Multiple sequence alignment - TraesCS2A01G368700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G368700 chr2A 100.000 6680 0 0 1 6680 611970901 611964222 0.000000e+00 12336.0
1 TraesCS2A01G368700 chr2A 93.750 48 3 0 6629 6676 761762441 761762488 9.290000e-09 73.1
2 TraesCS2A01G368700 chr2B 90.923 2016 121 34 3887 5860 549196891 549194896 0.000000e+00 2652.0
3 TraesCS2A01G368700 chr2B 89.939 1312 92 19 2053 3332 549198987 549197684 0.000000e+00 1655.0
4 TraesCS2A01G368700 chr2B 90.018 561 40 12 3330 3881 549197594 549197041 0.000000e+00 712.0
5 TraesCS2A01G368700 chr2B 84.501 671 44 28 749 1388 549200224 549199583 5.730000e-170 608.0
6 TraesCS2A01G368700 chr2B 89.619 472 35 10 14 473 549201252 549200783 7.460000e-164 588.0
7 TraesCS2A01G368700 chr2B 91.304 345 15 7 1494 1837 549199487 549199157 2.200000e-124 457.0
8 TraesCS2A01G368700 chr2B 92.000 75 5 1 476 550 549200753 549200680 3.300000e-18 104.0
9 TraesCS2A01G368700 chr2B 95.745 47 2 0 6630 6676 796079110 796079064 7.180000e-10 76.8
10 TraesCS2A01G368700 chr2B 92.308 52 2 2 6623 6673 640960391 640960441 9.290000e-09 73.1
11 TraesCS2A01G368700 chr2D 92.716 1469 79 14 3882 5347 470229803 470228360 0.000000e+00 2095.0
12 TraesCS2A01G368700 chr2D 85.672 1354 119 34 1993 3302 470231719 470230397 0.000000e+00 1356.0
13 TraesCS2A01G368700 chr2D 92.615 501 27 6 3330 3827 470230292 470229799 0.000000e+00 712.0
14 TraesCS2A01G368700 chr2D 92.701 411 13 6 5440 5849 470228350 470227956 1.620000e-160 577.0
15 TraesCS2A01G368700 chr2D 82.796 186 19 10 746 927 470232873 470232697 3.230000e-33 154.0
16 TraesCS2A01G368700 chr2D 80.829 193 21 6 1636 1821 470232004 470231821 3.250000e-28 137.0
17 TraesCS2A01G368700 chr2D 82.036 167 24 5 141 303 470233392 470233228 3.250000e-28 137.0
18 TraesCS2A01G368700 chrUn 92.375 800 37 14 5849 6632 134108836 134109627 0.000000e+00 1118.0
19 TraesCS2A01G368700 chrUn 100.000 29 0 0 6487 6515 134109437 134109465 3.000000e-03 54.7
20 TraesCS2A01G368700 chrUn 100.000 29 0 0 6441 6469 134109483 134109511 3.000000e-03 54.7
21 TraesCS2A01G368700 chr1B 91.615 799 37 13 5849 6632 31370646 31369863 0.000000e+00 1077.0
22 TraesCS2A01G368700 chr1B 100.000 29 0 0 6441 6469 31370008 31369980 3.000000e-03 54.7
23 TraesCS2A01G368700 chr1B 100.000 29 0 0 6487 6515 31370054 31370026 3.000000e-03 54.7
24 TraesCS2A01G368700 chr7A 92.980 755 23 9 5881 6632 105211430 105212157 0.000000e+00 1074.0
25 TraesCS2A01G368700 chr7A 100.000 29 0 0 6487 6515 105211966 105211994 3.000000e-03 54.7
26 TraesCS2A01G368700 chr6D 96.364 495 16 2 6139 6632 159236707 159236214 0.000000e+00 813.0
27 TraesCS2A01G368700 chr6D 85.859 297 20 9 5849 6142 159242456 159242179 5.070000e-76 296.0
28 TraesCS2A01G368700 chr6D 86.667 90 9 3 660 747 57825667 57825579 5.510000e-16 97.1
29 TraesCS2A01G368700 chr6D 94.118 51 3 0 6630 6680 9063574 9063624 2.000000e-10 78.7
30 TraesCS2A01G368700 chr6D 91.489 47 4 0 5363 5409 12017253 12017207 1.550000e-06 65.8
31 TraesCS2A01G368700 chr6D 86.792 53 7 0 660 712 365847309 365847361 7.230000e-05 60.2
32 TraesCS2A01G368700 chr6D 100.000 30 0 0 6441 6470 159236358 159236329 1.000000e-03 56.5
33 TraesCS2A01G368700 chr4A 94.033 486 26 3 6149 6632 596705424 596705908 0.000000e+00 734.0
34 TraesCS2A01G368700 chr4A 90.175 285 22 2 6162 6445 14264611 14264890 3.810000e-97 366.0
35 TraesCS2A01G368700 chr4A 88.535 314 19 13 5849 6153 596692789 596693094 1.370000e-96 364.0
36 TraesCS2A01G368700 chr4A 88.235 187 21 1 5978 6163 478070218 478070404 8.720000e-54 222.0
37 TraesCS2A01G368700 chr4A 89.831 59 6 0 660 718 602399051 602399109 7.180000e-10 76.8
38 TraesCS2A01G368700 chr4A 100.000 29 0 0 6487 6515 596705717 596705745 3.000000e-03 54.7
39 TraesCS2A01G368700 chr4A 100.000 29 0 0 6441 6469 596705763 596705791 3.000000e-03 54.7
40 TraesCS2A01G368700 chr4D 92.281 285 16 3 6162 6445 452795810 452795531 3.750000e-107 399.0
41 TraesCS2A01G368700 chr3B 89.590 317 23 4 2840 3147 752379127 752378812 1.750000e-105 394.0
42 TraesCS2A01G368700 chr3B 92.254 142 11 0 2659 2800 296064906 296065047 1.140000e-47 202.0
43 TraesCS2A01G368700 chr3B 91.549 142 12 0 2659 2800 20830291 20830432 5.280000e-46 196.0
44 TraesCS2A01G368700 chr3B 89.091 55 4 2 6627 6680 52423257 52423204 4.320000e-07 67.6
45 TraesCS2A01G368700 chr3B 91.667 48 4 0 5363 5410 458328438 458328485 4.320000e-07 67.6
46 TraesCS2A01G368700 chr4B 91.228 285 19 2 6162 6445 565862053 565861774 3.780000e-102 383.0
47 TraesCS2A01G368700 chr5B 90.000 170 12 2 2662 2826 599314581 599314412 1.460000e-51 215.0
48 TraesCS2A01G368700 chr5B 90.265 113 10 1 3035 3147 599314412 599314301 5.400000e-31 147.0
49 TraesCS2A01G368700 chr5B 89.286 56 5 1 6626 6680 588782506 588782561 1.200000e-07 69.4
50 TraesCS2A01G368700 chr6A 100.000 54 0 0 4090 4143 52387701 52387754 4.260000e-17 100.0
51 TraesCS2A01G368700 chr6A 91.489 47 4 0 5363 5409 565470622 565470668 1.550000e-06 65.8
52 TraesCS2A01G368700 chr5A 92.308 52 4 0 6629 6680 502530992 502531043 2.580000e-09 75.0
53 TraesCS2A01G368700 chr7B 92.157 51 4 0 6630 6680 731149381 731149431 9.290000e-09 73.1
54 TraesCS2A01G368700 chr7B 91.489 47 4 0 5363 5409 745216501 745216547 1.550000e-06 65.8
55 TraesCS2A01G368700 chr7B 82.667 75 9 4 5364 5436 61074187 61074115 5.590000e-06 63.9
56 TraesCS2A01G368700 chr5D 90.741 54 4 1 6627 6680 522143061 522143113 3.340000e-08 71.3
57 TraesCS2A01G368700 chr7D 87.931 58 3 4 5354 5408 214345406 214345462 1.550000e-06 65.8
58 TraesCS2A01G368700 chr6B 91.489 47 4 0 5363 5409 400737675 400737721 1.550000e-06 65.8
59 TraesCS2A01G368700 chr3A 88.679 53 6 0 5364 5416 88204243 88204191 1.550000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G368700 chr2A 611964222 611970901 6679 True 12336.000000 12336 100.000000 1 6680 1 chr2A.!!$R1 6679
1 TraesCS2A01G368700 chr2B 549194896 549201252 6356 True 968.000000 2652 89.757714 14 5860 7 chr2B.!!$R2 5846
2 TraesCS2A01G368700 chr2D 470227956 470233392 5436 True 738.285714 2095 87.052143 141 5849 7 chr2D.!!$R1 5708
3 TraesCS2A01G368700 chrUn 134108836 134109627 791 False 409.133333 1118 97.458333 5849 6632 3 chrUn.!!$F1 783
4 TraesCS2A01G368700 chr1B 31369863 31370646 783 True 395.466667 1077 97.205000 5849 6632 3 chr1B.!!$R1 783
5 TraesCS2A01G368700 chr7A 105211430 105212157 727 False 564.350000 1074 96.490000 5881 6632 2 chr7A.!!$F1 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 264 0.110373 GCGTGTGCGTTTTTAGGGAG 60.110 55.0 0.00 0.00 40.81 4.30 F
1301 1728 0.318441 CGAGCTCTCCAACTGGAACA 59.682 55.0 12.85 0.00 44.91 3.18 F
1548 2011 0.036577 ATTCTTGCTGCACGCTCTCT 60.037 50.0 0.00 0.00 40.11 3.10 F
1550 2013 0.172127 TCTTGCTGCACGCTCTCTAG 59.828 55.0 0.00 0.00 40.11 2.43 F
2063 2642 0.541392 TATGTCCCGCTGCAACTCAT 59.459 50.0 0.00 1.88 0.00 2.90 F
3262 3890 0.388659 AAATTGCTGTTTGCCGCTGA 59.611 45.0 0.00 0.00 42.00 4.26 F
3979 4851 0.040058 ATGGATGCAGGCAAGGACAA 59.960 50.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1868 0.107993 CTCGGCTCCTTCATCTTGCA 60.108 55.0 0.00 0.00 0.00 4.08 R
2344 2924 0.038343 ATGTTTTGCATGTCACCGGC 60.038 50.0 0.00 0.00 36.26 6.13 R
2511 3106 0.185901 AGCTCCTTGAGGTTTGCCAA 59.814 50.0 0.00 0.00 37.04 4.52 R
2673 3268 0.523966 AGGAGAAGAGACGTGCTTCG 59.476 55.0 17.28 0.84 44.88 3.79 R
3961 4833 0.040058 ATTGTCCTTGCCTGCATCCA 59.960 50.0 0.00 0.00 0.00 3.41 R
4562 5439 0.036010 CTGGCCACTTCTACCACCTG 60.036 60.0 0.00 0.00 0.00 4.00 R
5720 6633 0.171455 GCCCGTCAAAACACACACAA 59.829 50.0 0.00 0.00 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.934083 GGGTGCACCAACTCTCTTC 58.066 57.895 35.78 12.57 39.85 2.87
71 72 4.920640 TCCAAAGGTTTTTGCGTCATTA 57.079 36.364 0.00 0.00 41.87 1.90
72 73 5.461032 TCCAAAGGTTTTTGCGTCATTAT 57.539 34.783 0.00 0.00 41.87 1.28
73 74 5.226396 TCCAAAGGTTTTTGCGTCATTATG 58.774 37.500 0.00 0.00 41.87 1.90
74 75 4.143137 CCAAAGGTTTTTGCGTCATTATGC 60.143 41.667 0.00 0.00 41.87 3.14
75 76 2.862512 AGGTTTTTGCGTCATTATGCG 58.137 42.857 5.05 5.05 40.77 4.73
76 77 2.227865 AGGTTTTTGCGTCATTATGCGT 59.772 40.909 9.77 0.00 40.77 5.24
84 86 5.977171 TGCGTCATTATGCGTAGTAAAAT 57.023 34.783 9.77 0.00 40.77 1.82
101 103 7.408756 AGTAAAATCAGCCAATCAAATAGCA 57.591 32.000 0.00 0.00 0.00 3.49
103 105 8.313292 AGTAAAATCAGCCAATCAAATAGCAAA 58.687 29.630 0.00 0.00 0.00 3.68
112 114 6.729187 CCAATCAAATAGCAAAGCTAGGTAC 58.271 40.000 4.92 0.00 44.66 3.34
120 126 2.798853 GCAAAGCTAGGTACGGCTAGTC 60.799 54.545 0.00 0.00 40.69 2.59
