Multiple sequence alignment - TraesCS2A01G372100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G372100 chr2A 100.000 3026 0 0 1 3026 614524348 614521323 0.000000e+00 5589.0
1 TraesCS2A01G372100 chr2A 92.949 312 22 0 310 621 68129332 68129021 3.560000e-124 455.0
2 TraesCS2A01G372100 chr2A 81.982 111 4 9 701 811 63359075 63359169 2.500000e-11 80.5
3 TraesCS2A01G372100 chr2D 94.205 2364 83 18 698 3026 473088316 473085972 0.000000e+00 3557.0
4 TraesCS2A01G372100 chr2B 93.432 2101 68 27 698 2751 552341362 552339285 0.000000e+00 3051.0
5 TraesCS2A01G372100 chr2B 92.476 319 24 0 300 618 590002371 590002689 9.890000e-125 457.0
6 TraesCS2A01G372100 chr2B 86.486 296 20 7 2743 3026 552339133 552338846 1.050000e-79 307.0
7 TraesCS2A01G372100 chr7D 94.444 306 17 0 1 306 63385831 63385526 3.530000e-129 472.0
8 TraesCS2A01G372100 chr3D 94.118 306 18 0 1 306 481914727 481915032 1.640000e-127 466.0
9 TraesCS2A01G372100 chr7A 93.269 312 21 0 308 619 671404604 671404915 7.640000e-126 460.0
10 TraesCS2A01G372100 chr7A 92.476 319 24 0 301 619 345229724 345230042 9.890000e-125 457.0
11 TraesCS2A01G372100 chr3B 93.269 312 21 0 307 618 23694784 23694473 7.640000e-126 460.0
12 TraesCS2A01G372100 chr4D 93.791 306 18 1 1 306 63929818 63930122 2.750000e-125 459.0
13 TraesCS2A01G372100 chr4D 75.262 667 129 27 1327 1978 328185284 328184639 4.940000e-73 285.0
14 TraesCS2A01G372100 chr4B 93.485 307 20 0 310 616 385922673 385922979 9.890000e-125 457.0
15 TraesCS2A01G372100 chr1A 93.485 307 20 0 310 616 261368396 261368702 9.890000e-125 457.0
16 TraesCS2A01G372100 chr1A 92.994 314 20 2 301 613 282546539 282546227 9.890000e-125 457.0
17 TraesCS2A01G372100 chr7B 91.900 321 26 0 307 627 462882904 462883224 1.650000e-122 449.0
18 TraesCS2A01G372100 chr7B 77.813 631 124 16 1355 1977 119700871 119701493 2.850000e-100 375.0
19 TraesCS2A01G372100 chr5A 94.545 275 13 2 1 274 442349954 442350227 1.000000e-114 424.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G372100 chr2A 614521323 614524348 3025 True 5589 5589 100.000 1 3026 1 chr2A.!!$R2 3025
1 TraesCS2A01G372100 chr2D 473085972 473088316 2344 True 3557 3557 94.205 698 3026 1 chr2D.!!$R1 2328
2 TraesCS2A01G372100 chr2B 552338846 552341362 2516 True 1679 3051 89.959 698 3026 2 chr2B.!!$R1 2328
3 TraesCS2A01G372100 chr4D 328184639 328185284 645 True 285 285 75.262 1327 1978 1 chr4D.!!$R1 651
4 TraesCS2A01G372100 chr7B 119700871 119701493 622 False 375 375 77.813 1355 1977 1 chr7B.!!$F1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.038618 ACGACGTTGTGCTGCTATCA 60.039 50.0 7.89 0.0 0.0 2.15 F
664 665 0.168788 ATTGGCACGCAAAGATCACG 59.831 50.0 0.00 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1434 1450 3.736224 TAGAGGACGCGGGGGACT 61.736 66.667 12.47 5.7 0.0 3.85 R
2514 2574 0.121608 TCTAAGCCCCCACCCCTTAA 59.878 55.000 0.00 0.0 0.0 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.469309 TTGAATCTTCAAATCTGGAAAGTCTT 57.531 30.769 2.94 0.00 43.62 3.01
29 30 7.879070 TGAATCTTCAAATCTGGAAAGTCTTG 58.121 34.615 0.00 0.00 33.55 3.02
30 31 6.830873 ATCTTCAAATCTGGAAAGTCTTGG 57.169 37.500 0.00 0.00 0.00 3.61
31 32 5.694995 TCTTCAAATCTGGAAAGTCTTGGT 58.305 37.500 0.00 0.00 0.00 3.67
32 33 5.532406 TCTTCAAATCTGGAAAGTCTTGGTG 59.468 40.000 0.00 0.00 0.00 4.17
33 34 4.792068 TCAAATCTGGAAAGTCTTGGTGT 58.208 39.130 0.00 0.00 0.00 4.16
34 35 4.821805 TCAAATCTGGAAAGTCTTGGTGTC 59.178 41.667 0.00 0.00 0.00 3.67
35 36 2.930826 TCTGGAAAGTCTTGGTGTCC 57.069 50.000 0.00 0.00 0.00 4.02
36 37 2.408565 TCTGGAAAGTCTTGGTGTCCT 58.591 47.619 3.31 0.00 0.00 3.85
37 38 2.368875 TCTGGAAAGTCTTGGTGTCCTC 59.631 50.000 3.31 0.00 0.00 3.71
38 39 2.104792 CTGGAAAGTCTTGGTGTCCTCA 59.895 50.000 3.31 0.00 0.00 3.86
39 40 2.104792 TGGAAAGTCTTGGTGTCCTCAG 59.895 50.000 3.31 0.00 0.00 3.35
40 41 2.368875 GGAAAGTCTTGGTGTCCTCAGA 59.631 50.000 0.00 0.00 0.00 3.27
41 42 3.394719 GAAAGTCTTGGTGTCCTCAGAC 58.605 50.000 9.25 9.25 43.83 3.51
42 43 2.390225 AGTCTTGGTGTCCTCAGACT 57.610 50.000 12.29 12.29 43.91 3.24
43 44 1.967066 AGTCTTGGTGTCCTCAGACTG 59.033 52.381 15.37 0.00 40.68 3.51
44 45 1.689273 GTCTTGGTGTCCTCAGACTGT 59.311 52.381 1.59 0.00 43.91 3.55
45 46 2.103263 GTCTTGGTGTCCTCAGACTGTT 59.897 50.000 1.59 0.00 43.91 3.16
46 47 2.365617 TCTTGGTGTCCTCAGACTGTTC 59.634 50.000 1.59 0.00 43.91 3.18
47 48 2.088104 TGGTGTCCTCAGACTGTTCT 57.912 50.000 1.59 0.00 43.91 3.01
48 49 3.238788 TGGTGTCCTCAGACTGTTCTA 57.761 47.619 1.59 0.00 43.91 2.10
49 50 2.891580 TGGTGTCCTCAGACTGTTCTAC 59.108 50.000 1.59 0.00 43.91 2.59
50 51 2.891580 GGTGTCCTCAGACTGTTCTACA 59.108 50.000 1.59 1.03 43.91 2.74
60 61 1.714794 CTGTTCTACAGCCGTCAAGG 58.285 55.000 0.00 0.00 39.62 3.61
61 62 1.272490 CTGTTCTACAGCCGTCAAGGA 59.728 52.381 0.00 0.00 39.62 3.36
62 63 1.272490 TGTTCTACAGCCGTCAAGGAG 59.728 52.381 0.00 0.00 45.00 3.69
63 64 0.895530 TTCTACAGCCGTCAAGGAGG 59.104 55.000 0.00 0.00 45.00 4.30
64 65 0.251653 TCTACAGCCGTCAAGGAGGT 60.252 55.000 0.00 0.00 45.00 3.85
65 66 0.108615 CTACAGCCGTCAAGGAGGTG 60.109 60.000 0.00 0.00 45.00 4.00
66 67 0.541063 TACAGCCGTCAAGGAGGTGA 60.541 55.000 0.00 0.00 45.00 4.02
67 68 1.371183 CAGCCGTCAAGGAGGTGAA 59.629 57.895 0.00 0.00 45.00 3.18
68 69 0.671781 CAGCCGTCAAGGAGGTGAAG 60.672 60.000 0.00 0.00 45.00 3.02
69 70 1.376037 GCCGTCAAGGAGGTGAAGG 60.376 63.158 3.17 3.17 46.43 3.46
70 71 1.376037 CCGTCAAGGAGGTGAAGGC 60.376 63.158 0.00 0.00 45.00 4.35
71 72 1.371183 CGTCAAGGAGGTGAAGGCA 59.629 57.895 0.00 0.00 0.00 4.75
72 73 0.671781 CGTCAAGGAGGTGAAGGCAG 60.672 60.000 0.00 0.00 0.00 4.85
73 74 0.322008 GTCAAGGAGGTGAAGGCAGG 60.322 60.000 0.00 0.00 0.00 4.85
74 75 0.473694 TCAAGGAGGTGAAGGCAGGA 60.474 55.000 0.00 0.00 0.00 3.86
75 76 0.401738 CAAGGAGGTGAAGGCAGGAA 59.598 55.000 0.00 0.00 0.00 3.36
76 77 1.149101 AAGGAGGTGAAGGCAGGAAA 58.851 50.000 0.00 0.00 0.00 3.13
77 78 0.695347 AGGAGGTGAAGGCAGGAAAG 59.305 55.000 0.00 0.00 0.00 2.62
78 79 0.322906 GGAGGTGAAGGCAGGAAAGG 60.323 60.000 0.00 0.00 0.00 3.11
79 80 0.962855 GAGGTGAAGGCAGGAAAGGC 60.963 60.000 0.00 0.00 0.00 4.35
80 81 1.228552 GGTGAAGGCAGGAAAGGCA 60.229 57.895 0.00 0.00 36.37 4.75
81 82 1.527433 GGTGAAGGCAGGAAAGGCAC 61.527 60.000 0.00 0.00 36.37 5.01
82 83 1.600636 TGAAGGCAGGAAAGGCACG 60.601 57.895 0.00 0.00 36.37 5.34
83 84 1.302511 GAAGGCAGGAAAGGCACGA 60.303 57.895 0.00 0.00 36.37 4.35
84 85 1.578206 GAAGGCAGGAAAGGCACGAC 61.578 60.000 0.00 0.00 36.37 4.34
85 86 3.423154 GGCAGGAAAGGCACGACG 61.423 66.667 0.00 0.00 0.00 5.12
86 87 2.665185 GCAGGAAAGGCACGACGT 60.665 61.111 0.00 0.00 0.00 4.34
87 88 2.251642 GCAGGAAAGGCACGACGTT 61.252 57.895 0.00 0.00 0.00 3.99
88 89 1.569493 CAGGAAAGGCACGACGTTG 59.431 57.895 0.00 0.00 0.00 4.10
