Multiple sequence alignment - TraesCS2A01G371900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G371900 chr2A 100.000 2261 0 0 1 2261 614383539 614385799 0.000000e+00 4176.0
1 TraesCS2A01G371900 chr2D 90.052 1528 72 39 612 2105 472860504 472861985 0.000000e+00 1906.0
2 TraesCS2A01G371900 chr2B 91.181 1236 57 14 612 1815 552028484 552029699 0.000000e+00 1631.0
3 TraesCS2A01G371900 chr2B 90.421 261 17 5 1849 2105 552029699 552029955 1.000000e-88 337.0
4 TraesCS2A01G371900 chr2B 92.308 78 5 1 538 615 552028377 552028453 2.370000e-20 110.0
5 TraesCS2A01G371900 chr6D 91.509 106 6 1 747 849 400462253 400462148 2.340000e-30 143.0
6 TraesCS2A01G371900 chr4D 100.000 33 0 0 1227 1259 503611359 503611327 6.740000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G371900 chr2A 614383539 614385799 2260 False 4176.000000 4176 100.000000 1 2261 1 chr2A.!!$F1 2260
1 TraesCS2A01G371900 chr2D 472860504 472861985 1481 False 1906.000000 1906 90.052000 612 2105 1 chr2D.!!$F1 1493
2 TraesCS2A01G371900 chr2B 552028377 552029955 1578 False 692.666667 1631 91.303333 538 2105 3 chr2B.!!$F1 1567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.102481 CTACGCTCACTAACGGGCAT 59.898 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1696 0.255033 AATGACCCTAAACGCCCTCC 59.745 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.124351 TTCCTCTGTACGGGCGCG 62.124 66.667 22.69 22.69 0.00 6.86
36 37 4.161976 CGAGAACGAGCGAGCGGA 62.162 66.667 0.00 0.00 42.66 5.54
37 38 2.409651 GAGAACGAGCGAGCGGAT 59.590 61.111 0.00 0.00 35.12 4.18
38 39 1.941734 GAGAACGAGCGAGCGGATG 60.942 63.158 0.00 0.00 35.12 3.51
39 40 2.102357 GAACGAGCGAGCGGATGA 59.898 61.111 0.00 0.00 35.12 2.92
40 41 1.941734 GAACGAGCGAGCGGATGAG 60.942 63.158 0.00 0.00 35.12 2.90
41 42 4.560856 ACGAGCGAGCGGATGAGC 62.561 66.667 0.00 0.00 35.12 4.26
42 43 4.559229 CGAGCGAGCGGATGAGCA 62.559 66.667 0.00 0.00 40.15 4.26
43 44 2.657944 GAGCGAGCGGATGAGCAG 60.658 66.667 0.00 0.00 40.15 4.24
44 45 4.887987 AGCGAGCGGATGAGCAGC 62.888 66.667 0.00 0.00 41.14 5.25
46 47 4.559229 CGAGCGGATGAGCAGCGA 62.559 66.667 0.00 0.00 42.89 4.93
47 48 2.657944 GAGCGGATGAGCAGCGAG 60.658 66.667 0.00 0.00 42.89 5.03
48 49 4.887987 AGCGGATGAGCAGCGAGC 62.888 66.667 0.00 0.00 42.89 5.03
57 58 2.580867 GCAGCGAGCGTACCTGAG 60.581 66.667 0.81 0.00 0.00 3.35
58 59 2.580867 CAGCGAGCGTACCTGAGC 60.581 66.667 0.00 0.00 0.00 4.26
59 60 3.827898 AGCGAGCGTACCTGAGCC 61.828 66.667 0.00 0.00 0.00 4.70
61 62 3.506096 CGAGCGTACCTGAGCCGA 61.506 66.667 0.00 0.00 31.91 5.54
62 63 2.102553 GAGCGTACCTGAGCCGAC 59.897 66.667 0.00 0.00 0.00 4.79
63 64 3.736482 GAGCGTACCTGAGCCGACG 62.736 68.421 0.00 0.00 38.32 5.12
64 65 3.807538 GCGTACCTGAGCCGACGA 61.808 66.667 0.00 0.00 37.50 4.20
65 66 2.099831 CGTACCTGAGCCGACGAC 59.900 66.667 0.00 0.00 37.50 4.34
66 67 2.099831 GTACCTGAGCCGACGACG 59.900 66.667 0.00 0.00 39.43 5.12
67 68 2.046988 TACCTGAGCCGACGACGA 60.047 61.111 9.28 0.00 42.66 4.20
68 69 2.104859 TACCTGAGCCGACGACGAG 61.105 63.158 9.28 0.00 42.66 4.18
69 70 4.838486 CCTGAGCCGACGACGAGC 62.838 72.222 9.28 10.50 42.66 5.03
70 71 4.103103 CTGAGCCGACGACGAGCA 62.103 66.667 18.49 9.13 42.66 4.26
71 72 4.103103 TGAGCCGACGACGAGCAG 62.103 66.667 18.49 1.14 42.66 4.24
91 92 2.272471 GGTGCTTCCCCCTGCTAC 59.728 66.667 0.00 0.00 0.00 3.58
92 93 2.125106 GTGCTTCCCCCTGCTACG 60.125 66.667 0.00 0.00 0.00 3.51
93 94 4.096003 TGCTTCCCCCTGCTACGC 62.096 66.667 0.00 0.00 0.00 4.42
94 95 4.858680 GCTTCCCCCTGCTACGCC 62.859 72.222 0.00 0.00 0.00 5.68
95 96 3.083997 CTTCCCCCTGCTACGCCT 61.084 66.667 0.00 0.00 0.00 5.52
96 97 3.081409 TTCCCCCTGCTACGCCTC 61.081 66.667 0.00 0.00 0.00 4.70
102 103 4.577246 CTGCTACGCCTCCGCCTC 62.577 72.222 0.00 0.00 38.22 4.70
104 105 3.917760 GCTACGCCTCCGCCTCAT 61.918 66.667 0.00 0.00 38.22 2.90
105 106 2.028190 CTACGCCTCCGCCTCATG 59.972 66.667 0.00 0.00 38.22 3.07
106 107 2.758327 TACGCCTCCGCCTCATGT 60.758 61.111 0.00 0.00 38.22 3.21
107 108 2.960957 CTACGCCTCCGCCTCATGTG 62.961 65.000 0.00 0.00 38.22 3.21
109 110 4.783621 GCCTCCGCCTCATGTGCA 62.784 66.667 9.91 0.00 0.00 4.57
110 111 2.821366 CCTCCGCCTCATGTGCAC 60.821 66.667 10.75 10.75 0.00 4.57
111 112 2.821366 CTCCGCCTCATGTGCACC 60.821 66.667 15.69 0.00 0.00 5.01
112 113 3.320879 CTCCGCCTCATGTGCACCT 62.321 63.158 15.69 0.23 0.00 4.00
113 114 2.360350 CCGCCTCATGTGCACCTT 60.360 61.111 15.69 0.00 0.00 3.50
114 115 1.973281 CCGCCTCATGTGCACCTTT 60.973 57.895 15.69 0.00 0.00 3.11
115 116 1.503542 CGCCTCATGTGCACCTTTC 59.496 57.895 15.69 0.00 0.00 2.62
116 117 1.236616 CGCCTCATGTGCACCTTTCA 61.237 55.000 15.69 0.00 0.00 2.69
117 118 0.961019 GCCTCATGTGCACCTTTCAA 59.039 50.000 15.69 0.00 0.00 2.69
118 119 1.547372 GCCTCATGTGCACCTTTCAAT 59.453 47.619 15.69 0.00 0.00 2.57
119 120 2.673043 GCCTCATGTGCACCTTTCAATG 60.673 50.000 15.69 10.24 0.00 2.82
120 121 2.821378 CCTCATGTGCACCTTTCAATGA 59.179 45.455 15.69 14.01 0.00 2.57
121 122 3.366679 CCTCATGTGCACCTTTCAATGAC 60.367 47.826 15.69 0.00 0.00 3.06
122 123 2.226200 TCATGTGCACCTTTCAATGACG 59.774 45.455 15.69 0.00 0.00 4.35
123 124 1.674359 TGTGCACCTTTCAATGACGT 58.326 45.000 15.69 0.00 0.00 4.34
124 125 2.020720 TGTGCACCTTTCAATGACGTT 58.979 42.857 15.69 0.00 0.00 3.99
125 126 2.032799 TGTGCACCTTTCAATGACGTTC 59.967 45.455 15.69 0.00 0.00 3.95
126 127 2.032799 GTGCACCTTTCAATGACGTTCA 59.967 45.455 5.22 0.00 0.00 3.18
127 128 2.685388 TGCACCTTTCAATGACGTTCAA 59.315 40.909 0.00 0.00 0.00 2.69
128 129 3.042887 GCACCTTTCAATGACGTTCAAC 58.957 45.455 0.00 0.00 0.00 3.18
156 157 4.225497 GCTGCGAGCCCTACAAAT 57.775 55.556 0.00 0.00 34.48 2.32
157 158 2.017752 GCTGCGAGCCCTACAAATC 58.982 57.895 0.00 0.00 34.48 2.17
158 159 1.766143 GCTGCGAGCCCTACAAATCG 61.766 60.000 0.00 0.00 34.48 3.34
159 160 1.153449 TGCGAGCCCTACAAATCGG 60.153 57.895 0.00 0.00 35.76 4.18
160 161 1.887707 GCGAGCCCTACAAATCGGG 60.888 63.158 0.00 0.00 43.60 5.14
161 162 1.820581 CGAGCCCTACAAATCGGGA 59.179 57.895 0.00 0.00 43.44 5.14
162 163 0.249489 CGAGCCCTACAAATCGGGAG 60.249 60.000 0.00 0.00 43.44 4.30
163 164 0.106894 GAGCCCTACAAATCGGGAGG 59.893 60.000 0.00 0.00 43.44 4.30
165 166 1.837090 CCCTACAAATCGGGAGGGG 59.163 63.158 2.29 0.00 44.41 4.79
166 167 0.693092 CCCTACAAATCGGGAGGGGA 60.693 60.000 2.29 0.00 44.41 4.81
167 168 0.759346 CCTACAAATCGGGAGGGGAG 59.241 60.000 0.00 0.00 0.00 4.30
168 169 0.759346 CTACAAATCGGGAGGGGAGG 59.241 60.000 0.00 0.00 0.00 4.30
169 170 0.693092 TACAAATCGGGAGGGGAGGG 60.693 60.000 0.00 0.00 0.00 4.30
170 171 2.368329 AAATCGGGAGGGGAGGGG 60.368 66.667 0.00 0.00 0.00 4.79
171 172 2.968462 AAATCGGGAGGGGAGGGGA 61.968 63.158 0.00 0.00 0.00 4.81
172 173 2.916553 AAATCGGGAGGGGAGGGGAG 62.917 65.000 0.00 0.00 0.00 4.30
177 178 4.179599 GAGGGGAGGGGAGGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
178 179 4.761304 AGGGGAGGGGAGGGGAGA 62.761 72.222 0.00 0.00 0.00 3.71
179 180 4.179599 GGGGAGGGGAGGGGAGAG 62.180 77.778 0.00 0.00 0.00 3.20
180 181 4.179599 GGGAGGGGAGGGGAGAGG 62.180 77.778 0.00 0.00 0.00 3.69
181 182 4.179599 GGAGGGGAGGGGAGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
182 183 4.179599 GAGGGGAGGGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
