Multiple sequence alignment - TraesCS2A01G368000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G368000 chr2A 100.000 2484 0 0 976 3459 611746974 611744491 0.000000e+00 4588
1 TraesCS2A01G368000 chr2A 100.000 572 0 0 1 572 611747949 611747378 0.000000e+00 1057
2 TraesCS2A01G368000 chr2A 83.159 671 65 26 1699 2353 611315992 611315354 1.390000e-158 569
3 TraesCS2A01G368000 chr2A 89.105 257 14 5 3213 3459 300328813 300328561 1.210000e-79 307
4 TraesCS2A01G368000 chr2A 86.131 274 20 10 3198 3459 628340122 628340389 2.630000e-71 279
5 TraesCS2A01G368000 chr2A 85.878 262 28 6 2902 3159 750146615 750146359 1.580000e-68 270
6 TraesCS2A01G368000 chr2A 93.373 166 8 2 1236 1398 611317093 611316928 3.450000e-60 243
7 TraesCS2A01G368000 chr2A 82.807 285 29 10 2459 2742 750147231 750146966 1.600000e-58 237
8 TraesCS2A01G368000 chr2A 83.333 132 17 5 1467 1596 611316152 611316024 2.180000e-22 117
9 TraesCS2A01G368000 chr5A 98.288 701 11 1 2459 3159 58559291 58559990 0.000000e+00 1227
10 TraesCS2A01G368000 chr5A 98.006 702 13 1 2459 3159 58530715 58531416 0.000000e+00 1218
11 TraesCS2A01G368000 chr5A 89.015 264 16 5 3207 3459 374578338 374578077 7.210000e-82 315
12 TraesCS2A01G368000 chr5A 86.038 265 29 7 3202 3459 54259618 54259881 9.450000e-71 278
13 TraesCS2A01G368000 chr2B 90.942 817 42 9 1652 2464 548911654 548910866 0.000000e+00 1070
14 TraesCS2A01G368000 chr2B 91.108 641 32 12 994 1622 548912278 548911651 0.000000e+00 845
15 TraesCS2A01G368000 chr2B 82.725 712 72 32 1656 2352 548662041 548661366 1.380000e-163 586
16 TraesCS2A01G368000 chr2B 83.824 408 36 15 2 404 548913649 548913267 9.130000e-96 361
17 TraesCS2A01G368000 chr2B 93.976 166 7 1 1236 1398 548662875 548662710 7.410000e-62 248
18 TraesCS2A01G368000 chr2B 77.534 365 66 12 1238 1593 571252619 571252976 4.530000e-49 206
19 TraesCS2A01G368000 chr2B 90.210 143 14 0 996 1138 548663085 548662943 1.640000e-43 187
20 TraesCS2A01G368000 chr2B 81.538 130 23 1 1467 1596 548662199 548662071 4.720000e-19 106
21 TraesCS2A01G368000 chr2D 93.145 744 22 16 1717 2459 470138004 470137289 0.000000e+00 1064
22 TraesCS2A01G368000 chr2D 94.103 407 12 4 996 1398 470058372 470057974 2.950000e-170 608
23 TraesCS2A01G368000 chr2D 87.436 390 19 19 1237 1617 470139818 470139450 4.130000e-114 422
24 TraesCS2A01G368000 chr2D 84.051 395 35 13 193 569 470140409 470140025 4.250000e-94 355
25 TraesCS2A01G368000 chr2D 81.754 422 49 15 1656 2074 470057049 470056653 9.260000e-86 327
26 TraesCS2A01G368000 chr2D 81.733 427 42 16 1656 2074 470043226 470042828 1.200000e-84 324
27 TraesCS2A01G368000 chr2D 92.754 207 9 2 983 1189 470140031 470139831 9.390000e-76 294
28 TraesCS2A01G368000 chr2D 90.686 204 17 2 2151 2353 470042677 470042475 1.580000e-68 270
29 TraesCS2A01G368000 chr2D 90.686 204 17 2 2151 2353 470056489 470056287 1.580000e-68 270
30 TraesCS2A01G368000 chr2D 89.744 195 12 5 74 260 470155066 470154872 3.450000e-60 243
31 TraesCS2A01G368000 chr2D 89.286 140 15 0 999 1138 470044503 470044364 3.550000e-40 176
32 TraesCS2A01G368000 chr2D 95.122 82 3 1 2 83 470156560 470156480 1.010000e-25 128
33 TraesCS2A01G368000 chr2D 83.333 132 17 5 1467 1596 470043384 470043256 2.180000e-22 117
34 TraesCS2A01G368000 chr6A 94.559 533 18 2 2457 2988 14715631 14715109 0.000000e+00 813
35 TraesCS2A01G368000 chr6A 87.549 257 19 4 3213 3459 562249573 562249320 5.650000e-73 285
36 TraesCS2A01G368000 chr7A 98.547 344 5 0 2816 3159 664121987 664121644 2.950000e-170 608
37 TraesCS2A01G368000 chr7A 95.556 315 6 5 2453 2759 664122258 664121944 6.670000e-137 497
38 TraesCS2A01G368000 chr3A 89.268 410 37 5 2754 3159 42744448 42744854 1.110000e-139 507
39 TraesCS2A01G368000 chr3A 86.398 397 34 10 2445 2838 42744184 42744563 1.920000e-112 416
40 TraesCS2A01G368000 chr3B 88.021 384 31 6 2781 3159 458326290 458326663 1.140000e-119 440
41 TraesCS2A01G368000 chr3B 82.974 417 39 14 2456 2871 458326024 458326409 7.110000e-92 348
42 TraesCS2A01G368000 chr7D 89.443 341 18 10 2830 3158 1904193 1904527 6.910000e-112 414
43 TraesCS2A01G368000 chr7D 86.595 373 49 1 2459 2831 88733408 88733037 8.930000e-111 411
44 TraesCS2A01G368000 chr7D 87.027 370 38 8 2793 3159 88733141 88732779 3.210000e-110 409
45 TraesCS2A01G368000 chr7D 86.957 299 30 4 2507 2805 1903980 1904269 9.260000e-86 327
46 TraesCS2A01G368000 chr7D 89.105 257 13 3 3213 3459 102583567 102583316 4.340000e-79 305
47 TraesCS2A01G368000 chr7D 87.549 257 19 5 3213 3459 127483384 127483131 5.650000e-73 285
48 TraesCS2A01G368000 chr3D 88.372 344 25 7 2822 3159 2907610 2907944 1.930000e-107 399
49 TraesCS2A01G368000 chr3D 89.308 318 20 3 2460 2775 2907357 2907662 1.510000e-103 387
50 TraesCS2A01G368000 chr3D 87.938 257 18 4 3213 3459 47776117 47776370 1.210000e-74 291
51 TraesCS2A01G368000 chr5D 89.883 257 13 4 3213 3459 505989610 505989357 5.570000e-83 318
52 TraesCS2A01G368000 chr6B 89.494 257 17 3 3213 3459 30970737 30970481 2.000000e-82 316
53 TraesCS2A01G368000 chr6B 86.617 269 23 6 3201 3459 517440925 517440660 5.650000e-73 285
54 TraesCS2A01G368000 chr6B 86.142 267 23 4 3204 3459 156810271 156810534 3.400000e-70 276