89 90 1.145377 AGGAAAGGCACGACGTTGT 59.855 52.632 1.48 1.48 0.00 3.32
90 91 1.157870 AGGAAAGGCACGACGTTGTG 61.158 55.000 28.26 28.26 42.81 3.33
96 97 3.930838 CACGACGTTGTGCTGCTA 58.069 55.556 22.45 0.00 32.31 3.49
97 98 2.445274 CACGACGTTGTGCTGCTAT 58.555 52.632 22.45 0.00 32.31 2.97
98 99 0.366871 CACGACGTTGTGCTGCTATC 59.633 55.000 22.45 0.00 32.31 2.08
99 100 0.038618 ACGACGTTGTGCTGCTATCA 60.039 50.000 7.89 0.00 0.00 2.15
100 101 1.280982 CGACGTTGTGCTGCTATCAT 58.719 50.000 0.00 0.00 0.00 2.45
101 102 1.660607 CGACGTTGTGCTGCTATCATT 59.339 47.619 0.00 0.00 0.00 2.57
102 103 2.857748 CGACGTTGTGCTGCTATCATTA 59.142 45.455 0.00 0.00 0.00 1.90
103 104 3.305897 CGACGTTGTGCTGCTATCATTAA 59.694 43.478 0.00 0.00 0.00 1.40
104 105 4.201676 CGACGTTGTGCTGCTATCATTAAA 60.202 41.667 0.00 0.00 0.00 1.52
105 106 5.221891 ACGTTGTGCTGCTATCATTAAAG 57.778 39.130 0.00 0.00 0.00 1.85
106 107 4.935205 ACGTTGTGCTGCTATCATTAAAGA 59.065 37.500 0.00 0.00 0.00 2.52
107 108 5.411361 ACGTTGTGCTGCTATCATTAAAGAA 59.589 36.000 0.00 0.00 0.00 2.52
108 109 6.072728 ACGTTGTGCTGCTATCATTAAAGAAA 60.073 34.615 0.00 0.00 0.00 2.52
109 110 6.968904 CGTTGTGCTGCTATCATTAAAGAAAT 59.031 34.615 0.00 0.00 0.00 2.17
110 111 7.164826 CGTTGTGCTGCTATCATTAAAGAAATC 59.835 37.037 0.00 0.00 0.00 2.17
111 112 7.628769 TGTGCTGCTATCATTAAAGAAATCA 57.371 32.000 0.00 0.00 0.00 2.57
112 113 8.054152 TGTGCTGCTATCATTAAAGAAATCAA 57.946 30.769 0.00 0.00 0.00 2.57
113 114 8.689061 TGTGCTGCTATCATTAAAGAAATCAAT 58.311 29.630 0.00 0.00 0.00 2.57
114 115 8.965172 GTGCTGCTATCATTAAAGAAATCAATG 58.035 33.333 0.00 0.00 0.00 2.82
115 116 8.905850 TGCTGCTATCATTAAAGAAATCAATGA 58.094 29.630 0.00 0.00 41.51 2.57
116 117 9.740239 GCTGCTATCATTAAAGAAATCAATGAA 57.260 29.630 0.00 0.00 40.86 2.57
128 129 9.924650 AAAGAAATCAATGAAAGATCAAAGGAG 57.075 29.630 0.00 0.00 39.49 3.69
129 130 8.647256 AGAAATCAATGAAAGATCAAAGGAGT 57.353 30.769 0.00 0.00 39.49 3.85
130 131 9.086758 AGAAATCAATGAAAGATCAAAGGAGTT 57.913 29.630 0.00 0.00 39.49 3.01
131 132 9.702494 GAAATCAATGAAAGATCAAAGGAGTTT 57.298 29.630 0.00 0.00 39.49 2.66
132 133 9.485206 AAATCAATGAAAGATCAAAGGAGTTTG 57.515 29.630 0.00 0.00 43.96 2.93
165 166 7.698506 ATTTTCATTCATGAGAGAAGAAGCA 57.301 32.000 10.55 0.00 38.19 3.91
166 167 6.738832 TTTCATTCATGAGAGAAGAAGCAG 57.261 37.500 10.55 0.00 38.19 4.24
167 168 5.672421 TCATTCATGAGAGAAGAAGCAGA 57.328 39.130 0.00 0.00 32.11 4.26
168 169 6.046290 TCATTCATGAGAGAAGAAGCAGAA 57.954 37.500 0.00 0.00 32.11 3.02
169 170 6.470278 TCATTCATGAGAGAAGAAGCAGAAA 58.530 36.000 0.00 0.00 32.11 2.52
170 171 6.370994 TCATTCATGAGAGAAGAAGCAGAAAC 59.629 38.462 0.00 0.00 32.11 2.78
171 172 4.573900 TCATGAGAGAAGAAGCAGAAACC 58.426 43.478 0.00 0.00 0.00 3.27
172 173 4.040829 TCATGAGAGAAGAAGCAGAAACCA 59.959 41.667 0.00 0.00 0.00 3.67
173 174 4.630644 TGAGAGAAGAAGCAGAAACCAT 57.369 40.909 0.00 0.00 0.00 3.55
174 175 4.321718 TGAGAGAAGAAGCAGAAACCATG 58.678 43.478 0.00 0.00 0.00 3.66
175 176 4.040829 TGAGAGAAGAAGCAGAAACCATGA 59.959 41.667 0.00 0.00 0.00 3.07
176 177 4.978099 AGAGAAGAAGCAGAAACCATGAA 58.022 39.130 0.00 0.00 0.00 2.57
177 178 5.002516 AGAGAAGAAGCAGAAACCATGAAG 58.997 41.667 0.00 0.00 0.00 3.02
178 179 4.723309 AGAAGAAGCAGAAACCATGAAGT 58.277 39.130 0.00 0.00 0.00 3.01
179 180 4.518211 AGAAGAAGCAGAAACCATGAAGTG 59.482 41.667 0.00 0.00 0.00 3.16
235 236 8.947115 GGATATAGGTAGATATGTTTGGTTTGC 58.053 37.037 0.00 0.00 0.00 3.68
236 237 9.726438 GATATAGGTAGATATGTTTGGTTTGCT 57.274 33.333 0.00 0.00 0.00 3.91
237 238 9.726438 ATATAGGTAGATATGTTTGGTTTGCTC 57.274 33.333 0.00 0.00 0.00 4.26
238 239 5.815581 AGGTAGATATGTTTGGTTTGCTCA 58.184 37.500 0.00 0.00 0.00 4.26
239 240 6.245408 AGGTAGATATGTTTGGTTTGCTCAA 58.755 36.000 0.00 0.00 0.00 3.02
240 241 6.151144 AGGTAGATATGTTTGGTTTGCTCAAC 59.849 38.462 0.00 0.00 34.18 3.18
251 252 4.419522 GTTTGCTCAACCACGTGATATT 57.580 40.909 19.30 5.44 0.00 1.28
252 253 4.158384 GTTTGCTCAACCACGTGATATTG 58.842 43.478 19.30 17.50 0.00 1.90
253 254 3.052455 TGCTCAACCACGTGATATTGT 57.948 42.857 19.30 2.31 0.00 2.71
254 255 4.195225 TGCTCAACCACGTGATATTGTA 57.805 40.909 19.30 7.81 0.00 2.41
255 256 4.570930 TGCTCAACCACGTGATATTGTAA 58.429 39.130 19.30 6.20 0.00 2.41
256 257 4.390603 TGCTCAACCACGTGATATTGTAAC 59.609 41.667 19.30 11.79 0.00 2.50
257 258 4.491924 GCTCAACCACGTGATATTGTAACG 60.492 45.833 19.30 9.59 42.82 3.18
258 259 4.807443 TCAACCACGTGATATTGTAACGA 58.193 39.130 19.30 1.25 39.64 3.85
259 260 5.412640 TCAACCACGTGATATTGTAACGAT 58.587 37.500 19.30 0.00 39.64 3.73
260 261 5.870433 TCAACCACGTGATATTGTAACGATT 59.130 36.000 19.30 0.00 39.64 3.34
261 262 5.961395 ACCACGTGATATTGTAACGATTC 57.039 39.130 19.30 0.00 39.64 2.52
262 263 4.807304 ACCACGTGATATTGTAACGATTCC 59.193 41.667 19.30 0.00 39.64 3.01
263 264 4.085261 CCACGTGATATTGTAACGATTCCG 60.085 45.833 19.30 0.00 39.64 4.30
264 265 4.046462 ACGTGATATTGTAACGATTCCGG 58.954 43.478 0.00 0.00 39.64 5.14
265 266 4.046462 CGTGATATTGTAACGATTCCGGT 58.954 43.478 0.00 0.00 39.64 5.28
266 267 4.085261 CGTGATATTGTAACGATTCCGGTG 60.085 45.833 0.00 0.00 39.64 4.94
267 268 5.045215 GTGATATTGTAACGATTCCGGTGA 58.955 41.667 0.00 0.00 40.78 4.02
268 269 5.521010 GTGATATTGTAACGATTCCGGTGAA 59.479 40.000 0.00 0.00 40.78 3.18
269 270 5.521010 TGATATTGTAACGATTCCGGTGAAC 59.479 40.000 0.00 0.00 40.78 3.18
270 271 3.389925 TTGTAACGATTCCGGTGAACT 57.610 42.857 0.00 0.00 40.78 3.01
271 272 3.389925 TGTAACGATTCCGGTGAACTT 57.610 42.857 0.00 0.00 40.78 2.66
272 273 4.517952 TGTAACGATTCCGGTGAACTTA 57.482 40.909 0.00 0.00 40.78 2.24
273 274 5.075858 TGTAACGATTCCGGTGAACTTAT 57.924 39.130 0.00 0.00 40.78 1.73
274 275 5.481105 TGTAACGATTCCGGTGAACTTATT 58.519 37.500 0.00 0.00 40.78 1.40
275 276 5.933463 TGTAACGATTCCGGTGAACTTATTT 59.067 36.000 0.00 0.00 40.78 1.40
276 277 4.939509 ACGATTCCGGTGAACTTATTTG 57.060 40.909 0.00 0.00 40.78 2.32
277 278 4.571919 ACGATTCCGGTGAACTTATTTGA 58.428 39.130 0.00 0.00 40.78 2.69
278 279 4.998672 ACGATTCCGGTGAACTTATTTGAA 59.001 37.500 0.00 0.00 40.78 2.69
279 280 5.646360 ACGATTCCGGTGAACTTATTTGAAT 59.354 36.000 0.00 0.00 40.78 2.57
280 281 5.965334 CGATTCCGGTGAACTTATTTGAATG 59.035 40.000 0.00 0.00 32.13 2.67
281 282 6.183360 CGATTCCGGTGAACTTATTTGAATGA 60.183 38.462 0.00 0.00 32.13 2.57
282 283 6.494893 TTCCGGTGAACTTATTTGAATGAG 57.505 37.500 0.00 0.00 0.00 2.90
283 284 5.800296 TCCGGTGAACTTATTTGAATGAGA 58.200 37.500 0.00 0.00 0.00 3.27
284 285 6.234920 TCCGGTGAACTTATTTGAATGAGAA 58.765 36.000 0.00 0.00 0.00 2.87
285 286 6.884295 TCCGGTGAACTTATTTGAATGAGAAT 59.116 34.615 0.00 0.00 0.00 2.40
286 287 7.065803 TCCGGTGAACTTATTTGAATGAGAATC 59.934 37.037 0.00 2.34 0.00 2.52
287 288 6.901887 CGGTGAACTTATTTGAATGAGAATCG 59.098 38.462 2.92 0.00 38.61 3.34