183 184 4.761304 AGGGGAGGGGAGAGGGGA 62.761 72.222 0.00 0.00 0.00 4.81
184 185 3.707189 GGGGAGGGGAGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
185 186 2.712746 GGGAGGGGAGAGGGGAAT 59.287 66.667 0.00 0.00 0.00 3.01
186 187 1.772156 GGGAGGGGAGAGGGGAATG 60.772 68.421 0.00 0.00 0.00 2.67
187 188 1.318380 GGAGGGGAGAGGGGAATGA 59.682 63.158 0.00 0.00 0.00 2.57
188 189 0.327576 GGAGGGGAGAGGGGAATGAA 60.328 60.000 0.00 0.00 0.00 2.57
189 190 1.596496 GAGGGGAGAGGGGAATGAAA 58.404 55.000 0.00 0.00 0.00 2.69
190 191 2.139382 GAGGGGAGAGGGGAATGAAAT 58.861 52.381 0.00 0.00 0.00 2.17
191 192 1.855599 AGGGGAGAGGGGAATGAAATG 59.144 52.381 0.00 0.00 0.00 2.32
192 193 1.852965 GGGGAGAGGGGAATGAAATGA 59.147 52.381 0.00 0.00 0.00 2.57
193 194 2.158549 GGGGAGAGGGGAATGAAATGAG 60.159 54.545 0.00 0.00 0.00 2.90
194 195 2.158549 GGGAGAGGGGAATGAAATGAGG 60.159 54.545 0.00 0.00 0.00 3.86
195 196 2.511637 GGAGAGGGGAATGAAATGAGGT 59.488 50.000 0.00 0.00 0.00 3.85
196 197 3.549794 GAGAGGGGAATGAAATGAGGTG 58.450 50.000 0.00 0.00 0.00 4.00
197 198 3.192944 AGAGGGGAATGAAATGAGGTGA 58.807 45.455 0.00 0.00 0.00 4.02
198 199 3.201708 AGAGGGGAATGAAATGAGGTGAG 59.798 47.826 0.00 0.00 0.00 3.51
199 200 2.027385 GGGGAATGAAATGAGGTGAGC 58.973 52.381 0.00 0.00 0.00 4.26
200 201 1.672881 GGGAATGAAATGAGGTGAGCG 59.327 52.381 0.00 0.00 0.00 5.03
201 202 2.632377 GGAATGAAATGAGGTGAGCGA 58.368 47.619 0.00 0.00 0.00 4.93
202 203 3.209410 GGAATGAAATGAGGTGAGCGAT 58.791 45.455 0.00 0.00 0.00 4.58
203 204 3.003068 GGAATGAAATGAGGTGAGCGATG 59.997 47.826 0.00 0.00 0.00 3.84
204 205 3.548745 ATGAAATGAGGTGAGCGATGA 57.451 42.857 0.00 0.00 0.00 2.92
205 206 2.621338 TGAAATGAGGTGAGCGATGAC 58.379 47.619 0.00 0.00 0.00 3.06
206 207 1.590238 GAAATGAGGTGAGCGATGACG 59.410 52.381 0.00 0.00 42.93 4.35
207 208 0.179100 AATGAGGTGAGCGATGACGG 60.179 55.000 0.00 0.00 40.15 4.79
208 209 2.021068 ATGAGGTGAGCGATGACGGG 62.021 60.000 0.00 0.00 40.15 5.28
209 210 2.680352 AGGTGAGCGATGACGGGT 60.680 61.111 0.00 0.00 40.15 5.28
210 211 2.509336 GGTGAGCGATGACGGGTG 60.509 66.667 0.00 0.00 40.15 4.61
211 212 3.188786 GTGAGCGATGACGGGTGC 61.189 66.667 0.00 0.00 40.15 5.01
212 213 3.381983 TGAGCGATGACGGGTGCT 61.382 61.111 0.00 0.00 41.11 4.40
213 214 2.887568 GAGCGATGACGGGTGCTG 60.888 66.667 0.00 0.00 37.91 4.41
214 215 3.356639 GAGCGATGACGGGTGCTGA 62.357 63.158 0.00 0.00 37.91 4.26
215 216 2.434185 GCGATGACGGGTGCTGAA 60.434 61.111 0.00 0.00 40.15 3.02
216 217 2.456119 GCGATGACGGGTGCTGAAG 61.456 63.158 0.00 0.00 40.15 3.02
217 218 1.811266 CGATGACGGGTGCTGAAGG 60.811 63.158 0.00 0.00 35.72 3.46
218 219 1.450312 GATGACGGGTGCTGAAGGG 60.450 63.158 0.00 0.00 0.00 3.95
219 220 2.876368 GATGACGGGTGCTGAAGGGG 62.876 65.000 0.00 0.00 0.00 4.79
220 221 4.410400 GACGGGTGCTGAAGGGGG 62.410 72.222 0.00 0.00 0.00 5.40
234 235 2.663196 GGGGGAGGAAGTGACACG 59.337 66.667 0.00 0.00 0.00 4.49
235 236 1.911766 GGGGGAGGAAGTGACACGA 60.912 63.158 0.00 0.00 0.00 4.35
236 237 1.477685 GGGGGAGGAAGTGACACGAA 61.478 60.000 0.00 0.00 0.00 3.85
237 238 0.395312 GGGGAGGAAGTGACACGAAA 59.605 55.000 0.00 0.00 0.00 3.46
238 239 1.003233 GGGGAGGAAGTGACACGAAAT 59.997 52.381 0.00 0.00 0.00 2.17
239 240 2.552373 GGGGAGGAAGTGACACGAAATT 60.552 50.000 0.00 0.00 0.00 1.82
240 241 2.742589 GGGAGGAAGTGACACGAAATTC 59.257 50.000 0.00 0.00 0.00 2.17
241 242 2.412089 GGAGGAAGTGACACGAAATTCG 59.588 50.000 14.35 14.35 46.93 3.34
242 243 3.314553 GAGGAAGTGACACGAAATTCGA 58.685 45.455 22.92 0.00 43.74 3.71
243 244 3.724374 AGGAAGTGACACGAAATTCGAA 58.276 40.909 22.92 0.00 43.74 3.71
244 245 4.124238 AGGAAGTGACACGAAATTCGAAA 58.876 39.130 22.92 1.39 43.74 3.46
245 246 4.025145 AGGAAGTGACACGAAATTCGAAAC 60.025 41.667 22.92 13.05 43.74 2.78
246 247 3.872560 AGTGACACGAAATTCGAAACC 57.127 42.857 22.92 8.36 43.74 3.27
247 248 2.220133 AGTGACACGAAATTCGAAACCG 59.780 45.455 22.92 8.73 43.74 4.44
248 249 1.070443 TGACACGAAATTCGAAACCGC 60.070 47.619 22.92 5.60 43.74 5.68
249 250 0.236449 ACACGAAATTCGAAACCGCC 59.764 50.000 22.92 0.00 43.74 6.13
250 251 0.453782 CACGAAATTCGAAACCGCCC 60.454 55.000 22.92 0.00 43.74 6.13
251 252 0.885596 ACGAAATTCGAAACCGCCCA 60.886 50.000 22.92 0.00 43.74 5.36
252 253 0.453782 CGAAATTCGAAACCGCCCAC 60.454 55.000 10.18 0.00 43.74 4.61
253 254 0.109458 GAAATTCGAAACCGCCCACC 60.109 55.000 0.00 0.00 0.00 4.61
254 255 1.858372 AAATTCGAAACCGCCCACCG 61.858 55.000 0.00 0.00 0.00 4.94
266 267 2.364579 CCACCGCCCCCACTACTA 60.365 66.667 0.00 0.00 0.00 1.82
267 268 2.432300 CCACCGCCCCCACTACTAG 61.432 68.421 0.00 0.00 0.00 2.57
268 269 1.684734 CACCGCCCCCACTACTAGT 60.685 63.158 0.00 0.00 0.00 2.57
269 270 1.380920 ACCGCCCCCACTACTAGTC 60.381 63.158 0.00 0.00 0.00 2.59
270 271 1.076192 CCGCCCCCACTACTAGTCT 60.076 63.158 0.00 0.00 0.00 3.24
271 272 0.184451 CCGCCCCCACTACTAGTCTA 59.816 60.000 0.00 0.00 0.00 2.59
272 273 1.316651 CGCCCCCACTACTAGTCTAC 58.683 60.000 0.00 0.00 0.00 2.59
273 274 1.316651 GCCCCCACTACTAGTCTACG 58.683 60.000 0.00 0.00 0.00 3.51
274 275 1.316651 CCCCCACTACTAGTCTACGC 58.683 60.000 0.00 0.00 0.00 4.42
275 276 1.133853 CCCCCACTACTAGTCTACGCT 60.134 57.143 0.00 0.00 0.00 5.07
276 277 2.220313 CCCCACTACTAGTCTACGCTC 58.780 57.143 0.00 0.00 0.00 5.03
277 278 2.421107 CCCCACTACTAGTCTACGCTCA 60.421 54.545 0.00 0.00 0.00 4.26
278 279 2.613133 CCCACTACTAGTCTACGCTCAC 59.387 54.545 0.00 0.00 0.00 3.51
279 280 3.533547 CCACTACTAGTCTACGCTCACT 58.466 50.000 0.00 0.00 0.00 3.41
280 281 4.442612 CCCACTACTAGTCTACGCTCACTA 60.443 50.000 0.00 0.00 0.00 2.74
281 282 5.114780 CCACTACTAGTCTACGCTCACTAA 58.885 45.833 0.00 0.00 0.00 2.24
282 283 5.006552 CCACTACTAGTCTACGCTCACTAAC 59.993 48.000 0.00 0.00 0.00 2.34
283 284 4.803088 ACTACTAGTCTACGCTCACTAACG 59.197 45.833 0.00 0.00 0.00 3.18
284 285 2.935201 ACTAGTCTACGCTCACTAACGG 59.065 50.000 0.00 0.00 0.00 4.44
285 286 1.093159 AGTCTACGCTCACTAACGGG 58.907 55.000 0.00 0.00 0.00 5.28
286 287 0.525029 GTCTACGCTCACTAACGGGC 60.525 60.000 0.00 0.00 0.00 6.13
287 288 0.961857 TCTACGCTCACTAACGGGCA 60.962 55.000 0.00 0.00 0.00 5.36
288 289 0.102481 CTACGCTCACTAACGGGCAT 59.898 55.000 0.00 0.00 0.00 4.40
289 290 1.335810 CTACGCTCACTAACGGGCATA 59.664 52.381 0.00 0.00 0.00 3.14
290 291 0.179119 ACGCTCACTAACGGGCATAC 60.179 55.000 0.00 0.00 0.00 2.39
291 292 0.874607 CGCTCACTAACGGGCATACC 60.875 60.000 0.00 0.00 0.00 2.73
292 293 0.464452 GCTCACTAACGGGCATACCT 59.536 55.000 0.00 0.00 36.97 3.08
293 294 1.684983 GCTCACTAACGGGCATACCTA 59.315 52.381 0.00 0.00 36.97 3.08
294 295 2.545322 GCTCACTAACGGGCATACCTAC 60.545 54.545 0.00 0.00 36.97 3.18
295 296 2.691526 CTCACTAACGGGCATACCTACA 59.308 50.000 0.00 0.00 36.97 2.74
296 297 2.428171 TCACTAACGGGCATACCTACAC 59.572 50.000 0.00 0.00 36.97 2.90
297 298 2.166870 CACTAACGGGCATACCTACACA 59.833 50.000 0.00 0.00 36.97 3.72
298 299 2.429610 ACTAACGGGCATACCTACACAG 59.570 50.000 0.00 0.00 36.97 3.66
299 300 1.272807 AACGGGCATACCTACACAGT 58.727 50.000 0.00 0.00 36.97 3.55
300 301 0.822164 ACGGGCATACCTACACAGTC 59.178 55.000 0.00 0.00 36.97 3.51
301 302 1.112113 CGGGCATACCTACACAGTCT 58.888 55.000 0.00 0.00 36.97 3.24
302 303 2.304092 CGGGCATACCTACACAGTCTA 58.696 52.381 0.00 0.00 36.97 2.59