55 TraesCS2A01G368000 chr1D 88.716 257 16 4 3213 3459 300058204 300057951 5.610000e-78 302
56 TraesCS2A01G368000 chrUn 88.327 257 14 4 3213 3459 21280814 21280564 9.390000e-76 294
57 TraesCS2A01G368000 chrUn 87.984 258 18 4 3212 3459 11579598 11579344 3.380000e-75 292


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G368000 chr2A 611744491 611747949 3458 True 2822.500000 4588 100.000000 1 3459 2 chr2A.!!$R3 3458
1 TraesCS2A01G368000 chr2A 611315354 611317093 1739 True 309.666667 569 86.621667 1236 2353 3 chr2A.!!$R2 1117
2 TraesCS2A01G368000 chr2A 750146359 750147231 872 True 253.500000 270 84.342500 2459 3159 2 chr2A.!!$R4 700
3 TraesCS2A01G368000 chr5A 58559291 58559990 699 False 1227.000000 1227 98.288000 2459 3159 1 chr5A.!!$F3 700
4 TraesCS2A01G368000 chr5A 58530715 58531416 701 False 1218.000000 1218 98.006000 2459 3159 1 chr5A.!!$F2 700
5 TraesCS2A01G368000 chr2B 548910866 548913649 2783 True 758.666667 1070 88.624667 2 2464 3 chr2B.!!$R2 2462
6 TraesCS2A01G368000 chr2B 548661366 548663085 1719 True 281.750000 586 87.112250 996 2352 4 chr2B.!!$R1 1356
7 TraesCS2A01G368000 chr2D 470137289 470140409 3120 True 533.750000 1064 89.346500 193 2459 4 chr2D.!!$R3 2266
8 TraesCS2A01G368000 chr2D 470056287 470058372 2085 True 401.666667 608 88.847667 996 2353 3 chr2D.!!$R2 1357
9 TraesCS2A01G368000 chr2D 470042475 470044503 2028 True 221.750000 324 86.259500 999 2353 4 chr2D.!!$R1 1354
10 TraesCS2A01G368000 chr6A 14715109 14715631 522 True 813.000000 813 94.559000 2457 2988 1 chr6A.!!$R1 531
11 TraesCS2A01G368000 chr7A 664121644 664122258 614 True 552.500000 608 97.051500 2453 3159 2 chr7A.!!$R1 706
12 TraesCS2A01G368000 chr3A 42744184 42744854 670 False 461.500000 507 87.833000 2445 3159 2 chr3A.!!$F1 714
13 TraesCS2A01G368000 chr3B 458326024 458326663 639 False 394.000000 440 85.497500 2456 3159 2 chr3B.!!$F1 703
14 TraesCS2A01G368000 chr7D 88732779 88733408 629 True 410.000000 411 86.811000 2459 3159 2 chr7D.!!$R3 700
15 TraesCS2A01G368000 chr7D 1903980 1904527 547 False 370.500000 414 88.200000 2507 3158 2 chr7D.!!$F1 651
16 TraesCS2A01G368000 chr3D 2907357 2907944 587 False 393.000000 399 88.840000 2460 3159 2 chr3D.!!$F2 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 1270 0.250727 TGCACCCTTTTCCTTCCTCG 60.251 55.0 0.0 0.0 0.0 4.63 F
1189 2026 0.106918 ACAGAGGGCGTTGGTTTCAA 60.107 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 2349 0.464452 CCCAGAACCCTACGGATCAC 59.536 60.0 0.0 0.0 33.37 3.06 R
3037 6460 0.175989 GGGAGTAGAAAGCCGTGGAG 59.824 60.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.666317 GGTACATAGCATGGCCCTTTT 58.334 47.619 0.00 0.00 33.60 2.27
79 80 2.623416 GGTACATAGCATGGCCCTTTTC 59.377 50.000 0.00 0.00 33.60 2.29
80 81 1.780503 ACATAGCATGGCCCTTTTCC 58.219 50.000 0.00 0.00 33.60 3.13
81 82 1.288932 ACATAGCATGGCCCTTTTCCT 59.711 47.619 0.00 0.00 33.60 3.36
82 83 2.513738 ACATAGCATGGCCCTTTTCCTA 59.486 45.455 0.00 0.00 33.60 2.94
83 84 3.140895 ACATAGCATGGCCCTTTTCCTAT 59.859 43.478 0.00 0.00 33.60 2.57
84 85 2.854736 AGCATGGCCCTTTTCCTATT 57.145 45.000 0.00 0.00 0.00 1.73
137 139 7.582719 AGATGGATAGAGAGTAACAGAGAACT 58.417 38.462 0.00 0.00 0.00 3.01
139 141 8.918202 ATGGATAGAGAGTAACAGAGAACTAG 57.082 38.462 0.00 0.00 0.00 2.57
175 177 8.754096 CATTTAAAATAGCGCATGCAATTCTTA 58.246 29.630 19.57 11.31 46.23 2.10
176 178 7.912949 TTAAAATAGCGCATGCAATTCTTAG 57.087 32.000 19.57 0.00 46.23 2.18
181 185 4.808558 AGCGCATGCAATTCTTAGAAAAA 58.191 34.783 19.57 0.00 46.23 1.94
203 983 1.002576 CACAAAGTCTCACAATGCGCA 60.003 47.619 14.96 14.96 0.00 6.09
207 987 3.776849 TCTCACAATGCGCACGCG 61.777 61.111 14.90 3.53 45.51 6.01
236 1019 0.739813 CAGAGGCCCTTAACGTTCCG 60.740 60.000 2.82 0.00 0.00 4.30
263 1046 7.806690 TCAAGCAGATTATCCGCAAAATATAC 58.193 34.615 3.13 0.00 0.00 1.47
274 1063 2.704037 CAAAATATACGTGGCACAGCG 58.296 47.619 19.09 6.43 41.80 5.18
298 1087 2.099831 GACGTAGACGGGAGCGTG 59.900 66.667 7.04 0.00 44.95 5.34
326 1118 0.615850 TGGACAATGGGCGTGACATA 59.384 50.000 0.00 0.00 0.00 2.29
327 1119 1.014352 GGACAATGGGCGTGACATAC 58.986 55.000 0.00 0.00 0.00 2.39
328 1120 1.406887 GGACAATGGGCGTGACATACT 60.407 52.381 0.00 0.00 0.00 2.12
329 1121 1.665679 GACAATGGGCGTGACATACTG 59.334 52.381 0.00 0.00 0.00 2.74
330 1122 1.277842 ACAATGGGCGTGACATACTGA 59.722 47.619 0.00 0.00 0.00 3.41
331 1123 1.665679 CAATGGGCGTGACATACTGAC 59.334 52.381 0.00 0.00 0.00 3.51
332 1124 0.901827 ATGGGCGTGACATACTGACA 59.098 50.000 0.00 0.00 0.00 3.58
333 1125 0.901827 TGGGCGTGACATACTGACAT 59.098 50.000 0.00 0.00 0.00 3.06
354 1146 1.359459 GACGGACAAACGGATCCAGC 61.359 60.000 13.41 0.00 38.39 4.85
389 1181 2.358737 AAGCCGCCACGAAGAAGG 60.359 61.111 0.00 0.00 0.00 3.46
405 1197 0.893727 AAGGTTCTCGGCGCCAAATT 60.894 50.000 28.98 8.89 0.00 1.82
445 1237 1.080772 CACTTCCTCGCGTGCAGTA 60.081 57.895 5.77 0.00 0.00 2.74
446 1238 0.666274 CACTTCCTCGCGTGCAGTAA 60.666 55.000 5.77 0.00 0.00 2.24
449 1241 1.529438 CTTCCTCGCGTGCAGTAAAAA 59.471 47.619 5.77 0.00 0.00 1.94
450 1242 0.863144 TCCTCGCGTGCAGTAAAAAC 59.137 50.000 5.77 0.00 0.00 2.43
462 1257 3.305110 CAGTAAAAACAATCGTGCACCC 58.695 45.455 12.15 0.00 0.00 4.61
