Multiple sequence alignment - TraesCS2A01G369200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G369200 chr2A 100.000 2461 0 0 1 2461 612277754 612275294 0.000000e+00 4545
1 TraesCS2A01G369200 chr2A 84.615 117 17 1 18 134 612097863 612097978 5.560000e-22 115
2 TraesCS2A01G369200 chr2D 88.218 1010 44 26 273 1255 470436416 470435455 0.000000e+00 1136
3 TraesCS2A01G369200 chr2D 92.806 556 26 6 1914 2461 470433657 470433108 0.000000e+00 793
4 TraesCS2A01G369200 chr2D 92.986 499 30 1 1968 2461 470526289 470526787 0.000000e+00 723
5 TraesCS2A01G369200 chr2D 94.954 218 11 0 1265 1482 470435395 470435178 2.340000e-90 342
6 TraesCS2A01G369200 chr2D 88.652 282 24 3 1 275 470438596 470438316 1.090000e-88 337
7 TraesCS2A01G369200 chr2B 91.523 814 42 10 449 1255 549388137 549387344 0.000000e+00 1096
8 TraesCS2A01G369200 chr2B 91.515 660 30 10 1265 1906 549387284 549386633 0.000000e+00 885
9 TraesCS2A01G369200 chr2B 94.200 569 20 5 1905 2461 549386569 549386002 0.000000e+00 856
10 TraesCS2A01G369200 chr2B 91.135 564 38 3 1905 2461 549508580 549509138 0.000000e+00 754
11 TraesCS2A01G369200 chr2B 90.278 216 21 0 245 460 549388367 549388152 1.440000e-72 283
12 TraesCS2A01G369200 chr2B 88.038 209 23 1 39 247 549502096 549501890 1.890000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G369200 chr2A 612275294 612277754 2460 True 4545 4545 100.0000 1 2461 1 chr2A.!!$R1 2460
1 TraesCS2A01G369200 chr2D 470433108 470438596 5488 True 652 1136 91.1575 1 2461 4 chr2D.!!$R1 2460
2 TraesCS2A01G369200 chr2B 549386002 549388367 2365 True 780 1096 91.8790 245 2461 4 chr2B.!!$R2 2216
3 TraesCS2A01G369200 chr2B 549508580 549509138 558 False 754 754 91.1350 1905 2461 1 chr2B.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.034059 GAGCATAGGTGGACCATCGG 59.966 60.0 0.0 0.0 38.89 4.18 F
481 2435 0.037232 GGAGAGGGACGTTCAACCAG 60.037 60.0 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1044 3003 1.500474 TGGCGAGGGAGATTTGATCT 58.500 50.0 0.0 0.0 43.7 2.75 R
2081 5278 0.032678 CCTATAGCCTGTGTGAGCGG 59.967 60.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.034059 GAGCATAGGTGGACCATCGG 59.966 60.000 0.00 0.00 38.89 4.18
67 70 3.870419 GGATTGTGAGAGAGAGCAATGTC 59.130 47.826 0.00 0.00 32.47 3.06
71 74 4.251268 TGTGAGAGAGAGCAATGTCAATG 58.749 43.478 0.00 0.00 0.00 2.82
73 76 3.262660 TGAGAGAGAGCAATGTCAATGGT 59.737 43.478 0.00 0.00 0.00 3.55