288 289 7.413000 CGGTGAACTTATTTGAATGAGAATCGT 60.413 37.037 2.92 0.00 38.61 3.73
290 291 9.612620 GTGAACTTATTTGAATGAGAATCGTTT 57.387 29.630 2.92 0.00 46.05 3.60
296 297 9.849166 TTATTTGAATGAGAATCGTTTTTACCC 57.151 29.630 0.00 0.00 46.05 3.69
297 298 5.890424 TGAATGAGAATCGTTTTTACCCC 57.110 39.130 0.00 0.00 46.05 4.95
298 299 4.703093 TGAATGAGAATCGTTTTTACCCCC 59.297 41.667 0.00 0.00 46.05 5.40
323 324 5.950544 AAAAACTAAGGCCTTCTTTGGTT 57.049 34.783 24.49 16.35 39.22 3.67
324 325 5.531122 AAAACTAAGGCCTTCTTTGGTTC 57.469 39.130 24.49 0.00 37.19 3.62
325 326 3.876309 ACTAAGGCCTTCTTTGGTTCA 57.124 42.857 24.49 0.00 36.93 3.18
326 327 4.388577 ACTAAGGCCTTCTTTGGTTCAT 57.611 40.909 24.49 0.00 36.93 2.57
327 328 5.514500 ACTAAGGCCTTCTTTGGTTCATA 57.486 39.130 24.49 0.00 36.93 2.15
328 329 5.501156 ACTAAGGCCTTCTTTGGTTCATAG 58.499 41.667 24.49 11.63 36.93 2.23
329 330 3.372440 AGGCCTTCTTTGGTTCATAGG 57.628 47.619 0.00 0.00 0.00 2.57
330 331 2.919602 AGGCCTTCTTTGGTTCATAGGA 59.080 45.455 0.00 0.00 0.00 2.94
331 332 3.529319 AGGCCTTCTTTGGTTCATAGGAT 59.471 43.478 0.00 0.00 0.00 3.24
332 333 4.017130 AGGCCTTCTTTGGTTCATAGGATT 60.017 41.667 0.00 0.00 0.00 3.01
333 334 4.098501 GGCCTTCTTTGGTTCATAGGATTG 59.901 45.833 0.00 0.00 0.00 2.67
334 335 4.098501 GCCTTCTTTGGTTCATAGGATTGG 59.901 45.833 0.00 0.00 0.00 3.16
335 336 5.509498 CCTTCTTTGGTTCATAGGATTGGA 58.491 41.667 0.00 0.00 0.00 3.53
336 337 5.951747 CCTTCTTTGGTTCATAGGATTGGAA 59.048 40.000 0.00 0.00 0.00 3.53
337 338 6.437162 CCTTCTTTGGTTCATAGGATTGGAAA 59.563 38.462 0.00 0.00 0.00 3.13
338 339 7.039082 CCTTCTTTGGTTCATAGGATTGGAAAA 60.039 37.037 0.00 0.00 0.00 2.29
339 340 8.434589 TTCTTTGGTTCATAGGATTGGAAAAT 57.565 30.769 0.00 0.00 0.00 1.82
340 341 8.066612 TCTTTGGTTCATAGGATTGGAAAATC 57.933 34.615 0.00 0.00 0.00 2.17
341 342 7.673504 TCTTTGGTTCATAGGATTGGAAAATCA 59.326 33.333 1.28 0.00 0.00 2.57
342 343 7.976414 TTGGTTCATAGGATTGGAAAATCAT 57.024 32.000 1.28 0.00 0.00 2.45
343 344 9.486123 TTTGGTTCATAGGATTGGAAAATCATA 57.514 29.630 1.28 0.00 31.19 2.15
344 345 8.696043 TGGTTCATAGGATTGGAAAATCATAG 57.304 34.615 1.28 0.00 30.31 2.23
345 346 7.725397 TGGTTCATAGGATTGGAAAATCATAGG 59.275 37.037 1.28 0.58 30.31 2.57
346 347 7.944554 GGTTCATAGGATTGGAAAATCATAGGA 59.055 37.037 4.08 4.08 35.40 2.94
347 348 9.354673 GTTCATAGGATTGGAAAATCATAGGAA 57.645 33.333 13.10 13.10 41.07 3.36
352 353 8.293027 AGGATTGGAAAATCATAGGAATAGGA 57.707 34.615 1.28 0.00 0.00 2.94
353 354 8.736675 AGGATTGGAAAATCATAGGAATAGGAA 58.263 33.333 1.28 0.00 0.00 3.36
354 355 9.367160 GGATTGGAAAATCATAGGAATAGGAAA 57.633 33.333 1.28 0.00 0.00 3.13
356 357 9.942526 ATTGGAAAATCATAGGAATAGGAAAGT 57.057 29.630 0.00 0.00 0.00 2.66
357 358 8.980481 TGGAAAATCATAGGAATAGGAAAGTC 57.020 34.615 0.00 0.00 0.00 3.01
358 359 8.556589 TGGAAAATCATAGGAATAGGAAAGTCA 58.443 33.333 0.00 0.00 0.00 3.41
359 360 9.579932 GGAAAATCATAGGAATAGGAAAGTCAT 57.420 33.333 0.00 0.00 0.00 3.06
393 394 6.819397 ATGACATGCATCTCAAATCCTATG 57.181 37.500 8.81 0.00 28.85 2.23
394 395 4.517832 TGACATGCATCTCAAATCCTATGC 59.482 41.667 1.73 0.00 43.92 3.14
416 417 7.502120 TGCATAGGAATAGAAAAAGAGATGC 57.498 36.000 0.00 0.00 37.16 3.91
417 418 6.488006 TGCATAGGAATAGAAAAAGAGATGCC 59.512 38.462 0.00 0.00 36.09 4.40
418 419 6.072230 GCATAGGAATAGAAAAAGAGATGCCC 60.072 42.308 0.00 0.00 31.89 5.36
419 420 5.723860 AGGAATAGAAAAAGAGATGCCCT 57.276 39.130 0.00 0.00 0.00 5.19
420 421 6.084749 AGGAATAGAAAAAGAGATGCCCTT 57.915 37.500 0.00 0.00 0.00 3.95
421 422 6.497640 AGGAATAGAAAAAGAGATGCCCTTT 58.502 36.000 0.00 0.00 35.55 3.11
422 423 6.379417 AGGAATAGAAAAAGAGATGCCCTTTG 59.621 38.462 0.00 0.00 34.42 2.77
423 424 6.378280 GGAATAGAAAAAGAGATGCCCTTTGA 59.622 38.462 0.00 0.00 34.42 2.69
424 425 7.069208 GGAATAGAAAAAGAGATGCCCTTTGAT 59.931 37.037 0.00 0.00 34.42 2.57
425 426 7.968014 ATAGAAAAAGAGATGCCCTTTGATT 57.032 32.000 0.00 0.00 34.42 2.57
426 427 6.278172 AGAAAAAGAGATGCCCTTTGATTC 57.722 37.500 0.00 0.00 34.42 2.52
427 428 5.776716 AGAAAAAGAGATGCCCTTTGATTCA 59.223 36.000 0.00 0.00 34.42 2.57
428 429 5.397142 AAAAGAGATGCCCTTTGATTCAC 57.603 39.130 0.00 0.00 34.42 3.18
429 430 3.726557 AGAGATGCCCTTTGATTCACA 57.273 42.857 0.00 0.00 0.00 3.58
430 431 4.246712 AGAGATGCCCTTTGATTCACAT 57.753 40.909 0.00 0.00 0.00 3.21
431 432 4.607239 AGAGATGCCCTTTGATTCACATT 58.393 39.130 0.00 0.00 0.00 2.71
432 433 5.759059 AGAGATGCCCTTTGATTCACATTA 58.241 37.500 0.00 0.00 0.00 1.90
433 434 6.371278 AGAGATGCCCTTTGATTCACATTAT 58.629 36.000 0.00 0.00 0.00 1.28
434 435 7.520798 AGAGATGCCCTTTGATTCACATTATA 58.479 34.615 0.00 0.00 0.00 0.98
435 436 8.168725 AGAGATGCCCTTTGATTCACATTATAT 58.831 33.333 0.00 0.00 0.00 0.86
436 437 9.453572 GAGATGCCCTTTGATTCACATTATATA 57.546 33.333 0.00 0.00 0.00 0.86
437 438 9.812347 AGATGCCCTTTGATTCACATTATATAA 57.188 29.630 0.00 0.00 0.00 0.98
493 494 8.752005 TTTTCCTATGAAATGTGAAGGATAGG 57.248 34.615 0.00 0.00 40.08 2.57
494 495 7.690454 TTCCTATGAAATGTGAAGGATAGGA 57.310 36.000 0.00 0.00 39.66 2.94
495 496 7.690454 TCCTATGAAATGTGAAGGATAGGAA 57.310 36.000 0.00 0.00 38.86 3.36
496 497 7.739825 TCCTATGAAATGTGAAGGATAGGAAG 58.260 38.462 0.00 0.00 38.86 3.46
497 498 7.568738 TCCTATGAAATGTGAAGGATAGGAAGA 59.431 37.037 0.00 0.00 38.86 2.87
498 499 8.213679 CCTATGAAATGTGAAGGATAGGAAGAA 58.786 37.037 0.00 0.00 36.16 2.52
499 500 9.790344 CTATGAAATGTGAAGGATAGGAAGAAT 57.210 33.333 0.00 0.00 0.00 2.40
501 502 8.511604 TGAAATGTGAAGGATAGGAAGAATTC 57.488 34.615 0.00 0.00 46.67 2.17
526 527 9.799106 TCCTTCATAGAAATAGGATTTCATTCC 57.201 33.333 13.01 0.00 32.00 3.01
538 539 7.610580 AGGATTTCATTCCTACAAACCAAAA 57.389 32.000 0.00 0.00 44.50 2.44
539 540 8.028652 AGGATTTCATTCCTACAAACCAAAAA 57.971 30.769 0.00 0.00 44.50 1.94
540 541 8.150296 AGGATTTCATTCCTACAAACCAAAAAG 58.850 33.333 0.00 0.00 44.50 2.27
541 542 7.095229 GGATTTCATTCCTACAAACCAAAAAGC 60.095 37.037 0.00 0.00 32.68 3.51
542 543 6.478512 TTCATTCCTACAAACCAAAAAGCT 57.521 33.333 0.00 0.00 0.00 3.74
543 544 6.084326 TCATTCCTACAAACCAAAAAGCTC 57.916 37.500 0.00 0.00 0.00 4.09
544 545 5.833131 TCATTCCTACAAACCAAAAAGCTCT 59.167 36.000 0.00 0.00 0.00 4.09
545 546 5.514274 TTCCTACAAACCAAAAAGCTCTG 57.486 39.130 0.00 0.00 0.00 3.35
546 547 4.787551 TCCTACAAACCAAAAAGCTCTGA 58.212 39.130 0.00 0.00 0.00 3.27
547 548 5.197451 TCCTACAAACCAAAAAGCTCTGAA 58.803 37.500 0.00 0.00 0.00 3.02
548 549 5.299279 TCCTACAAACCAAAAAGCTCTGAAG 59.701 40.000 0.00 0.00 0.00 3.02
549 550 4.391405 ACAAACCAAAAAGCTCTGAAGG 57.609 40.909 0.00 0.00 0.00 3.46
550 551 4.023291 ACAAACCAAAAAGCTCTGAAGGA 58.977 39.130 0.00 0.00 0.00 3.36
551 552 4.466015 ACAAACCAAAAAGCTCTGAAGGAA 59.534 37.500 0.00 0.00 0.00 3.36