473 1268 0.537371 CGTGCACCCTTTTCCTTCCT 60.537 55.000 12.15 0.00 0.00 3.36
474 1269 1.248486 GTGCACCCTTTTCCTTCCTC 58.752 55.000 5.22 0.00 0.00 3.71
475 1270 0.250727 TGCACCCTTTTCCTTCCTCG 60.251 55.000 0.00 0.00 0.00 4.63
476 1271 1.587043 GCACCCTTTTCCTTCCTCGC 61.587 60.000 0.00 0.00 0.00 5.03
477 1272 1.003718 ACCCTTTTCCTTCCTCGCG 60.004 57.895 0.00 0.00 0.00 5.87
478 1273 1.003718 CCCTTTTCCTTCCTCGCGT 60.004 57.895 5.77 0.00 0.00 6.01
479 1274 1.298859 CCCTTTTCCTTCCTCGCGTG 61.299 60.000 5.77 2.75 0.00 5.34
481 1276 1.337447 CCTTTTCCTTCCTCGCGTGTA 60.337 52.381 5.77 0.00 0.00 2.90
556 1393 1.906994 TTGCTTTCGATTCCGGTGCG 61.907 55.000 0.00 4.01 36.24 5.34
558 1395 3.420222 CTTTCGATTCCGGTGCGCG 62.420 63.158 0.00 0.00 36.24 6.86
1184 2021 2.111043 CACACAGAGGGCGTTGGT 59.889 61.111 0.00 0.00 0.00 3.67
1185 2022 1.525995 CACACAGAGGGCGTTGGTT 60.526 57.895 0.00 0.00 0.00 3.67
1186 2023 1.101049 CACACAGAGGGCGTTGGTTT 61.101 55.000 0.00 0.00 0.00 3.27
1187 2024 0.818040 ACACAGAGGGCGTTGGTTTC 60.818 55.000 0.00 0.00 0.00 2.78
1188 2025 0.817634 CACAGAGGGCGTTGGTTTCA 60.818 55.000 0.00 0.00 0.00 2.69
1189 2026 0.106918 ACAGAGGGCGTTGGTTTCAA 60.107 50.000 0.00 0.00 0.00 2.69
1231 2071 0.597568 AACCAACACACATGCATCCG 59.402 50.000 0.00 0.00 0.00 4.18
1405 2349 1.134907 ACTTACCGAGGTAACGCATGG 60.135 52.381 10.43 3.45 46.39 3.66
1439 2387 0.744414 CTGGGAATGCGTACCCTGTG 60.744 60.000 12.01 1.42 45.74 3.66
1454 2402 1.732259 CCTGTGCACTTATCCGTTGAC 59.268 52.381 19.41 0.00 0.00 3.18
1598 3319 4.017177 ACCTGTAAGTACAAAAGGAGCC 57.983 45.455 10.62 0.00 35.50 4.70
1607 3328 2.375146 ACAAAAGGAGCCGAAACTTGT 58.625 42.857 0.00 0.00 0.00 3.16
1613 3334 5.585820 AAGGAGCCGAAACTTGTTAAAAA 57.414 34.783 0.00 0.00 0.00 1.94
1614 3335 5.784578 AGGAGCCGAAACTTGTTAAAAAT 57.215 34.783 0.00 0.00 0.00 1.82
1615 3336 6.887626 AGGAGCCGAAACTTGTTAAAAATA 57.112 33.333 0.00 0.00 0.00 1.40
1616 3337 7.462571 AGGAGCCGAAACTTGTTAAAAATAT 57.537 32.000 0.00 0.00 0.00 1.28
1617 3338 8.570068 AGGAGCCGAAACTTGTTAAAAATATA 57.430 30.769 0.00 0.00 0.00 0.86
1618 3339 9.185680 AGGAGCCGAAACTTGTTAAAAATATAT 57.814 29.630 0.00 0.00 0.00 0.86
1643 3364 9.762381 ATATTATTATTCTATCCCCCGCAAAAA 57.238 29.630 0.00 0.00 0.00 1.94
1644 3365 8.664669 ATTATTATTCTATCCCCCGCAAAAAT 57.335 30.769 0.00 0.00 0.00 1.82
1645 3366 9.762381 ATTATTATTCTATCCCCCGCAAAAATA 57.238 29.630 0.00 0.00 0.00 1.40
1646 3367 9.762381 TTATTATTCTATCCCCCGCAAAAATAT 57.238 29.630 0.00 0.00 0.00 1.28
1684 3411 7.671827 ACTCGACATTTTTGTTGTTTAAAAGC 58.328 30.769 0.00 0.00 0.00 3.51
1709 3436 5.178797 TCACCAAAGCTAGCTCTTATTCAC 58.821 41.667 19.65 0.00 0.00 3.18
1815 4922 4.838486 GGCAGCGACTCCTCGACG 62.838 72.222 0.00 0.00 43.06 5.12
1874 4981 7.012232 ACTCCAAACTCGCTTACTACTACTATC 59.988 40.741 0.00 0.00 0.00 2.08
1885 5001 8.938906 GCTTACTACTACTATCTACACCATCTC 58.061 40.741 0.00 0.00 0.00 2.75
1911 5027 5.570589 CAGTTCTAAAGGAGGTACGTTAACG 59.429 44.000 25.68 25.68 46.33 3.18
1912 5028 4.701956 TCTAAAGGAGGTACGTTAACGG 57.298 45.455 29.81 13.45 44.95 4.44
1913 5029 4.079253 TCTAAAGGAGGTACGTTAACGGT 58.921 43.478 29.81 18.08 44.95 4.83
1914 5030 3.751479 AAAGGAGGTACGTTAACGGTT 57.249 42.857 29.81 14.03 44.95 4.44
1915 5031 4.864704 AAAGGAGGTACGTTAACGGTTA 57.135 40.909 29.81 13.00 44.95 2.85
1916 5032 4.864704 AAGGAGGTACGTTAACGGTTAA 57.135 40.909 29.81 9.18 44.95 2.01
1917 5033 4.174411 AGGAGGTACGTTAACGGTTAAC 57.826 45.455 29.81 26.31 44.95 2.01
2064 5180 2.421424 GCTGCAGTATGACTTCTTTGGG 59.579 50.000 16.64 0.00 39.69 4.12
2145 5284 2.115343 ACGGAGGCAAAAGATTCCTC 57.885 50.000 0.00 0.00 44.28 3.71
2377 5586 1.269998 GGACTGAGTAGAGTGCAACGT 59.730 52.381 0.00 0.00 45.86 3.99
2391 5600 1.935300 GCAACGTTGTCATCTCGGAGT 60.935 52.381 27.78 0.00 0.00 3.85
2408 5617 2.095161 GGAGTGTCTTCGATCGTGAGTT 60.095 50.000 15.94 3.76 0.00 3.01
3004 6421 0.611062 AGTCGTCCGTCCTCCAATCA 60.611 55.000 0.00 0.00 0.00 2.57
3037 6460 1.732259 CAACAAGGCTGACGATGGTAC 59.268 52.381 0.00 0.00 0.00 3.34
3159 6592 0.316689 GAGTTCCAACCAAACGCGTG 60.317 55.000 14.98 2.11 0.00 5.34
3160 6593 0.745128 AGTTCCAACCAAACGCGTGA 60.745 50.000 14.98 0.00 0.00 4.35
3161 6594 0.590481 GTTCCAACCAAACGCGTGAC 60.590 55.000 14.98 0.00 0.00 3.67
3178 6611 4.720530 GTGACGAACGAATACCAAGTTT 57.279 40.909 0.14 0.00 0.00 2.66
3179 6612 5.827568 GTGACGAACGAATACCAAGTTTA 57.172 39.130 0.14 0.00 0.00 2.01
3180 6613 5.840250 GTGACGAACGAATACCAAGTTTAG 58.160 41.667 0.14 0.00 0.00 1.85
3181 6614 5.630680 GTGACGAACGAATACCAAGTTTAGA 59.369 40.000 0.14 0.00 0.00 2.10
3182 6615 5.860182 TGACGAACGAATACCAAGTTTAGAG 59.140 40.000 0.14 0.00 0.00 2.43
3183 6616 5.166398 ACGAACGAATACCAAGTTTAGAGG 58.834 41.667 0.14 0.00 0.00 3.69
3184 6617 4.565564 CGAACGAATACCAAGTTTAGAGGG 59.434 45.833 0.00 0.00 0.00 4.30
3185 6618 3.870274 ACGAATACCAAGTTTAGAGGGC 58.130 45.455 0.00 0.00 0.00 5.19
3186 6619 3.518303 ACGAATACCAAGTTTAGAGGGCT 59.482 43.478 0.00 0.00 0.00 5.19
3187 6620 3.871594 CGAATACCAAGTTTAGAGGGCTG 59.128 47.826 0.00 0.00 0.00 4.85
3188 6621 4.382685 CGAATACCAAGTTTAGAGGGCTGA 60.383 45.833 0.00 0.00 0.00 4.26
3189 6622 5.497474 GAATACCAAGTTTAGAGGGCTGAA 58.503 41.667 0.00 0.00 0.00 3.02