85 88 0.179004 TCAATGGTGGTTTGAGCGGT 60.179 50.000 0.00 0.00 0.00 5.68
143 151 1.741032 GTCTCGTCTCGTCTCCCGT 60.741 63.158 0.00 0.00 37.94 5.28
145 153 3.384014 CTCGTCTCGTCTCCCGTGC 62.384 68.421 0.00 0.00 37.94 5.34
150 158 0.894184 TCTCGTCTCCCGTGCTTCTT 60.894 55.000 0.00 0.00 37.94 2.52
151 159 0.456995 CTCGTCTCCCGTGCTTCTTC 60.457 60.000 0.00 0.00 37.94 2.87
156 164 3.121030 CCCGTGCTTCTTCAGGCG 61.121 66.667 0.00 0.00 0.00 5.52
166 174 3.300667 CTTCAGGCGTGCAAGCGAC 62.301 63.158 18.40 6.49 40.82 5.19
167 175 4.600576 TCAGGCGTGCAAGCGACA 62.601 61.111 18.40 1.23 43.41 4.35
239 247 1.126846 GTCGCTGAGGTTCACGAATTG 59.873 52.381 0.00 0.00 33.98 2.32
275 283 4.759693 ACATCCGAACAGAGCAAAATTACA 59.240 37.500 0.00 0.00 0.00 2.41
325 2235 3.825014 GGGCTACCTCTATACATCGTTGA 59.175 47.826 0.00 0.00 0.00 3.18
401 2329 3.353029 CCACGGCGCACATGACAA 61.353 61.111 10.83 0.00 0.00 3.18
443 2371 4.133820 CCAAACTATCCTTCACACACACA 58.866 43.478 0.00 0.00 0.00 3.72
445 2373 4.415881 AACTATCCTTCACACACACACA 57.584 40.909 0.00 0.00 0.00 3.72
447 2375 2.708216 ATCCTTCACACACACACACA 57.292 45.000 0.00 0.00 0.00 3.72
481 2435 0.037232 GGAGAGGGACGTTCAACCAG 60.037 60.000 0.00 0.00 0.00 4.00
514 2468 1.393539 CTCCACCGACTTTTATGCGTG 59.606 52.381 0.00 0.00 0.00 5.34
574 2528 0.108138 ACAAGCCGCAGAGGATACAC 60.108 55.000 0.00 0.00 45.00 2.90
579 2533 0.527817 CCGCAGAGGATACACGAACC 60.528 60.000 0.00 0.00 45.00 3.62
584 2538 0.527817 GAGGATACACGAACCAGGCG 60.528 60.000 0.00 0.00 41.41 5.52
623 2577 1.878953 CAGGTAAACAACTGCCGAGT 58.121 50.000 0.00 0.00 0.00 4.18
647 2601 2.351738 CCCGGCAATCTTTTGACAAGAC 60.352 50.000 0.00 0.00 41.28 3.01
710 2664 1.250840 GGTGCCGGCATTCTCCTTTT 61.251 55.000 35.23 0.00 0.00 2.27
776 2730 7.316640 AGTAGTACTTTGTTAGCTGATCACTG 58.683 38.462 0.00 0.00 0.00 3.66
778 2732 7.228314 AGTACTTTGTTAGCTGATCACTGTA 57.772 36.000 0.00 0.00 0.00 2.74
780 2734 8.314751 AGTACTTTGTTAGCTGATCACTGTATT 58.685 33.333 0.00 0.00 0.00 1.89
815 2770 1.813513 CACACAAGCTGGTCTTAGGG 58.186 55.000 0.00 0.00 32.74 3.53
816 2771 1.072331 CACACAAGCTGGTCTTAGGGT 59.928 52.381 0.00 0.00 32.74 4.34
817 2772 1.348036 ACACAAGCTGGTCTTAGGGTC 59.652 52.381 0.00 0.00 32.74 4.46
818 2773 0.984995 ACAAGCTGGTCTTAGGGTCC 59.015 55.000 0.00 0.00 32.74 4.46
819 2774 0.984230 CAAGCTGGTCTTAGGGTCCA 59.016 55.000 0.00 0.00 32.74 4.02
850 2805 1.731720 AGCGGCATCAGAAGAAGAAC 58.268 50.000 1.45 0.00 0.00 3.01