303 304 2.891580 CGGGCATACCTACACAGTCTAT 59.108 50.000 0.00 0.00 36.97 1.98
304 305 3.305403 CGGGCATACCTACACAGTCTATG 60.305 52.174 0.00 0.00 36.97 2.23
305 306 3.555168 GGGCATACCTACACAGTCTATGC 60.555 52.174 0.00 0.00 36.58 3.14
306 307 3.555168 GGCATACCTACACAGTCTATGCC 60.555 52.174 10.41 10.41 43.07 4.40
307 308 3.069586 GCATACCTACACAGTCTATGCCA 59.930 47.826 0.00 0.00 33.91 4.92
308 309 4.262635 GCATACCTACACAGTCTATGCCAT 60.263 45.833 0.00 0.00 33.91 4.40
309 310 5.473931 CATACCTACACAGTCTATGCCATC 58.526 45.833 0.00 0.00 0.00 3.51
310 311 3.647636 ACCTACACAGTCTATGCCATCT 58.352 45.455 0.00 0.00 0.00 2.90
311 312 3.639094 ACCTACACAGTCTATGCCATCTC 59.361 47.826 0.00 0.00 0.00 2.75
312 313 3.638627 CCTACACAGTCTATGCCATCTCA 59.361 47.826 0.00 0.00 0.00 3.27
313 314 3.815856 ACACAGTCTATGCCATCTCAG 57.184 47.619 0.00 0.00 0.00 3.35
314 315 2.433604 ACACAGTCTATGCCATCTCAGG 59.566 50.000 0.00 0.00 0.00 3.86
322 323 4.181010 CCATCTCAGGCCCACCGG 62.181 72.222 0.00 0.00 42.76 5.28
363 364 4.778143 GCACTACCGGCCCAGGTG 62.778 72.222 12.27 9.90 45.54 4.00
364 365 3.319198 CACTACCGGCCCAGGTGT 61.319 66.667 12.27 5.96 45.54 4.16
365 366 3.319198 ACTACCGGCCCAGGTGTG 61.319 66.667 12.27 7.62 45.54 3.82
366 367 4.778143 CTACCGGCCCAGGTGTGC 62.778 72.222 12.27 0.00 45.54 4.57
373 374 3.402681 CCCAGGTGTGCGGGAGAT 61.403 66.667 0.00 0.00 46.34 2.75
374 375 2.124983 CCAGGTGTGCGGGAGATG 60.125 66.667 0.00 0.00 0.00 2.90
375 376 2.821366 CAGGTGTGCGGGAGATGC 60.821 66.667 0.00 0.00 0.00 3.91
376 377 4.457496 AGGTGTGCGGGAGATGCG 62.457 66.667 0.00 0.00 34.24 4.73
439 440 4.592192 CGTGCGATGGGAGCCGAT 62.592 66.667 0.00 0.00 32.73 4.18
440 441 2.663188 GTGCGATGGGAGCCGATC 60.663 66.667 1.81 1.81 0.00 3.69
441 442 4.284860 TGCGATGGGAGCCGATCG 62.285 66.667 23.87 23.87 43.49 3.69
442 443 3.978491 GCGATGGGAGCCGATCGA 61.978 66.667 29.73 0.00 43.36 3.59
443 444 2.728180 CGATGGGAGCCGATCGAA 59.272 61.111 23.87 0.00 43.36 3.71
444 445 1.661821 CGATGGGAGCCGATCGAAC 60.662 63.158 23.87 8.44 43.36 3.95
445 446 1.661821 GATGGGAGCCGATCGAACG 60.662 63.158 18.66 8.26 0.00 3.95
453 454 3.411808 CCGATCGAACGGTTCTTGA 57.588 52.632 24.44 9.66 46.70 3.02
454 455 1.269166 CCGATCGAACGGTTCTTGAG 58.731 55.000 24.44 7.57 46.70 3.02
455 456 0.640768 CGATCGAACGGTTCTTGAGC 59.359 55.000 10.26 10.75 0.00 4.26
479 480 3.166421 TCGAGACGAGACACGAGC 58.834 61.111 0.00 0.00 45.77 5.03
480 481 2.276120 CGAGACGAGACACGAGCG 60.276 66.667 0.00 0.00 45.77 5.03
481 482 2.574736 GAGACGAGACACGAGCGC 60.575 66.667 0.00 0.00 45.77 5.92
482 483 3.310253 GAGACGAGACACGAGCGCA 62.310 63.158 11.47 0.00 45.77 6.09
483 484 3.166630 GACGAGACACGAGCGCAC 61.167 66.667 11.47 0.96 45.77 5.34
496 497 2.275997 CGCACGCGCACTAATGTG 60.276 61.111 5.73 7.40 46.37 3.21
497 498 2.860293 GCACGCGCACTAATGTGT 59.140 55.556 5.73 0.00 45.44 3.72
498 499 1.679187 CGCACGCGCACTAATGTGTA 61.679 55.000 5.73 0.00 45.44 2.90
499 500 0.650512 GCACGCGCACTAATGTGTAT 59.349 50.000 5.73 0.00 45.44 2.29
500 501 1.062002 GCACGCGCACTAATGTGTATT 59.938 47.619 5.73 0.00 45.44 1.89
501 502 2.475519 GCACGCGCACTAATGTGTATTT 60.476 45.455 5.73 0.00 45.44 1.40
502 503 3.342269 CACGCGCACTAATGTGTATTTC 58.658 45.455 5.73 0.00 45.44 2.17
503 504 2.350498 ACGCGCACTAATGTGTATTTCC 59.650 45.455 5.73 0.00 45.44 3.13
504 505 2.596575 CGCGCACTAATGTGTATTTCCG 60.597 50.000 8.75 0.00 45.44 4.30
505 506 2.350498 GCGCACTAATGTGTATTTCCGT 59.650 45.455 0.30 0.00 45.44 4.69
506 507 3.181514 GCGCACTAATGTGTATTTCCGTT 60.182 43.478 0.30 0.00 45.44 4.44
507 508 4.670735 GCGCACTAATGTGTATTTCCGTTT 60.671 41.667 0.30 0.00 45.44 3.60
508 509 5.387279 CGCACTAATGTGTATTTCCGTTTT 58.613 37.500 0.00 0.00 45.44 2.43
509 510 6.535811 CGCACTAATGTGTATTTCCGTTTTA 58.464 36.000 0.00 0.00 45.44 1.52
510 511 7.184106 CGCACTAATGTGTATTTCCGTTTTAT 58.816 34.615 0.00 0.00 45.44 1.40
511 512 8.329583 CGCACTAATGTGTATTTCCGTTTTATA 58.670 33.333 0.00 0.00 45.44 0.98
525 526 9.896263 TTTCCGTTTTATATTTACTTTCGCTTT 57.104 25.926 0.00 0.00 0.00 3.51
526 527 8.883789 TCCGTTTTATATTTACTTTCGCTTTG 57.116 30.769 0.00 0.00 0.00 2.77
527 528 8.505625 TCCGTTTTATATTTACTTTCGCTTTGT 58.494 29.630 0.00 0.00 0.00 2.83
528 529 9.757859 CCGTTTTATATTTACTTTCGCTTTGTA 57.242 29.630 0.00 0.00 0.00 2.41
532 533 9.763465 TTTATATTTACTTTCGCTTTGTAGTGC 57.237 29.630 0.00 0.00 0.00 4.40
533 534 5.941948 ATTTACTTTCGCTTTGTAGTGCT 57.058 34.783 0.00 0.00 0.00 4.40
534 535 8.712285 ATATTTACTTTCGCTTTGTAGTGCTA 57.288 30.769 0.00 0.00 0.00 3.49
535 536 7.611213 ATTTACTTTCGCTTTGTAGTGCTAT 57.389 32.000 0.00 0.00 0.00 2.97
536 537 6.642683 TTACTTTCGCTTTGTAGTGCTATC 57.357 37.500 0.00 0.00 0.00 2.08
542 543 4.095334 TCGCTTTGTAGTGCTATCGAACTA 59.905 41.667 0.00 0.00 0.00 2.24
572 573 1.475213 GCTAATGAAACCGGGGAGAGG 60.475 57.143 6.32 0.00 0.00 3.69
605 606 2.570415 TACAAACGGCCATCCAAGAA 57.430 45.000 2.24 0.00 0.00 2.52
607 608 2.247358 ACAAACGGCCATCCAAGAAAT 58.753 42.857 2.24 0.00 0.00 2.17
608 609 3.426615 ACAAACGGCCATCCAAGAAATA 58.573 40.909 2.24 0.00 0.00 1.40
648 682 2.917701 TCTTGCACAACACAACACAG 57.082 45.000 0.00 0.00 0.00 3.66
670 709 4.694037 AGACACATCACATCACATGAGTTG 59.306 41.667 0.00 0.00 0.00 3.16
673 712 1.825090 TCACATCACATGAGTTGGCC 58.175 50.000 0.00 0.00 0.00 5.36
693 736 1.134907 CAGCCAGGCCTGCTATTTTTG 60.135 52.381 28.39 12.08 36.81 2.44
737 784 2.305009 CCCTCAAAGCCTCAATCATCC 58.695 52.381 0.00 0.00 0.00 3.51
832 879 0.246635 AGTAGCACCTACGGCACAAG 59.753 55.000 0.00 0.00 41.37 3.16
925 986 1.411394 TACGCGCACAAGTACAGAAC 58.589 50.000 5.73 0.00 0.00 3.01
982 1047 4.888325 CCGCTCCTCCCCTCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
986 1051 1.768077 CTCCTCCCCTCCCATCCAC 60.768 68.421 0.00 0.00 0.00 4.02
992 1057 1.307343 CCCTCCCATCCACCTCTGT 60.307 63.158 0.00 0.00 0.00 3.41
1051 1116 3.997064 CTGGCGGTGCTTCTCCTCG 62.997 68.421 0.00 0.00 0.00 4.63
1338 1414 0.956410 AGCGAGCGACTGAGTAGTGT 60.956 55.000 0.00 0.00 37.25 3.55
1340 1416 0.517755 CGAGCGACTGAGTAGTGTGT 59.482 55.000 0.00 0.00 37.25 3.72
1341 1417 1.726251 CGAGCGACTGAGTAGTGTGTG 60.726 57.143 0.00 0.00 37.25 3.82
1342 1418 0.598562 AGCGACTGAGTAGTGTGTGG 59.401 55.000 0.00 0.00 37.25 4.17
1359 1435 5.753438 GTGTGTGGACGATACAATCACATAT 59.247 40.000 0.00 0.00 39.93 1.78
1408 1484 2.155279 CATTAGATCGAGCTCCGGAGA 58.845 52.381 35.69 15.06 39.14 3.71
1523 1602 6.199937 ACAGCAGGACAATTATTGATTGAC 57.800 37.500 12.28 2.19 46.59 3.18
1524 1603 5.948162 ACAGCAGGACAATTATTGATTGACT 59.052 36.000 12.28 0.96 46.59 3.41
1525 1604 6.127814 ACAGCAGGACAATTATTGATTGACTG 60.128 38.462 12.28 13.94 46.59 3.51
1526 1605 6.094464 CAGCAGGACAATTATTGATTGACTGA 59.906 38.462 22.03 0.00 46.59 3.41
1607 1696 4.378459 GGCTGTCCTCAGTGTTTAATTTCG 60.378 45.833 0.00 0.00 43.05 3.46
1642 1731 3.281359 ATTTCGCGTTGGCCAAGGC 62.281 57.895 40.33 40.33 45.57 4.35
1790 1881 0.748005 CTTTACCCCCTCACATGGCG 60.748 60.000 0.00 0.00 0.00 5.69
1795 1886 1.299648 CCCCTCACATGGCGAGAAA 59.700 57.895 14.23 0.00 31.84 2.52
1796 1887 0.322456 CCCCTCACATGGCGAGAAAA 60.322 55.000 14.23 0.00 31.84 2.29
1865 1963 2.877154 AGGAGATAGGCAGGAAAGGA 57.123 50.000 0.00 0.00 0.00 3.36
1879 1977 2.007608 GAAAGGATTGGCCGTGTAGTC 58.992 52.381 0.00 0.00 43.43 2.59