3190 6623 3.876309 ACCAAGTTTAGAGGGCTGAAA 57.124 42.857 0.00 0.00 0.00 2.69
3191 6624 4.178956 ACCAAGTTTAGAGGGCTGAAAA 57.821 40.909 0.00 0.00 0.00 2.29
3192 6625 4.145052 ACCAAGTTTAGAGGGCTGAAAAG 58.855 43.478 0.00 0.00 0.00 2.27
3193 6626 4.145052 CCAAGTTTAGAGGGCTGAAAAGT 58.855 43.478 0.00 0.00 0.00 2.66
3194 6627 4.584743 CCAAGTTTAGAGGGCTGAAAAGTT 59.415 41.667 0.00 0.00 0.00 2.66
3195 6628 5.507985 CCAAGTTTAGAGGGCTGAAAAGTTG 60.508 44.000 7.07 7.07 39.93 3.16
3196 6629 4.793201 AGTTTAGAGGGCTGAAAAGTTGT 58.207 39.130 0.00 0.00 0.00 3.32
3197 6630 5.937111 AGTTTAGAGGGCTGAAAAGTTGTA 58.063 37.500 0.00 0.00 0.00 2.41
3198 6631 5.763698 AGTTTAGAGGGCTGAAAAGTTGTAC 59.236 40.000 0.00 0.00 0.00 2.90
3199 6632 3.857157 AGAGGGCTGAAAAGTTGTACA 57.143 42.857 0.00 0.00 0.00 2.90
3200 6633 3.477530 AGAGGGCTGAAAAGTTGTACAC 58.522 45.455 0.00 0.00 0.00 2.90
3201 6634 3.136626 AGAGGGCTGAAAAGTTGTACACT 59.863 43.478 0.00 0.00 37.30 3.55
3229 6662 9.690913 TTATATAAGACTAGTACATATGCCCGT 57.309 33.333 1.58 0.00 0.00 5.28
3230 6663 4.585955 AAGACTAGTACATATGCCCGTG 57.414 45.455 1.58 0.00 0.00 4.94
3231 6664 2.296471 AGACTAGTACATATGCCCGTGC 59.704 50.000 1.58 0.00 38.26 5.34
3232 6665 1.000607 ACTAGTACATATGCCCGTGCG 60.001 52.381 1.58 0.00 41.78 5.34
3233 6666 1.000607 CTAGTACATATGCCCGTGCGT 60.001 52.381 1.58 0.00 41.78 5.24
3234 6667 0.177141 AGTACATATGCCCGTGCGTT 59.823 50.000 1.58 0.00 41.78 4.84
3235 6668 0.303493 GTACATATGCCCGTGCGTTG 59.697 55.000 1.58 0.00 41.78 4.10
3236 6669 1.433053 TACATATGCCCGTGCGTTGC 61.433 55.000 1.58 0.00 41.78 4.17
3237 6670 2.437537 ATATGCCCGTGCGTTGCA 60.438 55.556 8.11 8.11 41.78 4.08
3238 6671 2.043405 ATATGCCCGTGCGTTGCAA 61.043 52.632 0.00 0.00 41.47 4.08
3239 6672 2.265073 ATATGCCCGTGCGTTGCAAC 62.265 55.000 19.89 19.89 41.47 4.17
3253 6686 4.965119 GTTGCAACGGGAGAGAAATTAT 57.035 40.909 14.90 0.00 0.00 1.28
3254 6687 5.310720 GTTGCAACGGGAGAGAAATTATT 57.689 39.130 14.90 0.00 0.00 1.40
3255 6688 6.431198 GTTGCAACGGGAGAGAAATTATTA 57.569 37.500 14.90 0.00 0.00 0.98
3256 6689 7.027778 GTTGCAACGGGAGAGAAATTATTAT 57.972 36.000 14.90 0.00 0.00 1.28
3257 6690 6.618287 TGCAACGGGAGAGAAATTATTATG 57.382 37.500 0.00 0.00 0.00 1.90
3258 6691 5.008613 TGCAACGGGAGAGAAATTATTATGC 59.991 40.000 0.00 0.00 0.00 3.14
3259 6692 5.562890 GCAACGGGAGAGAAATTATTATGCC 60.563 44.000 0.00 0.00 0.00 4.40
3260 6693 4.652822 ACGGGAGAGAAATTATTATGCCC 58.347 43.478 0.00 0.00 0.00 5.36
3261 6694 4.104102 ACGGGAGAGAAATTATTATGCCCA 59.896 41.667 0.00 0.00 33.28 5.36
3262 6695 4.455877 CGGGAGAGAAATTATTATGCCCAC 59.544 45.833 0.00 0.00 33.28 4.61
3263 6696 5.635120 GGGAGAGAAATTATTATGCCCACT 58.365 41.667 0.00 0.00 33.28 4.00
3264 6697 5.474876 GGGAGAGAAATTATTATGCCCACTG 59.525 44.000 0.00 0.00 33.28 3.66
3265 6698 6.064717 GGAGAGAAATTATTATGCCCACTGT 58.935 40.000 0.00 0.00 0.00 3.55
3266 6699 6.205658 GGAGAGAAATTATTATGCCCACTGTC 59.794 42.308 0.00 0.00 0.00 3.51
3267 6700 6.064717 AGAGAAATTATTATGCCCACTGTCC 58.935 40.000 0.00 0.00 0.00 4.02
3268 6701 5.765510 AGAAATTATTATGCCCACTGTCCA 58.234 37.500 0.00 0.00 0.00 4.02
3269 6702 6.376248 AGAAATTATTATGCCCACTGTCCAT 58.624 36.000 0.00 0.00 0.00 3.41
3270 6703 6.491403 AGAAATTATTATGCCCACTGTCCATC 59.509 38.462 0.00 0.00 0.00 3.51
3271 6704 2.260844 ATTATGCCCACTGTCCATCG 57.739 50.000 0.00 0.00 0.00 3.84
3272 6705 1.199615 TTATGCCCACTGTCCATCGA 58.800 50.000 0.00 0.00 0.00 3.59
3273 6706 1.199615 TATGCCCACTGTCCATCGAA 58.800 50.000 0.00 0.00 0.00 3.71
3274 6707 0.327924 ATGCCCACTGTCCATCGAAA 59.672 50.000 0.00 0.00 0.00 3.46
3275 6708 0.605319 TGCCCACTGTCCATCGAAAC 60.605 55.000 0.00 0.00 0.00 2.78
3276 6709 1.635663 GCCCACTGTCCATCGAAACG 61.636 60.000 0.00 0.00 0.00 3.60
3277 6710 0.037697 CCCACTGTCCATCGAAACGA 60.038 55.000 0.00 0.00 41.13 3.85
3278 6711 1.068474 CCACTGTCCATCGAAACGAC 58.932 55.000 0.00 0.00 39.18 4.34
3279 6712 1.068474 CACTGTCCATCGAAACGACC 58.932 55.000 0.00 0.00 39.18 4.79
3280 6713 0.677288 ACTGTCCATCGAAACGACCA 59.323 50.000 0.00 0.00 39.18 4.02
3281 6714 1.275291 ACTGTCCATCGAAACGACCAT 59.725 47.619 0.00 0.00 39.18 3.55
3282 6715 1.927174 CTGTCCATCGAAACGACCATC 59.073 52.381 0.00 0.00 39.18 3.51
3283 6716 1.273886 TGTCCATCGAAACGACCATCA 59.726 47.619 0.00 0.00 39.18 3.07
3284 6717 2.093711 TGTCCATCGAAACGACCATCAT 60.094 45.455 0.00 0.00 39.18 2.45
3285 6718 2.540101 GTCCATCGAAACGACCATCATC 59.460 50.000 0.00 0.00 39.18 2.92
3286 6719 2.167487 TCCATCGAAACGACCATCATCA 59.833 45.455 0.00 0.00 39.18 3.07
3287 6720 3.133691 CCATCGAAACGACCATCATCAT 58.866 45.455 0.00 0.00 39.18 2.45
3288 6721 3.059393 CCATCGAAACGACCATCATCATG 60.059 47.826 0.00 0.00 39.18 3.07
3302 6735 6.802608 CCATCATCATGGCATAATAACATCC 58.197 40.000 0.00 0.00 43.55 3.51
3303 6736 6.459161 CCATCATCATGGCATAATAACATCCG 60.459 42.308 0.00 0.00 43.55 4.18
3304 6737 5.803552 TCATCATGGCATAATAACATCCGA 58.196 37.500 0.00 0.00 0.00 4.55
3305 6738 6.237154 TCATCATGGCATAATAACATCCGAA 58.763 36.000 0.00 0.00 0.00 4.30
3306 6739 6.714356 TCATCATGGCATAATAACATCCGAAA 59.286 34.615 0.00 0.00 0.00 3.46
3307 6740 6.558771 TCATGGCATAATAACATCCGAAAG 57.441 37.500 0.00 0.00 0.00 2.62
3308 6741 6.061441 TCATGGCATAATAACATCCGAAAGT 58.939 36.000 0.00 0.00 0.00 2.66