184 190 5.751990 ACACCGAACGAAACCATATCTTATC 59.248 40.000 0.00 0.00 0.00 1.75
185 191 5.983720 CACCGAACGAAACCATATCTTATCT 59.016 40.000 0.00 0.00 0.00 1.98
186 192 6.479001 CACCGAACGAAACCATATCTTATCTT 59.521 38.462 0.00 0.00 0.00 2.40
187 193 7.650504 CACCGAACGAAACCATATCTTATCTTA 59.349 37.037 0.00 0.00 0.00 2.10
190 196 8.162880 CGAACGAAACCATATCTTATCTTATGC 58.837 37.037 0.00 0.00 0.00 3.14
192 198 8.539770 ACGAAACCATATCTTATCTTATGCAG 57.460 34.615 0.00 0.00 0.00 4.41
193 199 8.367911 ACGAAACCATATCTTATCTTATGCAGA 58.632 33.333 0.00 0.00 35.33 4.26
194 200 9.376075 CGAAACCATATCTTATCTTATGCAGAT 57.624 33.333 0.00 0.00 45.08 2.90
252 264 0.110373 GCGTGTGCGTTTTTAGGGAG 60.110 55.000 0.00 0.00 40.81 4.30
322 356 7.936847 TGGTACTTGGAATCGCATTAGATATTT 59.063 33.333 0.00 0.00 0.00 1.40
438 508 2.101770 GTGTCCCGGTCGATCGAC 59.898 66.667 34.70 34.70 43.87 4.20
439 509 2.045634 TGTCCCGGTCGATCGACT 60.046 61.111 38.48 0.00 44.04 4.18
446 516 0.589229 CGGTCGATCGACTGTACAGC 60.589 60.000 37.51 23.15 44.19 4.40
473 543 1.068055 TGGTACTTCCGAGCTTTCGTC 60.068 52.381 0.00 0.00 39.52 4.20
503 600 7.519970 CGGTACAAGTTGAATCTAGCAAGTTTT 60.520 37.037 10.54 0.00 36.92 2.43
531 628 3.869272 GCTGTGCGGGAGATTGCG 61.869 66.667 0.00 0.00 0.00 4.85
532 629 3.197790 CTGTGCGGGAGATTGCGG 61.198 66.667 0.00 0.00 0.00 5.69
556 661 1.966901 TTGCTCGTGTGTGGAGTGGT 61.967 55.000 0.00 0.00 34.00 4.16
569 674 2.661866 GTGGTGCACGCTCGAACT 60.662 61.111 11.45 0.00 0.00 3.01
570 675 2.355837 TGGTGCACGCTCGAACTC 60.356 61.111 11.45 0.00 0.00 3.01
572 677 2.729862 GTGCACGCTCGAACTCGT 60.730 61.111 0.00 1.84 40.80 4.18
573 678 1.441515 GTGCACGCTCGAACTCGTA 60.442 57.895 0.00 0.00 40.80 3.43
575 680 2.486322 GCACGCTCGAACTCGTACG 61.486 63.158 9.53 9.53 41.60 3.67
577 682 2.277120 CGCTCGAACTCGTACGGG 60.277 66.667 15.01 15.01 40.80 5.28
579 684 2.277120 CTCGAACTCGTACGGGCG 60.277 66.667 16.75 12.12 40.80 6.13
580 685 3.031964 CTCGAACTCGTACGGGCGT 62.032 63.158 16.75 2.71 40.80 5.68
581 686 1.695893 CTCGAACTCGTACGGGCGTA 61.696 60.000 16.75 0.00 40.80 4.42
599 750 2.354510 CGTACCCCGTATTCTCACGTAA 59.645 50.000 0.00 0.00 40.31 3.18
632 801 3.805207 CATGTAGGGGTGGCTAAGTTAC 58.195 50.000 0.00 0.00 0.00 2.50
637 806 5.727766 TGTAGGGGTGGCTAAGTTACTTAAT 59.272 40.000 6.29 0.00 0.00 1.40
641 810 6.388983 AGGGGTGGCTAAGTTACTTAATGTAT 59.611 38.462 6.29 0.00 0.00 2.29
642 811 7.058525 GGGGTGGCTAAGTTACTTAATGTATT 58.941 38.462 6.29 0.00 0.00 1.89
643 812 7.228108 GGGGTGGCTAAGTTACTTAATGTATTC 59.772 40.741 6.29 0.00 0.00 1.75
644 813 7.991460 GGGTGGCTAAGTTACTTAATGTATTCT 59.009 37.037 6.29 0.00 0.00 2.40
645 814 9.043079 GGTGGCTAAGTTACTTAATGTATTCTC 57.957 37.037 6.29 0.00 0.00 2.87
646 815 9.819267 GTGGCTAAGTTACTTAATGTATTCTCT 57.181 33.333 6.29 0.00 0.00 3.10
647 816 9.817809 TGGCTAAGTTACTTAATGTATTCTCTG 57.182 33.333 6.29 0.00 0.00 3.35
670 839 9.890629 TCTGATTCATATTACTTACTTGTTGCT 57.109 29.630 0.00 0.00 0.00 3.91
672 841 9.665719 TGATTCATATTACTTACTTGTTGCTGA 57.334 29.630 0.00 0.00 0.00 4.26
686 855 4.325972 TGTTGCTGAAACAGATGCATCTA 58.674 39.130 28.27 12.15 43.96 1.98
688 857 5.241285 TGTTGCTGAAACAGATGCATCTAAA 59.759 36.000 28.27 11.44 43.96 1.85
690 859 4.142838 TGCTGAAACAGATGCATCTAAACG 60.143 41.667 28.27 18.14 34.85 3.60
691 860 4.142816 GCTGAAACAGATGCATCTAAACGT 60.143 41.667 28.27 18.79 34.85 3.99
694 863 7.609760 TGAAACAGATGCATCTAAACGTATT 57.390 32.000 28.27 16.69 34.85 1.89
695 864 8.039603 TGAAACAGATGCATCTAAACGTATTT 57.960 30.769 28.27 17.74 34.85 1.40
696 865 8.175069 TGAAACAGATGCATCTAAACGTATTTC 58.825 33.333 28.27 23.31 34.85 2.17
697 866 7.609760 AACAGATGCATCTAAACGTATTTCA 57.390 32.000 28.27 0.00 34.85 2.69
700 869 7.121911 CAGATGCATCTAAACGTATTTCAGTG 58.878 38.462 28.27 7.87 34.85 3.66
702 871 4.935205 TGCATCTAAACGTATTTCAGTGCT 59.065 37.500 0.00 0.00 0.00 4.40
705 874 6.475727 GCATCTAAACGTATTTCAGTGCTAGA 59.524 38.462 0.00 0.00 0.00 2.43
706 875 7.169982 GCATCTAAACGTATTTCAGTGCTAGAT 59.830 37.037 0.00 0.00 31.76 1.98
707 876 9.678941 CATCTAAACGTATTTCAGTGCTAGATA 57.321 33.333 0.00 0.00 31.08 1.98
713 882 9.847706 AACGTATTTCAGTGCTAGATATATCTG 57.152 33.333 23.03 14.38 37.76 2.90
715 884 9.847706 CGTATTTCAGTGCTAGATATATCTGTT 57.152 33.333 23.03 2.11 37.76 3.16
719 888 9.698309 TTTCAGTGCTAGATATATCTGTTAAGC 57.302 33.333 23.03 21.93 37.76 3.09
720 889 8.409358 TCAGTGCTAGATATATCTGTTAAGCA 57.591 34.615 24.51 24.51 40.52 3.91
721 890 8.860088 TCAGTGCTAGATATATCTGTTAAGCAA 58.140 33.333 27.72 16.53 42.83 3.91
722 891 8.920665 CAGTGCTAGATATATCTGTTAAGCAAC 58.079 37.037 27.72 22.48 42.83 4.17
723 892 8.091449 AGTGCTAGATATATCTGTTAAGCAACC 58.909 37.037 27.72 20.16 42.83 3.77
726 895 9.442047 GCTAGATATATCTGTTAAGCAACCAAT 57.558 33.333 23.03 0.00 35.74 3.16
734 903 8.995027 ATCTGTTAAGCAACCAATAATATGGA 57.005 30.769 0.00 0.00 43.54 3.41
737 906 7.870826 TGTTAAGCAACCAATAATATGGATCG 58.129 34.615 0.00 0.00 43.54 3.69
738 907 5.964958 AAGCAACCAATAATATGGATCGG 57.035 39.130 0.00 0.00 43.54 4.18
740 909 5.248640 AGCAACCAATAATATGGATCGGAG 58.751 41.667 0.00 0.00 43.54 4.63
741 910 5.013079 AGCAACCAATAATATGGATCGGAGA 59.987 40.000 0.00 0.00 43.54 3.71
742 911 5.705441 GCAACCAATAATATGGATCGGAGAA 59.295 40.000 0.00 0.00 43.54 2.87
744 913 7.573843 GCAACCAATAATATGGATCGGAGAAAG 60.574 40.741 0.00 0.00 43.54 2.62
747 916 8.826765 ACCAATAATATGGATCGGAGAAAGTAT 58.173 33.333 0.00 0.00 43.54 2.12
795 1163 3.547746 GTTTGGTTGTCCTGTTGGAGTA 58.452 45.455 0.00 0.00 44.16 2.59
796 1164 4.142038 GTTTGGTTGTCCTGTTGGAGTAT 58.858 43.478 0.00 0.00 44.16 2.12
797 1165 3.417069 TGGTTGTCCTGTTGGAGTATG 57.583 47.619 0.00 0.00 44.16 2.39
816 1184 1.756375 GCTTGTGCGAGCGTGATAGG 61.756 60.000 0.00 0.00 32.23 2.57
817 1185 1.756375 CTTGTGCGAGCGTGATAGGC 61.756 60.000 0.00 0.00 0.00 3.93
818 1186 2.962253 GTGCGAGCGTGATAGGCC 60.962 66.667 0.00 0.00 0.00 5.19
819 1187 3.147595 TGCGAGCGTGATAGGCCT 61.148 61.111 11.78 11.78 0.00 5.19
870 1238 3.056328 GTGCAACTTCCTCGCCCC 61.056 66.667 0.00 0.00 0.00 5.80
910 1294 3.235195 CTCCTACAAACTCGAGTGAACG 58.765 50.000 20.85 10.33 0.00 3.95
931 1339 0.553819 ACGGGGCTCTAGAGATGACT 59.446 55.000 24.24 0.00 0.00 3.41
933 1341 2.156098 CGGGGCTCTAGAGATGACTAC 58.844 57.143 24.24 3.36 0.00 2.73
934 1342 2.521126 GGGGCTCTAGAGATGACTACC 58.479 57.143 24.24 12.32 0.00 3.18
935 1343 2.158445 GGGGCTCTAGAGATGACTACCA 60.158 54.545 24.24 0.00 0.00 3.25
936 1344 2.888414 GGGCTCTAGAGATGACTACCAC 59.112 54.545 24.24 0.00 0.00 4.16
937 1345 2.550606 GGCTCTAGAGATGACTACCACG 59.449 54.545 24.24 0.00 0.00 4.94
938 1346 3.207778 GCTCTAGAGATGACTACCACGT 58.792 50.000 24.24 0.00 0.00 4.49
939 1347 3.002862 GCTCTAGAGATGACTACCACGTG 59.997 52.174 24.24 9.08 0.00 4.49
940 1348 4.443621 CTCTAGAGATGACTACCACGTGA 58.556 47.826 19.30 0.00 0.00 4.35
941 1349 4.840271 TCTAGAGATGACTACCACGTGAA 58.160 43.478 19.30 3.51 0.00 3.18
942 1350 5.250982 TCTAGAGATGACTACCACGTGAAA 58.749 41.667 19.30 3.10 0.00 2.69
943 1351 4.866508 AGAGATGACTACCACGTGAAAA 57.133 40.909 19.30 0.26 0.00 2.29
961 1369 1.204113 AAGAACAGGCCCTCCTCTGG 61.204 60.000 0.00 0.00 41.93 3.86
1017 1434 4.853050 ATGGCGAGGCTGCTGCTC 62.853 66.667 15.64 9.71 39.59 4.26
1132 1555 4.363990 CAGACGACGGTGCTGCCT 62.364 66.667 0.00 0.00 34.25 4.75
1136 1559 4.389576 CGACGGTGCTGCCTTTGC 62.390 66.667 0.00 0.00 38.26 3.68
1142 1565 2.918802 TGCTGCCTTTGCCCTTGG 60.919 61.111 0.00 0.00 36.33 3.61
1159 1582 5.830457 GCCCTTGGCTCTCTTATATTTTCTT 59.170 40.000 0.00 0.00 46.69 2.52
1175 1598 2.975410 TCTTCTGCTTTTCATGCGTG 57.025 45.000 0.00 0.00 0.00 5.34
1191 1618 0.861837 CGTGTTCTTCAGTGGCTGAC 59.138 55.000 0.00 0.00 40.46 3.51
1199 1626 2.282040 AGTGGCTGACTGCTTGCC 60.282 61.111 4.20 0.00 46.26 4.52
1301 1728 0.318441 CGAGCTCTCCAACTGGAACA 59.682 55.000 12.85 0.00 44.91 3.18
1385 1812 3.274288 GTGGCTCTGTAAGAATCCCTTG 58.726 50.000 0.00 0.00 46.34 3.61
1388 1815 4.721776 TGGCTCTGTAAGAATCCCTTGTAT 59.278 41.667 0.00 0.00 46.34 2.29
1391 1818 7.092623 TGGCTCTGTAAGAATCCCTTGTATTAA 60.093 37.037 0.00 0.00 46.34 1.40
1393 1820 9.343539 GCTCTGTAAGAATCCCTTGTATTAATT 57.656 33.333 0.00 0.00 46.34 1.40
1397 1824 9.847224 TGTAAGAATCCCTTGTATTAATTCCTC 57.153 33.333 0.00 0.00 36.34 3.71
1411 1858 6.636562 TTAATTCCTCTTTTTGTTACGCCA 57.363 33.333 0.00 0.00 0.00 5.69
1412 1859 3.974871 TTCCTCTTTTTGTTACGCCAC 57.025 42.857 0.00 0.00 0.00 5.01
1421 1868 1.254026 TGTTACGCCACTAGTCTGCT 58.746 50.000 11.13 3.01 0.00 4.24