1899 1997 0.310854 CGGCTGGAAGGTCAAACAAC 59.689 55.000 0.00 0.00 0.00 3.32
1995 2093 2.865119 TGTCAGGAGAACATGCATGT 57.135 45.000 26.61 26.61 44.20 3.21
2026 2124 1.741401 CGGTGCTGATTTCCGCAGA 60.741 57.895 0.00 0.00 36.73 4.26
2054 2155 0.690192 TTTCAGGAACAGATGGGCGA 59.310 50.000 0.00 0.00 0.00 5.54
2089 2193 2.810164 ACCGAGCTAAGTCTCCTTTCT 58.190 47.619 0.00 0.00 31.89 2.52
2119 2223 8.306761 ACTTTTGACATACAAAGATTCAATCCC 58.693 33.333 5.34 0.00 46.93 3.85
2120 2224 6.773976 TTGACATACAAAGATTCAATCCCC 57.226 37.500 0.00 0.00 35.39 4.81
2121 2225 4.881273 TGACATACAAAGATTCAATCCCCG 59.119 41.667 0.00 0.00 0.00 5.73
2122 2226 3.632145 ACATACAAAGATTCAATCCCCGC 59.368 43.478 0.00 0.00 0.00 6.13
2123 2227 2.214376 ACAAAGATTCAATCCCCGCA 57.786 45.000 0.00 0.00 0.00 5.69
2124 2228 2.524306 ACAAAGATTCAATCCCCGCAA 58.476 42.857 0.00 0.00 0.00 4.85
2125 2229 2.896685 ACAAAGATTCAATCCCCGCAAA 59.103 40.909 0.00 0.00 0.00 3.68
2126 2230 3.323403 ACAAAGATTCAATCCCCGCAAAA 59.677 39.130 0.00 0.00 0.00 2.44
2127 2231 3.874392 AAGATTCAATCCCCGCAAAAG 57.126 42.857 0.00 0.00 0.00 2.27
2128 2232 3.085952 AGATTCAATCCCCGCAAAAGA 57.914 42.857 0.00 0.00 0.00 2.52
2129 2233 3.430453 AGATTCAATCCCCGCAAAAGAA 58.570 40.909 0.00 0.00 0.00 2.52
2130 2234 3.831911 AGATTCAATCCCCGCAAAAGAAA 59.168 39.130 0.00 0.00 0.00 2.52
2131 2235 3.378911 TTCAATCCCCGCAAAAGAAAC 57.621 42.857 0.00 0.00 0.00 2.78
2132 2236 2.311463 TCAATCCCCGCAAAAGAAACA 58.689 42.857 0.00 0.00 0.00 2.83
2133 2237 2.896685 TCAATCCCCGCAAAAGAAACAT 59.103 40.909 0.00 0.00 0.00 2.71
2134 2238 4.082845 TCAATCCCCGCAAAAGAAACATA 58.917 39.130 0.00 0.00 0.00 2.29
2135 2239 4.082463 TCAATCCCCGCAAAAGAAACATAC 60.082 41.667 0.00 0.00 0.00 2.39
2136 2240 1.807742 TCCCCGCAAAAGAAACATACG 59.192 47.619 0.00 0.00 0.00 3.06
2137 2241 1.807742 CCCCGCAAAAGAAACATACGA 59.192 47.619 0.00 0.00 0.00 3.43
2138 2242 2.226912 CCCCGCAAAAGAAACATACGAA 59.773 45.455 0.00 0.00 0.00 3.85
2139 2243 3.488489 CCCGCAAAAGAAACATACGAAG 58.512 45.455 0.00 0.00 0.00 3.79
2140 2244 3.187637 CCCGCAAAAGAAACATACGAAGA 59.812 43.478 0.00 0.00 0.00 2.87
2141 2245 4.142687 CCCGCAAAAGAAACATACGAAGAT 60.143 41.667 0.00 0.00 0.00 2.40
2142 2246 5.390613 CCGCAAAAGAAACATACGAAGATT 58.609 37.500 0.00 0.00 0.00 2.40
2143 2247 5.508224 CCGCAAAAGAAACATACGAAGATTC 59.492 40.000 0.00 0.00 0.00 2.52
2144 2248 6.077197 CGCAAAAGAAACATACGAAGATTCA 58.923 36.000 0.00 0.00 0.00 2.57
2145 2249 6.247165 CGCAAAAGAAACATACGAAGATTCAG 59.753 38.462 0.00 0.00 0.00 3.02
2146 2250 7.298122 GCAAAAGAAACATACGAAGATTCAGA 58.702 34.615 0.00 0.00 0.00 3.27
2147 2251 7.479916 GCAAAAGAAACATACGAAGATTCAGAG 59.520 37.037 0.00 0.00 0.00 3.35
2148 2252 7.602517 AAAGAAACATACGAAGATTCAGAGG 57.397 36.000 0.00 0.00 0.00 3.69
2149 2253 6.531503 AGAAACATACGAAGATTCAGAGGA 57.468 37.500 0.00 0.00 0.00 3.71
2150 2254 6.334202 AGAAACATACGAAGATTCAGAGGAC 58.666 40.000 0.00 0.00 0.00 3.85
2151 2255 4.294416 ACATACGAAGATTCAGAGGACG 57.706 45.455 0.00 0.00 0.00 4.79
2152 2256 3.945921 ACATACGAAGATTCAGAGGACGA 59.054 43.478 0.00 0.00 0.00 4.20
2153 2257 4.580995 ACATACGAAGATTCAGAGGACGAT 59.419 41.667 0.00 0.00 0.00 3.73
2154 2258 5.763698 ACATACGAAGATTCAGAGGACGATA 59.236 40.000 0.00 0.00 0.00 2.92
2155 2259 6.262496 ACATACGAAGATTCAGAGGACGATAA 59.738 38.462 0.00 0.00 0.00 1.75
2156 2260 5.578005 ACGAAGATTCAGAGGACGATAAA 57.422 39.130 0.00 0.00 0.00 1.40
2157 2261 5.962433 ACGAAGATTCAGAGGACGATAAAA 58.038 37.500 0.00 0.00 0.00 1.52
2158 2262 6.395629 ACGAAGATTCAGAGGACGATAAAAA 58.604 36.000 0.00 0.00 0.00 1.94
2180 2284 7.429636 AAAAAGGAAAATCAAGTCATGCATG 57.570 32.000 21.07 21.07 0.00 4.06
2181 2285 5.733620 AAGGAAAATCAAGTCATGCATGT 57.266 34.783 25.43 5.20 0.00 3.21
2182 2286 5.733620 AGGAAAATCAAGTCATGCATGTT 57.266 34.783 25.43 11.46 0.00 2.71
2183 2287 6.105397 AGGAAAATCAAGTCATGCATGTTT 57.895 33.333 25.43 16.24 0.00 2.83
2184 2288 7.230849 AGGAAAATCAAGTCATGCATGTTTA 57.769 32.000 25.43 4.41 0.00 2.01
2185 2289 7.844009 AGGAAAATCAAGTCATGCATGTTTAT 58.156 30.769 25.43 8.50 0.00 1.40
2186 2290 7.977853 AGGAAAATCAAGTCATGCATGTTTATC 59.022 33.333 25.43 15.18 0.00 1.75
2187 2291 7.760794 GGAAAATCAAGTCATGCATGTTTATCA 59.239 33.333 25.43 2.81 0.00 2.15
2188 2292 9.309516 GAAAATCAAGTCATGCATGTTTATCAT 57.690 29.630 25.43 9.69 37.22 2.45
2200 2304 4.799564 TGTTTATCATGGGCTGAAAACC 57.200 40.909 0.00 0.00 37.44 3.27
2201 2305 4.415596 TGTTTATCATGGGCTGAAAACCT 58.584 39.130 0.00 0.00 37.44 3.50
2202 2306 4.220382 TGTTTATCATGGGCTGAAAACCTG 59.780 41.667 0.00 0.00 37.44 4.00
2203 2307 2.610438 ATCATGGGCTGAAAACCTGT 57.390 45.000 0.00 0.00 37.44 4.00
2204 2308 2.380064 TCATGGGCTGAAAACCTGTT 57.620 45.000 0.00 0.00 0.00 3.16
2205 2309 3.517296 TCATGGGCTGAAAACCTGTTA 57.483 42.857 0.00 0.00 0.00 2.41
2206 2310 4.046286 TCATGGGCTGAAAACCTGTTAT 57.954 40.909 0.00 0.00 0.00 1.89
2207 2311 4.016444 TCATGGGCTGAAAACCTGTTATC 58.984 43.478 0.00 0.00 0.00 1.75
2208 2312 3.517296 TGGGCTGAAAACCTGTTATCA 57.483 42.857 0.00 0.00 0.00 2.15
2209 2313 3.153919 TGGGCTGAAAACCTGTTATCAC 58.846 45.455 0.00 0.00 0.00 3.06
2210 2314 3.153919 GGGCTGAAAACCTGTTATCACA 58.846 45.455 0.00 0.00 0.00 3.58
2211 2315 3.763897 GGGCTGAAAACCTGTTATCACAT 59.236 43.478 0.00 0.00 30.39 3.21
2212 2316 4.947388 GGGCTGAAAACCTGTTATCACATA 59.053 41.667 0.00 0.00 30.39 2.29
2213 2317 5.417580 GGGCTGAAAACCTGTTATCACATAA 59.582 40.000 0.00 0.00 30.39 1.90
2214 2318 6.071616 GGGCTGAAAACCTGTTATCACATAAA 60.072 38.462 0.00 0.00 30.39 1.40
2215 2319 6.806739 GGCTGAAAACCTGTTATCACATAAAC 59.193 38.462 0.00 0.00 30.39 2.01
2216 2320 7.367285 GCTGAAAACCTGTTATCACATAAACA 58.633 34.615 0.00 0.00 30.39 2.83
2217 2321 8.028938 GCTGAAAACCTGTTATCACATAAACAT 58.971 33.333 0.00 0.00 30.39 2.71
2218 2322 9.345517 CTGAAAACCTGTTATCACATAAACATG 57.654 33.333 0.00 0.00 30.39 3.21
2219 2323 8.855110 TGAAAACCTGTTATCACATAAACATGT 58.145 29.630 0.00 0.00 34.64 3.21
2220 2324 9.341899 GAAAACCTGTTATCACATAAACATGTC 57.658 33.333 0.00 0.00 31.37 3.06
2221 2325 7.994425 AACCTGTTATCACATAAACATGTCA 57.006 32.000 0.00 0.00 31.37 3.58
2222 2326 7.994425 ACCTGTTATCACATAAACATGTCAA 57.006 32.000 0.00 0.00 31.37 3.18
2223 2327 8.402798 ACCTGTTATCACATAAACATGTCAAA 57.597 30.769 0.00 0.00 31.37 2.69
2224 2328 8.855110 ACCTGTTATCACATAAACATGTCAAAA 58.145 29.630 0.00 0.00 31.37 2.44
2225 2329 9.689976 CCTGTTATCACATAAACATGTCAAAAA 57.310 29.630 0.00 0.00 31.37 1.94
2232 2336 9.868277 TCACATAAACATGTCAAAAAGTTTCTT 57.132 25.926 0.00 0.00 35.90 2.52
2237 2341 7.734538 AACATGTCAAAAAGTTTCTTACACG 57.265 32.000 0.00 0.00 0.00 4.49
2238 2342 7.079182 ACATGTCAAAAAGTTTCTTACACGA 57.921 32.000 0.00 0.00 0.00 4.35
2239 2343 6.964934 ACATGTCAAAAAGTTTCTTACACGAC 59.035 34.615 0.00 0.00 0.00 4.34
2240 2344 5.552807 TGTCAAAAAGTTTCTTACACGACG 58.447 37.500 0.00 0.00 0.00 5.12
2241 2345 4.959757 GTCAAAAAGTTTCTTACACGACGG 59.040 41.667 0.00 0.00 0.00 4.79
2242 2346 4.869297 TCAAAAAGTTTCTTACACGACGGA 59.131 37.500 0.00 0.00 0.00 4.69
2243 2347 4.783959 AAAAGTTTCTTACACGACGGAC 57.216 40.909 0.00 0.00 0.00 4.79
2244 2348 3.441496 AAGTTTCTTACACGACGGACA 57.559 42.857 0.00 0.00 0.00 4.02