3309 6742 5.749596 TGGCATAATAACATCCGAAAGTG 57.250 39.130 0.00 0.00 0.00 3.16
3310 6743 4.036262 TGGCATAATAACATCCGAAAGTGC 59.964 41.667 0.00 0.00 0.00 4.40
3311 6744 4.537015 GCATAATAACATCCGAAAGTGCC 58.463 43.478 0.00 0.00 0.00 5.01
3312 6745 4.036262 GCATAATAACATCCGAAAGTGCCA 59.964 41.667 0.00 0.00 0.00 4.92
3313 6746 5.510671 CATAATAACATCCGAAAGTGCCAC 58.489 41.667 0.00 0.00 0.00 5.01
3314 6747 1.816074 TAACATCCGAAAGTGCCACC 58.184 50.000 0.00 0.00 0.00 4.61
3315 6748 0.110486 AACATCCGAAAGTGCCACCT 59.890 50.000 0.00 0.00 0.00 4.00
3316 6749 0.606401 ACATCCGAAAGTGCCACCTG 60.606 55.000 0.00 0.00 0.00 4.00
3317 6750 1.675641 ATCCGAAAGTGCCACCTGC 60.676 57.895 0.00 0.00 41.77 4.85
3318 6751 3.726517 CCGAAAGTGCCACCTGCG 61.727 66.667 0.00 0.00 45.60 5.18
3360 6793 5.622346 AAAATCACCTCACTCTCCTATCC 57.378 43.478 0.00 0.00 0.00 2.59
3361 6794 2.757894 TCACCTCACTCTCCTATCCC 57.242 55.000 0.00 0.00 0.00 3.85
3362 6795 1.930204 TCACCTCACTCTCCTATCCCA 59.070 52.381 0.00 0.00 0.00 4.37
3363 6796 2.091610 TCACCTCACTCTCCTATCCCAG 60.092 54.545 0.00 0.00 0.00 4.45
3364 6797 1.933765 ACCTCACTCTCCTATCCCAGT 59.066 52.381 0.00 0.00 0.00 4.00
3365 6798 3.117474 CACCTCACTCTCCTATCCCAGTA 60.117 52.174 0.00 0.00 0.00 2.74
3366 6799 3.532232 ACCTCACTCTCCTATCCCAGTAA 59.468 47.826 0.00 0.00 0.00 2.24
3367 6800 4.148838 CCTCACTCTCCTATCCCAGTAAG 58.851 52.174 0.00 0.00 0.00 2.34
3368 6801 3.567397 TCACTCTCCTATCCCAGTAAGC 58.433 50.000 0.00 0.00 0.00 3.09
3369 6802 3.052869 TCACTCTCCTATCCCAGTAAGCA 60.053 47.826 0.00 0.00 0.00 3.91
3370 6803 3.706594 CACTCTCCTATCCCAGTAAGCAA 59.293 47.826 0.00 0.00 0.00 3.91
3371 6804 3.964031 ACTCTCCTATCCCAGTAAGCAAG 59.036 47.826 0.00 0.00 0.00 4.01
3372 6805 3.964031 CTCTCCTATCCCAGTAAGCAAGT 59.036 47.826 0.00 0.00 0.00 3.16
3373 6806 3.706594 TCTCCTATCCCAGTAAGCAAGTG 59.293 47.826 0.00 0.00 0.00 3.16
3374 6807 3.706594 CTCCTATCCCAGTAAGCAAGTGA 59.293 47.826 0.00 0.00 0.00 3.41
3375 6808 4.298626 TCCTATCCCAGTAAGCAAGTGAT 58.701 43.478 0.00 0.00 0.00 3.06
3376 6809 4.101585 TCCTATCCCAGTAAGCAAGTGATG 59.898 45.833 0.00 0.00 0.00 3.07
3377 6810 4.101585 CCTATCCCAGTAAGCAAGTGATGA 59.898 45.833 0.00 0.00 0.00 2.92
3378 6811 4.785346 ATCCCAGTAAGCAAGTGATGAT 57.215 40.909 0.00 0.00 0.00 2.45
3379 6812 4.574674 TCCCAGTAAGCAAGTGATGATT 57.425 40.909 0.00 0.00 41.39 2.57
3380 6813 4.922206 TCCCAGTAAGCAAGTGATGATTT 58.078 39.130 0.00 0.00 38.83 2.17
3381 6814 4.701651 TCCCAGTAAGCAAGTGATGATTTG 59.298 41.667 0.00 0.00 38.83 2.32
3382 6815 4.701651 CCCAGTAAGCAAGTGATGATTTGA 59.298 41.667 0.00 0.00 38.83 2.69
3383 6816 5.163683 CCCAGTAAGCAAGTGATGATTTGAG 60.164 44.000 0.00 0.00 38.83 3.02
3384 6817 5.330295 CAGTAAGCAAGTGATGATTTGAGC 58.670 41.667 0.00 0.00 38.83 4.26
3385 6818 3.863142 AAGCAAGTGATGATTTGAGCC 57.137 42.857 0.00 0.00 32.67 4.70
3386 6819 3.083122 AGCAAGTGATGATTTGAGCCT 57.917 42.857 0.00 0.00 0.00 4.58
3387 6820 4.226427 AGCAAGTGATGATTTGAGCCTA 57.774 40.909 0.00 0.00 0.00 3.93
3388 6821 4.592942 AGCAAGTGATGATTTGAGCCTAA 58.407 39.130 0.00 0.00 0.00 2.69
3389 6822 5.012239 AGCAAGTGATGATTTGAGCCTAAA 58.988 37.500 0.00 0.00 0.00 1.85
3390 6823 5.098211 GCAAGTGATGATTTGAGCCTAAAC 58.902 41.667 0.00 0.00 0.00 2.01
3391 6824 5.335897 GCAAGTGATGATTTGAGCCTAAACA 60.336 40.000 0.00 0.00 0.00 2.83
3392 6825 5.886960 AGTGATGATTTGAGCCTAAACAC 57.113 39.130 0.00 0.00 0.00 3.32
3393 6826 5.316167 AGTGATGATTTGAGCCTAAACACA 58.684 37.500 0.00 0.00 0.00 3.72
3394 6827 5.769662 AGTGATGATTTGAGCCTAAACACAA 59.230 36.000 0.00 0.00 0.00 3.33
3395 6828 5.858581 GTGATGATTTGAGCCTAAACACAAC 59.141 40.000 0.00 0.00 0.00 3.32
3396 6829 4.846779 TGATTTGAGCCTAAACACAACC 57.153 40.909 0.00 0.00 0.00 3.77
3397 6830 4.469657 TGATTTGAGCCTAAACACAACCT 58.530 39.130 0.00 0.00 0.00 3.50
3398 6831 5.626142 TGATTTGAGCCTAAACACAACCTA 58.374 37.500 0.00 0.00 0.00 3.08
3399 6832 6.065374 TGATTTGAGCCTAAACACAACCTAA 58.935 36.000 0.00 0.00 0.00 2.69
3400 6833 6.547880 TGATTTGAGCCTAAACACAACCTAAA 59.452 34.615 0.00 0.00 0.00 1.85
3401 6834 5.761165 TTGAGCCTAAACACAACCTAAAC 57.239 39.130 0.00 0.00 0.00 2.01
3402 6835 4.139038 TGAGCCTAAACACAACCTAAACC 58.861 43.478 0.00 0.00 0.00 3.27
3403 6836 4.139038 GAGCCTAAACACAACCTAAACCA 58.861 43.478 0.00 0.00 0.00 3.67
3404 6837 4.736473 AGCCTAAACACAACCTAAACCAT 58.264 39.130 0.00 0.00 0.00 3.55
3405 6838 5.883180 AGCCTAAACACAACCTAAACCATA 58.117 37.500 0.00 0.00 0.00 2.74
3406 6839 6.308566 AGCCTAAACACAACCTAAACCATAA 58.691 36.000 0.00 0.00 0.00 1.90
3407 6840 6.433093 AGCCTAAACACAACCTAAACCATAAG 59.567 38.462 0.00 0.00 0.00 1.73
3408 6841 6.617879 CCTAAACACAACCTAAACCATAAGC 58.382 40.000 0.00 0.00 0.00 3.09
3409 6842 4.759516 AACACAACCTAAACCATAAGCG 57.240 40.909 0.00 0.00 0.00 4.68
3410 6843 3.078837 ACACAACCTAAACCATAAGCGG 58.921 45.455 0.00 0.00 0.00 5.52
3411 6844 3.078837 CACAACCTAAACCATAAGCGGT 58.921 45.455 0.00 0.00 42.71 5.68
3412 6845 3.078837 ACAACCTAAACCATAAGCGGTG 58.921 45.455 0.00 0.00 39.95 4.94
3413 6846 3.244630 ACAACCTAAACCATAAGCGGTGA 60.245 43.478 0.00 0.00 39.95 4.02
3414 6847 3.926058 ACCTAAACCATAAGCGGTGAT 57.074 42.857 0.00 0.00 39.95 3.06
3415 6848 4.230745 ACCTAAACCATAAGCGGTGATT 57.769 40.909 0.00 0.00 39.95 2.57