851 2806 1.002430 AGCGGCATCAGAAGAAGAACA 59.998 47.619 1.45 0.00 0.00 3.18
852 2807 1.806542 GCGGCATCAGAAGAAGAACAA 59.193 47.619 0.00 0.00 0.00 2.83
922 2878 0.680280 CCAGCTTGGCTCATTCTGCT 60.680 55.000 0.00 0.00 36.40 4.24
1024 2983 3.813596 CGCAGGTATGGTTCCAGC 58.186 61.111 0.00 0.00 34.78 4.85
1025 2984 1.819632 CGCAGGTATGGTTCCAGCC 60.820 63.158 0.00 2.83 34.67 4.85
1040 2999 1.614903 CCAGCCAGTGAATTTCTTGCA 59.385 47.619 0.00 0.00 0.00 4.08
1044 3003 2.610976 GCCAGTGAATTTCTTGCATGCA 60.611 45.455 18.46 18.46 0.00 3.96
1111 3070 7.012327 TCTCTAATAATTGATGGGTTCTTTGCG 59.988 37.037 0.00 0.00 0.00 4.85
1129 3088 1.529244 GTGGCAGCAGAAGGTGGTT 60.529 57.895 0.00 0.00 43.34 3.67
1189 3148 2.126502 GCCATGGAAACCGTTGCG 60.127 61.111 18.40 0.00 0.00 4.85
1287 3302 6.857437 TCCTGACTTGACTATGATCTGAAA 57.143 37.500 0.00 0.00 0.00 2.69
1301 3316 5.281727 TGATCTGAAACAGGTATCGATTCG 58.718 41.667 1.71 0.00 31.51 3.34
1377 3392 0.737367 CGTGATCGCCAAGAAGCTGA 60.737 55.000 0.00 0.00 0.00 4.26
1424 3439 3.431725 GTTGGGCCGGCGAAAGAG 61.432 66.667 22.54 0.00 0.00 2.85
1463 3478 3.196685 AGAAAGGGGAGAAGAAGTGATCG 59.803 47.826 0.00 0.00 0.00 3.69
1493 3520 5.817816 GGTGTTTCTGTTCCATCGATATCTT 59.182 40.000 0.00 0.00 0.00 2.40
1499 3526 6.878317 TCTGTTCCATCGATATCTTTCTTGT 58.122 36.000 0.00 0.00 0.00 3.16
1531 3558 4.806330 TGAGGACGAACATACTGAGTTTC 58.194 43.478 0.00 0.00 0.00 2.78
1550 3577 4.568152 TTCTTGGCTTTTTGCTCTGTAC 57.432 40.909 0.00 0.00 42.39 2.90
1593 3621 7.653767 GGTACCTGCAGATGTATTTACATAC 57.346 40.000 17.39 0.00 46.20 2.39
1662 3690 6.649973 CCTGCATAATTGTTCACCAAAAATGA 59.350 34.615 0.00 0.00 36.44 2.57
1715 3764 7.472663 TGAAAATATCAGGGTTTCCAACTTTGG 60.473 37.037 1.13 1.13 40.51 3.28
1753 3803 7.819900 GGCTCAGTTTCTCTTCAAGATAAAGTA 59.180 37.037 5.52 0.00 32.82 2.24
1771 3821 6.619801 AAAGTACTCACAAAGTGCCTAAAG 57.380 37.500 0.00 0.00 41.17 1.85
1789 3839 3.316071 AAGTGCAGAGACAGAGACATG 57.684 47.619 0.00 0.00 0.00 3.21
1807 3857 6.638610 AGACATGGATTTCTGAACAGAGTAG 58.361 40.000 0.00 0.00 38.88 2.57
1832 3882 6.399639 AAATCACCACCGAATTACAAACTT 57.600 33.333 0.00 0.00 0.00 2.66
1833 3883 7.308710 GGAAATCACCACCGAATTACAAACTTA 60.309 37.037 0.00 0.00 0.00 2.24
1834 3884 7.696992 AATCACCACCGAATTACAAACTTAT 57.303 32.000 0.00 0.00 0.00 1.73
1835 3885 8.795842 AATCACCACCGAATTACAAACTTATA 57.204 30.769 0.00 0.00 0.00 0.98
1836 3886 8.974060 ATCACCACCGAATTACAAACTTATAT 57.026 30.769 0.00 0.00 0.00 0.86