552 553 5.129320 ACAAACCAAAAAGCTCTGAAGGAAT 59.871 36.000 0.00 0.00 0.00 3.01
553 554 5.876651 AACCAAAAAGCTCTGAAGGAATT 57.123 34.783 0.00 0.00 0.00 2.17
554 555 5.876651 ACCAAAAAGCTCTGAAGGAATTT 57.123 34.783 0.00 0.00 0.00 1.82
555 556 6.239217 ACCAAAAAGCTCTGAAGGAATTTT 57.761 33.333 0.00 0.00 0.00 1.82
556 557 6.653020 ACCAAAAAGCTCTGAAGGAATTTTT 58.347 32.000 0.00 0.00 35.30 1.94
608 609 9.933723 ATCCTACAAAATTTCTCCAAATCAAAG 57.066 29.630 0.00 0.00 30.37 2.77
609 610 8.367156 TCCTACAAAATTTCTCCAAATCAAAGG 58.633 33.333 0.00 0.00 30.37 3.11
610 611 8.367156 CCTACAAAATTTCTCCAAATCAAAGGA 58.633 33.333 0.00 0.00 30.37 3.36
615 616 2.521547 CTCCAAATCAAAGGAGGCCT 57.478 50.000 3.86 3.86 46.11 5.19
616 617 3.652057 CTCCAAATCAAAGGAGGCCTA 57.348 47.619 4.42 0.00 46.11 3.93
617 618 3.968265 CTCCAAATCAAAGGAGGCCTAA 58.032 45.455 4.42 0.00 46.11 2.69
618 619 4.344104 CTCCAAATCAAAGGAGGCCTAAA 58.656 43.478 4.42 0.00 46.11 1.85
619 620 4.946646 TCCAAATCAAAGGAGGCCTAAAT 58.053 39.130 4.42 0.00 31.13 1.40
620 621 4.956075 TCCAAATCAAAGGAGGCCTAAATC 59.044 41.667 4.42 0.00 31.13 2.17
621 622 4.711355 CCAAATCAAAGGAGGCCTAAATCA 59.289 41.667 4.42 0.00 31.13 2.57
622 623 5.163478 CCAAATCAAAGGAGGCCTAAATCAG 60.163 44.000 4.42 0.00 31.13 2.90
633 634 1.604278 CCTAAATCAGGCGCTAAAGGC 59.396 52.381 7.64 0.00 37.70 4.35
644 645 1.675552 GCTAAAGGCGGCAAATAGGA 58.324 50.000 13.08 0.00 0.00 2.94
645 646 2.021457 GCTAAAGGCGGCAAATAGGAA 58.979 47.619 13.08 0.00 0.00 3.36
646 647 2.623416 GCTAAAGGCGGCAAATAGGAAT 59.377 45.455 13.08 0.00 0.00 3.01
647 648 3.068165 GCTAAAGGCGGCAAATAGGAATT 59.932 43.478 13.08 0.00 0.00 2.17
648 649 3.525268 AAAGGCGGCAAATAGGAATTG 57.475 42.857 13.08 0.00 0.00 2.32
649 650 1.402787 AGGCGGCAAATAGGAATTGG 58.597 50.000 13.08 0.00 0.00 3.16
650 651 0.249447 GGCGGCAAATAGGAATTGGC 60.249 55.000 3.07 3.05 46.46 4.52
654 655 1.559831 GCAAATAGGAATTGGCACGC 58.440 50.000 0.00 0.00 41.12 5.34
655 656 1.135141 GCAAATAGGAATTGGCACGCA 60.135 47.619 0.00 0.00 41.12 5.24
656 657 2.673610 GCAAATAGGAATTGGCACGCAA 60.674 45.455 0.00 0.00 41.12 4.85
657 658 3.583806 CAAATAGGAATTGGCACGCAAA 58.416 40.909 0.00 0.00 0.00 3.68
658 659 3.508744 AATAGGAATTGGCACGCAAAG 57.491 42.857 0.00 0.00 0.00 2.77
659 660 2.192664 TAGGAATTGGCACGCAAAGA 57.807 45.000 0.00 0.00 0.00 2.52
660 661 1.549203 AGGAATTGGCACGCAAAGAT 58.451 45.000 0.00 0.00 0.00 2.40
661 662 1.474077 AGGAATTGGCACGCAAAGATC 59.526 47.619 0.00 0.00 0.00 2.75
662 663 1.202114 GGAATTGGCACGCAAAGATCA 59.798 47.619 0.00 0.00 0.00 2.92
663 664 2.253603 GAATTGGCACGCAAAGATCAC 58.746 47.619 0.00 0.00 0.00 3.06
664 665 0.168788 ATTGGCACGCAAAGATCACG 59.831 50.000 0.00 0.00 0.00 4.35
665 666 2.202349 GGCACGCAAAGATCACGC 60.202 61.111 0.00 0.00 0.00 5.34
666 667 2.555782 GCACGCAAAGATCACGCA 59.444 55.556 0.00 0.00 0.00 5.24
667 668 1.793613 GCACGCAAAGATCACGCAC 60.794 57.895 0.00 0.00 0.00 5.34
668 669 1.862123 CACGCAAAGATCACGCACT 59.138 52.632 0.00 0.00 0.00 4.40
669 670 1.067693 CACGCAAAGATCACGCACTA 58.932 50.000 0.00 0.00 0.00 2.74
670 671 1.068474 ACGCAAAGATCACGCACTAC 58.932 50.000 0.00 0.00 0.00 2.73
671 672 1.336887 ACGCAAAGATCACGCACTACT 60.337 47.619 0.00 0.00 0.00 2.57
672 673 2.094906 ACGCAAAGATCACGCACTACTA 60.095 45.455 0.00 0.00 0.00 1.82
673 674 2.279136 CGCAAAGATCACGCACTACTAC 59.721 50.000 0.00 0.00 0.00 2.73
674 675 2.279136 GCAAAGATCACGCACTACTACG 59.721 50.000 0.00 0.00 0.00 3.51
675 676 2.190325 AAGATCACGCACTACTACGC 57.810 50.000 0.00 0.00 0.00 4.42
676 677 0.381089 AGATCACGCACTACTACGCC 59.619 55.000 0.00 0.00 0.00 5.68
677 678 0.381089 GATCACGCACTACTACGCCT 59.619 55.000 0.00 0.00 0.00 5.52
678 679 1.600957 GATCACGCACTACTACGCCTA 59.399 52.381 0.00 0.00 0.00 3.93
679 680 0.729116 TCACGCACTACTACGCCTAC 59.271 55.000 0.00 0.00 0.00 3.18
681 682 1.010350 CGCACTACTACGCCTACGG 60.010 63.158 0.00 0.00 46.04 4.02
682 683 1.358046 GCACTACTACGCCTACGGG 59.642 63.158 0.00 0.00 46.04 5.28
720 721 2.091588 CGTCGAAATCGTAACCACCAAG 59.908 50.000 2.41 0.00 40.80 3.61
853 854 1.203928 CGCCTCTTAACTCTGCATCG 58.796 55.000 0.00 0.00 0.00 3.84
913 914 2.360638 CCCATCCAAATTCCATTCCCCT 60.361 50.000 0.00 0.00 0.00 4.79
915 916 2.846665 TCCAAATTCCATTCCCCTCC 57.153 50.000 0.00 0.00 0.00 4.30
989 990 2.509336 GCACACTCCCATCCGTCG 60.509 66.667 0.00 0.00 0.00 5.12
1075 1091 4.821589 CCGAGCTGCCCGAGTTCC 62.822 72.222 4.74 0.00 0.00 3.62
1413 1429 0.179009 ACTACGCCCGCATCTACCTA 60.179 55.000 0.00 0.00 0.00 3.08
1434 1450 2.764128 GACATCCTCCCCCGCTCA 60.764 66.667 0.00 0.00 0.00 4.26
2061 2086 0.315251 TCGCTGGAGTGACAAGTCAG 59.685 55.000 2.62 0.00 40.75 3.51
2062 2087 0.032678 CGCTGGAGTGACAAGTCAGT 59.967 55.000 10.15 10.15 45.25 3.41
2145 2184 4.446413 GGTGTCGGTGTAGGGGCG 62.446 72.222 0.00 0.00 0.00 6.13
2150 2189 4.143333 CGGTGTAGGGGCGGTGAG 62.143 72.222 0.00 0.00 0.00 3.51
2277 2324 2.114670 GCATGGTGGTGACGGATGG 61.115 63.158 0.00 0.00 0.00 3.51
2398 2457 5.414454 TGATTCCATTCGTTTTCTGTTAGGG 59.586 40.000 0.00 0.00 0.00 3.53
2485 2545 6.954487 ATAATCGAGGGGGTATTTTTGTTC 57.046 37.500 0.00 0.00 0.00 3.18
2486 2546 3.791953 TCGAGGGGGTATTTTTGTTCA 57.208 42.857 0.00 0.00 0.00 3.18
2487 2547 4.310022 TCGAGGGGGTATTTTTGTTCAT 57.690 40.909 0.00 0.00 0.00 2.57
2488 2548 4.668636 TCGAGGGGGTATTTTTGTTCATT 58.331 39.130 0.00 0.00 0.00 2.57
2496 2556 7.283354 GGGGGTATTTTTGTTCATTTGTTTTCA 59.717 33.333 0.00 0.00 0.00 2.69
2503 2563 7.518731 TTTGTTCATTTGTTTTCAGTAGTGC 57.481 32.000 0.00 0.00 0.00 4.40
2505 2565 6.033341 TGTTCATTTGTTTTCAGTAGTGCAC 58.967 36.000 9.40 9.40 0.00 4.57
2514 2574 6.654582 TGTTTTCAGTAGTGCACATCATATGT 59.345 34.615 21.04 0.00 46.22 2.29
2526 2586 3.140144 ACATCATATGTTAAGGGGTGGGG 59.860 47.826 1.90 0.00 41.63 4.96
2527 2587 2.140224 TCATATGTTAAGGGGTGGGGG 58.860 52.381 1.90 0.00 0.00 5.40
2609 2673 2.100991 CGCAAATCTCAAGCCCGC 59.899 61.111 0.00 0.00 0.00 6.13
2651 2721 0.250553 ATCCGGCGTTTCCACTTTGA 60.251 50.000 6.01 0.00 34.01 2.69
2765 2995 2.610873 TGGTAAAGGCGGGGAAAAATT 58.389 42.857 0.00 0.00 0.00 1.82
2779 3009 4.188462 GGAAAAATTATTTGGCCCCTTCG 58.812 43.478 0.00 0.00 0.00 3.79
2792 3022 4.052229 CTTCGTCTCGTGCCCGGT 62.052 66.667 0.00 0.00 33.95 5.28
2863 3104 1.804748 CGGTTTCTTCCTTTTCTCCCG 59.195 52.381 0.00 0.00 0.00 5.14
2864 3105 2.809299 CGGTTTCTTCCTTTTCTCCCGT 60.809 50.000 0.00 0.00 0.00 5.28
2892 3133 0.605589 GTCTCCGGTTGGTGAAAGGG 60.606 60.000 0.00 0.00 39.36 3.95
2902 3144 1.351017 TGGTGAAAGGGTGATCACTCC 59.649 52.381 22.32 20.94 44.20 3.85
2903 3145 1.351017 GGTGAAAGGGTGATCACTCCA 59.649 52.381 22.32 10.47 44.20 3.86
2908 3150 0.994247 AGGGTGATCACTCCATTGCA 59.006 50.000 22.32 0.00 30.26 4.08
2937 3179 6.293626 GCTAGAGTGTTGTGAATGATGTTGTT 60.294 38.462 0.00 0.00 0.00 2.83