1431 1878 3.593096 CACTAGTCTGCTGCAAGATGAA 58.407 45.455 3.02 0.00 34.07 2.57
1440 1887 0.107993 TGCAAGATGAAGGAGCCGAG 60.108 55.000 0.00 0.00 0.00 4.63
1454 1901 2.170985 CGAGTGCGCCGTTTCTTG 59.829 61.111 4.18 0.00 0.00 3.02
1460 1907 1.512734 GCGCCGTTTCTTGAGCATG 60.513 57.895 0.00 0.00 0.00 4.06
1465 1912 2.693069 CCGTTTCTTGAGCATGTCTCT 58.307 47.619 15.20 0.00 42.38 3.10
1469 1916 1.273759 TCTTGAGCATGTCTCTGGCT 58.726 50.000 15.20 0.00 42.38 4.75
1470 1917 1.066358 TCTTGAGCATGTCTCTGGCTG 60.066 52.381 15.20 0.00 42.38 4.85
1471 1918 0.675837 TTGAGCATGTCTCTGGCTGC 60.676 55.000 15.20 0.00 42.38 5.25
1472 1919 1.818785 GAGCATGTCTCTGGCTGCC 60.819 63.158 12.87 12.87 38.15 4.85
1473 1920 2.827642 GCATGTCTCTGGCTGCCC 60.828 66.667 17.53 0.00 0.00 5.36
1478 1925 1.130054 TGTCTCTGGCTGCCCTTTCT 61.130 55.000 17.53 0.00 0.00 2.52
1480 1927 0.546267 TCTCTGGCTGCCCTTTCTCT 60.546 55.000 17.53 0.00 0.00 3.10
1481 1928 0.392729 CTCTGGCTGCCCTTTCTCTG 60.393 60.000 17.53 0.00 0.00 3.35
1482 1929 1.130054 TCTGGCTGCCCTTTCTCTGT 61.130 55.000 17.53 0.00 0.00 3.41
1483 1930 0.959372 CTGGCTGCCCTTTCTCTGTG 60.959 60.000 17.53 0.00 0.00 3.66
1484 1931 2.338785 GGCTGCCCTTTCTCTGTGC 61.339 63.158 7.66 0.00 0.00 4.57
1486 1933 0.892814 GCTGCCCTTTCTCTGTGCTT 60.893 55.000 0.00 0.00 0.00 3.91
1488 1935 0.183492 TGCCCTTTCTCTGTGCTTGT 59.817 50.000 0.00 0.00 0.00 3.16
1489 1936 1.322442 GCCCTTTCTCTGTGCTTGTT 58.678 50.000 0.00 0.00 0.00 2.83
1490 1937 1.268079 GCCCTTTCTCTGTGCTTGTTC 59.732 52.381 0.00 0.00 0.00 3.18
1491 1938 1.532868 CCCTTTCTCTGTGCTTGTTCG 59.467 52.381 0.00 0.00 0.00 3.95
1542 2005 2.404265 TGAACAATTCTTGCTGCACG 57.596 45.000 0.00 0.00 0.00 5.34
1548 2011 0.036577 ATTCTTGCTGCACGCTCTCT 60.037 50.000 0.00 0.00 40.11 3.10
1550 2013 0.172127 TCTTGCTGCACGCTCTCTAG 59.828 55.000 0.00 0.00 40.11 2.43
1588 2057 3.715287 GGGGGTAGAAGAAGAAGACTCT 58.285 50.000 0.00 0.00 0.00 3.24
1590 2059 4.571148 GGGGGTAGAAGAAGAAGACTCTCT 60.571 50.000 0.00 0.00 0.00 3.10
1606 2075 2.674380 CTGGGCCAACAGCAGGAC 60.674 66.667 8.04 0.00 46.50 3.85
1617 2086 0.656259 CAGCAGGACAGAATGATGCG 59.344 55.000 0.00 0.00 44.10 4.73
1619 2088 0.654683 GCAGGACAGAATGATGCGTC 59.345 55.000 0.00 0.00 39.69 5.19
1620 2089 1.293924 CAGGACAGAATGATGCGTCC 58.706 55.000 2.83 6.39 46.85 4.79
1621 2090 3.458872 GGACAGAATGATGCGTCCA 57.541 52.632 2.83 0.00 45.96 4.02
1622 2091 1.737838 GGACAGAATGATGCGTCCAA 58.262 50.000 2.83 0.00 45.96 3.53
1623 2092 2.083774 GGACAGAATGATGCGTCCAAA 58.916 47.619 2.83 0.00 45.96 3.28
1624 2093 2.096496 GGACAGAATGATGCGTCCAAAG 59.904 50.000 2.83 0.00 45.96 2.77
1734 2211 5.523588 TCTCTCCTATCTTCAGTTGACCAT 58.476 41.667 0.00 0.00 0.00 3.55
1808 2291 5.397142 AGCCAATGGAATTCTCAGTTTTC 57.603 39.130 2.05 0.00 31.22 2.29
1810 2293 4.925646 GCCAATGGAATTCTCAGTTTTCAC 59.074 41.667 2.05 0.00 31.22 3.18
1814 2297 7.495279 CCAATGGAATTCTCAGTTTTCACAAAA 59.505 33.333 5.23 0.00 31.22 2.44
1815 2298 8.330302 CAATGGAATTCTCAGTTTTCACAAAAC 58.670 33.333 5.23 4.04 42.34 2.43
1837 2320 6.469782 ACAATCTTCAAATCCAAGTGTTGT 57.530 33.333 0.00 0.00 31.78 3.32
1838 2321 6.877236 ACAATCTTCAAATCCAAGTGTTGTT 58.123 32.000 0.00 0.00 32.22 2.83
1839 2322 7.330262 ACAATCTTCAAATCCAAGTGTTGTTT 58.670 30.769 0.00 0.00 32.22 2.83
1840 2323 7.823799 ACAATCTTCAAATCCAAGTGTTGTTTT 59.176 29.630 0.00 0.00 32.22 2.43
1841 2324 8.667463 CAATCTTCAAATCCAAGTGTTGTTTTT 58.333 29.630 0.00 0.00 0.00 1.94
1862 2345 6.790232 TTTTTCTGTGAGGAAAATCCAAGT 57.210 33.333 0.00 0.00 42.38 3.16
1863 2346 5.772825 TTTCTGTGAGGAAAATCCAAGTG 57.227 39.130 0.00 0.00 39.61 3.16
1864 2347 4.437682 TCTGTGAGGAAAATCCAAGTGT 57.562 40.909 0.00 0.00 39.61 3.55
1865 2348 4.792068 TCTGTGAGGAAAATCCAAGTGTT 58.208 39.130 0.00 0.00 39.61 3.32
1866 2349 4.580167 TCTGTGAGGAAAATCCAAGTGTTG 59.420 41.667 0.00 0.00 39.61 3.33
1867 2350 4.531854 TGTGAGGAAAATCCAAGTGTTGA 58.468 39.130 0.00 0.00 39.61 3.18
1868 2351 5.139727 TGTGAGGAAAATCCAAGTGTTGAT 58.860 37.500 0.00 0.00 39.61 2.57
1869 2352 5.598005 TGTGAGGAAAATCCAAGTGTTGATT 59.402 36.000 0.00 0.00 39.61 2.57
1870 2353 6.152379 GTGAGGAAAATCCAAGTGTTGATTC 58.848 40.000 0.00 0.00 39.61 2.52
1871 2354 6.015940 GTGAGGAAAATCCAAGTGTTGATTCT 60.016 38.462 0.00 0.00 39.61 2.40
1872 2355 6.550854 TGAGGAAAATCCAAGTGTTGATTCTT 59.449 34.615 0.00 0.00 39.61 2.52
1873 2356 7.069826 TGAGGAAAATCCAAGTGTTGATTCTTT 59.930 33.333 0.00 0.00 39.61 2.52
1874 2357 7.795047 AGGAAAATCCAAGTGTTGATTCTTTT 58.205 30.769 0.00 0.00 39.61 2.27
1875 2358 8.267183 AGGAAAATCCAAGTGTTGATTCTTTTT 58.733 29.630 0.00 0.00 39.61 1.94
1876 2359 8.337532 GGAAAATCCAAGTGTTGATTCTTTTTG 58.662 33.333 0.00 0.00 36.28 2.44
1877 2360 8.791327 AAAATCCAAGTGTTGATTCTTTTTGT 57.209 26.923 0.00 0.00 0.00 2.83
1878 2361 7.775397 AATCCAAGTGTTGATTCTTTTTGTG 57.225 32.000 0.00 0.00 0.00 3.33
1879 2362 6.522625 TCCAAGTGTTGATTCTTTTTGTGA 57.477 33.333 0.00 0.00 0.00 3.58
1880 2363 6.563422 TCCAAGTGTTGATTCTTTTTGTGAG 58.437 36.000 0.00 0.00 0.00 3.51
1881 2364 5.750067 CCAAGTGTTGATTCTTTTTGTGAGG 59.250 40.000 0.00 0.00 0.00 3.86
1882 2365 6.405731 CCAAGTGTTGATTCTTTTTGTGAGGA 60.406 38.462 0.00 0.00 0.00 3.71
1883 2366 6.773976 AGTGTTGATTCTTTTTGTGAGGAA 57.226 33.333 0.00 0.00 0.00 3.36
1884 2367 7.169158 AGTGTTGATTCTTTTTGTGAGGAAA 57.831 32.000 0.00 0.00 0.00 3.13
1885 2368 7.610865 AGTGTTGATTCTTTTTGTGAGGAAAA 58.389 30.769 0.00 0.00 0.00 2.29
1886 2369 8.260114 AGTGTTGATTCTTTTTGTGAGGAAAAT 58.740 29.630 0.00 0.00 0.00 1.82
1887 2370 8.542953 GTGTTGATTCTTTTTGTGAGGAAAATC 58.457 33.333 0.00 0.00 0.00 2.17
1888 2371 7.710475 TGTTGATTCTTTTTGTGAGGAAAATCC 59.290 33.333 0.00 0.00 36.58 3.01
1889 2372 7.358770 TGATTCTTTTTGTGAGGAAAATCCA 57.641 32.000 0.00 0.00 39.61 3.41
1890 2373 7.790027 TGATTCTTTTTGTGAGGAAAATCCAA 58.210 30.769 0.00 0.00 39.61 3.53
1891 2374 7.927629 TGATTCTTTTTGTGAGGAAAATCCAAG 59.072 33.333 0.00 0.00 39.61 3.61
1892 2375 6.790232 TCTTTTTGTGAGGAAAATCCAAGT 57.210 33.333 0.00 0.00 39.61 3.16
1893 2376 6.572519 TCTTTTTGTGAGGAAAATCCAAGTG 58.427 36.000 0.00 0.00 39.61 3.16
1894 2377 5.930837 TTTTGTGAGGAAAATCCAAGTGT 57.069 34.783 0.00 0.00 39.61 3.55
1912 2395 6.827586 AAGTGTTACTTGTCCAAAGTCAAA 57.172 33.333 0.00 0.00 37.00 2.69
1918 2401 9.349713 TGTTACTTGTCCAAAGTCAAATAAGAT 57.650 29.630 0.00 0.00 0.00 2.40
1924 2407 8.862325 TGTCCAAAGTCAAATAAGATACATGT 57.138 30.769 2.69 2.69 0.00 3.21
1948 2431 3.708563 AGTTTTGTGTACGCATGCTTT 57.291 38.095 17.13 4.93 0.00 3.51
1949 2432 3.371168 AGTTTTGTGTACGCATGCTTTG 58.629 40.909 17.13 2.44 0.00 2.77
1964 2448 2.032799 TGCTTTGCTCACGTTAACCAAG 59.967 45.455 0.00 0.00 0.00 3.61
1985 2494 5.113502 AGAAAGTTCAGCATTGCAGTTAC 57.886 39.130 11.91 6.24 0.00 2.50
1989 2568 7.824289 AGAAAGTTCAGCATTGCAGTTACTATA 59.176 33.333 11.91 0.00 0.00 1.31
1991 2570 7.488187 AGTTCAGCATTGCAGTTACTATATG 57.512 36.000 11.91 0.00 0.00 1.78
2023 2602 6.785191 TGTTGACAAACTTGATGTTCTTCTC 58.215 36.000 0.00 0.00 38.03 2.87
2024 2603 6.599244 TGTTGACAAACTTGATGTTCTTCTCT 59.401 34.615 0.00 0.00 38.03 3.10
2025 2604 6.851222 TGACAAACTTGATGTTCTTCTCTC 57.149 37.500 0.00 0.00 38.03 3.20
2026 2605 6.348498 TGACAAACTTGATGTTCTTCTCTCA 58.652 36.000 0.00 0.00 38.03 3.27
2027 2606 6.994496 TGACAAACTTGATGTTCTTCTCTCAT 59.006 34.615 0.00 0.00 38.03 2.90
2028 2607 7.500227 TGACAAACTTGATGTTCTTCTCTCATT 59.500 33.333 0.00 0.00 38.03 2.57
2029 2608 7.646314 ACAAACTTGATGTTCTTCTCTCATTG 58.354 34.615 0.00 0.00 38.03 2.82
2030 2609 7.284034 ACAAACTTGATGTTCTTCTCTCATTGT 59.716 33.333 0.00 0.00 38.03 2.71
2031 2610 8.777413 CAAACTTGATGTTCTTCTCTCATTGTA 58.223 33.333 0.00 0.00 38.03 2.41
2047 2626 9.941664 CTCTCATTGTAAGTAAATTGGCTTATG 57.058 33.333 5.59 2.89 31.02 1.90
2050 2629 8.682710 TCATTGTAAGTAAATTGGCTTATGTCC 58.317 33.333 5.59 0.00 31.02 4.02
2051 2630 7.399245 TTGTAAGTAAATTGGCTTATGTCCC 57.601 36.000 5.59 0.00 31.02 4.46
2057 2636 2.124736 GGCTTATGTCCCGCTGCA 60.125 61.111 0.00 0.00 0.00 4.41
2061 2640 1.009829 CTTATGTCCCGCTGCAACTC 58.990 55.000 0.00 0.00 0.00 3.01
2063 2642 0.541392 TATGTCCCGCTGCAACTCAT 59.459 50.000 0.00 1.88 0.00 2.90
2104 2683 1.036707 CATCTCTCTCGGGGTTCCTC 58.963 60.000 0.00 0.00 0.00 3.71
2162 2741 3.326588 ACTGTATGTGCTTGTAACCCTCA 59.673 43.478 0.00 0.00 0.00 3.86
2202 2781 0.662374 CGCCTGCAAGCAACTGAAAG 60.662 55.000 8.26 0.00 42.29 2.62
2344 2924 1.380380 GGGCCCATTCCAAGTGAGG 60.380 63.158 19.95 0.00 0.00 3.86
2380 2967 6.086241 GCAAAACATCACAACAATGTACTACG 59.914 38.462 0.00 0.00 37.82 3.51