1962 5147 4.571919 AGTAAATCGAAACCGTCCATCAA 58.428 39.130 0.00 0.00 0.00 2.57
1963 5148 3.824414 AAATCGAAACCGTCCATCAAC 57.176 42.857 0.00 0.00 0.00 3.18
2008 5193 2.280592 ACGTGGCCGAGGAACAAC 60.281 61.111 0.00 0.00 37.88 3.32
2013 5198 1.122632 TGGCCGAGGAACAACACCTA 61.123 55.000 0.00 0.00 37.93 3.08
2066 5257 1.741770 GTCCGCCACGAAGCTCATT 60.742 57.895 0.00 0.00 0.00 2.57
2159 5356 2.885861 CCTTCCTCGTCCACCTCG 59.114 66.667 0.00 0.00 0.00 4.63
2179 5376 2.587194 GGCGCACATCTGCTCGAT 60.587 61.111 10.83 0.00 41.77 3.59
2324 5521 2.553247 GGAGAACTTGAACTTGGGGAGG 60.553 54.545 0.00 0.00 0.00 4.30
2330 5527 1.301293 GAACTTGGGGAGGAGGCAG 59.699 63.158 0.00 0.00 0.00 4.85
2440 5637 2.108362 CCGGTGCGGGAGGAATAC 59.892 66.667 0.00 0.00 44.15 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.435693 GGTCCACCTATGCTCCGCT 61.436 63.158 0.00 0.00 0.00 5.52
13 14 0.034059 CGATGGTCCACCTATGCTCC 59.966 60.000 0.00 0.00 36.82 4.70
33 34 2.932614 CTCACAATCCATTCGGTCTCAC 59.067 50.000 0.00 0.00 0.00 3.51
67 70 0.039256 CACCGCTCAAACCACCATTG 60.039 55.000 0.00 0.00 0.00 2.82
71 74 0.951040 CTCTCACCGCTCAAACCACC 60.951 60.000 0.00 0.00 0.00 4.61
73 76 1.118965 TCCTCTCACCGCTCAAACCA 61.119 55.000 0.00 0.00 0.00 3.67
85 88 0.040351 CCCACACTCCTCTCCTCTCA 59.960 60.000 0.00 0.00 0.00 3.27
143 151 1.509644 CTTGCACGCCTGAAGAAGCA 61.510 55.000 0.00 0.00 0.00 3.91
145 153 1.208614 GCTTGCACGCCTGAAGAAG 59.791 57.895 3.29 0.00 0.00 2.85
150 158 4.600576 TGTCGCTTGCACGCCTGA 62.601 61.111 9.88 0.00 0.00 3.86
151 159 4.081030 CTGTCGCTTGCACGCCTG 62.081 66.667 9.88 0.00 0.00 4.85
156 164 4.374702 CGTGGCTGTCGCTTGCAC 62.375 66.667 0.00 0.00 36.09 4.57
209 217 0.528033 CCTCAGCGACATGAGCAGAG 60.528 60.000 22.72 22.72 44.47 3.35
210 218 1.253593 ACCTCAGCGACATGAGCAGA 61.254 55.000 17.25 14.01 44.47 4.26
217 225 0.317160 TTCGTGAACCTCAGCGACAT 59.683 50.000 0.00 0.00 32.68 3.06
239 247 3.148340 GGATGTCCGTGTTACACCC 57.852 57.895 10.10 0.19 0.00 4.61
265 273 4.965119 AACTCTCGGGATGTAATTTTGC 57.035 40.909 0.00 0.00 0.00 3.68
275 283 1.123928 CCTAGCCAAACTCTCGGGAT 58.876 55.000 0.00 0.00 0.00 3.85
345 2255 3.056179 AGTTCTCTCTTGTAGCTTGAGGC 60.056 47.826 0.00 0.00 42.19 4.70
401 2329 0.107410 TGAGCCACAACCGTTGAACT 60.107 50.000 18.19 10.95 0.00 3.01
443 2371 1.164411 CGCAGAGAGAGAGAGTGTGT 58.836 55.000 0.00 0.00 0.00 3.72
445 2373 0.326595 TCCGCAGAGAGAGAGAGTGT 59.673 55.000 0.00 0.00 0.00 3.55