3416 6849 4.595986 ACCTAAACCATAAGCGGTGATTT 58.404 39.130 0.00 0.00 39.95 2.17
3417 6850 4.398044 ACCTAAACCATAAGCGGTGATTTG 59.602 41.667 0.00 0.00 39.95 2.32
3418 6851 4.638421 CCTAAACCATAAGCGGTGATTTGA 59.362 41.667 0.00 0.00 39.95 2.69
3419 6852 5.299279 CCTAAACCATAAGCGGTGATTTGAT 59.701 40.000 0.00 0.00 39.95 2.57
3420 6853 5.659440 AAACCATAAGCGGTGATTTGATT 57.341 34.783 0.00 0.00 39.95 2.57
3421 6854 5.659440 AACCATAAGCGGTGATTTGATTT 57.341 34.783 0.00 0.00 39.95 2.17
3422 6855 6.767524 AACCATAAGCGGTGATTTGATTTA 57.232 33.333 0.00 0.00 39.95 1.40
3423 6856 6.959639 ACCATAAGCGGTGATTTGATTTAT 57.040 33.333 0.00 0.00 38.07 1.40
3424 6857 6.738114 ACCATAAGCGGTGATTTGATTTATG 58.262 36.000 0.00 0.00 38.07 1.90
3425 6858 6.545666 ACCATAAGCGGTGATTTGATTTATGA 59.454 34.615 0.00 0.00 38.07 2.15
3426 6859 7.231317 ACCATAAGCGGTGATTTGATTTATGAT 59.769 33.333 0.00 0.00 38.07 2.45
3427 6860 8.729756 CCATAAGCGGTGATTTGATTTATGATA 58.270 33.333 0.00 0.00 31.84 2.15
3428 6861 9.546909 CATAAGCGGTGATTTGATTTATGATAC 57.453 33.333 0.00 0.00 31.84 2.24
3429 6862 7.566760 AAGCGGTGATTTGATTTATGATACA 57.433 32.000 0.00 0.00 0.00 2.29
3430 6863 6.959361 AGCGGTGATTTGATTTATGATACAC 58.041 36.000 0.00 0.00 0.00 2.90
3431 6864 6.542005 AGCGGTGATTTGATTTATGATACACA 59.458 34.615 0.00 0.00 0.00 3.72
3432 6865 7.229306 AGCGGTGATTTGATTTATGATACACAT 59.771 33.333 0.00 0.00 42.39 3.21
3433 6866 7.535258 GCGGTGATTTGATTTATGATACACATC 59.465 37.037 0.00 0.00 40.07 3.06
3434 6867 8.558700 CGGTGATTTGATTTATGATACACATCA 58.441 33.333 0.00 0.00 45.15 3.07
3449 6882 9.418839 TGATACACATCAATTATTCCCAAATGA 57.581 29.630 0.00 0.00 38.25 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.641436 TGCTATGTACCGGTCATCTCATT 59.359 43.478 12.40 0.00 0.00 2.57
78 79 1.668826 AAGGGTGTCAGCCAATAGGA 58.331 50.000 22.74 0.00 38.48 2.94
79 80 3.480470 CATAAGGGTGTCAGCCAATAGG 58.520 50.000 22.74 12.77 38.48 2.57
80 81 3.480470 CCATAAGGGTGTCAGCCAATAG 58.520 50.000 22.74 9.71 38.48 1.73
81 82 3.576078 CCATAAGGGTGTCAGCCAATA 57.424 47.619 22.74 14.94 38.48 1.90
82 83 2.442236 CCATAAGGGTGTCAGCCAAT 57.558 50.000 22.74 12.64 38.48 3.16
83 84 3.976704 CCATAAGGGTGTCAGCCAA 57.023 52.632 22.74 10.87 38.48 4.52
110 111 8.780249 GTTCTCTGTTACTCTCTATCCATCTAC 58.220 40.741 0.00 0.00 0.00 2.59
181 185 2.541588 GCGCATTGTGAGACTTTGTGTT 60.542 45.455 0.30 0.00 0.00 3.32
191 195 4.799473 CCGCGTGCGCATTGTGAG 62.799 66.667 22.71 11.78 42.06 3.51
203 983 4.572571 TCTGGTTTTGGCCCGCGT 62.573 61.111 4.92 0.00 0.00 6.01
211 994 1.539827 CGTTAAGGGCCTCTGGTTTTG 59.460 52.381 6.46 0.00 0.00 2.44
289 1078 2.104253 ATTAAACCGCACGCTCCCG 61.104 57.895 0.00 0.00 41.14 5.14
298 1087 1.470805 GCCCATTGTCCATTAAACCGC 60.471 52.381 0.00 0.00 0.00 5.68
326 1118 1.872237 CGTTTGTCCGTCCATGTCAGT 60.872 52.381 0.00 0.00 0.00 3.41
327 1119 0.790207 CGTTTGTCCGTCCATGTCAG 59.210 55.000 0.00 0.00 0.00 3.51
328 1120 0.601576 CCGTTTGTCCGTCCATGTCA 60.602 55.000 0.00 0.00 0.00 3.58
329 1121 0.320073 TCCGTTTGTCCGTCCATGTC 60.320 55.000 0.00 0.00 0.00 3.06
330 1122 0.323629 ATCCGTTTGTCCGTCCATGT 59.676 50.000 0.00 0.00 0.00 3.21
331 1123 1.006832 GATCCGTTTGTCCGTCCATG 58.993 55.000 0.00 0.00 0.00 3.66
332 1124 0.107848 GGATCCGTTTGTCCGTCCAT 60.108 55.000 0.00 0.00 0.00 3.41
333 1125 1.294138 GGATCCGTTTGTCCGTCCA 59.706 57.895 0.00 0.00 0.00 4.02
382 1174 2.101233 GGCGCCGAGAACCTTCTTC 61.101 63.158 12.58 0.00 37.73 2.87
383 1175 2.047179 GGCGCCGAGAACCTTCTT 60.047 61.111 12.58 0.00 37.73 2.52
389 1181 0.247537 CGTAATTTGGCGCCGAGAAC 60.248 55.000 23.90 17.11 0.00 3.01
445 1237 3.535280 AAAGGGTGCACGATTGTTTTT 57.465 38.095 11.45 0.93 0.00 1.94
446 1238 3.453424 GAAAAGGGTGCACGATTGTTTT 58.547 40.909 11.45 11.12 0.00 2.43
449 1241 0.958822 GGAAAAGGGTGCACGATTGT 59.041 50.000 11.45 2.67 0.00 2.71
450 1242 1.247567 AGGAAAAGGGTGCACGATTG 58.752 50.000 11.45 0.00 0.00 2.67
462 1257 1.725164 GTACACGCGAGGAAGGAAAAG 59.275 52.381 15.93 0.00 0.00 2.27
473 1268 4.495349 GCTCTTCTTATACTGTACACGCGA 60.495 45.833 15.93 0.00 0.00 5.87
474 1269 3.724751 GCTCTTCTTATACTGTACACGCG 59.275 47.826 3.53 3.53 0.00 6.01
475 1270 4.669318 TGCTCTTCTTATACTGTACACGC 58.331 43.478 0.00 0.00 0.00 5.34
476 1271 5.066117 TCCTGCTCTTCTTATACTGTACACG 59.934 44.000 0.00 0.00 0.00 4.49
477 1272 6.267070 GTCCTGCTCTTCTTATACTGTACAC 58.733 44.000 0.00 0.00 0.00 2.90
478 1273 5.066117 CGTCCTGCTCTTCTTATACTGTACA 59.934 44.000 0.00 0.00 0.00 2.90
479 1274 5.512473 CGTCCTGCTCTTCTTATACTGTAC 58.488 45.833 0.00 0.00 0.00 2.90
481 1276 3.181485 GCGTCCTGCTCTTCTTATACTGT 60.181 47.826 0.00 0.00 41.73 3.55
512 1349 2.752322 TACGACCGGCGGTGACAAAG 62.752 60.000 39.41 20.89 46.49 2.77
975 1812 2.546795 CCGCTCTCTCTCTCTCTCTCTC 60.547 59.091 0.00 0.00 0.00 3.20
976 1813 1.414181 CCGCTCTCTCTCTCTCTCTCT 59.586 57.143 0.00 0.00 0.00 3.10
977 1814 1.541233 CCCGCTCTCTCTCTCTCTCTC 60.541 61.905 0.00 0.00 0.00 3.20
978 1815 0.469917 CCCGCTCTCTCTCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
979 1816 0.180406 ACCCGCTCTCTCTCTCTCTC 59.820 60.000 0.00 0.00 0.00 3.20
980 1817 0.623723 AACCCGCTCTCTCTCTCTCT 59.376 55.000 0.00 0.00 0.00 3.10
981 1818 2.335316 TAACCCGCTCTCTCTCTCTC 57.665 55.000 0.00 0.00 0.00 3.20