2403 2990 4.216257 GCCAGAAGCTGTGATCAACTTTTA 59.784 41.667 0.00 0.00 38.99 1.52
2486 3081 1.736645 CGCGAATCGGTTGAGTGGT 60.737 57.895 0.00 0.00 33.78 4.16
2511 3106 2.654079 CCTCCTGAGCTCGGCAAGT 61.654 63.158 17.68 0.00 0.00 3.16
2514 3109 2.037136 CCTGAGCTCGGCAAGTTGG 61.037 63.158 17.68 0.00 0.00 3.77
2573 3168 2.629336 CAGGGACTATTCCTGGAAGC 57.371 55.000 15.34 4.33 45.95 3.86
2632 3227 7.433425 GTCTTTCAGAGTCTTCAAAACCAAATG 59.567 37.037 0.00 0.00 0.00 2.32
2657 3252 3.759618 TGTTTTCAGCATGCATGATCTGA 59.240 39.130 30.64 27.09 34.76 3.27
2671 3266 2.216898 GATCTGAATTCTGGAAGGGCG 58.783 52.381 11.89 0.00 0.00 6.13
2673 3268 1.378514 TGAATTCTGGAAGGGCGCC 60.379 57.895 21.18 21.18 0.00 6.53
2693 3288 1.068194 CGAAGCACGTCTCTTCTCCTT 60.068 52.381 19.08 0.26 38.17 3.36
2809 3404 1.597663 CGTTTCGAAACAAGCTGGAGT 59.402 47.619 33.45 0.00 38.81 3.85
2832 3427 5.946942 ATGAGACAAGATACAGTGACCAT 57.053 39.130 0.00 0.00 0.00 3.55
2881 3478 2.507484 CTTCTTCTGTGTGGGCATCAA 58.493 47.619 0.00 0.00 0.00 2.57
2882 3479 2.885135 TCTTCTGTGTGGGCATCAAT 57.115 45.000 0.00 0.00 0.00 2.57
2883 3480 2.439409 TCTTCTGTGTGGGCATCAATG 58.561 47.619 0.00 0.00 0.00 2.82
2884 3481 1.475280 CTTCTGTGTGGGCATCAATGG 59.525 52.381 0.00 0.00 0.00 3.16
2915 3514 9.198837 TGCATATGAATATGAAATTGTGATTGC 57.801 29.630 6.97 0.00 42.05 3.56
2922 3521 9.448294 GAATATGAAATTGTGATTGCTCTTCTC 57.552 33.333 0.00 0.00 0.00 2.87
2951 3550 4.453819 GTGTCCACCAAGAAAGAAGATCAG 59.546 45.833 0.00 0.00 0.00 2.90
3033 3632 1.398390 GAAGTATTCCTGCGTGCTTGG 59.602 52.381 0.00 0.00 39.83 3.61
3068 3667 5.876357 AGGTACATCTTTCTTTTGTGGCTA 58.124 37.500 0.00 0.00 0.00 3.93
3076 3675 3.829886 TCTTTTGTGGCTAGCATTTCG 57.170 42.857 18.24 0.00 0.00 3.46
3109 3708 6.803154 ATCTGAACTTACCTGTTTTACAGC 57.197 37.500 1.31 0.00 44.63 4.40
3161 3760 3.181488 TGCTTCCACAACAATGACACAAG 60.181 43.478 0.00 0.00 0.00 3.16
3178 3777 2.663196 GGAACCGTCCTGACTGGG 59.337 66.667 11.11 2.50 41.24 4.45
3210 3829 8.023128 ACGGTGATGAATCTTTAATGAAGTTTG 58.977 33.333 0.00 0.00 36.70 2.93
3235 3854 4.889409 TCCTATTTTCAGCACCATGATTCC 59.111 41.667 0.00 0.00 0.00 3.01
3241 3860 6.602410 TTTCAGCACCATGATTCCATTAAA 57.398 33.333 0.00 0.00 0.00 1.52
3242 3861 6.602410 TTCAGCACCATGATTCCATTAAAA 57.398 33.333 0.00 0.00 0.00 1.52
3243 3862 6.602410 TCAGCACCATGATTCCATTAAAAA 57.398 33.333 0.00 0.00 0.00 1.94
3262 3890 0.388659 AAATTGCTGTTTGCCGCTGA 59.611 45.000 0.00 0.00 42.00 4.26
3275 3903 2.742053 TGCCGCTGAGTTTCTGTAATTC 59.258 45.455 0.00 0.00 0.00 2.17
3302 3930 3.119459 AGAGCACGTAGACATTACCTGTG 60.119 47.826 0.00 0.00 38.54 3.66
3304 3932 2.094390 GCACGTAGACATTACCTGTGGA 60.094 50.000 0.00 0.00 38.54 4.02
3305 3933 3.508762 CACGTAGACATTACCTGTGGAC 58.491 50.000 0.00 0.00 38.54 4.02
3324 3952 3.133721 GGACAGATACATCCAGCAGTTCT 59.866 47.826 0.00 0.00 34.87 3.01
3325 3953 4.367450 GACAGATACATCCAGCAGTTCTC 58.633 47.826 0.00 0.00 0.00 2.87
3328 3956 5.658634 ACAGATACATCCAGCAGTTCTCTTA 59.341 40.000 0.00 0.00 0.00 2.10
3340 4059 6.965500 CAGCAGTTCTCTTATTGCAGTATTTG 59.035 38.462 0.00 0.00 38.97 2.32
3351 4070 9.906660 CTTATTGCAGTATTTGTTAAAGGAACA 57.093 29.630 0.00 0.00 46.56 3.18
3490 4216 7.826744 AGGAACTTAAAAATTGCCTGTTCAAAA 59.173 29.630 0.00 0.00 35.45 2.44
3505 4231 9.162764 GCCTGTTCAAAATTAGTAGACATTAGA 57.837 33.333 0.00 0.00 0.00 2.10
3519 4245 9.939424 AGTAGACATTAGAAAAGTAGGACCTAT 57.061 33.333 4.06 0.00 0.00 2.57
3521 4247 7.501844 AGACATTAGAAAAGTAGGACCTATGC 58.498 38.462 4.06 0.00 0.00 3.14
3531 4257 1.069823 AGGACCTATGCTGCGAATGAG 59.930 52.381 0.00 0.00 0.00 2.90
3547 4273 4.934001 CGAATGAGATCATGGGACCTATTG 59.066 45.833 0.00 0.00 36.56 1.90
3569 4295 4.225717 TGGGGTAGTGGGAATGTTAGTTAC 59.774 45.833 0.00 0.00 0.00 2.50
3641 4367 5.250543 TCTTGGACCCTTTCTATCACATTCA 59.749 40.000 0.00 0.00 0.00 2.57
3684 4410 6.882656 TGATCTCTTGTCCTAATCTTCTTGG 58.117 40.000 0.00 0.00 0.00 3.61
3687 4413 6.261435 TCTCTTGTCCTAATCTTCTTGGGTA 58.739 40.000 0.00 0.00 0.00 3.69
3689 4415 7.403231 TCTCTTGTCCTAATCTTCTTGGGTATT 59.597 37.037 0.00 0.00 0.00 1.89
3691 4417 7.829211 TCTTGTCCTAATCTTCTTGGGTATTTG 59.171 37.037 0.00 0.00 0.00 2.32
3692 4418 7.027874 TGTCCTAATCTTCTTGGGTATTTGT 57.972 36.000 0.00 0.00 0.00 2.83
3693 4419 7.110155 TGTCCTAATCTTCTTGGGTATTTGTC 58.890 38.462 0.00 0.00 0.00 3.18
3694 4420 6.542735 GTCCTAATCTTCTTGGGTATTTGTCC 59.457 42.308 0.00 0.00 0.00 4.02
3695 4421 6.216662 TCCTAATCTTCTTGGGTATTTGTCCA 59.783 38.462 0.00 0.00 0.00 4.02
3697 4423 6.590234 AATCTTCTTGGGTATTTGTCCAAC 57.410 37.500 0.00 0.00 38.04 3.77
3723 4449 8.405531 CGTATCCATGTTTTTCCAAGTATTCAT 58.594 33.333 0.00 0.00 0.00 2.57
3837 4563 8.964772 TGGTCTATACCTACTTTTCTTACTGAC 58.035 37.037 0.00 0.00 46.91 3.51
3844 4570 7.612677 ACCTACTTTTCTTACTGACATACCAG 58.387 38.462 0.00 0.00 39.93 4.00
3845 4571 7.042335 CCTACTTTTCTTACTGACATACCAGG 58.958 42.308 0.00 0.00 38.44 4.45
3850 4576 4.412843 TCTTACTGACATACCAGGACACA 58.587 43.478 0.00 0.00 38.44 3.72
3851 4577 5.023452 TCTTACTGACATACCAGGACACAT 58.977 41.667 0.00 0.00 38.44 3.21
3852 4578 5.483937 TCTTACTGACATACCAGGACACATT 59.516 40.000 0.00 0.00 38.44 2.71
3856 4582 6.539173 ACTGACATACCAGGACACATTTTTA 58.461 36.000 0.00 0.00 38.44 1.52
3857 4583 7.175104 ACTGACATACCAGGACACATTTTTAT 58.825 34.615 0.00 0.00 38.44 1.40
3976 4848 4.670199 CATGGATGCAGGCAAGGA 57.330 55.556 0.00 0.00 0.00 3.36
3977 4849 2.112898 CATGGATGCAGGCAAGGAC 58.887 57.895 0.00 0.00 0.00 3.85
3978 4850 0.681887 CATGGATGCAGGCAAGGACA 60.682 55.000 0.00 0.00 0.00 4.02
3979 4851 0.040058 ATGGATGCAGGCAAGGACAA 59.960 50.000 0.00 0.00 0.00 3.18
3980 4852 0.040058 TGGATGCAGGCAAGGACAAT 59.960 50.000 0.00 0.00 0.00 2.71
3981 4853 1.284491 TGGATGCAGGCAAGGACAATA 59.716 47.619 0.00 0.00 0.00 1.90
3988 4860 3.857010 GCAGGCAAGGACAATAACAACAC 60.857 47.826 0.00 0.00 0.00 3.32
4058 4930 0.809385 TCCTCATCGTGGAAGTCGTC 59.191 55.000 0.00 0.00 0.00 4.20
4161 5033 0.955428 TGTTCCATGGACAAGAGCGC 60.955 55.000 15.91 0.00 0.00 5.92
4203 5075 3.369147 CGTGATCTCAATTGGTCAGTGTC 59.631 47.826 5.42 0.85 0.00 3.67
4256 5128 9.724839 TGTGTACTGCTTTAGTTACAATTTTTC 57.275 29.630 0.00 0.00 40.89 2.29
4263 5135 9.980780 TGCTTTAGTTACAATTTTTCTTTTTGC 57.019 25.926 0.00 0.00 0.00 3.68
4430 5305 1.443872 GTCGTGTCGATGTCCGCTT 60.444 57.895 0.00 0.00 38.42 4.68
4497 5372 2.027377 AGGTGAGTTGATTGCTCTCCAG 60.027 50.000 13.56 0.00 44.57 3.86
4527 5404 3.832276 TGATGCCAAAGATTTTACACGC 58.168 40.909 0.00 0.00 0.00 5.34
4544 5421 2.868583 CACGCCTCTTTGACCATATCTG 59.131 50.000 0.00 0.00 0.00 2.90
4562 5439 0.472471 TGTTGGTGTCTTGGACCCTC 59.528 55.000 0.00 0.00 31.84 4.30
4579 5456 0.250513 CTCAGGTGGTAGAAGTGGCC 59.749 60.000 0.00 0.00 0.00 5.36
4588 5465 2.284190 GTAGAAGTGGCCAGATTGAGC 58.716 52.381 5.11 0.00 0.00 4.26
4597 5474 1.474077 GCCAGATTGAGCCACGAAAAT 59.526 47.619 0.00 0.00 0.00 1.82
4602 5479 1.861542 TTGAGCCACGAAAATGCCGG 61.862 55.000 0.00 0.00 0.00 6.13
4636 5513 1.519455 CTGCAAGTCGTCCGATCCC 60.519 63.158 0.00 0.00 0.00 3.85
4666 5543 1.246056 TGGTGGTCTTCGAGTACCCG 61.246 60.000 13.85 0.00 34.69 5.28
4667 5544 1.246737 GGTGGTCTTCGAGTACCCGT 61.247 60.000 13.85 0.00 34.69 5.28
4669 5546 1.300971 TGGTCTTCGAGTACCCGTCG 61.301 60.000 13.85 0.00 38.84 5.12
4703 5580 0.738975 CGAGCATCTCCACGGTAAGA 59.261 55.000 0.00 0.00 0.00 2.10
4711 5588 1.396996 CTCCACGGTAAGATTTTGGCG 59.603 52.381 0.00 0.00 0.00 5.69
4730 5607 3.439129 GGCGGTACTGAAAGCTTTGTAAT 59.561 43.478 18.30 1.75 37.60 1.89
4754 5638 1.881973 GCTGCATTTGAGAAGGTGACA 59.118 47.619 0.00 0.00 0.00 3.58
4755 5639 2.490903 GCTGCATTTGAGAAGGTGACAT 59.509 45.455 0.00 0.00 0.00 3.06
4785 5669 3.222603 GACTGAATCTTGTTGGTTGGGT 58.777 45.455 0.00 0.00 0.00 4.51
4786 5670 2.958355 ACTGAATCTTGTTGGTTGGGTG 59.042 45.455 0.00 0.00 0.00 4.61
4787 5671 2.958355 CTGAATCTTGTTGGTTGGGTGT 59.042 45.455 0.00 0.00 0.00 4.16
4788 5672 2.955660 TGAATCTTGTTGGTTGGGTGTC 59.044 45.455 0.00 0.00 0.00 3.67
4800 5684 1.664965 GGGTGTCTGTCGTGTGCTC 60.665 63.158 0.00 0.00 0.00 4.26
4956 5840 3.872182 TCTATCTGACGGAAGACTTCTCG 59.128 47.826 14.72 16.98 0.00 4.04
4973 5857 4.660938 GCCCAAGGTCGGCCTGTT 62.661 66.667 10.71 0.00 46.33 3.16
4974 5858 2.672996 CCCAAGGTCGGCCTGTTG 60.673 66.667 10.71 4.68 46.33 3.33
4975 5859 2.672996 CCAAGGTCGGCCTGTTGG 60.673 66.667 10.71 11.67 46.33 3.77
4976 5860 2.113139 CAAGGTCGGCCTGTTGGT 59.887 61.111 10.71 0.00 46.33 3.67
4977 5861 2.113139 AAGGTCGGCCTGTTGGTG 59.887 61.111 10.71 0.00 46.33 4.17