2245 2349 3.441496 AGTTTCTTACACGACGGACAA 57.559 42.857 0.00 0.00 0.00 3.18
2246 2350 3.378339 AGTTTCTTACACGACGGACAAG 58.622 45.455 0.00 0.00 0.00 3.16
2247 2351 3.067180 AGTTTCTTACACGACGGACAAGA 59.933 43.478 0.00 1.55 0.00 3.02
2248 2352 3.928727 TTCTTACACGACGGACAAGAT 57.071 42.857 0.00 0.00 0.00 2.40
2249 2353 5.048504 AGTTTCTTACACGACGGACAAGATA 60.049 40.000 0.00 0.00 0.00 1.98
2250 2354 4.611310 TCTTACACGACGGACAAGATAG 57.389 45.455 0.00 0.00 0.00 2.08
2251 2355 4.005650 TCTTACACGACGGACAAGATAGT 58.994 43.478 0.00 0.00 0.00 2.12
2252 2356 5.178061 TCTTACACGACGGACAAGATAGTA 58.822 41.667 0.00 0.00 0.00 1.82
2253 2357 5.643348 TCTTACACGACGGACAAGATAGTAA 59.357 40.000 0.00 0.00 0.00 2.24
2254 2358 4.771590 ACACGACGGACAAGATAGTAAA 57.228 40.909 0.00 0.00 0.00 2.01
2255 2359 4.479619 ACACGACGGACAAGATAGTAAAC 58.520 43.478 0.00 0.00 0.00 2.01
2256 2360 4.022935 ACACGACGGACAAGATAGTAAACA 60.023 41.667 0.00 0.00 0.00 2.83
2257 2361 5.100259 CACGACGGACAAGATAGTAAACAT 58.900 41.667 0.00 0.00 0.00 2.71
2258 2362 6.127925 ACACGACGGACAAGATAGTAAACATA 60.128 38.462 0.00 0.00 0.00 2.29
2259 2363 6.748658 CACGACGGACAAGATAGTAAACATAA 59.251 38.462 0.00 0.00 0.00 1.90
2260 2364 6.971184 ACGACGGACAAGATAGTAAACATAAG 59.029 38.462 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.124351 CGCGCCCGTACAGAGGAA 62.124 66.667 0.00 0.00 0.00 3.36
19 20 3.456431 ATCCGCTCGCTCGTTCTCG 62.456 63.158 0.00 0.00 38.55 4.04
20 21 1.941734 CATCCGCTCGCTCGTTCTC 60.942 63.158 0.00 0.00 0.00 2.87
21 22 2.103143 CATCCGCTCGCTCGTTCT 59.897 61.111 0.00 0.00 0.00 3.01
22 23 1.941734 CTCATCCGCTCGCTCGTTC 60.942 63.158 0.00 0.00 0.00 3.95
23 24 2.103143 CTCATCCGCTCGCTCGTT 59.897 61.111 0.00 0.00 0.00 3.85
24 25 4.560856 GCTCATCCGCTCGCTCGT 62.561 66.667 0.00 0.00 0.00 4.18
25 26 4.559229 TGCTCATCCGCTCGCTCG 62.559 66.667 0.00 0.00 0.00 5.03
26 27 2.657944 CTGCTCATCCGCTCGCTC 60.658 66.667 0.00 0.00 0.00 5.03
27 28 4.887987 GCTGCTCATCCGCTCGCT 62.888 66.667 0.00 0.00 0.00 4.93
29 30 4.559229 TCGCTGCTCATCCGCTCG 62.559 66.667 0.00 0.00 0.00 5.03
30 31 2.657944 CTCGCTGCTCATCCGCTC 60.658 66.667 0.00 0.00 0.00 5.03
31 32 4.887987 GCTCGCTGCTCATCCGCT 62.888 66.667 0.00 0.00 38.95 5.52
33 34 3.469754 TACGCTCGCTGCTCATCCG 62.470 63.158 0.00 0.00 40.11 4.18
34 35 1.946650 GTACGCTCGCTGCTCATCC 60.947 63.158 0.00 0.00 40.11 3.51
35 36 1.946650 GGTACGCTCGCTGCTCATC 60.947 63.158 0.00 0.00 40.11 2.92
36 37 2.105128 GGTACGCTCGCTGCTCAT 59.895 61.111 0.00 0.00 40.11 2.90
37 38 3.062466 AGGTACGCTCGCTGCTCA 61.062 61.111 0.00 0.00 40.11 4.26
38 39 2.580867 CAGGTACGCTCGCTGCTC 60.581 66.667 0.00 0.00 40.11 4.26
39 40 3.057547 CTCAGGTACGCTCGCTGCT 62.058 63.158 0.00 0.00 40.11 4.24
40 41 2.580867 CTCAGGTACGCTCGCTGC 60.581 66.667 0.00 0.00 38.57 5.25
41 42 2.580867 GCTCAGGTACGCTCGCTG 60.581 66.667 0.00 0.00 0.00 5.18
42 43 3.827898 GGCTCAGGTACGCTCGCT 61.828 66.667 0.00 0.00 0.00 4.93
44 45 3.506096 TCGGCTCAGGTACGCTCG 61.506 66.667 0.00 0.00 0.00 5.03
45 46 2.102553 GTCGGCTCAGGTACGCTC 59.897 66.667 0.00 0.00 0.00 5.03
46 47 3.812019 CGTCGGCTCAGGTACGCT 61.812 66.667 0.00 0.00 0.00 5.07
47 48 3.807538 TCGTCGGCTCAGGTACGC 61.808 66.667 0.00 0.00 35.40 4.42
48 49 2.099831 GTCGTCGGCTCAGGTACG 59.900 66.667 0.00 0.00 36.71 3.67
49 50 2.099831 CGTCGTCGGCTCAGGTAC 59.900 66.667 0.00 0.00 0.00 3.34
50 51 2.046988 TCGTCGTCGGCTCAGGTA 60.047 61.111 1.55 0.00 37.69 3.08
51 52 3.432588 CTCGTCGTCGGCTCAGGT 61.433 66.667 1.55 0.00 37.69 4.00
52 53 4.838486 GCTCGTCGTCGGCTCAGG 62.838 72.222 1.55 0.00 37.69 3.86
53 54 4.103103 TGCTCGTCGTCGGCTCAG 62.103 66.667 13.99 1.68 37.69 3.35
54 55 4.103103 CTGCTCGTCGTCGGCTCA 62.103 66.667 13.99 4.96 37.69 4.26
74 75 2.272471 GTAGCAGGGGGAAGCACC 59.728 66.667 0.00 0.00 38.08 5.01
75 76 2.125106 CGTAGCAGGGGGAAGCAC 60.125 66.667 0.00 0.00 0.00 4.40
93 94 2.821366 GTGCACATGAGGCGGAGG 60.821 66.667 13.17 0.00 0.00 4.30
94 95 2.809861 AAGGTGCACATGAGGCGGAG 62.810 60.000 20.43 0.00 0.00 4.63
95 96 2.410322 AAAGGTGCACATGAGGCGGA 62.410 55.000 20.43 0.00 0.00 5.54
96 97 1.926511 GAAAGGTGCACATGAGGCGG 61.927 60.000 20.43 0.00 0.00 6.13
97 98 1.236616 TGAAAGGTGCACATGAGGCG 61.237 55.000 20.43 0.00 0.00 5.52
98 99 0.961019 TTGAAAGGTGCACATGAGGC 59.039 50.000 20.43 3.11 0.00 4.70
99 100 2.821378 TCATTGAAAGGTGCACATGAGG 59.179 45.455 20.43 1.07 0.00 3.86
100 101 3.668757 CGTCATTGAAAGGTGCACATGAG 60.669 47.826 20.43 8.06 0.00 2.90
101 102 2.226200 CGTCATTGAAAGGTGCACATGA 59.774 45.455 20.43 14.62 0.00 3.07
102 103 2.030893 ACGTCATTGAAAGGTGCACATG 60.031 45.455 20.43 12.43 0.00 3.21
103 104 2.229792 ACGTCATTGAAAGGTGCACAT 58.770 42.857 20.43 9.24 0.00 3.21
104 105 1.674359 ACGTCATTGAAAGGTGCACA 58.326 45.000 20.43 0.00 0.00 4.57
105 106 2.032799 TGAACGTCATTGAAAGGTGCAC 59.967 45.455 8.80 8.80 0.00 4.57
106 107 2.293170 TGAACGTCATTGAAAGGTGCA 58.707 42.857 0.00 0.00 0.00 4.57
107 108 3.042887 GTTGAACGTCATTGAAAGGTGC 58.957 45.455 0.00 0.00 0.00 5.01
108 109 3.288242 CGTTGAACGTCATTGAAAGGTG 58.712 45.455 9.94 0.00 36.74 4.00
109 110 2.289547 CCGTTGAACGTCATTGAAAGGT 59.710 45.455 17.05 0.00 40.58 3.50
110 111 2.916111 CCGTTGAACGTCATTGAAAGG 58.084 47.619 17.05 0.00 40.58 3.11
111 112 2.286713 TGCCGTTGAACGTCATTGAAAG 60.287 45.455 17.05 0.00 40.58 2.62
112 113 1.671328 TGCCGTTGAACGTCATTGAAA 59.329 42.857 17.05 0.00 40.58 2.69
113 114 1.262950 CTGCCGTTGAACGTCATTGAA 59.737 47.619 17.05 0.00 40.58 2.69
114 115 0.865111 CTGCCGTTGAACGTCATTGA 59.135 50.000 17.05 0.00 40.58 2.57
115 116 0.865111 TCTGCCGTTGAACGTCATTG 59.135 50.000 17.05 0.00 40.58 2.82
116 117 1.732259 GATCTGCCGTTGAACGTCATT 59.268 47.619 17.05 0.44 40.58 2.57
117 118 1.359848 GATCTGCCGTTGAACGTCAT 58.640 50.000 17.05 0.00 40.58 3.06
118 119 0.669318 GGATCTGCCGTTGAACGTCA 60.669 55.000 17.05 9.31 40.58 4.35
119 120 2.079049 GGATCTGCCGTTGAACGTC 58.921 57.895 17.05 4.05 40.58 4.34
120 121 4.278956 GGATCTGCCGTTGAACGT 57.721 55.556 17.05 0.00 40.58 3.99
139 140 1.766143 CGATTTGTAGGGCTCGCAGC 61.766 60.000 0.11 0.11 41.46 5.25
140 141 1.154205 CCGATTTGTAGGGCTCGCAG 61.154 60.000 0.00 0.00 0.00 5.18
141 142 1.153449 CCGATTTGTAGGGCTCGCA 60.153 57.895 0.00 0.00 0.00 5.10
142 143 1.887707 CCCGATTTGTAGGGCTCGC 60.888 63.158 0.00 0.00 41.34 5.03
143 144 4.438346 CCCGATTTGTAGGGCTCG 57.562 61.111 0.00 0.00 41.34 5.03
146 147 2.339275 CCCCTCCCGATTTGTAGGGC 62.339 65.000 0.00 0.00 46.34 5.19
148 149 0.759346 CTCCCCTCCCGATTTGTAGG 59.241 60.000 0.00 0.00 0.00 3.18
149 150 0.759346 CCTCCCCTCCCGATTTGTAG 59.241 60.000 0.00 0.00 0.00 2.74
150 151 0.693092 CCCTCCCCTCCCGATTTGTA 60.693 60.000 0.00 0.00 0.00 2.41
151 152 2.001269 CCCTCCCCTCCCGATTTGT 61.001 63.158 0.00 0.00 0.00 2.83
152 153 2.757124 CCCCTCCCCTCCCGATTTG 61.757 68.421 0.00 0.00 0.00 2.32
153 154 2.368329 CCCCTCCCCTCCCGATTT 60.368 66.667 0.00 0.00 0.00 2.17
154 155 3.373846 TCCCCTCCCCTCCCGATT 61.374 66.667 0.00 0.00 0.00 3.34
155 156 3.851184 CTCCCCTCCCCTCCCGAT 61.851 72.222 0.00 0.00 0.00 4.18
160 161 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
161 162 4.761304 TCTCCCCTCCCCTCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
162 163 4.179599 CTCTCCCCTCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