447 2375 0.908910 TCTCCGCAGAGAGAGAGAGT 59.091 55.000 0.00 0.00 44.42 3.24
514 2468 5.297029 GCAACATGGAATCTAGTTAGTTCCC 59.703 44.000 0.00 0.00 40.51 3.97
560 2514 0.527817 GGTTCGTGTATCCTCTGCGG 60.528 60.000 0.00 0.00 0.00 5.69
574 2528 4.451150 TGCCTAGCGCCTGGTTCG 62.451 66.667 16.14 0.00 36.24 3.95
610 2564 1.227853 GGGTGACTCGGCAGTTGTT 60.228 57.895 0.00 0.00 30.63 2.83
619 2573 0.673644 AAAGATTGCCGGGTGACTCG 60.674 55.000 2.18 0.00 0.00 4.18
623 2577 1.243902 GTCAAAAGATTGCCGGGTGA 58.756 50.000 2.18 0.00 36.45 4.02
647 2601 5.521372 TGATTTCTGTAGTTCATCAGATGCG 59.479 40.000 5.41 0.00 39.85 4.73
755 2709 8.480643 AATACAGTGATCAGCTAACAAAGTAC 57.519 34.615 0.00 0.00 0.00 2.73
780 2734 5.752892 TTGTGTGCACGGTTCTATAAAAA 57.247 34.783 13.13 0.00 0.00 1.94
792 2747 1.439353 AAGACCAGCTTGTGTGCACG 61.439 55.000 13.13 0.00 34.93 5.34
794 2749 1.543208 CCTAAGACCAGCTTGTGTGCA 60.543 52.381 0.00 0.00 37.42 4.57
815 2770 1.294659 CGCTTTGCTCTGGACTGGAC 61.295 60.000 0.00 0.00 0.00 4.02
816 2771 1.004560 CGCTTTGCTCTGGACTGGA 60.005 57.895 0.00 0.00 0.00 3.86
817 2772 2.037136 CCGCTTTGCTCTGGACTGG 61.037 63.158 0.00 0.00 0.00 4.00
818 2773 2.684843 GCCGCTTTGCTCTGGACTG 61.685 63.158 0.00 0.00 0.00 3.51
819 2774 2.359230 GCCGCTTTGCTCTGGACT 60.359 61.111 0.00 0.00 0.00 3.85
850 2805 3.305131 GGGGTACGGCTTTCTTCTTTTTG 60.305 47.826 0.00 0.00 0.00 2.44
851 2806 2.889045 GGGGTACGGCTTTCTTCTTTTT 59.111 45.455 0.00 0.00 0.00 1.94
852 2807 2.511659 GGGGTACGGCTTTCTTCTTTT 58.488 47.619 0.00 0.00 0.00 2.27
876 2832 0.735978 GGCCCAAATTTGTACAGCGC 60.736 55.000 16.73 0.00 0.00 5.92
922 2878 2.592574 GAGTGTGCAGTGCAGGCA 60.593 61.111 20.42 11.52 40.08 4.75
931 2887 0.100325 CTTGCGGTTTTGAGTGTGCA 59.900 50.000 0.00 0.00 0.00 4.57
932 2888 1.208642 GCTTGCGGTTTTGAGTGTGC 61.209 55.000 0.00 0.00 0.00 4.57
933 2889 0.100325 TGCTTGCGGTTTTGAGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
934 2890 0.381801 CTGCTTGCGGTTTTGAGTGT 59.618 50.000 0.00 0.00 0.00 3.55
935 2891 0.936297 GCTGCTTGCGGTTTTGAGTG 60.936 55.000 3.26 0.00 0.00 3.51
1022 2981 2.353406 GCATGCAAGAAATTCACTGGCT 60.353 45.455 14.21 0.00 35.55 4.75
1023 2982 1.997606 GCATGCAAGAAATTCACTGGC 59.002 47.619 14.21 5.38 35.14 4.85
1024 2983 3.057104 TCTGCATGCAAGAAATTCACTGG 60.057 43.478 22.88 5.10 0.00 4.00
1025 2984 4.168922 TCTGCATGCAAGAAATTCACTG 57.831 40.909 22.88 5.31 0.00 3.66
1044 3003 1.500474 TGGCGAGGGAGATTTGATCT 58.500 50.000 0.00 0.00 43.70 2.75