2947 3189 4.024977 TGAATGATGTTGTTGTCAGACGTG 60.025 41.667 0.00 0.00 0.00 4.49
2956 3198 0.107410 TGTCAGACGTGGGCTTTGTT 60.107 50.000 0.00 0.00 0.00 2.83
2966 3212 0.888619 GGGCTTTGTTCAGGCTTACC 59.111 55.000 0.00 0.00 39.35 2.85
2980 3226 0.962489 CTTACCGCAGATCCGAGGAT 59.038 55.000 5.64 3.97 37.59 3.24
2984 3230 0.387367 CCGCAGATCCGAGGATTACG 60.387 60.000 6.04 9.98 34.60 3.18
2992 3238 1.216977 CGAGGATTACGGCCACACA 59.783 57.895 2.24 0.00 0.00 3.72
3005 3251 0.235665 CCACACAACTTGCAGCGTAG 59.764 55.000 0.00 0.00 0.00 3.51
3006 3252 0.937304 CACACAACTTGCAGCGTAGT 59.063 50.000 0.00 0.00 0.00 2.73
3007 3253 2.131972 CACACAACTTGCAGCGTAGTA 58.868 47.619 0.74 0.00 0.00 1.82
3008 3254 2.096909 CACACAACTTGCAGCGTAGTAC 60.097 50.000 0.74 0.00 0.00 2.73
3009 3255 2.223971 ACACAACTTGCAGCGTAGTACT 60.224 45.455 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.355169 CAAGACTTTCCAGATTTGAAGATTCAA 58.645 33.333 3.91 3.91 44.78 2.69
4 5 7.040201 CCAAGACTTTCCAGATTTGAAGATTCA 60.040 37.037 0.00 0.00 34.92 2.57
5 6 7.040132 ACCAAGACTTTCCAGATTTGAAGATTC 60.040 37.037 0.00 0.00 0.00 2.52
6 7 6.779539 ACCAAGACTTTCCAGATTTGAAGATT 59.220 34.615 0.00 0.00 0.00 2.40
7 8 6.208204 CACCAAGACTTTCCAGATTTGAAGAT 59.792 38.462 0.00 0.00 0.00 2.40
8 9 5.532406 CACCAAGACTTTCCAGATTTGAAGA 59.468 40.000 0.00 0.00 0.00 2.87
9 10 5.300286 ACACCAAGACTTTCCAGATTTGAAG 59.700 40.000 0.00 0.00 0.00 3.02
10 11 5.200483 ACACCAAGACTTTCCAGATTTGAA 58.800 37.500 0.00 0.00 0.00 2.69
11 12 4.792068 ACACCAAGACTTTCCAGATTTGA 58.208 39.130 0.00 0.00 0.00 2.69
12 13 4.022849 GGACACCAAGACTTTCCAGATTTG 60.023 45.833 0.00 0.00 0.00 2.32
13 14 4.141158 AGGACACCAAGACTTTCCAGATTT 60.141 41.667 6.45 0.00 0.00 2.17
14 15 3.395941 AGGACACCAAGACTTTCCAGATT 59.604 43.478 6.45 0.00 0.00 2.40
15 16 2.982488 AGGACACCAAGACTTTCCAGAT 59.018 45.455 6.45 0.00 0.00 2.90
16 17 2.368875 GAGGACACCAAGACTTTCCAGA 59.631 50.000 6.45 0.00 0.00 3.86
17 18 2.104792 TGAGGACACCAAGACTTTCCAG 59.895 50.000 6.45 0.00 0.00 3.86
18 19 2.104792 CTGAGGACACCAAGACTTTCCA 59.895 50.000 6.45 0.00 0.00 3.53
19 20 2.368875 TCTGAGGACACCAAGACTTTCC 59.631 50.000 0.00 0.00 0.00 3.13
20 21 3.070302 AGTCTGAGGACACCAAGACTTTC 59.930 47.826 15.50 0.00 42.92 2.62
21 22 3.041946 AGTCTGAGGACACCAAGACTTT 58.958 45.455 15.50 2.07 42.92 2.66
22 23 2.366916 CAGTCTGAGGACACCAAGACTT 59.633 50.000 17.43 6.61 42.92 3.01
23 24 1.967066 CAGTCTGAGGACACCAAGACT 59.033 52.381 15.50 15.50 44.84 3.24
24 25 1.689273 ACAGTCTGAGGACACCAAGAC 59.311 52.381 6.91 12.55 44.36 3.01
25 26 2.088104 ACAGTCTGAGGACACCAAGA 57.912 50.000 6.91 0.00 44.36 3.02
26 27 2.366916 AGAACAGTCTGAGGACACCAAG 59.633 50.000 6.91 0.00 44.36 3.61
27 28 2.398588 AGAACAGTCTGAGGACACCAA 58.601 47.619 6.91 0.00 44.36 3.67
28 29 2.088104 AGAACAGTCTGAGGACACCA 57.912 50.000 6.91 0.00 44.36 4.17
29 30 2.891580 TGTAGAACAGTCTGAGGACACC 59.108 50.000 6.91 0.00 44.36 4.16
30 31 4.167554 CTGTAGAACAGTCTGAGGACAC 57.832 50.000 6.91 0.00 44.36 3.67
31 32 4.624187 GGCTGTAGAACAGTCTGAGGACA 61.624 52.174 6.91 4.44 46.70 4.02
32 33 2.094442 GGCTGTAGAACAGTCTGAGGAC 60.094 54.545 6.91 0.00 46.70 3.85
33 34 2.171840 GGCTGTAGAACAGTCTGAGGA 58.828 52.381 6.91 0.00 46.70 3.71
34 35 2.663826 GGCTGTAGAACAGTCTGAGG 57.336 55.000 6.91 0.00 46.70 3.86
42 43 1.272490 CTCCTTGACGGCTGTAGAACA 59.728 52.381 0.00 0.00 0.00 3.18
43 44 1.404315 CCTCCTTGACGGCTGTAGAAC 60.404 57.143 0.00 0.00 0.00 3.01
44 45 0.895530 CCTCCTTGACGGCTGTAGAA 59.104 55.000 0.00 0.00 0.00 2.10
45 46 0.251653 ACCTCCTTGACGGCTGTAGA 60.252 55.000 0.00 0.00 0.00 2.59
46 47 0.108615 CACCTCCTTGACGGCTGTAG 60.109 60.000 0.00 0.00 0.00 2.74
47 48 0.541063 TCACCTCCTTGACGGCTGTA 60.541 55.000 0.00 0.00 0.00 2.74
48 49 1.407656 TTCACCTCCTTGACGGCTGT 61.408 55.000 0.00 0.00 0.00 4.40
49 50 0.671781 CTTCACCTCCTTGACGGCTG 60.672 60.000 0.00 0.00 0.00 4.85
50 51 1.674057 CTTCACCTCCTTGACGGCT 59.326 57.895 0.00 0.00 0.00 5.52
51 52 1.376037 CCTTCACCTCCTTGACGGC 60.376 63.158 0.00 0.00 28.94 5.68
52 53 1.376037 GCCTTCACCTCCTTGACGG 60.376 63.158 0.00 0.00 37.85 4.79
53 54 0.671781 CTGCCTTCACCTCCTTGACG 60.672 60.000 0.00 0.00 0.00 4.35
54 55 0.322008 CCTGCCTTCACCTCCTTGAC 60.322 60.000 0.00 0.00 0.00 3.18
55 56 0.473694 TCCTGCCTTCACCTCCTTGA 60.474 55.000 0.00 0.00 0.00 3.02
56 57 0.401738 TTCCTGCCTTCACCTCCTTG 59.598 55.000 0.00 0.00 0.00 3.61
57 58 1.074566 CTTTCCTGCCTTCACCTCCTT 59.925 52.381 0.00 0.00 0.00 3.36
58 59 0.695347 CTTTCCTGCCTTCACCTCCT 59.305 55.000 0.00 0.00 0.00 3.69
59 60 0.322906 CCTTTCCTGCCTTCACCTCC 60.323 60.000 0.00 0.00 0.00 4.30
60 61 0.962855 GCCTTTCCTGCCTTCACCTC 60.963 60.000 0.00 0.00 0.00 3.85
61 62 1.075659 GCCTTTCCTGCCTTCACCT 59.924 57.895 0.00 0.00 0.00 4.00
62 63 1.228552 TGCCTTTCCTGCCTTCACC 60.229 57.895 0.00 0.00 0.00 4.02
63 64 1.856265 CGTGCCTTTCCTGCCTTCAC 61.856 60.000 0.00 0.00 0.00 3.18
64 65 1.600636 CGTGCCTTTCCTGCCTTCA 60.601 57.895 0.00 0.00 0.00 3.02
65 66 1.302511 TCGTGCCTTTCCTGCCTTC 60.303 57.895 0.00 0.00 0.00 3.46
66 67 1.600916 GTCGTGCCTTTCCTGCCTT 60.601 57.895 0.00 0.00 0.00 4.35
67 68 2.032681 GTCGTGCCTTTCCTGCCT 59.967 61.111 0.00 0.00 0.00 4.75
68 69 3.423154 CGTCGTGCCTTTCCTGCC 61.423 66.667 0.00 0.00 0.00 4.85
69 70 2.251642 AACGTCGTGCCTTTCCTGC 61.252 57.895 0.00 0.00 0.00 4.85
70 71 1.157870 ACAACGTCGTGCCTTTCCTG 61.158 55.000 0.00 0.00 0.00 3.86
71 72 1.145377 ACAACGTCGTGCCTTTCCT 59.855 52.632 0.00 0.00 0.00 3.36
72 73 1.278637 CACAACGTCGTGCCTTTCC 59.721 57.895 0.00 0.00 0.00 3.13
73 74 4.893241 CACAACGTCGTGCCTTTC 57.107 55.556 0.00 0.00 0.00 2.62
79 80 0.366871 GATAGCAGCACAACGTCGTG 59.633 55.000 1.22 1.22 40.00 4.35
80 81 0.038618 TGATAGCAGCACAACGTCGT 60.039 50.000 0.00 0.00 0.00 4.34
81 82 1.280982 ATGATAGCAGCACAACGTCG 58.719 50.000 0.00 0.00 0.00 5.12
82 83 4.857871 TTAATGATAGCAGCACAACGTC 57.142 40.909 0.00 0.00 0.00 4.34
83 84 4.935205 TCTTTAATGATAGCAGCACAACGT 59.065 37.500 0.00 0.00 0.00 3.99
84 85 5.469373 TCTTTAATGATAGCAGCACAACG 57.531 39.130 0.00 0.00 0.00 4.10
85 86 7.970061 TGATTTCTTTAATGATAGCAGCACAAC 59.030 33.333 0.00 0.00 0.00 3.32
86 87 8.054152 TGATTTCTTTAATGATAGCAGCACAA 57.946 30.769 0.00 0.00 0.00 3.33
87 88 7.628769 TGATTTCTTTAATGATAGCAGCACA 57.371 32.000 0.00 0.00 0.00 4.57
88 89 8.965172 CATTGATTTCTTTAATGATAGCAGCAC 58.035 33.333 0.00 0.00 34.55 4.40
89 90 8.905850 TCATTGATTTCTTTAATGATAGCAGCA 58.094 29.630 0.00 0.00 36.28 4.41
90 91 9.740239 TTCATTGATTTCTTTAATGATAGCAGC 57.260 29.630 0.00 0.00 39.67 5.25
102 103 9.924650 CTCCTTTGATCTTTCATTGATTTCTTT 57.075 29.630 0.00 0.00 0.00 2.52
103 104 9.086758 ACTCCTTTGATCTTTCATTGATTTCTT 57.913 29.630 0.00 0.00 0.00 2.52
104 105 8.647256 ACTCCTTTGATCTTTCATTGATTTCT 57.353 30.769 0.00 0.00 0.00 2.52
105 106 9.702494 AAACTCCTTTGATCTTTCATTGATTTC 57.298 29.630 0.00 0.00 0.00 2.17