163 164 4.179599 CCTCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
164 165 4.179599 CCCTCTCCCCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
165 166 4.179599 CCCCTCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
166 167 4.761304 TCCCCTCTCCCCTCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
167 168 3.054557 ATTCCCCTCTCCCCTCCCC 62.055 68.421 0.00 0.00 0.00 4.81
168 169 1.772156 CATTCCCCTCTCCCCTCCC 60.772 68.421 0.00 0.00 0.00 4.30
169 170 0.327576 TTCATTCCCCTCTCCCCTCC 60.328 60.000 0.00 0.00 0.00 4.30
170 171 1.596496 TTTCATTCCCCTCTCCCCTC 58.404 55.000 0.00 0.00 0.00 4.30
171 172 1.855599 CATTTCATTCCCCTCTCCCCT 59.144 52.381 0.00 0.00 0.00 4.79
172 173 1.852965 TCATTTCATTCCCCTCTCCCC 59.147 52.381 0.00 0.00 0.00 4.81
173 174 2.158549 CCTCATTTCATTCCCCTCTCCC 60.159 54.545 0.00 0.00 0.00 4.30
174 175 2.511637 ACCTCATTTCATTCCCCTCTCC 59.488 50.000 0.00 0.00 0.00 3.71
175 176 3.200825 TCACCTCATTTCATTCCCCTCTC 59.799 47.826 0.00 0.00 0.00 3.20
176 177 3.192944 TCACCTCATTTCATTCCCCTCT 58.807 45.455 0.00 0.00 0.00 3.69
177 178 3.549794 CTCACCTCATTTCATTCCCCTC 58.450 50.000 0.00 0.00 0.00 4.30
178 179 2.357569 GCTCACCTCATTTCATTCCCCT 60.358 50.000 0.00 0.00 0.00 4.79
179 180 2.027385 GCTCACCTCATTTCATTCCCC 58.973 52.381 0.00 0.00 0.00 4.81
180 181 1.672881 CGCTCACCTCATTTCATTCCC 59.327 52.381 0.00 0.00 0.00 3.97
181 182 2.632377 TCGCTCACCTCATTTCATTCC 58.368 47.619 0.00 0.00 0.00 3.01
182 183 3.873361 TCATCGCTCACCTCATTTCATTC 59.127 43.478 0.00 0.00 0.00 2.67
183 184 3.624861 GTCATCGCTCACCTCATTTCATT 59.375 43.478 0.00 0.00 0.00 2.57
184 185 3.201290 GTCATCGCTCACCTCATTTCAT 58.799 45.455 0.00 0.00 0.00 2.57
185 186 2.621338 GTCATCGCTCACCTCATTTCA 58.379 47.619 0.00 0.00 0.00 2.69
186 187 1.590238 CGTCATCGCTCACCTCATTTC 59.410 52.381 0.00 0.00 0.00 2.17
187 188 1.645034 CGTCATCGCTCACCTCATTT 58.355 50.000 0.00 0.00 0.00 2.32
188 189 0.179100 CCGTCATCGCTCACCTCATT 60.179 55.000 0.00 0.00 35.54 2.57
189 190 1.439228 CCGTCATCGCTCACCTCAT 59.561 57.895 0.00 0.00 35.54 2.90
190 191 2.710902 CCCGTCATCGCTCACCTCA 61.711 63.158 0.00 0.00 35.54 3.86
191 192 2.105128 CCCGTCATCGCTCACCTC 59.895 66.667 0.00 0.00 35.54 3.85
192 193 2.680352 ACCCGTCATCGCTCACCT 60.680 61.111 0.00 0.00 35.54 4.00
193 194 2.509336 CACCCGTCATCGCTCACC 60.509 66.667 0.00 0.00 35.54 4.02
194 195 3.188786 GCACCCGTCATCGCTCAC 61.189 66.667 0.00 0.00 35.54 3.51
195 196 3.381983 AGCACCCGTCATCGCTCA 61.382 61.111 0.00 0.00 35.54 4.26
196 197 2.835701 TTCAGCACCCGTCATCGCTC 62.836 60.000 0.00 0.00 35.54 5.03
197 198 2.842394 CTTCAGCACCCGTCATCGCT 62.842 60.000 0.00 0.00 35.54 4.93
198 199 2.434185 TTCAGCACCCGTCATCGC 60.434 61.111 0.00 0.00 35.54 4.58
199 200 1.811266 CCTTCAGCACCCGTCATCG 60.811 63.158 0.00 0.00 0.00 3.84
200 201 1.450312 CCCTTCAGCACCCGTCATC 60.450 63.158 0.00 0.00 0.00 2.92
201 202 2.671070 CCCTTCAGCACCCGTCAT 59.329 61.111 0.00 0.00 0.00 3.06
202 203 3.636231 CCCCTTCAGCACCCGTCA 61.636 66.667 0.00 0.00 0.00 4.35
203 204 4.410400 CCCCCTTCAGCACCCGTC 62.410 72.222 0.00 0.00 0.00 4.79
217 218 1.477685 TTCGTGTCACTTCCTCCCCC 61.478 60.000 0.65 0.00 0.00 5.40
218 219 0.395312 TTTCGTGTCACTTCCTCCCC 59.605 55.000 0.65 0.00 0.00 4.81
219 220 2.474410 ATTTCGTGTCACTTCCTCCC 57.526 50.000 0.65 0.00 0.00 4.30
220 221 2.412089 CGAATTTCGTGTCACTTCCTCC 59.588 50.000 10.61 0.00 34.72 4.30
221 222 3.314553 TCGAATTTCGTGTCACTTCCTC 58.685 45.455 17.61 0.00 41.35 3.71
222 223 3.380479 TCGAATTTCGTGTCACTTCCT 57.620 42.857 17.61 0.00 41.35 3.36
223 224 4.209112 GTTTCGAATTTCGTGTCACTTCC 58.791 43.478 17.61 0.00 41.35 3.46
224 225 4.209112 GGTTTCGAATTTCGTGTCACTTC 58.791 43.478 17.61 0.00 41.35 3.01
225 226 3.302870 CGGTTTCGAATTTCGTGTCACTT 60.303 43.478 17.61 0.00 41.35 3.16
226 227 2.220133 CGGTTTCGAATTTCGTGTCACT 59.780 45.455 17.61 0.00 41.35 3.41
227 228 2.556806 CGGTTTCGAATTTCGTGTCAC 58.443 47.619 17.61 10.19 41.35 3.67
228 229 1.070443 GCGGTTTCGAATTTCGTGTCA 60.070 47.619 17.61 0.00 41.35 3.58
229 230 1.587991 GCGGTTTCGAATTTCGTGTC 58.412 50.000 17.61 9.25 41.35 3.67
230 231 0.236449 GGCGGTTTCGAATTTCGTGT 59.764 50.000 17.61 0.00 41.35 4.49
231 232 0.453782 GGGCGGTTTCGAATTTCGTG 60.454 55.000 17.61 6.16 41.35 4.35
232 233 0.885596 TGGGCGGTTTCGAATTTCGT 60.886 50.000 17.61 0.00 41.35 3.85
233 234 0.453782 GTGGGCGGTTTCGAATTTCG 60.454 55.000 12.54 12.54 42.10 3.46
234 235 0.109458 GGTGGGCGGTTTCGAATTTC 60.109 55.000 0.00 0.00 39.00 2.17
235 236 1.858372 CGGTGGGCGGTTTCGAATTT 61.858 55.000 0.00 0.00 39.00 1.82
236 237 2.329614 CGGTGGGCGGTTTCGAATT 61.330 57.895 0.00 0.00 39.00 2.17
237 238 2.744709 CGGTGGGCGGTTTCGAAT 60.745 61.111 0.00 0.00 39.00 3.34
248 249 3.988050 TAGTAGTGGGGGCGGTGGG 62.988 68.421 0.00 0.00 0.00 4.61
249 250 2.364579 TAGTAGTGGGGGCGGTGG 60.365 66.667 0.00 0.00 0.00 4.61
250 251 1.673808 GACTAGTAGTGGGGGCGGTG 61.674 65.000 7.76 0.00 0.00 4.94
251 252 1.380920 GACTAGTAGTGGGGGCGGT 60.381 63.158 7.76 0.00 0.00 5.68
252 253 0.184451 TAGACTAGTAGTGGGGGCGG 59.816 60.000 7.76 0.00 0.00 6.13
253 254 1.316651 GTAGACTAGTAGTGGGGGCG 58.683 60.000 7.76 0.00 0.00 6.13
254 255 1.316651 CGTAGACTAGTAGTGGGGGC 58.683 60.000 7.76 0.00 0.00 5.80
255 256 1.133853 AGCGTAGACTAGTAGTGGGGG 60.134 57.143 7.76 0.00 0.00 5.40
256 257 2.220313 GAGCGTAGACTAGTAGTGGGG 58.780 57.143 7.76 0.00 0.00 4.96
257 258 2.613133 GTGAGCGTAGACTAGTAGTGGG 59.387 54.545 7.76 0.00 0.00 4.61
258 259 3.533547 AGTGAGCGTAGACTAGTAGTGG 58.466 50.000 7.76 0.00 0.00 4.00
259 260 5.276301 CGTTAGTGAGCGTAGACTAGTAGTG 60.276 48.000 7.76 0.00 0.00 2.74
260 261 4.803088 CGTTAGTGAGCGTAGACTAGTAGT 59.197 45.833 1.37 1.37 0.00 2.73
261 262 4.208873 CCGTTAGTGAGCGTAGACTAGTAG 59.791 50.000 0.00 0.00 0.00 2.57
262 263 4.115516 CCGTTAGTGAGCGTAGACTAGTA 58.884 47.826 0.00 0.00 0.00 1.82
263 264 2.935201 CCGTTAGTGAGCGTAGACTAGT 59.065 50.000 0.00 0.00 0.00 2.57
264 265 2.287373 CCCGTTAGTGAGCGTAGACTAG 59.713 54.545 0.00 0.00 0.00 2.57
265 266 2.283298 CCCGTTAGTGAGCGTAGACTA 58.717 52.381 0.00 0.00 0.00 2.59
266 267 1.093159 CCCGTTAGTGAGCGTAGACT 58.907 55.000 0.00 0.00 0.00 3.24
267 268 0.525029 GCCCGTTAGTGAGCGTAGAC 60.525 60.000 0.00 0.00 0.00 2.59
268 269 0.961857 TGCCCGTTAGTGAGCGTAGA 60.962 55.000 0.00 0.00 0.00 2.59
269 270 0.102481 ATGCCCGTTAGTGAGCGTAG 59.898 55.000 0.00 0.00 0.00 3.51
270 271 1.066002 GTATGCCCGTTAGTGAGCGTA 59.934 52.381 0.00 0.00 0.00 4.42
271 272 0.179119 GTATGCCCGTTAGTGAGCGT 60.179 55.000 0.00 0.00 0.00 5.07
272 273 0.874607 GGTATGCCCGTTAGTGAGCG 60.875 60.000 0.00 0.00 0.00 5.03
273 274 0.464452 AGGTATGCCCGTTAGTGAGC 59.536 55.000 0.00 0.00 38.74 4.26
274 275 2.691526 TGTAGGTATGCCCGTTAGTGAG 59.308 50.000 0.00 0.00 38.74 3.51
275 276 2.428171 GTGTAGGTATGCCCGTTAGTGA 59.572 50.000 0.00 0.00 38.74 3.41
276 277 2.166870 TGTGTAGGTATGCCCGTTAGTG 59.833 50.000 0.00 0.00 38.74 2.74
277 278 2.429610 CTGTGTAGGTATGCCCGTTAGT 59.570 50.000 0.00 0.00 38.74 2.24
278 279 2.429610 ACTGTGTAGGTATGCCCGTTAG 59.570 50.000 0.00 0.00 38.74 2.34
279 280 2.428171 GACTGTGTAGGTATGCCCGTTA 59.572 50.000 0.00 0.00 38.74 3.18
280 281 1.206371 GACTGTGTAGGTATGCCCGTT 59.794 52.381 0.00 0.00 38.74 4.44
281 282 0.822164 GACTGTGTAGGTATGCCCGT 59.178 55.000 0.00 0.00 38.74 5.28