4984 5870 2.270986 GGCCTGTTGGTGCTTGGAG 61.271 63.158 0.00 0.00 35.27 3.86
5002 5888 2.176546 CATGGCGTCTTTGGTGCG 59.823 61.111 0.00 0.00 0.00 5.34
5020 5906 1.804151 GCGGTTGACAGCAAGATGTTA 59.196 47.619 1.37 0.00 37.03 2.41
5023 5909 4.219033 CGGTTGACAGCAAGATGTTAAAC 58.781 43.478 1.48 1.48 34.10 2.01
5025 5911 5.215160 GGTTGACAGCAAGATGTTAAACAG 58.785 41.667 15.16 0.00 36.62 3.16
5046 5932 2.297033 GCTGAGCTGAAATGGGTTTTGA 59.703 45.455 0.00 0.00 0.00 2.69
5087 5973 2.037527 AGGTGGAGGGGTCTCGTC 59.962 66.667 0.00 0.00 40.85 4.20
5207 6093 2.668550 AACACCTTCGCCTTCGGC 60.669 61.111 0.00 0.00 46.75 5.54
5280 6166 0.246635 CGACCTGGTGAACTGGGTAG 59.753 60.000 2.82 0.00 42.13 3.18
5289 6175 3.434596 GGTGAACTGGGTAGGTGTTCTTT 60.435 47.826 0.00 0.00 40.27 2.52
5300 6186 5.412904 GGTAGGTGTTCTTTCCTGAATCAAG 59.587 44.000 0.00 0.00 35.51 3.02
5359 6245 5.642063 ACCACACAACTATGGAACTAAATCG 59.358 40.000 0.00 0.00 39.46 3.34
5393 6285 6.403333 TTCATTTCTCCGACAAGTATTTCG 57.597 37.500 0.00 0.00 34.93 3.46
5436 6328 7.133133 TGATTCTTGAGAATGATGGATGAGA 57.867 36.000 10.77 0.00 44.14 3.27
5437 6329 7.746703 TGATTCTTGAGAATGATGGATGAGAT 58.253 34.615 10.77 0.00 44.14 2.75
5438 6330 7.661847 TGATTCTTGAGAATGATGGATGAGATG 59.338 37.037 10.77 0.00 44.14 2.90
5439 6331 6.496144 TCTTGAGAATGATGGATGAGATGT 57.504 37.500 0.00 0.00 0.00 3.06
5470 6362 0.676151 GAGGAAGCACTTGGAGCAGG 60.676 60.000 0.00 0.00 0.00 4.85
5709 6622 1.436195 TTTGCTTCGCTGCTGTCGTT 61.436 50.000 0.00 0.00 0.00 3.85
5718 6631 0.726827 CTGCTGTCGTTTGTGTGTGT 59.273 50.000 0.00 0.00 0.00 3.72
5719 6632 0.445829 TGCTGTCGTTTGTGTGTGTG 59.554 50.000 0.00 0.00 0.00 3.82
5720 6633 0.446222 GCTGTCGTTTGTGTGTGTGT 59.554 50.000 0.00 0.00 0.00 3.72
5773 6686 7.919091 TCGTGTGTTCATAACTTCATATAGACC 59.081 37.037 0.00 0.00 0.00 3.85
5782 6695 1.332195 TCATATAGACCGCAGCTGCT 58.668 50.000 34.22 18.86 39.32 4.24
5801 6715 5.731686 GCTGCTCAGTGATTAATTTGCCTAC 60.732 44.000 0.00 0.00 0.00 3.18
5829 6743 7.325694 ACAAGATTGATTTTTGATCCATGTCC 58.674 34.615 0.00 0.00 0.00 4.02
5842 6756 0.110056 CATGTCCACAAGAACAGCGC 60.110 55.000 0.00 0.00 0.00 5.92
5874 6788 1.344763 AGCAGTTGGTAGTCTCGCTTT 59.655 47.619 0.00 0.00 0.00 3.51
5875 6789 2.143925 GCAGTTGGTAGTCTCGCTTTT 58.856 47.619 0.00 0.00 0.00 2.27
5902 6816 3.570912 TTTTTCGTCCCACCTTCTCTT 57.429 42.857 0.00 0.00 0.00 2.85
5903 6817 2.833631 TTTCGTCCCACCTTCTCTTC 57.166 50.000 0.00 0.00 0.00 2.87
5904 6818 2.011122 TTCGTCCCACCTTCTCTTCT 57.989 50.000 0.00 0.00 0.00 2.85
5905 6819 1.546961 TCGTCCCACCTTCTCTTCTC 58.453 55.000 0.00 0.00 0.00 2.87
5909 6823 0.908198 CCCACCTTCTCTTCTCTGGG 59.092 60.000 0.00 0.00 32.62 4.45
6085 7028 1.196808 CACGACAAAACCAATCCCTCG 59.803 52.381 0.00 0.00 0.00 4.63
6632 7607 2.549754 CTCGCGCCATGAGGAAAATATT 59.450 45.455 0.00 0.00 36.89 1.28
6633 7608 2.548057 TCGCGCCATGAGGAAAATATTC 59.452 45.455 0.00 0.00 36.89 1.75
6644 7619 2.490991 GAAAATATTCCCTCCGTCCGG 58.509 52.381 0.00 0.00 0.00 5.14
6645 7620 1.797320 AAATATTCCCTCCGTCCGGA 58.203 50.000 0.00 0.00 42.90 5.14
6646 7621 1.797320 AATATTCCCTCCGTCCGGAA 58.203 50.000 5.23 0.00 44.66 4.30
6647 7622 1.797320 ATATTCCCTCCGTCCGGAAA 58.203 50.000 5.23 1.92 44.66 3.13
6648 7623 1.797320 TATTCCCTCCGTCCGGAAAT 58.203 50.000 5.23 9.21 44.66 2.17
6649 7624 1.797320 ATTCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
6650 7625 0.826062 TTCCCTCCGTCCGGAAATAC 59.174 55.000 5.23 0.00 44.66 1.89
6651 7626 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
6652 7627 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
6653 7628 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
6654 7629 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
6655 7630 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
6656 7631 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
6657 7632 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
6658 7633 2.331194 CGTCCGGAAATACTTGTCGTT 58.669 47.619 5.23 0.00 0.00 3.85
6659 7634 3.500982 CGTCCGGAAATACTTGTCGTTA 58.499 45.455 5.23 0.00 0.00 3.18
6660 7635 3.919804 CGTCCGGAAATACTTGTCGTTAA 59.080 43.478 5.23 0.00 0.00 2.01
6661 7636 4.385447 CGTCCGGAAATACTTGTCGTTAAA 59.615 41.667 5.23 0.00 0.00 1.52
6662 7637 5.107530 CGTCCGGAAATACTTGTCGTTAAAA 60.108 40.000 5.23 0.00 0.00 1.52
6663 7638 6.401367 CGTCCGGAAATACTTGTCGTTAAAAT 60.401 38.462 5.23 0.00 0.00 1.82
6664 7639 6.739550 GTCCGGAAATACTTGTCGTTAAAATG 59.260 38.462 5.23 0.00 0.00 2.32
6665 7640 6.025280 CCGGAAATACTTGTCGTTAAAATGG 58.975 40.000 0.00 0.00 0.00 3.16
6666 7641 6.128227 CCGGAAATACTTGTCGTTAAAATGGA 60.128 38.462 0.00 0.00 0.00 3.41
6667 7642 7.414762 CCGGAAATACTTGTCGTTAAAATGGAT 60.415 37.037 0.00 0.00 0.00 3.41
6668 7643 8.605746 CGGAAATACTTGTCGTTAAAATGGATA 58.394 33.333 0.00 0.00 0.00 2.59
6669 7644 9.712359 GGAAATACTTGTCGTTAAAATGGATAC 57.288 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.734855 AAGTTACGCGAATGCTGAATATT 57.265 34.783 15.93 0.00 39.65 1.28
1 2 5.523916 AGAAAGTTACGCGAATGCTGAATAT 59.476 36.000 15.93 0.00 39.65 1.28
3 4 3.684788 AGAAAGTTACGCGAATGCTGAAT 59.315 39.130 15.93 0.00 39.65 2.57
5 6 2.683968 AGAAAGTTACGCGAATGCTGA 58.316 42.857 15.93 0.00 39.65 4.26
6 7 3.455619 AAGAAAGTTACGCGAATGCTG 57.544 42.857 15.93 0.00 39.65 4.41
7 8 5.796350 ATTAAGAAAGTTACGCGAATGCT 57.204 34.783 15.93 1.81 39.65 3.79
8 9 6.623743 CACTATTAAGAAAGTTACGCGAATGC 59.376 38.462 15.93 0.00 37.91 3.56
9 10 7.117454 CCACTATTAAGAAAGTTACGCGAATG 58.883 38.462 15.93 0.00 0.00 2.67
10 11 6.257193 CCCACTATTAAGAAAGTTACGCGAAT 59.743 38.462 15.93 0.00 0.00 3.34
11 12 5.577945 CCCACTATTAAGAAAGTTACGCGAA 59.422 40.000 15.93 0.00 0.00 4.70
12 13 5.104374 CCCACTATTAAGAAAGTTACGCGA 58.896 41.667 15.93 0.00 0.00 5.87
48 49 3.157932 TGACGCAAAAACCTTTGGAAG 57.842 42.857 0.23 0.00 41.96 3.46
49 50 3.810310 ATGACGCAAAAACCTTTGGAA 57.190 38.095 0.23 0.00 41.96 3.53
51 52 4.143137 GCATAATGACGCAAAAACCTTTGG 60.143 41.667 0.23 0.00 41.96 3.28
71 72 4.881273 TGATTGGCTGATTTTACTACGCAT 59.119 37.500 0.00 0.00 0.00 4.73
72 73 4.257731 TGATTGGCTGATTTTACTACGCA 58.742 39.130 0.00 0.00 0.00 5.24
73 74 4.875544 TGATTGGCTGATTTTACTACGC 57.124 40.909 0.00 0.00 0.00 4.42
74 75 7.587757 GCTATTTGATTGGCTGATTTTACTACG 59.412 37.037 0.00 0.00 0.00 3.51
75 76 8.405531 TGCTATTTGATTGGCTGATTTTACTAC 58.594 33.333 0.00 0.00 0.00 2.73
76 77 8.518430 TGCTATTTGATTGGCTGATTTTACTA 57.482 30.769 0.00 0.00 0.00 1.82
84 86 3.765511 AGCTTTGCTATTTGATTGGCTGA 59.234 39.130 0.00 0.00 36.99 4.26
101 103 1.674962 CGACTAGCCGTACCTAGCTTT 59.325 52.381 5.16 0.00 40.56 3.51
103 105 1.165284 GCGACTAGCCGTACCTAGCT 61.165 60.000 0.00 5.71 43.20 3.32
120 126 1.028905 TCTTGGGTTGTTTCCTTGCG 58.971 50.000 0.00 0.00 0.00 4.85
184 190 5.294306 ACCACGACATGTAAATCTGCATAAG 59.706 40.000 0.00 0.00 0.00 1.73
185 191 5.182487 ACCACGACATGTAAATCTGCATAA 58.818 37.500 0.00 0.00 0.00 1.90
186 192 4.765273 ACCACGACATGTAAATCTGCATA 58.235 39.130 0.00 0.00 0.00 3.14
187 193 3.609853 ACCACGACATGTAAATCTGCAT 58.390 40.909 0.00 0.00 0.00 3.96
190 196 3.865745 GGAGACCACGACATGTAAATCTG 59.134 47.826 0.00 0.00 0.00 2.90
243 254 0.981277 CGCTCCTCCCCTCCCTAAAA 60.981 60.000 0.00 0.00 0.00 1.52
244 255 1.382695 CGCTCCTCCCCTCCCTAAA 60.383 63.158 0.00 0.00 0.00 1.85
322 356 7.608153 TCTGAAGTTCAAGTTTATCCGTATGA 58.392 34.615 7.06 0.00 0.00 2.15
338 373 3.324993 CTTCACCAGAGCTCTGAAGTTC 58.675 50.000 39.34 0.66 46.59 3.01
344 379 2.418471 CCTAAGCTTCACCAGAGCTCTG 60.418 54.545 32.84 32.84 43.40 3.35
438 508 3.057736 AAGTACCACGTACTGCTGTACAG 60.058 47.826 27.05 18.93 46.96 2.74
439 509 2.507484 AGTACCACGTACTGCTGTACA 58.493 47.619 27.05 9.93 46.06 2.90
446 516 1.467035 GCTCGGAAGTACCACGTACTG 60.467 57.143 5.27 0.00 46.96 2.74
473 543 3.053831 AGATTCAACTTGTACCGGGTG 57.946 47.619 10.66 0.00 0.00 4.61
523 620 2.103042 AGCAACGCTCCGCAATCTC 61.103 57.895 0.00 0.00 30.62 2.75
542 639 2.203001 TGCACCACTCCACACACG 60.203 61.111 0.00 0.00 0.00 4.49
556 661 1.441515 GTACGAGTTCGAGCGTGCA 60.442 57.895 16.76 0.00 41.64 4.57
562 667 1.695893 TACGCCCGTACGAGTTCGAG 61.696 60.000 18.76 2.89 43.02 4.04
610 761 0.546598 ACTTAGCCACCCCTACATGC 59.453 55.000 0.00 0.00 0.00 4.06
644 813 9.890629 AGCAACAAGTAAGTAATATGAATCAGA 57.109 29.630 0.00 0.00 0.00 3.27
645 814 9.926751 CAGCAACAAGTAAGTAATATGAATCAG 57.073 33.333 0.00 0.00 0.00 2.90
646 815 9.665719 TCAGCAACAAGTAAGTAATATGAATCA 57.334 29.630 0.00 0.00 0.00 2.57
650 819 9.278978 TGTTTCAGCAACAAGTAAGTAATATGA 57.721 29.630 0.00 0.00 42.76 2.15