106 107 9.485206 CAAACTCCTTTGATCTTTCATTGATTT 57.515 29.630 0.00 0.00 39.43 2.17
107 108 8.863086 TCAAACTCCTTTGATCTTTCATTGATT 58.137 29.630 0.00 0.00 40.76 2.57
108 109 8.413309 TCAAACTCCTTTGATCTTTCATTGAT 57.587 30.769 0.00 0.00 40.76 2.57
109 110 7.720957 TCTCAAACTCCTTTGATCTTTCATTGA 59.279 33.333 0.00 0.00 43.89 2.57
110 111 7.879070 TCTCAAACTCCTTTGATCTTTCATTG 58.121 34.615 0.00 0.00 43.89 2.82
111 112 7.723172 ACTCTCAAACTCCTTTGATCTTTCATT 59.277 33.333 0.00 0.00 43.89 2.57
112 113 7.230027 ACTCTCAAACTCCTTTGATCTTTCAT 58.770 34.615 0.00 0.00 43.89 2.57
113 114 6.595682 ACTCTCAAACTCCTTTGATCTTTCA 58.404 36.000 0.00 0.00 43.89 2.69
114 115 7.503521 AACTCTCAAACTCCTTTGATCTTTC 57.496 36.000 0.00 0.00 43.89 2.62
139 140 9.404848 TGCTTCTTCTCTCATGAATGAAAATAT 57.595 29.630 0.00 0.00 36.18 1.28
140 141 8.797350 TGCTTCTTCTCTCATGAATGAAAATA 57.203 30.769 0.00 0.00 36.18 1.40
141 142 7.610692 TCTGCTTCTTCTCTCATGAATGAAAAT 59.389 33.333 0.00 0.00 36.18 1.82
142 143 6.938596 TCTGCTTCTTCTCTCATGAATGAAAA 59.061 34.615 0.00 2.15 36.18 2.29
143 144 6.470278 TCTGCTTCTTCTCTCATGAATGAAA 58.530 36.000 0.00 0.00 36.18 2.69
144 145 6.046290 TCTGCTTCTTCTCTCATGAATGAA 57.954 37.500 0.00 3.52 36.18 2.57
145 146 5.672421 TCTGCTTCTTCTCTCATGAATGA 57.328 39.130 0.00 0.00 35.16 2.57
146 147 6.403418 GGTTTCTGCTTCTTCTCTCATGAATG 60.403 42.308 0.00 0.00 0.00 2.67
147 148 5.647225 GGTTTCTGCTTCTTCTCTCATGAAT 59.353 40.000 0.00 0.00 0.00 2.57
148 149 4.999950 GGTTTCTGCTTCTTCTCTCATGAA 59.000 41.667 0.00 0.00 0.00 2.57
149 150 4.040829 TGGTTTCTGCTTCTTCTCTCATGA 59.959 41.667 0.00 0.00 0.00 3.07
150 151 4.321718 TGGTTTCTGCTTCTTCTCTCATG 58.678 43.478 0.00 0.00 0.00 3.07
151 152 4.630644 TGGTTTCTGCTTCTTCTCTCAT 57.369 40.909 0.00 0.00 0.00 2.90
152 153 4.040829 TCATGGTTTCTGCTTCTTCTCTCA 59.959 41.667 0.00 0.00 0.00 3.27
153 154 4.573900 TCATGGTTTCTGCTTCTTCTCTC 58.426 43.478 0.00 0.00 0.00 3.20
154 155 4.630644 TCATGGTTTCTGCTTCTTCTCT 57.369 40.909 0.00 0.00 0.00 3.10
155 156 4.759183 ACTTCATGGTTTCTGCTTCTTCTC 59.241 41.667 0.00 0.00 0.00 2.87
156 157 4.518211 CACTTCATGGTTTCTGCTTCTTCT 59.482 41.667 0.00 0.00 0.00 2.85
157 158 4.320788 CCACTTCATGGTTTCTGCTTCTTC 60.321 45.833 0.00 0.00 44.46 2.87
158 159 3.571401 CCACTTCATGGTTTCTGCTTCTT 59.429 43.478 0.00 0.00 44.46 2.52
159 160 3.152341 CCACTTCATGGTTTCTGCTTCT 58.848 45.455 0.00 0.00 44.46 2.85
160 161 3.565905 CCACTTCATGGTTTCTGCTTC 57.434 47.619 0.00 0.00 44.46 3.86
164 165 9.901385 GCTAAAGCATCCACTTCATGGTTTCTG 62.901 44.444 11.88 8.61 44.71 3.02
165 166 8.018529 GCTAAAGCATCCACTTCATGGTTTCT 62.019 42.308 11.88 0.00 44.71 2.52
166 167 5.904984 GCTAAAGCATCCACTTCATGGTTTC 60.905 44.000 11.88 0.00 44.71 2.78
168 169 3.445096 GCTAAAGCATCCACTTCATGGTT 59.555 43.478 0.00 0.00 44.58 3.67
169 170 3.019564 GCTAAAGCATCCACTTCATGGT 58.980 45.455 0.00 0.00 44.58 3.55
170 171 3.705043 GCTAAAGCATCCACTTCATGG 57.295 47.619 0.00 0.00 45.19 3.66
209 210 8.947115 GCAAACCAAACATATCTACCTATATCC 58.053 37.037 0.00 0.00 0.00 2.59
210 211 9.726438 AGCAAACCAAACATATCTACCTATATC 57.274 33.333 0.00 0.00 0.00 1.63
211 212 9.726438 GAGCAAACCAAACATATCTACCTATAT 57.274 33.333 0.00 0.00 0.00 0.86
212 213 8.710239 TGAGCAAACCAAACATATCTACCTATA 58.290 33.333 0.00 0.00 0.00 1.31
213 214 7.573710 TGAGCAAACCAAACATATCTACCTAT 58.426 34.615 0.00 0.00 0.00 2.57
214 215 6.953101 TGAGCAAACCAAACATATCTACCTA 58.047 36.000 0.00 0.00 0.00 3.08
215 216 5.815581 TGAGCAAACCAAACATATCTACCT 58.184 37.500 0.00 0.00 0.00 3.08
216 217 6.322491 GTTGAGCAAACCAAACATATCTACC 58.678 40.000 0.00 0.00 32.13 3.18
230 231 4.158384 CAATATCACGTGGTTGAGCAAAC 58.842 43.478 17.00 0.00 38.12 2.93
231 232 3.818210 ACAATATCACGTGGTTGAGCAAA 59.182 39.130 25.21 2.49 0.00 3.68
232 233 3.407698 ACAATATCACGTGGTTGAGCAA 58.592 40.909 25.21 3.16 0.00 3.91
233 234 3.052455 ACAATATCACGTGGTTGAGCA 57.948 42.857 25.21 3.82 0.00 4.26
234 235 4.491924 CGTTACAATATCACGTGGTTGAGC 60.492 45.833 25.21 16.56 0.00 4.26
235 236 4.860352 TCGTTACAATATCACGTGGTTGAG 59.140 41.667 25.21 12.36 35.40 3.02
236 237 4.807443 TCGTTACAATATCACGTGGTTGA 58.193 39.130 25.21 5.17 35.40 3.18
237 238 5.712217 ATCGTTACAATATCACGTGGTTG 57.288 39.130 17.00 19.00 35.40 3.77
238 239 5.292589 GGAATCGTTACAATATCACGTGGTT 59.707 40.000 17.00 6.43 35.40 3.67
239 240 4.807304 GGAATCGTTACAATATCACGTGGT 59.193 41.667 17.00 12.05 35.40 4.16
240 241 4.085261 CGGAATCGTTACAATATCACGTGG 60.085 45.833 17.00 0.90 35.40 4.94
241 242 4.085261 CCGGAATCGTTACAATATCACGTG 60.085 45.833 9.94 9.94 35.40 4.49
242 243 4.046462 CCGGAATCGTTACAATATCACGT 58.954 43.478 0.00 0.00 35.40 4.49
243 244 4.046462 ACCGGAATCGTTACAATATCACG 58.954 43.478 9.46 0.00 35.18 4.35
244 245 5.045215 TCACCGGAATCGTTACAATATCAC 58.955 41.667 9.46 0.00 33.95 3.06
245 246 5.265350 TCACCGGAATCGTTACAATATCA 57.735 39.130 9.46 0.00 33.95 2.15
246 247 5.751990 AGTTCACCGGAATCGTTACAATATC 59.248 40.000 9.46 0.00 35.05 1.63
247 248 5.667466 AGTTCACCGGAATCGTTACAATAT 58.333 37.500 9.46 0.00 35.05 1.28
248 249 5.075858 AGTTCACCGGAATCGTTACAATA 57.924 39.130 9.46 0.00 35.05 1.90
249 250 3.934068 AGTTCACCGGAATCGTTACAAT 58.066 40.909 9.46 0.00 35.05 2.71
250 251 3.389925 AGTTCACCGGAATCGTTACAA 57.610 42.857 9.46 0.00 35.05 2.41
251 252 3.389925 AAGTTCACCGGAATCGTTACA 57.610 42.857 9.46 0.00 35.05 2.41
252 253 6.091169 TCAAATAAGTTCACCGGAATCGTTAC 59.909 38.462 9.46 0.00 35.05 2.50
253 254 6.164876 TCAAATAAGTTCACCGGAATCGTTA 58.835 36.000 9.46 0.14 35.05 3.18
254 255 4.998672 TCAAATAAGTTCACCGGAATCGTT 59.001 37.500 9.46 0.00 35.05 3.85
255 256 4.571919 TCAAATAAGTTCACCGGAATCGT 58.428 39.130 9.46 0.00 35.05 3.73
256 257 5.539582 TTCAAATAAGTTCACCGGAATCG 57.460 39.130 9.46 0.00 35.05 3.34
257 258 7.065803 TCTCATTCAAATAAGTTCACCGGAATC 59.934 37.037 9.46 0.00 35.05 2.52
258 259 6.884295 TCTCATTCAAATAAGTTCACCGGAAT 59.116 34.615 9.46 0.00 35.05 3.01
259 260 6.234920 TCTCATTCAAATAAGTTCACCGGAA 58.765 36.000 9.46 0.00 0.00 4.30
260 261 5.800296 TCTCATTCAAATAAGTTCACCGGA 58.200 37.500 9.46 0.00 0.00 5.14
261 262 6.494893 TTCTCATTCAAATAAGTTCACCGG 57.505 37.500 0.00 0.00 0.00 5.28
262 263 6.901887 CGATTCTCATTCAAATAAGTTCACCG 59.098 38.462 0.00 0.00 0.00 4.94
263 264 7.752695 ACGATTCTCATTCAAATAAGTTCACC 58.247 34.615 0.00 0.00 0.00 4.02
264 265 9.612620 AAACGATTCTCATTCAAATAAGTTCAC 57.387 29.630 0.00 0.00 0.00 3.18
270 271 9.849166 GGGTAAAAACGATTCTCATTCAAATAA 57.151 29.630 0.00 0.00 0.00 1.40
271 272 8.463607 GGGGTAAAAACGATTCTCATTCAAATA 58.536 33.333 0.00 0.00 0.00 1.40
272 273 7.320399 GGGGTAAAAACGATTCTCATTCAAAT 58.680 34.615 0.00 0.00 0.00 2.32
273 274 6.294843 GGGGGTAAAAACGATTCTCATTCAAA 60.295 38.462 0.00 0.00 0.00 2.69
274 275 5.184287 GGGGGTAAAAACGATTCTCATTCAA 59.816 40.000 0.00 0.00 0.00 2.69