982 1819 2.582052 CATAACCCGCTCTCTCTCTCT 58.418 52.381 0.00 0.00 0.00 3.10
983 1820 1.611491 CCATAACCCGCTCTCTCTCTC 59.389 57.143 0.00 0.00 0.00 3.20
984 1821 1.698506 CCATAACCCGCTCTCTCTCT 58.301 55.000 0.00 0.00 0.00 3.10
985 1822 0.032815 GCCATAACCCGCTCTCTCTC 59.967 60.000 0.00 0.00 0.00 3.20
986 1823 1.739338 CGCCATAACCCGCTCTCTCT 61.739 60.000 0.00 0.00 0.00 3.10
987 1824 1.300233 CGCCATAACCCGCTCTCTC 60.300 63.158 0.00 0.00 0.00 3.20
988 1825 2.797278 CCGCCATAACCCGCTCTCT 61.797 63.158 0.00 0.00 0.00 3.10
989 1826 2.280186 CCGCCATAACCCGCTCTC 60.280 66.667 0.00 0.00 0.00 3.20
990 1827 2.762459 TCCGCCATAACCCGCTCT 60.762 61.111 0.00 0.00 0.00 4.09
991 1828 2.280186 CTCCGCCATAACCCGCTC 60.280 66.667 0.00 0.00 0.00 5.03
992 1829 3.861797 CCTCCGCCATAACCCGCT 61.862 66.667 0.00 0.00 0.00 5.52
1140 1977 6.255020 CCGAAAGCACGTACAGTAAGAATTAT 59.745 38.462 0.00 0.00 30.46 1.28
1184 2021 5.008619 TGCTTTGCTGATGAAAGTTGAAA 57.991 34.783 0.00 0.00 33.66 2.69
1185 2022 4.652421 TGCTTTGCTGATGAAAGTTGAA 57.348 36.364 0.00 0.00 33.66 2.69
1186 2023 4.652421 TTGCTTTGCTGATGAAAGTTGA 57.348 36.364 0.00 0.00 33.66 3.18
1187 2024 4.567558 TGTTTGCTTTGCTGATGAAAGTTG 59.432 37.500 0.00 0.00 33.66 3.16
1188 2025 4.757594 TGTTTGCTTTGCTGATGAAAGTT 58.242 34.783 0.00 0.00 33.66 2.66
1189 2026 4.389890 TGTTTGCTTTGCTGATGAAAGT 57.610 36.364 0.00 0.00 33.66 2.66
1190 2027 6.128742 GGTTATGTTTGCTTTGCTGATGAAAG 60.129 38.462 0.00 0.00 34.16 2.62
1231 2071 1.863454 CGAGCCAAGTCTGCATGATAC 59.137 52.381 0.00 0.00 0.00 2.24
1405 2349 0.464452 CCCAGAACCCTACGGATCAC 59.536 60.000 0.00 0.00 33.37 3.06
1416 2360 0.746923 GGGTACGCATTCCCAGAACC 60.747 60.000 4.83 0.00 42.95 3.62
1454 2402 8.455682 ACATAAGTTACATAACCAATCAAACCG 58.544 33.333 0.00 0.00 36.88 4.44
1617 3338 9.762381 TTTTTGCGGGGGATAGAATAATAATAT 57.238 29.630 0.00 0.00 0.00 1.28
1618 3339 9.762381 ATTTTTGCGGGGGATAGAATAATAATA 57.238 29.630 0.00 0.00 0.00 0.98
1619 3340 8.664669 ATTTTTGCGGGGGATAGAATAATAAT 57.335 30.769 0.00 0.00 0.00 1.28
1620 3341 9.762381 ATATTTTTGCGGGGGATAGAATAATAA 57.238 29.630 0.00 0.00 0.00 1.40
1622 3343 9.936329 ATATATTTTTGCGGGGGATAGAATAAT 57.064 29.630 0.00 0.00 0.00 1.28
1625 3346 9.936329 AATATATATTTTTGCGGGGGATAGAAT 57.064 29.630 1.91 0.00 0.00 2.40
1630 3351 9.936329 AGAATAATATATATTTTTGCGGGGGAT 57.064 29.630 13.09 0.00 0.00 3.85
1684 3411 5.877012 TGAATAAGAGCTAGCTTTGGTGAAG 59.123 40.000 20.42 0.00 38.45 3.02
1709 3436 3.967332 ACCCATCATGAAAAGCAAAGG 57.033 42.857 0.00 0.00 0.00 3.11
1815 4922 1.246737 ACCTTCCCTCCGTGTCGTAC 61.247 60.000 0.00 0.00 0.00 3.67
1874 4981 6.378564 TCCTTTAGAACTGAGAGATGGTGTAG 59.621 42.308 0.00 0.00 0.00 2.74
1885 5001 5.388408 AACGTACCTCCTTTAGAACTGAG 57.612 43.478 0.00 0.00 0.00 3.35
1911 5027 8.920509 ATTTTGTTTCACAGTTGTAGTTAACC 57.079 30.769 0.88 0.00 0.00 2.85
1916 5032 9.569122 ACCTATATTTTGTTTCACAGTTGTAGT 57.431 29.630 0.00 0.00 0.00 2.73
1932 5048 7.833285 ATTTACCGGCATGAACCTATATTTT 57.167 32.000 0.00 0.00 0.00 1.82
2010 5126 1.825341 CATCCTCCAGATGTCGCCA 59.175 57.895 0.00 0.00 46.32 5.69
2041 5157 3.341823 CAAAGAAGTCATACTGCAGCCT 58.658 45.455 15.27 0.00 0.00 4.58
2064 5180 2.300437 AGAGTTCCTAAGTGCTCACCAC 59.700 50.000 0.00 0.00 45.01 4.16
2115 5248 9.719355 AATCTTTTGCCTCCGTTTTATTTAAAT 57.281 25.926 5.89 5.89 0.00 1.40
2120 5259 5.480422 AGGAATCTTTTGCCTCCGTTTTATT 59.520 36.000 0.00 0.00 32.91 1.40
2122 5261 4.403734 AGGAATCTTTTGCCTCCGTTTTA 58.596 39.130 0.00 0.00 32.91 1.52
2145 5284 5.041287 TGAGTGAAACAACGTCTTCAGTAG 58.959 41.667 12.66 0.00 41.43 2.57
2377 5586 2.095212 CGAAGACACTCCGAGATGACAA 60.095 50.000 1.33 0.00 0.00 3.18
2391 5600 3.972403 TGAAAACTCACGATCGAAGACA 58.028 40.909 24.34 14.21 42.51 3.41
2408 5617 6.669125 AATCAATCTGGTCCACATTTGAAA 57.331 33.333 9.35 0.00 35.81 2.69
3037 6460 0.175989 GGGAGTAGAAAGCCGTGGAG 59.824 60.000 0.00 0.00 0.00 3.86
3159 6592 5.287992 CCTCTAAACTTGGTATTCGTTCGTC 59.712 44.000 0.00 0.00 0.00 4.20
3160 6593 5.166398 CCTCTAAACTTGGTATTCGTTCGT 58.834 41.667 0.00 0.00 0.00 3.85
3161 6594 4.565564 CCCTCTAAACTTGGTATTCGTTCG 59.434 45.833 0.00 0.00 0.00 3.95
3162 6595 4.331992 GCCCTCTAAACTTGGTATTCGTTC 59.668 45.833 0.00 0.00 0.00 3.95
3163 6596 4.019591 AGCCCTCTAAACTTGGTATTCGTT 60.020 41.667 0.00 0.00 0.00 3.85
3164 6597 3.518303 AGCCCTCTAAACTTGGTATTCGT 59.482 43.478 0.00 0.00 0.00 3.85
3165 6598 3.871594 CAGCCCTCTAAACTTGGTATTCG 59.128 47.826 0.00 0.00 0.00 3.34
3166 6599 5.099042 TCAGCCCTCTAAACTTGGTATTC 57.901 43.478 0.00 0.00 0.00 1.75
3167 6600 5.514500 TTCAGCCCTCTAAACTTGGTATT 57.486 39.130 0.00 0.00 0.00 1.89
3168 6601 5.514500 TTTCAGCCCTCTAAACTTGGTAT 57.486 39.130 0.00 0.00 0.00 2.73
3169 6602 4.986054 TTTCAGCCCTCTAAACTTGGTA 57.014 40.909 0.00 0.00 0.00 3.25
3170 6603 3.876309 TTTCAGCCCTCTAAACTTGGT 57.124 42.857 0.00 0.00 0.00 3.67
3171 6604 4.145052 ACTTTTCAGCCCTCTAAACTTGG 58.855 43.478 0.00 0.00 0.00 3.61
3172 6605 5.067805 ACAACTTTTCAGCCCTCTAAACTTG 59.932 40.000 0.00 0.00 0.00 3.16
3173 6606 5.201243 ACAACTTTTCAGCCCTCTAAACTT 58.799 37.500 0.00 0.00 0.00 2.66
3174 6607 4.793201 ACAACTTTTCAGCCCTCTAAACT 58.207 39.130 0.00 0.00 0.00 2.66