282 283 1.112113 AGACTGTGTAGGTATGCCCG 58.888 55.000 0.00 0.00 38.74 6.13
283 284 3.555168 GCATAGACTGTGTAGGTATGCCC 60.555 52.174 0.00 0.00 41.01 5.36
284 285 3.654414 GCATAGACTGTGTAGGTATGCC 58.346 50.000 0.87 0.00 41.01 4.40
285 286 3.069586 TGGCATAGACTGTGTAGGTATGC 59.930 47.826 12.08 12.08 43.41 3.14
286 287 4.937201 TGGCATAGACTGTGTAGGTATG 57.063 45.455 0.87 0.00 32.33 2.39
287 288 5.398236 AGATGGCATAGACTGTGTAGGTAT 58.602 41.667 0.00 0.00 0.00 2.73
288 289 4.804597 AGATGGCATAGACTGTGTAGGTA 58.195 43.478 0.00 0.00 0.00 3.08
289 290 3.639094 GAGATGGCATAGACTGTGTAGGT 59.361 47.826 0.00 0.00 0.00 3.08
290 291 3.638627 TGAGATGGCATAGACTGTGTAGG 59.361 47.826 0.00 0.00 0.00 3.18
291 292 4.261952 CCTGAGATGGCATAGACTGTGTAG 60.262 50.000 0.00 0.00 0.00 2.74
292 293 3.638627 CCTGAGATGGCATAGACTGTGTA 59.361 47.826 0.00 0.00 0.00 2.90
293 294 2.433604 CCTGAGATGGCATAGACTGTGT 59.566 50.000 0.00 0.00 0.00 3.72
294 295 3.109044 CCTGAGATGGCATAGACTGTG 57.891 52.381 0.00 0.00 0.00 3.66
305 306 4.181010 CCGGTGGGCCTGAGATGG 62.181 72.222 4.53 0.00 0.00 3.51
306 307 4.181010 CCCGGTGGGCCTGAGATG 62.181 72.222 4.53 0.00 35.35 2.90
346 347 4.778143 CACCTGGGCCGGTAGTGC 62.778 72.222 17.60 0.00 34.94 4.40
347 348 3.319198 ACACCTGGGCCGGTAGTG 61.319 66.667 17.60 17.39 34.94 2.74
348 349 3.319198 CACACCTGGGCCGGTAGT 61.319 66.667 17.60 14.82 34.94 2.73
349 350 4.778143 GCACACCTGGGCCGGTAG 62.778 72.222 17.60 14.34 38.87 3.18
357 358 2.124983 CATCTCCCGCACACCTGG 60.125 66.667 0.00 0.00 0.00 4.45
358 359 2.821366 GCATCTCCCGCACACCTG 60.821 66.667 0.00 0.00 0.00 4.00
359 360 4.457496 CGCATCTCCCGCACACCT 62.457 66.667 0.00 0.00 0.00 4.00
422 423 4.592192 ATCGGCTCCCATCGCACG 62.592 66.667 0.00 0.00 0.00 5.34
423 424 2.663188 GATCGGCTCCCATCGCAC 60.663 66.667 0.00 0.00 0.00 5.34
424 425 4.284860 CGATCGGCTCCCATCGCA 62.285 66.667 7.38 0.00 35.84 5.10
425 426 3.499929 TTCGATCGGCTCCCATCGC 62.500 63.158 16.41 0.00 41.41 4.58
426 427 1.661821 GTTCGATCGGCTCCCATCG 60.662 63.158 16.41 9.20 42.72 3.84
427 428 1.661821 CGTTCGATCGGCTCCCATC 60.662 63.158 16.41 0.00 0.00 3.51
428 429 2.417516 CGTTCGATCGGCTCCCAT 59.582 61.111 16.41 0.00 0.00 4.00
429 430 3.833645 CCGTTCGATCGGCTCCCA 61.834 66.667 21.00 0.00 43.96 4.37
436 437 0.640768 GCTCAAGAACCGTTCGATCG 59.359 55.000 9.36 9.36 34.02 3.69
437 438 0.640768 CGCTCAAGAACCGTTCGATC 59.359 55.000 5.62 0.00 34.02 3.69
438 439 0.736325 CCGCTCAAGAACCGTTCGAT 60.736 55.000 5.62 0.00 34.02 3.59
439 440 1.372499 CCGCTCAAGAACCGTTCGA 60.372 57.895 5.62 0.00 34.02 3.71
440 441 3.011760 GCCGCTCAAGAACCGTTCG 62.012 63.158 5.62 0.00 34.02 3.95
441 442 2.677979 GGCCGCTCAAGAACCGTTC 61.678 63.158 2.81 2.81 0.00 3.95
442 443 2.668550 GGCCGCTCAAGAACCGTT 60.669 61.111 0.00 0.00 0.00 4.44
462 463 2.727684 CGCTCGTGTCTCGTCTCGA 61.728 63.158 0.00 0.00 40.80 4.04
463 464 2.276120 CGCTCGTGTCTCGTCTCG 60.276 66.667 0.00 0.00 40.80 4.04
464 465 2.574736 GCGCTCGTGTCTCGTCTC 60.575 66.667 0.00 0.00 40.80 3.36
465 466 3.354645 TGCGCTCGTGTCTCGTCT 61.355 61.111 9.73 0.00 40.80 4.18
466 467 3.166630 GTGCGCTCGTGTCTCGTC 61.167 66.667 9.73 0.00 40.80 4.20
499 500 9.896263 AAAGCGAAAGTAAATATAAAACGGAAA 57.104 25.926 0.00 0.00 0.00 3.13
500 501 9.332301 CAAAGCGAAAGTAAATATAAAACGGAA 57.668 29.630 0.00 0.00 0.00 4.30
501 502 8.505625 ACAAAGCGAAAGTAAATATAAAACGGA 58.494 29.630 0.00 0.00 0.00 4.69
502 503 8.663771 ACAAAGCGAAAGTAAATATAAAACGG 57.336 30.769 0.00 0.00 0.00 4.44
506 507 9.763465 GCACTACAAAGCGAAAGTAAATATAAA 57.237 29.630 0.00 0.00 0.00 1.40
507 508 9.158233 AGCACTACAAAGCGAAAGTAAATATAA 57.842 29.630 0.00 0.00 35.48 0.98
508 509 8.712285 AGCACTACAAAGCGAAAGTAAATATA 57.288 30.769 0.00 0.00 35.48 0.86
509 510 7.611213 AGCACTACAAAGCGAAAGTAAATAT 57.389 32.000 0.00 0.00 35.48 1.28
510 511 8.712285 ATAGCACTACAAAGCGAAAGTAAATA 57.288 30.769 0.00 0.00 35.48 1.40
511 512 5.941948 AGCACTACAAAGCGAAAGTAAAT 57.058 34.783 0.00 0.00 35.48 1.40
512 513 6.183360 CGATAGCACTACAAAGCGAAAGTAAA 60.183 38.462 0.00 0.00 35.48 2.01
513 514 5.287752 CGATAGCACTACAAAGCGAAAGTAA 59.712 40.000 0.00 0.00 35.48 2.24
514 515 4.796830 CGATAGCACTACAAAGCGAAAGTA 59.203 41.667 0.00 0.00 35.48 2.24
515 516 3.612860 CGATAGCACTACAAAGCGAAAGT 59.387 43.478 0.00 0.00 35.48 2.66
516 517 3.857665 TCGATAGCACTACAAAGCGAAAG 59.142 43.478 0.00 0.00 35.48 2.62
517 518 3.840468 TCGATAGCACTACAAAGCGAAA 58.160 40.909 0.00 0.00 35.48 3.46
518 519 3.497297 TCGATAGCACTACAAAGCGAA 57.503 42.857 0.00 0.00 35.48 4.70
519 520 3.119602 AGTTCGATAGCACTACAAAGCGA 60.120 43.478 0.00 0.00 41.97 4.93
520 521 3.179830 AGTTCGATAGCACTACAAAGCG 58.820 45.455 0.00 0.00 41.97 4.68
528 529 1.681793 ACCGCATAGTTCGATAGCACT 59.318 47.619 0.00 0.00 46.55 4.40
529 530 2.135664 ACCGCATAGTTCGATAGCAC 57.864 50.000 0.00 0.00 0.00 4.40
530 531 2.882927 AACCGCATAGTTCGATAGCA 57.117 45.000 0.00 0.00 0.00 3.49
531 532 2.153247 CGAAACCGCATAGTTCGATAGC 59.847 50.000 0.00 0.00 0.00 2.97
586 587 2.570415 TTCTTGGATGGCCGTTTGTA 57.430 45.000 0.00 0.00 36.79 2.41
648 682 4.142752 CCAACTCATGTGATGTGATGTGTC 60.143 45.833 0.94 0.00 0.00 3.67
673 712 1.134907 CAAAAATAGCAGGCCTGGCTG 60.135 52.381 33.46 15.71 42.62 4.85
687 730 4.157105 GTGGCCGGTTGACTATACAAAAAT 59.843 41.667 1.90 0.00 0.00 1.82
693 736 0.179065 GGGTGGCCGGTTGACTATAC 60.179 60.000 1.90 0.00 0.00 1.47
717 760 2.305009 GGATGATTGAGGCTTTGAGGG 58.695 52.381 0.00 0.00 0.00 4.30
718 761 2.305009 GGGATGATTGAGGCTTTGAGG 58.695 52.381 0.00 0.00 0.00 3.86
719 762 2.305009 GGGGATGATTGAGGCTTTGAG 58.695 52.381 0.00 0.00 0.00 3.02
720 763 1.063717 GGGGGATGATTGAGGCTTTGA 60.064 52.381 0.00 0.00 0.00 2.69
721 764 1.063417 AGGGGGATGATTGAGGCTTTG 60.063 52.381 0.00 0.00 0.00 2.77
722 765 1.216427 GAGGGGGATGATTGAGGCTTT 59.784 52.381 0.00 0.00 0.00 3.51
737 784 3.081409 CCGTGTGTAGGGGAGGGG 61.081 72.222 0.00 0.00 0.00 4.79
766 813 2.744709 ACCGTTTCCCAATCCGCG 60.745 61.111 0.00 0.00 0.00 6.46
982 1047 1.833630 CATGCTAAGGACAGAGGTGGA 59.166 52.381 0.00 0.00 0.00 4.02
986 1051 1.833630 TCACCATGCTAAGGACAGAGG 59.166 52.381 0.00 0.00 0.00 3.69
992 1057 1.204146 GTCCCTCACCATGCTAAGGA 58.796 55.000 6.97 0.00 0.00 3.36
1032 1097 4.400961 AGGAGAAGCACCGCCAGC 62.401 66.667 1.52 0.00 0.00 4.85
1038 1103 1.216710 CAGGACGAGGAGAAGCACC 59.783 63.158 0.00 0.00 0.00 5.01
1051 1116 4.500116 GAGCTCGGACGCCAGGAC 62.500 72.222 0.00 0.00 0.00 3.85
1321 1395 0.517755 ACACACTACTCAGTCGCTCG 59.482 55.000 0.00 0.00 30.46 5.03
1338 1414 4.749598 GCATATGTGATTGTATCGTCCACA 59.250 41.667 4.29 0.00 41.24 4.17
1340 1416 4.954875 TGCATATGTGATTGTATCGTCCA 58.045 39.130 4.29 0.00 0.00 4.02
1341 1417 4.991056 ACTGCATATGTGATTGTATCGTCC 59.009 41.667 4.29 0.00 0.00 4.79
1342 1418 5.691754 TCACTGCATATGTGATTGTATCGTC 59.308 40.000 4.29 0.00 39.23 4.20
1449 1525 6.656693 GTGAAAATCATGGAGGAAGAAGAAGA 59.343 38.462 0.00 0.00 0.00 2.87
1450 1526 6.658391 AGTGAAAATCATGGAGGAAGAAGAAG 59.342 38.462 0.00 0.00 0.00 2.85
1451 1527 6.546484 AGTGAAAATCATGGAGGAAGAAGAA 58.454 36.000 0.00 0.00 0.00 2.52
1523 1602 4.736759 GCAAGCTCCCAATCAATCAATCAG 60.737 45.833 0.00 0.00 0.00 2.90
1524 1603 3.131577 GCAAGCTCCCAATCAATCAATCA 59.868 43.478 0.00 0.00 0.00 2.57