275 276 4.703093 GGGGGTAAAAACGATTCTCATTCA 59.297 41.667 0.00 0.00 0.00 2.57
276 277 5.244785 GGGGGTAAAAACGATTCTCATTC 57.755 43.478 0.00 0.00 0.00 2.67
301 302 5.423931 TGAACCAAAGAAGGCCTTAGTTTTT 59.576 36.000 20.54 13.64 33.92 1.94
302 303 4.959839 TGAACCAAAGAAGGCCTTAGTTTT 59.040 37.500 20.54 16.11 33.92 2.43
303 304 4.542697 TGAACCAAAGAAGGCCTTAGTTT 58.457 39.130 20.54 17.94 33.92 2.66
304 305 4.178956 TGAACCAAAGAAGGCCTTAGTT 57.821 40.909 20.54 16.32 35.46 2.24
305 306 3.876309 TGAACCAAAGAAGGCCTTAGT 57.124 42.857 20.54 5.91 34.00 2.24
306 307 4.884164 CCTATGAACCAAAGAAGGCCTTAG 59.116 45.833 20.54 7.26 34.00 2.18
307 308 4.538490 TCCTATGAACCAAAGAAGGCCTTA 59.462 41.667 20.54 0.00 34.00 2.69
308 309 3.333680 TCCTATGAACCAAAGAAGGCCTT 59.666 43.478 20.65 20.65 36.47 4.35
309 310 2.919602 TCCTATGAACCAAAGAAGGCCT 59.080 45.455 0.00 0.00 0.00 5.19
310 311 3.366052 TCCTATGAACCAAAGAAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
311 312 4.098501 CCAATCCTATGAACCAAAGAAGGC 59.901 45.833 0.00 0.00 0.00 4.35
312 313 5.509498 TCCAATCCTATGAACCAAAGAAGG 58.491 41.667 0.00 0.00 0.00 3.46
313 314 7.466746 TTTCCAATCCTATGAACCAAAGAAG 57.533 36.000 0.00 0.00 0.00 2.85
314 315 7.847711 TTTTCCAATCCTATGAACCAAAGAA 57.152 32.000 0.00 0.00 0.00 2.52
315 316 7.673504 TGATTTTCCAATCCTATGAACCAAAGA 59.326 33.333 0.00 0.00 38.50 2.52
316 317 7.839907 TGATTTTCCAATCCTATGAACCAAAG 58.160 34.615 0.00 0.00 38.50 2.77
317 318 7.789202 TGATTTTCCAATCCTATGAACCAAA 57.211 32.000 0.00 0.00 38.50 3.28
318 319 7.976414 ATGATTTTCCAATCCTATGAACCAA 57.024 32.000 0.00 0.00 38.50 3.67
319 320 7.725397 CCTATGATTTTCCAATCCTATGAACCA 59.275 37.037 0.00 0.00 38.50 3.67
320 321 7.944554 TCCTATGATTTTCCAATCCTATGAACC 59.055 37.037 0.00 0.00 38.50 3.62
321 322 8.924511 TCCTATGATTTTCCAATCCTATGAAC 57.075 34.615 0.00 0.00 38.50 3.18
326 327 9.405369 TCCTATTCCTATGATTTTCCAATCCTA 57.595 33.333 0.00 0.00 38.50 2.94
327 328 8.293027 TCCTATTCCTATGATTTTCCAATCCT 57.707 34.615 0.00 0.00 38.50 3.24
328 329 8.940397 TTCCTATTCCTATGATTTTCCAATCC 57.060 34.615 0.00 0.00 38.50 3.01
330 331 9.942526 ACTTTCCTATTCCTATGATTTTCCAAT 57.057 29.630 0.00 0.00 0.00 3.16
331 332 9.408648 GACTTTCCTATTCCTATGATTTTCCAA 57.591 33.333 0.00 0.00 0.00 3.53
332 333 8.556589 TGACTTTCCTATTCCTATGATTTTCCA 58.443 33.333 0.00 0.00 0.00 3.53
333 334 8.980481 TGACTTTCCTATTCCTATGATTTTCC 57.020 34.615 0.00 0.00 0.00 3.13
370 371 5.183331 GCATAGGATTTGAGATGCATGTCAT 59.817 40.000 25.41 13.07 43.36 3.06
371 372 4.517832 GCATAGGATTTGAGATGCATGTCA 59.482 41.667 21.70 21.70 43.36 3.58
372 373 5.044428 GCATAGGATTTGAGATGCATGTC 57.956 43.478 16.63 16.63 43.36 3.06
390 391 9.224267 GCATCTCTTTTTCTATTCCTATGCATA 57.776 33.333 6.20 6.20 36.79 3.14
391 392 7.176340 GGCATCTCTTTTTCTATTCCTATGCAT 59.824 37.037 3.79 3.79 38.14 3.96
392 393 6.488006 GGCATCTCTTTTTCTATTCCTATGCA 59.512 38.462 0.00 0.00 38.14 3.96
393 394 6.072230 GGGCATCTCTTTTTCTATTCCTATGC 60.072 42.308 0.00 0.00 36.22 3.14
394 395 7.230027 AGGGCATCTCTTTTTCTATTCCTATG 58.770 38.462 0.00 0.00 0.00 2.23
395 396 7.399674 AGGGCATCTCTTTTTCTATTCCTAT 57.600 36.000 0.00 0.00 0.00 2.57
396 397 6.831664 AGGGCATCTCTTTTTCTATTCCTA 57.168 37.500 0.00 0.00 0.00 2.94
397 398 5.723860 AGGGCATCTCTTTTTCTATTCCT 57.276 39.130 0.00 0.00 0.00 3.36
398 399 6.378280 TCAAAGGGCATCTCTTTTTCTATTCC 59.622 38.462 0.00 0.00 32.72 3.01
399 400 7.396540 TCAAAGGGCATCTCTTTTTCTATTC 57.603 36.000 0.00 0.00 32.72 1.75
400 401 7.968014 ATCAAAGGGCATCTCTTTTTCTATT 57.032 32.000 0.00 0.00 32.72 1.73
401 402 7.616935 TGAATCAAAGGGCATCTCTTTTTCTAT 59.383 33.333 5.65 0.00 32.72 1.98
402 403 6.947733 TGAATCAAAGGGCATCTCTTTTTCTA 59.052 34.615 5.65 0.00 32.72 2.10
403 404 5.776716 TGAATCAAAGGGCATCTCTTTTTCT 59.223 36.000 5.65 0.00 32.72 2.52
404 405 5.866092 GTGAATCAAAGGGCATCTCTTTTTC 59.134 40.000 0.00 0.00 32.72 2.29
405 406 5.305128 TGTGAATCAAAGGGCATCTCTTTTT 59.695 36.000 0.00 0.00 32.72 1.94
406 407 4.834496 TGTGAATCAAAGGGCATCTCTTTT 59.166 37.500 0.00 0.00 32.72 2.27
407 408 4.410099 TGTGAATCAAAGGGCATCTCTTT 58.590 39.130 0.00 0.00 35.09 2.52
408 409 4.038271 TGTGAATCAAAGGGCATCTCTT 57.962 40.909 0.00 0.00 0.00 2.85
409 410 3.726557 TGTGAATCAAAGGGCATCTCT 57.273 42.857 0.00 0.00 0.00 3.10
410 411 4.996788 AATGTGAATCAAAGGGCATCTC 57.003 40.909 0.00 0.00 0.00 2.75
411 412 9.812347 TTATATAATGTGAATCAAAGGGCATCT 57.188 29.630 0.00 0.00 0.00 2.90
467 468 9.189156 CCTATCCTTCACATTTCATAGGAAAAA 57.811 33.333 6.65 0.00 45.52 1.94
468 469 8.556589 TCCTATCCTTCACATTTCATAGGAAAA 58.443 33.333 6.65 0.00 45.52 2.29
469 470 8.101309 TCCTATCCTTCACATTTCATAGGAAA 57.899 34.615 4.85 4.85 46.36 3.13
470 471 7.690454 TCCTATCCTTCACATTTCATAGGAA 57.310 36.000 3.47 0.00 39.17 3.36
471 472 7.568738 TCTTCCTATCCTTCACATTTCATAGGA 59.431 37.037 2.01 2.01 39.98 2.94
472 473 7.739825 TCTTCCTATCCTTCACATTTCATAGG 58.260 38.462 0.00 0.00 35.93 2.57
473 474 9.790344 ATTCTTCCTATCCTTCACATTTCATAG 57.210 33.333 0.00 0.00 0.00 2.23
475 476 9.129532 GAATTCTTCCTATCCTTCACATTTCAT 57.870 33.333 0.00 0.00 0.00 2.57
476 477 7.557719 GGAATTCTTCCTATCCTTCACATTTCA 59.442 37.037 5.23 0.00 46.57 2.69
477 478 7.935520 GGAATTCTTCCTATCCTTCACATTTC 58.064 38.462 5.23 0.00 46.57 2.17
478 479 7.888250 GGAATTCTTCCTATCCTTCACATTT 57.112 36.000 5.23 0.00 46.57 2.32
500 501 9.799106 GGAATGAAATCCTATTTCTATGAAGGA 57.201 33.333 12.25 0.00 42.17 3.36
515 516 7.095229 GCTTTTTGGTTTGTAGGAATGAAATCC 60.095 37.037 0.00 0.00 39.96 3.01
516 517 7.657354 AGCTTTTTGGTTTGTAGGAATGAAATC 59.343 33.333 0.00 0.00 0.00 2.17
517 518 7.508687 AGCTTTTTGGTTTGTAGGAATGAAAT 58.491 30.769 0.00 0.00 0.00 2.17
518 519 6.883744 AGCTTTTTGGTTTGTAGGAATGAAA 58.116 32.000 0.00 0.00 0.00 2.69
519 520 6.323739 AGAGCTTTTTGGTTTGTAGGAATGAA 59.676 34.615 0.00 0.00 0.00 2.57
520 521 5.833131 AGAGCTTTTTGGTTTGTAGGAATGA 59.167 36.000 0.00 0.00 0.00 2.57
521 522 5.922544 CAGAGCTTTTTGGTTTGTAGGAATG 59.077 40.000 0.00 0.00 0.00 2.67
522 523 5.833131 TCAGAGCTTTTTGGTTTGTAGGAAT 59.167 36.000 0.00 0.00 31.30 3.01
523 524 5.197451 TCAGAGCTTTTTGGTTTGTAGGAA 58.803 37.500 0.00 0.00 31.30 3.36
524 525 4.787551 TCAGAGCTTTTTGGTTTGTAGGA 58.212 39.130 0.00 0.00 31.30 2.94
525 526 5.507985 CCTTCAGAGCTTTTTGGTTTGTAGG 60.508 44.000 0.00 0.00 38.63 3.18
526 527 5.299279 TCCTTCAGAGCTTTTTGGTTTGTAG 59.701 40.000 0.00 0.00 31.30 2.74
527 528 5.197451 TCCTTCAGAGCTTTTTGGTTTGTA 58.803 37.500 0.00 0.00 31.30 2.41
528 529 4.023291 TCCTTCAGAGCTTTTTGGTTTGT 58.977 39.130 0.00 0.00 31.30 2.83
529 530 4.654091 TCCTTCAGAGCTTTTTGGTTTG 57.346 40.909 0.00 0.00 0.00 2.93
530 531 5.876651 ATTCCTTCAGAGCTTTTTGGTTT 57.123 34.783 0.00 0.00 0.00 3.27
531 532 5.876651 AATTCCTTCAGAGCTTTTTGGTT 57.123 34.783 0.00 0.00 0.00 3.67