652 821 9.502091 TCTGTTTCAGCAACAAGTAAGTAATAT 57.498 29.630 0.00 0.00 45.11 1.28
653 822 8.896320 TCTGTTTCAGCAACAAGTAAGTAATA 57.104 30.769 0.00 0.00 45.11 0.98
654 823 7.801716 TCTGTTTCAGCAACAAGTAAGTAAT 57.198 32.000 0.00 0.00 45.11 1.89
655 824 7.639039 CATCTGTTTCAGCAACAAGTAAGTAA 58.361 34.615 0.00 0.00 45.11 2.24
656 825 6.293407 GCATCTGTTTCAGCAACAAGTAAGTA 60.293 38.462 0.00 0.00 45.11 2.24
657 826 5.506317 GCATCTGTTTCAGCAACAAGTAAGT 60.506 40.000 0.00 0.00 45.11 2.24
659 828 4.337836 TGCATCTGTTTCAGCAACAAGTAA 59.662 37.500 0.00 0.00 45.11 2.24
660 829 3.882288 TGCATCTGTTTCAGCAACAAGTA 59.118 39.130 0.00 0.00 45.11 2.24
662 831 3.358707 TGCATCTGTTTCAGCAACAAG 57.641 42.857 0.00 0.00 45.11 3.16
663 832 3.570975 AGATGCATCTGTTTCAGCAACAA 59.429 39.130 28.21 0.00 45.11 2.83
665 834 3.844577 AGATGCATCTGTTTCAGCAAC 57.155 42.857 28.21 0.00 40.76 4.17
667 836 4.142838 CGTTTAGATGCATCTGTTTCAGCA 60.143 41.667 34.48 12.97 41.73 4.41
669 838 5.536554 ACGTTTAGATGCATCTGTTTCAG 57.463 39.130 34.48 22.48 37.76 3.02
670 839 7.609760 AATACGTTTAGATGCATCTGTTTCA 57.390 32.000 34.48 15.16 37.76 2.69
672 841 8.039603 TGAAATACGTTTAGATGCATCTGTTT 57.960 30.769 34.48 19.39 37.76 2.83
674 843 6.818644 ACTGAAATACGTTTAGATGCATCTGT 59.181 34.615 34.48 25.73 37.76 3.41
675 844 7.121911 CACTGAAATACGTTTAGATGCATCTG 58.878 38.462 34.48 21.83 37.76 2.90
676 845 6.238211 GCACTGAAATACGTTTAGATGCATCT 60.238 38.462 30.85 30.85 40.86 2.90
677 846 5.904080 GCACTGAAATACGTTTAGATGCATC 59.096 40.000 19.37 19.37 32.63 3.91
678 847 5.586243 AGCACTGAAATACGTTTAGATGCAT 59.414 36.000 0.00 0.00 33.79 3.96
679 848 4.935205 AGCACTGAAATACGTTTAGATGCA 59.065 37.500 0.00 0.00 33.79 3.96
680 849 5.470845 AGCACTGAAATACGTTTAGATGC 57.529 39.130 0.00 0.00 32.57 3.91
681 850 7.987268 TCTAGCACTGAAATACGTTTAGATG 57.013 36.000 0.00 0.00 0.00 2.90
688 857 9.015367 ACAGATATATCTAGCACTGAAATACGT 57.985 33.333 14.92 0.00 34.85 3.57
694 863 8.860088 TGCTTAACAGATATATCTAGCACTGAA 58.140 33.333 24.51 9.63 38.91 3.02
695 864 8.409358 TGCTTAACAGATATATCTAGCACTGA 57.591 34.615 24.51 9.91 38.91 3.41
696 865 8.920665 GTTGCTTAACAGATATATCTAGCACTG 58.079 37.037 26.69 13.91 41.72 3.66
697 866 8.091449 GGTTGCTTAACAGATATATCTAGCACT 58.909 37.037 26.69 10.29 41.72 4.40
700 869 8.833231 TTGGTTGCTTAACAGATATATCTAGC 57.167 34.615 21.08 21.08 36.06 3.42
709 878 8.995027 TCCATATTATTGGTTGCTTAACAGAT 57.005 30.769 0.00 0.00 38.01 2.90
710 879 8.995027 ATCCATATTATTGGTTGCTTAACAGA 57.005 30.769 0.00 0.00 38.01 3.41
711 880 8.017373 CGATCCATATTATTGGTTGCTTAACAG 58.983 37.037 0.00 0.00 38.01 3.16
712 881 7.040755 CCGATCCATATTATTGGTTGCTTAACA 60.041 37.037 0.00 0.00 38.01 2.41
713 882 7.174253 TCCGATCCATATTATTGGTTGCTTAAC 59.826 37.037 0.00 0.00 38.01 2.01
715 884 6.774673 TCCGATCCATATTATTGGTTGCTTA 58.225 36.000 0.00 0.00 38.01 3.09
716 885 5.630121 TCCGATCCATATTATTGGTTGCTT 58.370 37.500 0.00 0.00 38.01 3.91
717 886 5.013079 TCTCCGATCCATATTATTGGTTGCT 59.987 40.000 0.00 0.00 38.01 3.91
718 887 5.245531 TCTCCGATCCATATTATTGGTTGC 58.754 41.667 0.00 0.00 38.01 4.17
719 888 7.445402 ACTTTCTCCGATCCATATTATTGGTTG 59.555 37.037 0.00 0.00 38.01 3.77
720 889 7.518188 ACTTTCTCCGATCCATATTATTGGTT 58.482 34.615 0.00 0.00 38.01 3.67
721 890 7.079451 ACTTTCTCCGATCCATATTATTGGT 57.921 36.000 0.00 0.00 38.01 3.67
744 913 9.264719 ACCACCGCTTACATTAATTAACTATAC 57.735 33.333 0.00 0.00 0.00 1.47
747 916 8.452534 CAAACCACCGCTTACATTAATTAACTA 58.547 33.333 0.00 0.00 0.00 2.24
762 1129 0.973496 AACCAAACCAAACCACCGCT 60.973 50.000 0.00 0.00 0.00 5.52
795 1163 0.460109 TATCACGCTCGCACAAGCAT 60.460 50.000 3.94 0.00 42.62 3.79
796 1164 1.078201 CTATCACGCTCGCACAAGCA 61.078 55.000 3.94 0.00 42.62 3.91
797 1165 1.633171 CTATCACGCTCGCACAAGC 59.367 57.895 0.00 0.00 38.97 4.01
817 1185 1.142465 AGCAGTGATGATGGCCTAAGG 59.858 52.381 3.32 0.00 0.00 2.69
818 1186 2.617308 CAAGCAGTGATGATGGCCTAAG 59.383 50.000 3.32 0.00 0.00 2.18
819 1187 2.646930 CAAGCAGTGATGATGGCCTAA 58.353 47.619 3.32 0.00 0.00 2.69
870 1238 3.452990 GGAGTAGAAGAAGAAGAAGGGGG 59.547 52.174 0.00 0.00 0.00 5.40
910 1294 1.109920 TCATCTCTAGAGCCCCGTGC 61.110 60.000 15.35 0.00 41.71 5.34
920 1304 5.562506 TTTCACGTGGTAGTCATCTCTAG 57.437 43.478 17.00 0.00 0.00 2.43
931 1339 2.215196 GCCTGTTCTTTTCACGTGGTA 58.785 47.619 17.00 0.93 0.00 3.25
933 1341 0.310854 GGCCTGTTCTTTTCACGTGG 59.689 55.000 17.00 0.00 0.00 4.94
934 1342 0.310854 GGGCCTGTTCTTTTCACGTG 59.689 55.000 9.94 9.94 0.00 4.49
935 1343 0.182775 AGGGCCTGTTCTTTTCACGT 59.817 50.000 4.50 0.00 0.00 4.49
936 1344 0.875059 GAGGGCCTGTTCTTTTCACG 59.125 55.000 12.95 0.00 0.00 4.35
937 1345 1.202940 AGGAGGGCCTGTTCTTTTCAC 60.203 52.381 12.95 0.00 44.90 3.18
938 1346 1.149101 AGGAGGGCCTGTTCTTTTCA 58.851 50.000 12.95 0.00 44.90 2.69
961 1369 2.636830 TGCTTTTCCTAGAGCAGATGC 58.363 47.619 0.00 0.00 43.46 3.91
966 1374 2.561419 ACGTAGTGCTTTTCCTAGAGCA 59.439 45.455 0.00 0.00 45.91 4.26
967 1375 3.233684 ACGTAGTGCTTTTCCTAGAGC 57.766 47.619 0.00 0.00 42.51 4.09
1136 1559 7.228308 CAGAAGAAAATATAAGAGAGCCAAGGG 59.772 40.741 0.00 0.00 0.00 3.95
1142 1565 9.715123 GAAAAGCAGAAGAAAATATAAGAGAGC 57.285 33.333 0.00 0.00 0.00 4.09
1146 1569 9.793252 GCATGAAAAGCAGAAGAAAATATAAGA 57.207 29.630 0.00 0.00 0.00 2.10
1149 1572 7.697710 CACGCATGAAAAGCAGAAGAAAATATA 59.302 33.333 0.00 0.00 0.00 0.86
1150 1573 6.529125 CACGCATGAAAAGCAGAAGAAAATAT 59.471 34.615 0.00 0.00 0.00 1.28
1151 1574 5.858049 CACGCATGAAAAGCAGAAGAAAATA 59.142 36.000 0.00 0.00 0.00 1.40
1152 1575 4.682860 CACGCATGAAAAGCAGAAGAAAAT 59.317 37.500 0.00 0.00 0.00 1.82
1159 1582 2.221169 AGAACACGCATGAAAAGCAGA 58.779 42.857 0.00 0.00 0.00 4.26
1169 1592 0.250467 AGCCACTGAAGAACACGCAT 60.250 50.000 0.00 0.00 0.00 4.73
1283 1710 1.609320 GGTGTTCCAGTTGGAGAGCTC 60.609 57.143 5.27 5.27 46.36 4.09
1301 1728 2.264794 GTGATCCGGTTCGCTGGT 59.735 61.111 17.07 0.00 44.13 4.00
1385 1812 8.238631 TGGCGTAACAAAAAGAGGAATTAATAC 58.761 33.333 0.00 0.00 0.00 1.89
1388 1815 6.263617 AGTGGCGTAACAAAAAGAGGAATTAA 59.736 34.615 0.00 0.00 0.00 1.40
1391 1818 4.142038 AGTGGCGTAACAAAAAGAGGAAT 58.858 39.130 0.00 0.00 0.00 3.01
1393 1820 3.202829 AGTGGCGTAACAAAAAGAGGA 57.797 42.857 0.00 0.00 0.00 3.71
1397 1824 4.610680 GCAGACTAGTGGCGTAACAAAAAG 60.611 45.833 0.00 0.00 0.00 2.27
1398 1825 3.249080 GCAGACTAGTGGCGTAACAAAAA 59.751 43.478 0.00 0.00 0.00 1.94
1411 1858 3.369261 CCTTCATCTTGCAGCAGACTAGT 60.369 47.826 0.00 0.00 0.00 2.57
1412 1859 3.118847 TCCTTCATCTTGCAGCAGACTAG 60.119 47.826 0.00 0.00 0.00 2.57
1421 1868 0.107993 CTCGGCTCCTTCATCTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
1440 1887 2.127232 GCTCAAGAAACGGCGCAC 60.127 61.111 10.83 0.00 0.00 5.34
1444 1891 1.129437 GAGACATGCTCAAGAAACGGC 59.871 52.381 10.95 0.00 43.38 5.68
1451 1898 1.370609 CAGCCAGAGACATGCTCAAG 58.629 55.000 16.20 9.62 46.45 3.02
1454 1901 1.818785 GGCAGCCAGAGACATGCTC 60.819 63.158 6.55 8.56 44.29 4.26
1460 1907 0.392327 GAGAAAGGGCAGCCAGAGAC 60.392 60.000 15.19 0.08 0.00 3.36
1465 1912 1.073722 CACAGAGAAAGGGCAGCCA 59.926 57.895 15.19 0.00 0.00 4.75
1469 1916 0.183492 ACAAGCACAGAGAAAGGGCA 59.817 50.000 0.00 0.00 0.00 5.36
1470 1917 1.268079 GAACAAGCACAGAGAAAGGGC 59.732 52.381 0.00 0.00 0.00 5.19
1471 1918 1.532868 CGAACAAGCACAGAGAAAGGG 59.467 52.381 0.00 0.00 0.00 3.95
1472 1919 2.221981 GTCGAACAAGCACAGAGAAAGG 59.778 50.000 0.00 0.00 0.00 3.11
1473 1920 3.126831 AGTCGAACAAGCACAGAGAAAG 58.873 45.455 0.00 0.00 0.00 2.62
1478 1925 2.890808 AAGAGTCGAACAAGCACAGA 57.109 45.000 0.00 0.00 0.00 3.41
1480 1927 2.866156 CTGAAAGAGTCGAACAAGCACA 59.134 45.455 0.00 0.00 34.07 4.57
1481 1928 3.123804 TCTGAAAGAGTCGAACAAGCAC 58.876 45.455 0.00 0.00 38.67 4.40
1482 1929 3.452755 TCTGAAAGAGTCGAACAAGCA 57.547 42.857 0.00 0.00 38.67 3.91
1542 2005 3.895232 TGTTCCATTGGACTAGAGAGC 57.105 47.619 4.45 0.00 0.00 4.09
1548 2011 2.092646 CCCGGATTGTTCCATTGGACTA 60.093 50.000 0.73 0.00 42.74 2.59
1550 2013 1.102978 CCCGGATTGTTCCATTGGAC 58.897 55.000 0.73 1.74 42.74 4.02
1588 2057 2.853542 TCCTGCTGTTGGCCCAGA 60.854 61.111 12.73 0.00 40.92 3.86
1590 2059 3.496309 CTGTCCTGCTGTTGGCCCA 62.496 63.158 0.00 0.00 40.92 5.36
1606 2075 3.438087 AGAACTTTGGACGCATCATTCTG 59.562 43.478 0.00 0.00 0.00 3.02
1617 2086 5.069119 ACTTTTCCATGGAAGAACTTTGGAC 59.931 40.000 25.69 0.00 36.25 4.02
1619 2088 5.302823 AGACTTTTCCATGGAAGAACTTTGG 59.697 40.000 25.69 11.83 35.38 3.28
1620 2089 6.396829 AGACTTTTCCATGGAAGAACTTTG 57.603 37.500 25.69 12.49 35.38 2.77