1525 1604 3.383825 AGCAAGCTCCCAATCAATCAATC 59.616 43.478 0.00 0.00 0.00 2.67
1526 1605 3.132289 CAGCAAGCTCCCAATCAATCAAT 59.868 43.478 0.00 0.00 0.00 2.57
1607 1696 0.255033 AATGACCCTAAACGCCCTCC 59.745 55.000 0.00 0.00 0.00 4.30
1642 1731 3.726517 CCTTGTCCGCTTGCCACG 61.727 66.667 0.00 0.00 0.00 4.94
1795 1886 9.503399 CTACCAACAGTTTTTAATCTCCTACTT 57.497 33.333 0.00 0.00 0.00 2.24
1796 1887 8.101419 CCTACCAACAGTTTTTAATCTCCTACT 58.899 37.037 0.00 0.00 0.00 2.57
1817 1915 4.379652 TCAAAAGACCAACGTAACCTACC 58.620 43.478 0.00 0.00 0.00 3.18
1865 1963 2.582436 CCGGACTACACGGCCAAT 59.418 61.111 2.24 0.00 45.34 3.16
1879 1977 0.821711 TTGTTTGACCTTCCAGCCGG 60.822 55.000 0.00 0.00 0.00 6.13
1995 2093 0.469494 AGCACCGTGATGGCATGATA 59.531 50.000 3.81 0.00 43.94 2.15
2105 2209 3.591196 TTTGCGGGGATTGAATCTTTG 57.409 42.857 5.03 0.00 0.00 2.77
2106 2210 3.831911 TCTTTTGCGGGGATTGAATCTTT 59.168 39.130 5.03 0.00 0.00 2.52
2107 2211 3.430453 TCTTTTGCGGGGATTGAATCTT 58.570 40.909 5.03 0.00 0.00 2.40
2108 2212 3.085952 TCTTTTGCGGGGATTGAATCT 57.914 42.857 5.03 0.00 0.00 2.40
2109 2213 3.866883 TTCTTTTGCGGGGATTGAATC 57.133 42.857 0.00 0.00 0.00 2.52
2110 2214 3.323403 TGTTTCTTTTGCGGGGATTGAAT 59.677 39.130 0.00 0.00 0.00 2.57
2111 2215 2.695666 TGTTTCTTTTGCGGGGATTGAA 59.304 40.909 0.00 0.00 0.00 2.69
2112 2216 2.311463 TGTTTCTTTTGCGGGGATTGA 58.689 42.857 0.00 0.00 0.00 2.57
2113 2217 2.810439 TGTTTCTTTTGCGGGGATTG 57.190 45.000 0.00 0.00 0.00 2.67
2114 2218 3.119637 CGTATGTTTCTTTTGCGGGGATT 60.120 43.478 0.00 0.00 0.00 3.01
2115 2219 2.422127 CGTATGTTTCTTTTGCGGGGAT 59.578 45.455 0.00 0.00 0.00 3.85
2116 2220 1.807742 CGTATGTTTCTTTTGCGGGGA 59.192 47.619 0.00 0.00 0.00 4.81
2117 2221 1.807742 TCGTATGTTTCTTTTGCGGGG 59.192 47.619 0.00 0.00 0.00 5.73
2118 2222 3.187637 TCTTCGTATGTTTCTTTTGCGGG 59.812 43.478 0.00 0.00 0.00 6.13
2119 2223 4.398549 TCTTCGTATGTTTCTTTTGCGG 57.601 40.909 0.00 0.00 0.00 5.69
2120 2224 6.077197 TGAATCTTCGTATGTTTCTTTTGCG 58.923 36.000 0.00 0.00 0.00 4.85
2121 2225 7.298122 TCTGAATCTTCGTATGTTTCTTTTGC 58.702 34.615 0.00 0.00 0.00 3.68
2122 2226 7.959651 CCTCTGAATCTTCGTATGTTTCTTTTG 59.040 37.037 0.00 0.00 0.00 2.44
2123 2227 7.878127 TCCTCTGAATCTTCGTATGTTTCTTTT 59.122 33.333 0.00 0.00 0.00 2.27
2124 2228 7.332182 GTCCTCTGAATCTTCGTATGTTTCTTT 59.668 37.037 0.00 0.00 0.00 2.52
2125 2229 6.814146 GTCCTCTGAATCTTCGTATGTTTCTT 59.186 38.462 0.00 0.00 0.00 2.52
2126 2230 6.334202 GTCCTCTGAATCTTCGTATGTTTCT 58.666 40.000 0.00 0.00 0.00 2.52
2127 2231 5.230306 CGTCCTCTGAATCTTCGTATGTTTC 59.770 44.000 0.00 0.00 0.00 2.78
2128 2232 5.103000 CGTCCTCTGAATCTTCGTATGTTT 58.897 41.667 0.00 0.00 0.00 2.83
2129 2233 4.398358 TCGTCCTCTGAATCTTCGTATGTT 59.602 41.667 0.00 0.00 0.00 2.71
2130 2234 3.945921 TCGTCCTCTGAATCTTCGTATGT 59.054 43.478 0.00 0.00 0.00 2.29
2131 2235 4.553756 TCGTCCTCTGAATCTTCGTATG 57.446 45.455 0.00 0.00 0.00 2.39
2132 2236 6.879276 TTATCGTCCTCTGAATCTTCGTAT 57.121 37.500 0.00 0.00 0.00 3.06
2133 2237 6.688637 TTTATCGTCCTCTGAATCTTCGTA 57.311 37.500 0.00 0.00 0.00 3.43
2134 2238 5.578005 TTTATCGTCCTCTGAATCTTCGT 57.422 39.130 0.00 0.00 0.00 3.85
2135 2239 6.887376 TTTTTATCGTCCTCTGAATCTTCG 57.113 37.500 0.00 0.00 0.00 3.79
2156 2260 6.993902 ACATGCATGACTTGATTTTCCTTTTT 59.006 30.769 32.75 0.57 0.00 1.94
2157 2261 6.527423 ACATGCATGACTTGATTTTCCTTTT 58.473 32.000 32.75 0.95 0.00 2.27
2158 2262 6.105397 ACATGCATGACTTGATTTTCCTTT 57.895 33.333 32.75 1.36 0.00 3.11
2159 2263 5.733620 ACATGCATGACTTGATTTTCCTT 57.266 34.783 32.75 2.07 0.00 3.36
2160 2264 5.733620 AACATGCATGACTTGATTTTCCT 57.266 34.783 32.75 2.54 0.00 3.36
2161 2265 7.760794 TGATAAACATGCATGACTTGATTTTCC 59.239 33.333 32.75 14.90 0.00 3.13
2162 2266 8.692110 TGATAAACATGCATGACTTGATTTTC 57.308 30.769 32.75 18.15 0.00 2.29
2178 2282 5.025453 AGGTTTTCAGCCCATGATAAACAT 58.975 37.500 0.00 0.00 38.58 2.71
2179 2283 4.220382 CAGGTTTTCAGCCCATGATAAACA 59.780 41.667 0.00 0.00 38.58 2.83
2180 2284 4.220602 ACAGGTTTTCAGCCCATGATAAAC 59.779 41.667 0.00 0.00 36.96 2.01
2181 2285 4.415596 ACAGGTTTTCAGCCCATGATAAA 58.584 39.130 0.00 0.00 37.89 1.40
2182 2286 4.046286 ACAGGTTTTCAGCCCATGATAA 57.954 40.909 0.00 0.00 37.89 1.75
2183 2287 3.737559 ACAGGTTTTCAGCCCATGATA 57.262 42.857 0.00 0.00 37.89 2.15
2184 2288 2.610438 ACAGGTTTTCAGCCCATGAT 57.390 45.000 0.00 0.00 37.89 2.45
2185 2289 2.380064 AACAGGTTTTCAGCCCATGA 57.620 45.000 0.00 0.00 35.62 3.07
2186 2290 3.763360 TGATAACAGGTTTTCAGCCCATG 59.237 43.478 1.88 0.00 0.00 3.66
2187 2291 3.763897 GTGATAACAGGTTTTCAGCCCAT 59.236 43.478 5.70 0.00 32.65 4.00
2188 2292 3.153919 GTGATAACAGGTTTTCAGCCCA 58.846 45.455 5.70 0.00 32.65 5.36
2189 2293 3.153919 TGTGATAACAGGTTTTCAGCCC 58.846 45.455 5.70 0.00 32.65 5.19
2190 2294 6.509418 TTATGTGATAACAGGTTTTCAGCC 57.491 37.500 5.70 0.00 32.65 4.85
2191 2295 7.367285 TGTTTATGTGATAACAGGTTTTCAGC 58.633 34.615 5.70 3.22 32.65 4.26
2192 2296 9.345517 CATGTTTATGTGATAACAGGTTTTCAG 57.654 33.333 5.70 0.00 32.65 3.02
2193 2297 8.855110 ACATGTTTATGTGATAACAGGTTTTCA 58.145 29.630 0.00 1.88 45.54 2.69
2211 2315 9.279904 CGTGTAAGAAACTTTTTGACATGTTTA 57.720 29.630 0.00 0.00 33.49 2.01
2212 2316 8.024285 TCGTGTAAGAAACTTTTTGACATGTTT 58.976 29.630 0.00 0.00 35.64 2.83
2213 2317 7.483691 GTCGTGTAAGAAACTTTTTGACATGTT 59.516 33.333 0.00 0.00 0.00 2.71
2214 2318 6.964934 GTCGTGTAAGAAACTTTTTGACATGT 59.035 34.615 0.00 0.00 0.00 3.21
2215 2319 6.138546 CGTCGTGTAAGAAACTTTTTGACATG 59.861 38.462 0.00 0.00 0.00 3.21
2216 2320 6.189567 CGTCGTGTAAGAAACTTTTTGACAT 58.810 36.000 0.00 0.00 0.00 3.06
2217 2321 5.446206 CCGTCGTGTAAGAAACTTTTTGACA 60.446 40.000 0.00 0.00 0.00 3.58
2218 2322 4.959757 CCGTCGTGTAAGAAACTTTTTGAC 59.040 41.667 0.00 0.00 0.00 3.18
2219 2323 4.869297 TCCGTCGTGTAAGAAACTTTTTGA 59.131 37.500 0.00 0.00 0.00 2.69
2220 2324 4.959757 GTCCGTCGTGTAAGAAACTTTTTG 59.040 41.667 0.00 0.00 0.00 2.44
2221 2325 4.630940 TGTCCGTCGTGTAAGAAACTTTTT 59.369 37.500 0.00 0.00 0.00 1.94
2222 2326 4.183101 TGTCCGTCGTGTAAGAAACTTTT 58.817 39.130 0.00 0.00 0.00 2.27
2223 2327 3.784338 TGTCCGTCGTGTAAGAAACTTT 58.216 40.909 0.00 0.00 0.00 2.66
2224 2328 3.441496 TGTCCGTCGTGTAAGAAACTT 57.559 42.857 0.00 0.00 0.00 2.66
2225 2329 3.067180 TCTTGTCCGTCGTGTAAGAAACT 59.933 43.478 0.00 0.00 0.00 2.66
2226 2330 3.374745 TCTTGTCCGTCGTGTAAGAAAC 58.625 45.455 0.00 0.00 0.00 2.78
2227 2331 3.713858 TCTTGTCCGTCGTGTAAGAAA 57.286 42.857 0.00 0.00 0.00 2.52
2228 2332 3.928727 ATCTTGTCCGTCGTGTAAGAA 57.071 42.857 6.45 0.00 31.89 2.52
2229 2333 4.005650 ACTATCTTGTCCGTCGTGTAAGA 58.994 43.478 5.24 5.24 32.57 2.10
2230 2334 4.352600 ACTATCTTGTCCGTCGTGTAAG 57.647 45.455 0.00 0.00 0.00 2.34
2231 2335 5.878332 TTACTATCTTGTCCGTCGTGTAA 57.122 39.130 0.00 0.00 0.00 2.41
2232 2336 5.181056 TGTTTACTATCTTGTCCGTCGTGTA 59.819 40.000 0.00 0.00 0.00 2.90
2233 2337 4.022935 TGTTTACTATCTTGTCCGTCGTGT 60.023 41.667 0.00 0.00 0.00 4.49
2234 2338 4.478699 TGTTTACTATCTTGTCCGTCGTG 58.521 43.478 0.00 0.00 0.00 4.35
2235 2339 4.771590 TGTTTACTATCTTGTCCGTCGT 57.228 40.909 0.00 0.00 0.00 4.34
2236 2340 7.377832 CTTATGTTTACTATCTTGTCCGTCG 57.622 40.000 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.