532 533 5.876651 AAATTCCTTCAGAGCTTTTTGGT 57.123 34.783 0.00 0.00 0.00 3.67
582 583 9.933723 CTTTGATTTGGAGAAATTTTGTAGGAT 57.066 29.630 0.00 0.00 31.58 3.24
583 584 8.367156 CCTTTGATTTGGAGAAATTTTGTAGGA 58.633 33.333 0.00 0.00 31.58 2.94
584 585 8.367156 TCCTTTGATTTGGAGAAATTTTGTAGG 58.633 33.333 0.00 0.00 31.58 3.18
596 597 2.521547 AGGCCTCCTTTGATTTGGAG 57.478 50.000 0.00 0.00 46.91 3.86
597 598 4.396357 TTTAGGCCTCCTTTGATTTGGA 57.604 40.909 9.68 0.00 34.61 3.53
598 599 4.711355 TGATTTAGGCCTCCTTTGATTTGG 59.289 41.667 9.68 0.00 34.61 3.28
599 600 5.163478 CCTGATTTAGGCCTCCTTTGATTTG 60.163 44.000 9.68 0.00 40.38 2.32
600 601 4.958581 CCTGATTTAGGCCTCCTTTGATTT 59.041 41.667 9.68 0.00 40.38 2.17
601 602 4.540715 CCTGATTTAGGCCTCCTTTGATT 58.459 43.478 9.68 0.00 40.38 2.57
602 603 4.176120 CCTGATTTAGGCCTCCTTTGAT 57.824 45.455 9.68 0.00 40.38 2.57
603 604 3.652057 CCTGATTTAGGCCTCCTTTGA 57.348 47.619 9.68 0.00 40.38 2.69
625 626 1.675552 TCCTATTTGCCGCCTTTAGC 58.324 50.000 0.00 0.00 38.52 3.09
626 627 4.499696 CCAATTCCTATTTGCCGCCTTTAG 60.500 45.833 0.00 0.00 0.00 1.85
627 628 3.383185 CCAATTCCTATTTGCCGCCTTTA 59.617 43.478 0.00 0.00 0.00 1.85
628 629 2.168313 CCAATTCCTATTTGCCGCCTTT 59.832 45.455 0.00 0.00 0.00 3.11
629 630 1.756538 CCAATTCCTATTTGCCGCCTT 59.243 47.619 0.00 0.00 0.00 4.35
630 631 1.402787 CCAATTCCTATTTGCCGCCT 58.597 50.000 0.00 0.00 0.00 5.52
631 632 0.249447 GCCAATTCCTATTTGCCGCC 60.249 55.000 0.00 0.00 0.00 6.13
632 633 0.459489 TGCCAATTCCTATTTGCCGC 59.541 50.000 0.00 0.00 32.82 6.53
633 634 1.533756 CGTGCCAATTCCTATTTGCCG 60.534 52.381 0.00 0.00 32.82 5.69
634 635 1.802508 GCGTGCCAATTCCTATTTGCC 60.803 52.381 0.00 0.00 32.82 4.52
635 636 1.135141 TGCGTGCCAATTCCTATTTGC 60.135 47.619 0.00 0.00 34.03 3.68
636 637 2.937469 TGCGTGCCAATTCCTATTTG 57.063 45.000 0.00 0.00 0.00 2.32
637 638 3.509575 TCTTTGCGTGCCAATTCCTATTT 59.490 39.130 0.00 0.00 32.49 1.40
638 639 3.088532 TCTTTGCGTGCCAATTCCTATT 58.911 40.909 0.00 0.00 32.49 1.73
639 640 2.722094 TCTTTGCGTGCCAATTCCTAT 58.278 42.857 0.00 0.00 32.49 2.57
640 641 2.192664 TCTTTGCGTGCCAATTCCTA 57.807 45.000 0.00 0.00 32.49 2.94
641 642 1.474077 GATCTTTGCGTGCCAATTCCT 59.526 47.619 0.00 0.00 32.49 3.36
642 643 1.202114 TGATCTTTGCGTGCCAATTCC 59.798 47.619 0.00 0.00 32.49 3.01
643 644 2.253603 GTGATCTTTGCGTGCCAATTC 58.746 47.619 0.00 0.00 32.49 2.17
644 645 1.401409 CGTGATCTTTGCGTGCCAATT 60.401 47.619 0.00 0.00 32.49 2.32
645 646 0.168788 CGTGATCTTTGCGTGCCAAT 59.831 50.000 0.00 0.00 32.49 3.16
646 647 1.573932 CGTGATCTTTGCGTGCCAA 59.426 52.632 0.00 0.00 0.00 4.52
647 648 2.965147 GCGTGATCTTTGCGTGCCA 61.965 57.895 0.00 0.00 0.00 4.92
648 649 2.202349 GCGTGATCTTTGCGTGCC 60.202 61.111 0.00 0.00 0.00 5.01
649 650 1.793613 GTGCGTGATCTTTGCGTGC 60.794 57.895 0.00 0.00 0.00 5.34
650 651 1.067693 TAGTGCGTGATCTTTGCGTG 58.932 50.000 0.00 0.00 0.00 5.34
651 652 1.068474 GTAGTGCGTGATCTTTGCGT 58.932 50.000 0.00 0.00 0.00 5.24
652 653 1.350193 AGTAGTGCGTGATCTTTGCG 58.650 50.000 0.00 0.00 0.00 4.85
653 654 2.279136 CGTAGTAGTGCGTGATCTTTGC 59.721 50.000 0.00 0.00 0.00 3.68
654 655 2.279136 GCGTAGTAGTGCGTGATCTTTG 59.721 50.000 9.83 0.00 33.75 2.77
655 656 2.527100 GCGTAGTAGTGCGTGATCTTT 58.473 47.619 9.83 0.00 33.75 2.52
656 657 1.202268 GGCGTAGTAGTGCGTGATCTT 60.202 52.381 9.83 0.00 33.75 2.40
657 658 0.381089 GGCGTAGTAGTGCGTGATCT 59.619 55.000 9.83 0.00 33.75 2.75
658 659 0.381089 AGGCGTAGTAGTGCGTGATC 59.619 55.000 9.83 0.00 33.75 2.92
659 660 1.332997 GTAGGCGTAGTAGTGCGTGAT 59.667 52.381 9.83 0.00 33.75 3.06
660 661 0.729116 GTAGGCGTAGTAGTGCGTGA 59.271 55.000 9.83 0.00 33.75 4.35
661 662 0.588233 CGTAGGCGTAGTAGTGCGTG 60.588 60.000 9.83 0.00 33.75 5.34
662 663 1.709147 CCGTAGGCGTAGTAGTGCGT 61.709 60.000 9.83 0.00 46.14 5.24
663 664 1.010350 CCGTAGGCGTAGTAGTGCG 60.010 63.158 3.42 3.42 46.14 5.34
695 696 1.271876 GGTTACGATTTCGACGGGAC 58.728 55.000 7.01 0.00 43.02 4.46
696 697 0.887247 TGGTTACGATTTCGACGGGA 59.113 50.000 7.01 0.00 43.02 5.14
720 721 1.167781 TTTTTCCGGACGTTGGGCTC 61.168 55.000 1.83 0.00 0.00 4.70
915 916 1.133884 GGGAAGGTAAAGAATCGGGGG 60.134 57.143 0.00 0.00 0.00 5.40
1434 1450 3.736224 TAGAGGACGCGGGGGACT 61.736 66.667 12.47 5.70 0.00 3.85
2145 2184 4.736896 GCGTGTCCGTCCCTCACC 62.737 72.222 0.00 0.00 36.15 4.02
2277 2324 1.149148 GTCTCAGCAAAACCTCGACC 58.851 55.000 0.00 0.00 0.00 4.79
2440 2499 3.591196 TTTGGCGGTGTTATAGTACGT 57.409 42.857 0.00 0.00 0.00 3.57
2442 2501 7.795272 CGATTATTTTTGGCGGTGTTATAGTAC 59.205 37.037 0.00 0.00 0.00 2.73
2485 2545 6.207928 TGATGTGCACTACTGAAAACAAATG 58.792 36.000 19.41 0.00 0.00 2.32
2486 2546 6.389830 TGATGTGCACTACTGAAAACAAAT 57.610 33.333 19.41 0.00 0.00 2.32
2487 2547 5.826601 TGATGTGCACTACTGAAAACAAA 57.173 34.783 19.41 0.00 0.00 2.83
2488 2548 7.174772 ACATATGATGTGCACTACTGAAAACAA 59.825 33.333 19.41 0.00 43.01 2.83
2496 2556 6.291377 CCCTTAACATATGATGTGCACTACT 58.709 40.000 19.41 2.35 44.07 2.57
2499 2559 4.079787 ACCCCTTAACATATGATGTGCACT 60.080 41.667 19.41 3.19 44.07 4.40
2503 2563 4.144297 CCCACCCCTTAACATATGATGTG 58.856 47.826 10.38 1.77 44.07 3.21
2505 2565 3.500289 CCCCCACCCCTTAACATATGATG 60.500 52.174 10.38 0.00 0.00 3.07
2514 2574 0.121608 TCTAAGCCCCCACCCCTTAA 59.878 55.000 0.00 0.00 0.00 1.85
2526 2586 2.813754 TGCACTTGACACAATCTAAGCC 59.186 45.455 0.00 0.00 0.00 4.35
2527 2587 4.691860 ATGCACTTGACACAATCTAAGC 57.308 40.909 0.00 0.00 0.00 3.09
2609 2673 2.216898 GATTCCTGAAATCTGGAGCCG 58.783 52.381 8.74 0.00 43.41 5.52
2651 2721 1.480545 GGGCCCATCAACGCTTTAAAT 59.519 47.619 19.95 0.00 0.00 1.40
2765 2995 0.177141 CGAGACGAAGGGGCCAAATA 59.823 55.000 4.39 0.00 0.00 1.40
2792 3022 3.586470 TTTGACAGGTTCTTTGGCCTA 57.414 42.857 3.32 0.00 33.07 3.93
2863 3104 2.132762 CAACCGGAGACAGTAACACAC 58.867 52.381 9.46 0.00 0.00 3.82
2864 3105 1.069513 CCAACCGGAGACAGTAACACA 59.930 52.381 9.46 0.00 0.00 3.72
2892 3133 1.400846 CTGCTGCAATGGAGTGATCAC 59.599 52.381 18.47 18.47 0.00 3.06
2902 3144 1.735386 ACACTCTAGCTGCTGCAATG 58.265 50.000 18.42 8.21 42.74 2.82
2903 3145 2.082231 CAACACTCTAGCTGCTGCAAT 58.918 47.619 18.42 0.14 42.74 3.56
2908 3150 3.007290 TCATTCACAACACTCTAGCTGCT 59.993 43.478 7.57 7.57 0.00 4.24
2937 3179 0.107410 AACAAAGCCCACGTCTGACA 60.107 50.000 8.73 0.00 0.00 3.58
2947 3189 0.888619 GGTAAGCCTGAACAAAGCCC 59.111 55.000 0.00 0.00 0.00 5.19
2966 3212 3.093566 CGTAATCCTCGGATCTGCG 57.906 57.895 0.00 2.40 33.08 5.18
2980 3226 0.748367 TGCAAGTTGTGTGGCCGTAA 60.748 50.000 4.48 0.00 0.00 3.18
2984 3230 2.028043 GCTGCAAGTTGTGTGGCC 59.972 61.111 4.48 0.00 35.30 5.36
2992 3238 4.483311 GAGTTAGTACTACGCTGCAAGTT 58.517 43.478 0.91 0.00 33.84 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.