGCAGGGCG 60.604 55.000 0.00 0.00 31.51 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.