1621 2090 5.536538 GGAGACTTTTCCATGGAAGAACTTT 59.463 40.000 25.69 12.21 37.20 2.66
1622 2091 5.073428 GGAGACTTTTCCATGGAAGAACTT 58.927 41.667 25.69 13.69 37.20 2.66
1623 2092 4.657013 GGAGACTTTTCCATGGAAGAACT 58.343 43.478 25.69 21.19 37.20 3.01
1624 2093 3.437049 CGGAGACTTTTCCATGGAAGAAC 59.563 47.826 25.69 17.47 37.05 3.01
1734 2211 5.510861 GGTCAGTTTTCTGTAGGTGCTTCTA 60.511 44.000 0.00 0.00 46.98 2.10
1808 2291 7.278424 ACACTTGGATTTGAAGATTGTTTTGTG 59.722 33.333 0.00 0.00 0.00 3.33
1810 2293 7.775397 ACACTTGGATTTGAAGATTGTTTTG 57.225 32.000 0.00 0.00 0.00 2.44
1814 2297 6.469782 ACAACACTTGGATTTGAAGATTGT 57.530 33.333 0.00 0.00 32.92 2.71
1815 2298 7.775397 AAACAACACTTGGATTTGAAGATTG 57.225 32.000 0.00 0.00 34.12 2.67
1839 2322 6.154363 ACACTTGGATTTTCCTCACAGAAAAA 59.846 34.615 3.79 0.00 45.94 1.94
1840 2323 5.656416 ACACTTGGATTTTCCTCACAGAAAA 59.344 36.000 2.27 2.27 46.63 2.29
1841 2324 5.200483 ACACTTGGATTTTCCTCACAGAAA 58.800 37.500 0.00 0.00 37.46 2.52
1842 2325 4.792068 ACACTTGGATTTTCCTCACAGAA 58.208 39.130 0.00 0.00 37.46 3.02
1843 2326 4.437682 ACACTTGGATTTTCCTCACAGA 57.562 40.909 0.00 0.00 37.46 3.41
1844 2327 4.580167 TCAACACTTGGATTTTCCTCACAG 59.420 41.667 0.00 0.00 37.46 3.66
1845 2328 4.531854 TCAACACTTGGATTTTCCTCACA 58.468 39.130 0.00 0.00 37.46 3.58
1846 2329 5.712152 ATCAACACTTGGATTTTCCTCAC 57.288 39.130 0.00 0.00 37.46 3.51
1847 2330 6.070656 AGAATCAACACTTGGATTTTCCTCA 58.929 36.000 0.00 0.00 37.46 3.86
1848 2331 6.581171 AGAATCAACACTTGGATTTTCCTC 57.419 37.500 0.00 0.00 37.46 3.71
1849 2332 6.983906 AAGAATCAACACTTGGATTTTCCT 57.016 33.333 0.00 0.00 37.46 3.36
1850 2333 8.337532 CAAAAAGAATCAACACTTGGATTTTCC 58.662 33.333 0.00 0.00 34.06 3.13
1851 2334 8.882736 ACAAAAAGAATCAACACTTGGATTTTC 58.117 29.630 0.00 0.00 34.06 2.29
1852 2335 8.667463 CACAAAAAGAATCAACACTTGGATTTT 58.333 29.630 0.00 0.00 34.06 1.82
1853 2336 8.040132 TCACAAAAAGAATCAACACTTGGATTT 58.960 29.630 0.00 0.00 34.06 2.17
1854 2337 7.555087 TCACAAAAAGAATCAACACTTGGATT 58.445 30.769 0.00 0.00 36.49 3.01
1855 2338 7.111247 TCACAAAAAGAATCAACACTTGGAT 57.889 32.000 0.00 0.00 0.00 3.41
1856 2339 6.405731 CCTCACAAAAAGAATCAACACTTGGA 60.406 38.462 0.00 0.00 0.00 3.53
1857 2340 5.750067 CCTCACAAAAAGAATCAACACTTGG 59.250 40.000 0.00 0.00 0.00 3.61
1858 2341 6.563422 TCCTCACAAAAAGAATCAACACTTG 58.437 36.000 0.00 0.00 0.00 3.16
1859 2342 6.773976 TCCTCACAAAAAGAATCAACACTT 57.226 33.333 0.00 0.00 0.00 3.16
1860 2343 6.773976 TTCCTCACAAAAAGAATCAACACT 57.226 33.333 0.00 0.00 0.00 3.55
1861 2344 7.826260 TTTTCCTCACAAAAAGAATCAACAC 57.174 32.000 0.00 0.00 0.00 3.32
1862 2345 7.710475 GGATTTTCCTCACAAAAAGAATCAACA 59.290 33.333 0.00 0.00 32.53 3.33
1863 2346 7.710475 TGGATTTTCCTCACAAAAAGAATCAAC 59.290 33.333 0.00 0.00 37.46 3.18
1864 2347 7.790027 TGGATTTTCCTCACAAAAAGAATCAA 58.210 30.769 0.00 0.00 37.46 2.57
1865 2348 7.358770 TGGATTTTCCTCACAAAAAGAATCA 57.641 32.000 0.00 0.00 37.46 2.57
1866 2349 7.928167 ACTTGGATTTTCCTCACAAAAAGAATC 59.072 33.333 0.00 0.00 37.46 2.52
1867 2350 7.712205 CACTTGGATTTTCCTCACAAAAAGAAT 59.288 33.333 0.00 0.00 37.46 2.40
1868 2351 7.041107 CACTTGGATTTTCCTCACAAAAAGAA 58.959 34.615 0.00 0.00 37.46 2.52
1869 2352 6.154363 ACACTTGGATTTTCCTCACAAAAAGA 59.846 34.615 0.00 0.00 37.46 2.52
1870 2353 6.340522 ACACTTGGATTTTCCTCACAAAAAG 58.659 36.000 0.00 0.00 37.46 2.27
1871 2354 6.293004 ACACTTGGATTTTCCTCACAAAAA 57.707 33.333 0.00 0.00 37.46 1.94
1872 2355 5.930837 ACACTTGGATTTTCCTCACAAAA 57.069 34.783 0.00 0.00 37.46 2.44
1873 2356 5.930837 AACACTTGGATTTTCCTCACAAA 57.069 34.783 0.00 0.00 37.46 2.83
1874 2357 6.126409 AGTAACACTTGGATTTTCCTCACAA 58.874 36.000 0.00 0.00 37.46 3.33
1875 2358 5.690865 AGTAACACTTGGATTTTCCTCACA 58.309 37.500 0.00 0.00 37.46 3.58
1876 2359 6.635030 AAGTAACACTTGGATTTTCCTCAC 57.365 37.500 0.00 0.00 37.00 3.51
1889 2372 6.827586 TTTGACTTTGGACAAGTAACACTT 57.172 33.333 0.00 0.00 39.39 3.16
1890 2373 8.514330 TTATTTGACTTTGGACAAGTAACACT 57.486 30.769 0.00 0.00 30.06 3.55
1891 2374 8.617809 TCTTATTTGACTTTGGACAAGTAACAC 58.382 33.333 0.00 0.00 31.08 3.32
1892 2375 8.740123 TCTTATTTGACTTTGGACAAGTAACA 57.260 30.769 0.00 0.00 31.08 2.41
1900 2383 8.730680 ACACATGTATCTTATTTGACTTTGGAC 58.269 33.333 0.00 0.00 0.00 4.02
1918 2401 5.522824 TGCGTACACAAAACTAACACATGTA 59.477 36.000 0.00 0.00 0.00 2.29
1919 2402 4.333095 TGCGTACACAAAACTAACACATGT 59.667 37.500 0.00 0.00 0.00 3.21
1920 2403 4.838681 TGCGTACACAAAACTAACACATG 58.161 39.130 0.00 0.00 0.00 3.21
1924 2407 3.562141 AGCATGCGTACACAAAACTAACA 59.438 39.130 13.01 0.00 0.00 2.41
1948 2431 3.537580 ACTTTCTTGGTTAACGTGAGCA 58.462 40.909 0.00 0.00 0.00 4.26
1949 2432 4.034742 TGAACTTTCTTGGTTAACGTGAGC 59.965 41.667 0.00 0.00 0.00 4.26
1950 2433 5.728351 TGAACTTTCTTGGTTAACGTGAG 57.272 39.130 0.00 0.00 0.00 3.51
1952 2435 4.201871 TGCTGAACTTTCTTGGTTAACGTG 60.202 41.667 0.00 0.00 0.00 4.49
1953 2436 3.942748 TGCTGAACTTTCTTGGTTAACGT 59.057 39.130 0.00 0.00 0.00 3.99
1964 2448 5.113502 AGTAACTGCAATGCTGAACTTTC 57.886 39.130 18.78 1.50 29.51 2.62
2005 2584 7.646314 ACAATGAGAGAAGAACATCAAGTTTG 58.354 34.615 0.00 0.00 41.51 2.93
2023 2602 9.722056 GACATAAGCCAATTTACTTACAATGAG 57.278 33.333 0.00 0.00 31.51 2.90
2024 2603 8.682710 GGACATAAGCCAATTTACTTACAATGA 58.317 33.333 0.00 0.00 31.51 2.57
2025 2604 7.920682 GGGACATAAGCCAATTTACTTACAATG 59.079 37.037 0.18 0.18 31.51 2.82
2026 2605 7.201785 CGGGACATAAGCCAATTTACTTACAAT 60.202 37.037 0.18 0.00 31.51 2.71
2027 2606 6.094325 CGGGACATAAGCCAATTTACTTACAA 59.906 38.462 0.18 0.00 31.51 2.41
2028 2607 5.587043 CGGGACATAAGCCAATTTACTTACA 59.413 40.000 0.18 0.00 31.51 2.41
2029 2608 5.505159 GCGGGACATAAGCCAATTTACTTAC 60.505 44.000 0.18 0.00 31.51 2.34
2030 2609 4.577283 GCGGGACATAAGCCAATTTACTTA 59.423 41.667 0.62 0.62 33.17 2.24
2031 2610 3.380320 GCGGGACATAAGCCAATTTACTT 59.620 43.478 0.00 0.00 0.00 2.24
2038 2617 1.748879 GCAGCGGGACATAAGCCAA 60.749 57.895 0.00 0.00 0.00 4.52
2041 2620 1.026718 AGTTGCAGCGGGACATAAGC 61.027 55.000 0.00 0.00 0.00 3.09
2047 2626 1.237285 ACAATGAGTTGCAGCGGGAC 61.237 55.000 0.00 0.00 38.96 4.46
2050 2629 1.236616 TGGACAATGAGTTGCAGCGG 61.237 55.000 0.00 0.00 38.96 5.52
2051 2630 0.167470 CTGGACAATGAGTTGCAGCG 59.833 55.000 0.00 0.00 38.96 5.18
2057 2636 2.443255 ACAACTCCCTGGACAATGAGTT 59.557 45.455 8.82 8.82 46.10 3.01
2061 2640 2.566833 TGACAACTCCCTGGACAATG 57.433 50.000 0.00 0.00 0.00 2.82
2063 2642 2.241176 AGTTTGACAACTCCCTGGACAA 59.759 45.455 0.00 0.00 39.15 3.18
2104 2683 0.467384 AGGATCCAATCTCTGGTGCG 59.533 55.000 15.82 0.00 46.51 5.34
2202 2781 3.944087 AGAAGTTCATCAGGCCTGTTAC 58.056 45.455 31.58 22.48 0.00 2.50
2206 2785 1.471684 GCAAGAAGTTCATCAGGCCTG 59.528 52.381 27.87 27.87 0.00 4.85
2344 2924 0.038343 ATGTTTTGCATGTCACCGGC 60.038 50.000 0.00 0.00 36.26 6.13
2380 2967 1.818642 AGTTGATCACAGCTTCTGGC 58.181 50.000 0.00 0.00 34.01 4.85
2486 3081 2.041762 AGCTCAGGAGGGATGGCA 59.958 61.111 0.00 0.00 0.00 4.92
2511 3106 0.185901 AGCTCCTTGAGGTTTGCCAA 59.814 50.000 0.00 0.00 37.04 4.52
2514 3109 1.079503 CGTAGCTCCTTGAGGTTTGC 58.920 55.000 0.70 1.38 40.94 3.68
2632 3227 3.564235 TCATGCATGCTGAAAACAGAC 57.436 42.857 22.25 0.00 0.00 3.51
2657 3252 2.438434 CGGCGCCCTTCCAGAATT 60.438 61.111 23.46 0.00 0.00 2.17
2673 3268 0.523966 AGGAGAAGAGACGTGCTTCG 59.476 55.000 17.28 0.84 44.88 3.79
2775 3370 6.530887 TGTTTCGAAACGATAAACCATATCGA 59.469 34.615 30.05 9.05 46.85 3.59
2781 3376 4.273969 AGCTTGTTTCGAAACGATAAACCA 59.726 37.500 30.05 12.06 41.74 3.67
2809 3404 6.381133 ACATGGTCACTGTATCTTGTCTCATA 59.619 38.462 0.00 0.00 0.00 2.15
2882 3479 9.699703 CAATTTCATATTCATATGCAATGTCCA 57.300 29.630 5.71 0.00 36.94 4.02
2883 3480 9.701098 ACAATTTCATATTCATATGCAATGTCC 57.299 29.630 5.71 0.00 36.94 4.02
2915 3514 1.548269 GTGGACACCCTGAGAGAAGAG 59.452 57.143 0.00 0.00 0.00 2.85
2951 3550 2.949644 AGCTAACTGACACAAACCAACC 59.050 45.455 0.00 0.00 0.00 3.77
3033 3632 4.373156 AGATGTACCTTTGGATATGCCC 57.627 45.455 0.00 0.00 34.97 5.36
3068 3667 6.222038 TCAGATAGACTTAACCGAAATGCT 57.778 37.500 0.00 0.00 0.00 3.79
3076 3675 7.838884 ACAGGTAAGTTCAGATAGACTTAACC 58.161 38.462 7.47 7.03 34.39 2.85
3109 3708 5.068234 ACCATGCTTGATCTGTTCAAATG 57.932 39.130 0.22 4.93 43.64 2.32
3147 3746 2.357637 ACGGTTCCTTGTGTCATTGTTG 59.642 45.455 0.00 0.00 0.00 3.33
3161 3760 1.477685 TTCCCAGTCAGGACGGTTCC 61.478 60.000 8.66 0.00 43.22 3.62
3178 3777 8.826710 TCATTAAAGATTCATCACCGTACATTC 58.173 33.333 0.00 0.00 0.00 2.67