1111 3070 1.529244 AACCACCTTCTGCTGCCAC 60.529 57.895 0.00 0.00 0.00 5.01
1189 3148 5.294552 GCAAGTTACTTCACCATAGATGTCC 59.705 44.000 0.00 0.00 0.00 4.02
1255 3220 2.836981 AGTCAAGTCAGGATAGCAAGCT 59.163 45.455 0.00 0.00 0.00 3.74
1287 3302 2.161808 CGGCTATCGAATCGATACCTGT 59.838 50.000 26.01 9.86 45.13 4.00
1301 3316 1.883084 CTTGTGGTCCGCGGCTATC 60.883 63.158 23.51 4.90 0.00 2.08
1333 3348 3.324846 GCTGTCCATATCACCTATCACCA 59.675 47.826 0.00 0.00 0.00 4.17
1377 3392 1.952621 TCGATCCTCCCAAACTTCCT 58.047 50.000 0.00 0.00 0.00 3.36
1424 3439 6.295249 CCCTTTCTTATCATCCTTCTTCTCC 58.705 44.000 0.00 0.00 0.00 3.71
1513 3540 4.143094 GCCAAGAAACTCAGTATGTTCGTC 60.143 45.833 0.00 0.00 37.40 4.20
1550 3577 5.163332 GGTACCCAGATAACTGAACTTAGGG 60.163 48.000 0.00 0.00 46.03 3.53
1591 3619 9.944376 AAATTCTGAATGCTTTACTACTCTGTA 57.056 29.630 3.22 0.00 0.00 2.74
1592 3620 8.854614 AAATTCTGAATGCTTTACTACTCTGT 57.145 30.769 3.22 0.00 0.00 3.41
1605 3633 5.415701 TCACCTCTGGTTAAATTCTGAATGC 59.584 40.000 3.22 0.00 31.02 3.56
1715 3764 5.891451 AGAAACTGAGCCAAAAACACTTAC 58.109 37.500 0.00 0.00 0.00 2.34
1753 3803 2.618709 GCACTTTAGGCACTTTGTGAGT 59.381 45.455 1.52 0.00 41.75 3.41
1771 3821 1.547820 TCCATGTCTCTGTCTCTGCAC 59.452 52.381 0.00 0.00 0.00 4.57
1789 3839 7.065204 GTGATTTCCTACTCTGTTCAGAAATCC 59.935 40.741 16.42 7.81 44.41 3.01
1807 3857 5.048294 AGTTTGTAATTCGGTGGTGATTTCC 60.048 40.000 0.00 0.00 0.00 3.13
1836 3886 9.781834 GATTGGTATTTTTGACGATTATTCACA 57.218 29.630 0.00 0.00 0.00 3.58
1962 5147 4.844655 ACCCTTCCAGTTGAATAGTAGTGT 59.155 41.667 0.00 0.00 31.06 3.55
1963 5148 5.420409 GACCCTTCCAGTTGAATAGTAGTG 58.580 45.833 0.00 0.00 31.06 2.74
2008 5193 1.607148 TCGTCGAGTATGGCATAGGTG 59.393 52.381 7.61 0.53 0.00 4.00
2013 5198 3.894257 CCATCGTCGAGTATGGCAT 57.106 52.632 11.88 4.88 36.50 4.40
2081 5278 0.032678 CCTATAGCCTGTGTGAGCGG 59.967 60.000 0.00 0.00 0.00 5.52
2091 5288 1.604023 CGAGCCCGACCTATAGCCT 60.604 63.158 0.00 0.00 38.22 4.58
2179 5376 3.755628 GGCTCTACGTGTCGGCCA 61.756 66.667 2.24 0.00 42.08 5.36
2205 5402 4.147322 GGCGGTGTCGAACATGCG 62.147 66.667 0.00 0.00 39.00 4.73
2324 5521 4.416738 GTGGTCAGCCCCTGCCTC 62.417 72.222 7.05 1.74 38.69 4.70
2330 5527 4.416738 GAGCAGGTGGTCAGCCCC 62.417 72.222 4.30 0.00 41.81 5.80
2440 5637 1.591059 CCGCTCTTCTCCATGCTCG 60.591 63.158 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.