3210 3829 6.294397 GGAATCATGGTGCTGAAAATAGGATC 60.294 42.308 0.00 0.00 0.00 3.36
3262 3890 6.366332 CGTGCTCTTGTAGAATTACAGAAACT 59.634 38.462 0.00 0.00 40.68 2.66
3275 3903 5.035443 GGTAATGTCTACGTGCTCTTGTAG 58.965 45.833 0.00 0.00 39.50 2.74
3302 3930 3.133721 AGAACTGCTGGATGTATCTGTCC 59.866 47.826 0.00 0.00 35.02 4.02
3304 3932 4.029520 AGAGAACTGCTGGATGTATCTGT 58.970 43.478 0.00 0.00 0.00 3.41
3305 3933 4.669206 AGAGAACTGCTGGATGTATCTG 57.331 45.455 0.00 0.00 0.00 2.90
3325 3953 9.906660 TGTTCCTTTAACAAATACTGCAATAAG 57.093 29.630 0.00 0.00 45.11 1.73
3340 4059 4.215613 CCCTAGTGCAGTTGTTCCTTTAAC 59.784 45.833 0.00 0.00 38.67 2.01
3351 4070 1.408822 GCCTAATGCCCTAGTGCAGTT 60.409 52.381 5.28 3.20 45.93 3.16
3496 4222 7.345914 AGCATAGGTCCTACTTTTCTAATGTCT 59.654 37.037 0.00 0.00 0.00 3.41
3505 4231 2.500098 TCGCAGCATAGGTCCTACTTTT 59.500 45.455 0.00 0.00 0.00 2.27
3519 4245 1.589803 CCATGATCTCATTCGCAGCA 58.410 50.000 0.00 0.00 33.61 4.41
3521 4247 2.141517 GTCCCATGATCTCATTCGCAG 58.858 52.381 0.00 0.00 33.61 5.18
3531 4257 2.065799 ACCCCAATAGGTCCCATGATC 58.934 52.381 0.00 0.00 33.81 2.92
3547 4273 4.681512 CGTAACTAACATTCCCACTACCCC 60.682 50.000 0.00 0.00 0.00 4.95
3641 4367 5.254032 AGATCAAACTAAGGGACAAAGGGAT 59.746 40.000 0.00 0.00 0.00 3.85
3684 4410 4.879545 ACATGGATACGTTGGACAAATACC 59.120 41.667 0.00 0.00 42.51 2.73
3687 4413 5.975693 AAACATGGATACGTTGGACAAAT 57.024 34.783 0.00 0.00 42.51 2.32
3689 4415 5.278561 GGAAAAACATGGATACGTTGGACAA 60.279 40.000 0.00 0.00 42.51 3.18
3691 4417 4.216687 TGGAAAAACATGGATACGTTGGAC 59.783 41.667 0.00 0.00 42.51 4.02
3692 4418 4.399219 TGGAAAAACATGGATACGTTGGA 58.601 39.130 0.00 0.00 42.51 3.53
3693 4419 4.775058 TGGAAAAACATGGATACGTTGG 57.225 40.909 0.00 0.00 42.51 3.77
3694 4420 5.768317 ACTTGGAAAAACATGGATACGTTG 58.232 37.500 0.00 0.00 42.51 4.10
3695 4421 7.696992 ATACTTGGAAAAACATGGATACGTT 57.303 32.000 0.00 0.00 42.51 3.99
3697 4423 7.757526 TGAATACTTGGAAAAACATGGATACG 58.242 34.615 0.00 0.00 42.51 3.06
3741 4467 2.728180 CCGCAGCGCTGAGGTATA 59.272 61.111 41.52 0.00 44.14 1.47
3770 4496 3.253188 TGCTAAAATGCACAGGTCAGTTC 59.747 43.478 0.00 0.00 38.12 3.01
3857 4583 9.982651 GTAAGTCTAAGCAATCCAGTATGATTA 57.017 33.333 0.00 0.00 39.69 1.75
3894 4764 7.814587 ACTGCTCAGAAAAATTAAATTACAGGC 59.185 33.333 3.60 0.00 0.00 4.85
3961 4833 0.040058 ATTGTCCTTGCCTGCATCCA 59.960 50.000 0.00 0.00 0.00 3.41
3974 4846 5.949735 CCAATACTGGTGTTGTTATTGTCC 58.050 41.667 8.83 0.00 38.00 4.02
4058 4930 2.411904 GAGAGCACTGAAACTCCTGTG 58.588 52.381 0.00 0.00 38.50 3.66
4106 4978 3.118956 ACCTATCTTTGCGTCTTCTGAGG 60.119 47.826 0.00 0.00 0.00 3.86
4161 5033 3.564225 ACGTTGTTTTCCTTCCAGCTTAG 59.436 43.478 0.00 0.00 0.00 2.18
4203 5075 6.875726 TCCAATATTTGTCAGTGAGAAGACAG 59.124 38.462 2.65 0.00 44.65 3.51
4262 5134 1.400846 CAGGTCATCATCTGCACAAGC 59.599 52.381 0.00 0.00 42.57 4.01
4363 5238 0.037605 CCTTGTACACCACCGTCTCC 60.038 60.000 0.00 0.00 0.00 3.71
4430 5305 4.293648 CGTCCAGTGGTGCACCGA 62.294 66.667 30.07 18.44 39.43 4.69
4544 5421 0.472471 TGAGGGTCCAAGACACCAAC 59.528 55.000 0.00 0.00 36.49 3.77
4562 5439 0.036010 CTGGCCACTTCTACCACCTG 60.036 60.000 0.00 0.00 0.00 4.00
4579 5456 2.523015 GCATTTTCGTGGCTCAATCTG 58.477 47.619 0.00 0.00 0.00 2.90
4588 5465 0.958382 TCTTCCCGGCATTTTCGTGG 60.958 55.000 0.00 0.00 0.00 4.94
4597 5474 3.727258 CCCACCATCTTCCCGGCA 61.727 66.667 0.00 0.00 0.00 5.69
4602 5479 1.490490 TGCAGTATCCCACCATCTTCC 59.510 52.381 0.00 0.00 0.00 3.46
4636 5513 3.516615 GAAGACCACCATTCTCGAGAAG 58.483 50.000 29.89 20.59 37.48 2.85
4666 5543 1.226239 GTAGAGCGTCCCGTTCGAC 60.226 63.158 0.00 0.00 41.66 4.20
4667 5544 2.743752 CGTAGAGCGTCCCGTTCGA 61.744 63.158 0.00 0.00 41.66 3.71
4669 5546 3.181367 TCGTAGAGCGTCCCGTTC 58.819 61.111 0.00 0.00 42.13 3.95
4703 5580 2.514803 AGCTTTCAGTACCGCCAAAAT 58.485 42.857 0.00 0.00 0.00 1.82
4711 5588 6.072452 AGCAAGATTACAAAGCTTTCAGTACC 60.072 38.462 9.23 4.79 34.36 3.34
4730 5607 2.555325 CACCTTCTCAAATGCAGCAAGA 59.445 45.455 0.00 0.00 0.00 3.02
4785 5669 0.312102 CTGAGAGCACACGACAGACA 59.688 55.000 0.00 0.00 0.00 3.41
4786 5670 0.593618 TCTGAGAGCACACGACAGAC 59.406 55.000 0.00 0.00 33.57 3.51
4787 5671 1.200948 CATCTGAGAGCACACGACAGA 59.799 52.381 0.00 0.00 40.88 3.41
4788 5672 1.067985 ACATCTGAGAGCACACGACAG 60.068 52.381 0.00 0.00 0.00 3.51
4800 5684 1.625315 TGACACCCTTCCACATCTGAG 59.375 52.381 0.00 0.00 0.00 3.35
4869 5753 1.963338 GGTGTGCAGGTGTCTGAGC 60.963 63.158 0.00 0.00 43.49 4.26
4876 5760 3.046087 CAGCTCGGTGTGCAGGTG 61.046 66.667 0.00 0.00 0.00 4.00
4933 5817 4.260456 CGAGAAGTCTTCCGTCAGATAGAC 60.260 50.000 9.04 0.00 44.02 2.59
4977 5861 1.589716 AAAGACGCCATGCTCCAAGC 61.590 55.000 0.00 0.00 42.82 4.01
4984 5870 2.126346 GCACCAAAGACGCCATGC 60.126 61.111 0.00 0.00 0.00 4.06
5002 5888 5.181690 TGTTTAACATCTTGCTGTCAACC 57.818 39.130 0.00 0.00 0.00 3.77
5025 5911 2.297033 TCAAAACCCATTTCAGCTCAGC 59.703 45.455 0.00 0.00 0.00 4.26
5046 5932 6.577103 TCTCGAAGTCAATTATCTGCAGAAT 58.423 36.000 22.50 7.91 0.00 2.40
5087 5973 2.045926 CTCAGGAGGGGTTTGCCG 60.046 66.667 0.00 0.00 34.97 5.69
5207 6093 0.820226 TCAGCTCCAGGAGAATCACG 59.180 55.000 21.89 1.02 36.25 4.35
5280 6166 5.308825 TCTCTTGATTCAGGAAAGAACACC 58.691 41.667 0.00 0.00 29.93 4.16
5289 6175 4.815533 CCTGAGTTCTCTTGATTCAGGA 57.184 45.455 12.31 0.00 46.40 3.86
5300 6186 3.456280 CTGCTGCTAATCCTGAGTTCTC 58.544 50.000 0.00 0.00 0.00 2.87
5359 6245 9.834628 TTGTCGGAGAAATGAATAAAAATGTAC 57.165 29.630 0.00 0.00 39.69 2.90
5401 6293 7.175933 ATTCTCAAGAATCATGGGTACCCCC 62.176 48.000 28.61 4.75 44.86 5.40
5410 6302 7.661847 TCTCATCCATCATTCTCAAGAATCATG 59.338 37.037 9.03 9.03 41.02 3.07
5436 6328 0.396435 TCCTCGCCTGAAACACACAT 59.604 50.000 0.00 0.00 0.00 3.21
5437 6329 0.179234 TTCCTCGCCTGAAACACACA 59.821 50.000 0.00 0.00 0.00 3.72
5438 6330 0.868406 CTTCCTCGCCTGAAACACAC 59.132 55.000 0.00 0.00 0.00 3.82
5439 6331 0.884704 GCTTCCTCGCCTGAAACACA 60.885 55.000 0.00 0.00 0.00 3.72
5470 6362 3.373565 CTTGCCAAACTCCCCCGC 61.374 66.667 0.00 0.00 0.00 6.13
5709 6622 1.950216 ACACACACAACACACACACAA 59.050 42.857 0.00 0.00 0.00 3.33
5718 6631 1.200252 CCCGTCAAAACACACACAACA 59.800 47.619 0.00 0.00 0.00 3.33
5719 6632 1.902840 CCCGTCAAAACACACACAAC 58.097 50.000 0.00 0.00 0.00 3.32
5720 6633 0.171455 GCCCGTCAAAACACACACAA 59.829 50.000 0.00 0.00 0.00 3.33
5782 6695 7.517614 TGTTTGTAGGCAAATTAATCACTGA 57.482 32.000 0.00 0.00 45.11 3.41
5801 6715 8.995220 ACATGGATCAAAAATCAATCTTGTTTG 58.005 29.630 0.00 0.00 0.00 2.93
5805 6719 7.277098 GTGGACATGGATCAAAAATCAATCTTG 59.723 37.037 0.00 0.00 0.00 3.02
5813 6727 6.041865 TGTTCTTGTGGACATGGATCAAAAAT 59.958 34.615 0.00 0.00 0.00 1.82
5829 6743 1.081892 ATGCTAGCGCTGTTCTTGTG 58.918 50.000 22.90 0.86 36.97 3.33
5842 6756 3.813443 ACCAACTGCTCCATTATGCTAG 58.187 45.455 0.00 0.00 0.00 3.42
6085 7028 4.838486 CGTGCTCTCCCTCGACGC 62.838 72.222 0.00 0.00 0.00 5.19
6263 7237 3.151022 CTCCTCGCACTCCTCCCC 61.151 72.222 0.00 0.00 0.00 4.81
6632 7607 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
6633 7608 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
6634 7609 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
6635 7610 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
6636 7611 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
6637 7612 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
6638 7613 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
6639 7614 5.844301 TTTAACGACAAGTATTTCCGGAC 57.156 39.130 1.83 0.00 0.00 4.79
6640 7615 6.128227 CCATTTTAACGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 0.00 5.14
6641 7616 6.025280 CCATTTTAACGACAAGTATTTCCGG 58.975 40.000 0.00 0.00 0.00 5.14
6642 7617 6.833839 TCCATTTTAACGACAAGTATTTCCG 58.166 36.000 0.00 0.00 0.00 4.30
6643 7618 9.712359 GTATCCATTTTAACGACAAGTATTTCC 57.288 33.333 0.00 0.00 0.00 3.13
6649 7624 8.026607 CCATTTGTATCCATTTTAACGACAAGT 58.973 33.333 0.00 0.00 0.00 3.16
6650 7625 7.487829 CCCATTTGTATCCATTTTAACGACAAG 59.512 37.037 0.00 0.00 0.00 3.16
6651 7626 7.039644 ACCCATTTGTATCCATTTTAACGACAA 60.040 33.333 0.00 0.00 0.00 3.18
6652 7627 6.434652 ACCCATTTGTATCCATTTTAACGACA 59.565 34.615 0.00 0.00 0.00 4.35
6653 7628 6.750039 CACCCATTTGTATCCATTTTAACGAC 59.250 38.462 0.00 0.00 0.00 4.34
6654 7629 6.434652 ACACCCATTTGTATCCATTTTAACGA 59.565 34.615 0.00 0.00 0.00 3.85
6655 7630 6.626302 ACACCCATTTGTATCCATTTTAACG 58.374 36.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.