3175 6608 5.529800 TGTACAACTTTTCAGCCCTCTAAAC 59.470 40.000 0.00 0.00 0.00 2.01
3176 6609 5.529800 GTGTACAACTTTTCAGCCCTCTAAA 59.470 40.000 0.00 0.00 0.00 1.85
3177 6610 5.061179 GTGTACAACTTTTCAGCCCTCTAA 58.939 41.667 0.00 0.00 0.00 2.10
3178 6611 4.347000 AGTGTACAACTTTTCAGCCCTCTA 59.653 41.667 0.00 0.00 34.57 2.43
3179 6612 3.136626 AGTGTACAACTTTTCAGCCCTCT 59.863 43.478 0.00 0.00 34.57 3.69
3180 6613 3.477530 AGTGTACAACTTTTCAGCCCTC 58.522 45.455 0.00 0.00 34.57 4.30
3181 6614 3.577805 AGTGTACAACTTTTCAGCCCT 57.422 42.857 0.00 0.00 34.57 5.19
3203 6636 9.690913 ACGGGCATATGTACTAGTCTTATATAA 57.309 33.333 0.00 0.00 0.00 0.98
3204 6637 9.117183 CACGGGCATATGTACTAGTCTTATATA 57.883 37.037 0.00 0.00 0.00 0.86
3205 6638 7.416438 GCACGGGCATATGTACTAGTCTTATAT 60.416 40.741 3.77 0.00 40.72 0.86
3206 6639 6.127814 GCACGGGCATATGTACTAGTCTTATA 60.128 42.308 3.77 0.00 40.72 0.98
3207 6640 5.336531 GCACGGGCATATGTACTAGTCTTAT 60.337 44.000 3.77 0.00 40.72 1.73
3208 6641 4.022589 GCACGGGCATATGTACTAGTCTTA 60.023 45.833 3.77 0.00 40.72 2.10
3209 6642 3.243771 GCACGGGCATATGTACTAGTCTT 60.244 47.826 3.77 0.00 40.72 3.01
3210 6643 2.296471 GCACGGGCATATGTACTAGTCT 59.704 50.000 3.77 0.00 40.72 3.24
3211 6644 2.673833 GCACGGGCATATGTACTAGTC 58.326 52.381 3.77 0.00 40.72 2.59
3212 6645 1.000607 CGCACGGGCATATGTACTAGT 60.001 52.381 11.77 0.00 41.24 2.57
3213 6646 1.000607 ACGCACGGGCATATGTACTAG 60.001 52.381 11.77 0.00 41.24 2.57
3214 6647 1.034356 ACGCACGGGCATATGTACTA 58.966 50.000 11.77 0.00 41.24 1.82
3215 6648 0.177141 AACGCACGGGCATATGTACT 59.823 50.000 11.77 0.00 41.24 2.73
3216 6649 0.303493 CAACGCACGGGCATATGTAC 59.697 55.000 11.77 0.00 41.24 2.90
3217 6650 1.433053 GCAACGCACGGGCATATGTA 61.433 55.000 11.77 0.00 41.24 2.29
3218 6651 2.760159 GCAACGCACGGGCATATGT 61.760 57.895 11.77 0.00 41.24 2.29
3219 6652 2.024588 GCAACGCACGGGCATATG 59.975 61.111 11.77 6.17 41.24 1.78
3220 6653 2.043405 TTGCAACGCACGGGCATAT 61.043 52.632 11.77 0.00 38.71 1.78
3221 6654 2.669910 TTGCAACGCACGGGCATA 60.670 55.556 11.77 0.00 38.71 3.14
3222 6655 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
3232 6665 4.965119 ATAATTTCTCTCCCGTTGCAAC 57.035 40.909 19.89 19.89 0.00 4.17
3233 6666 6.459573 GCATAATAATTTCTCTCCCGTTGCAA 60.460 38.462 0.00 0.00 0.00 4.08
3234 6667 5.008613 GCATAATAATTTCTCTCCCGTTGCA 59.991 40.000 0.00 0.00 0.00 4.08
3235 6668 5.452777 GCATAATAATTTCTCTCCCGTTGC 58.547 41.667 0.00 0.00 0.00 4.17
3236 6669 5.048713 GGGCATAATAATTTCTCTCCCGTTG 60.049 44.000 0.00 0.00 0.00 4.10
3237 6670 5.070685 GGGCATAATAATTTCTCTCCCGTT 58.929 41.667 0.00 0.00 0.00 4.44
3238 6671 4.104102 TGGGCATAATAATTTCTCTCCCGT 59.896 41.667 0.00 0.00 34.06 5.28
3239 6672 4.455877 GTGGGCATAATAATTTCTCTCCCG 59.544 45.833 0.00 0.00 34.06 5.14
3240 6673 5.474876 CAGTGGGCATAATAATTTCTCTCCC 59.525 44.000 0.00 0.00 0.00 4.30
3241 6674 6.064717 ACAGTGGGCATAATAATTTCTCTCC 58.935 40.000 0.00 0.00 0.00 3.71
3242 6675 6.205658 GGACAGTGGGCATAATAATTTCTCTC 59.794 42.308 0.00 0.00 0.00 3.20
3243 6676 6.064717 GGACAGTGGGCATAATAATTTCTCT 58.935 40.000 0.00 0.00 0.00 3.10
3244 6677 5.827797 TGGACAGTGGGCATAATAATTTCTC 59.172 40.000 0.00 0.00 0.00 2.87
3245 6678 5.765510 TGGACAGTGGGCATAATAATTTCT 58.234 37.500 0.00 0.00 0.00 2.52
3246 6679 6.568462 CGATGGACAGTGGGCATAATAATTTC 60.568 42.308 0.00 0.00 0.00 2.17
3247 6680 5.241506 CGATGGACAGTGGGCATAATAATTT 59.758 40.000 0.00 0.00 0.00 1.82
3248 6681 4.761739 CGATGGACAGTGGGCATAATAATT 59.238 41.667 0.00 0.00 0.00 1.40
3249 6682 4.041567 TCGATGGACAGTGGGCATAATAAT 59.958 41.667 0.00 0.00 0.00 1.28
3250 6683 3.389656 TCGATGGACAGTGGGCATAATAA 59.610 43.478 0.00 0.00 0.00 1.40
3251 6684 2.969262 TCGATGGACAGTGGGCATAATA 59.031 45.455 0.00 0.00 0.00 0.98
3252 6685 1.768275 TCGATGGACAGTGGGCATAAT 59.232 47.619 0.00 0.00 0.00 1.28
3253 6686 1.199615 TCGATGGACAGTGGGCATAA 58.800 50.000 0.00 0.00 0.00 1.90
3254 6687 1.199615 TTCGATGGACAGTGGGCATA 58.800 50.000 0.00 0.00 0.00 3.14
3255 6688 0.327924 TTTCGATGGACAGTGGGCAT 59.672 50.000 0.00 0.00 0.00 4.40
3256 6689 0.605319 GTTTCGATGGACAGTGGGCA 60.605 55.000 0.00 0.00 0.00 5.36
3257 6690 1.635663 CGTTTCGATGGACAGTGGGC 61.636 60.000 0.00 0.00 0.00 5.36
3258 6691 0.037697 TCGTTTCGATGGACAGTGGG 60.038 55.000 0.00 0.00 0.00 4.61
3259 6692 1.068474 GTCGTTTCGATGGACAGTGG 58.932 55.000 0.00 0.00 38.42 4.00
3260 6693 1.068474 GGTCGTTTCGATGGACAGTG 58.932 55.000 11.53 0.00 38.42 3.66
3261 6694 0.677288 TGGTCGTTTCGATGGACAGT 59.323 50.000 11.53 0.00 38.42 3.55
3262 6695 1.927174 GATGGTCGTTTCGATGGACAG 59.073 52.381 11.53 0.00 38.42 3.51
3263 6696 1.273886 TGATGGTCGTTTCGATGGACA 59.726 47.619 11.53 0.00 38.42 4.02
3264 6697 2.004583 TGATGGTCGTTTCGATGGAC 57.995 50.000 0.00 0.00 38.42 4.02
3265 6698 2.167487 TGATGATGGTCGTTTCGATGGA 59.833 45.455 0.00 0.00 38.42 3.41
3266 6699 2.549926 TGATGATGGTCGTTTCGATGG 58.450 47.619 0.00 0.00 38.42 3.51
3267 6700 3.059393 CCATGATGATGGTCGTTTCGATG 60.059 47.826 2.51 0.00 43.98 3.84
3268 6701 3.133691 CCATGATGATGGTCGTTTCGAT 58.866 45.455 2.51 0.00 43.98 3.59
3269 6702 2.549926 CCATGATGATGGTCGTTTCGA 58.450 47.619 2.51 0.00 43.98 3.71
3279 6712 6.316890 TCGGATGTTATTATGCCATGATGATG 59.683 38.462 0.00 0.00 0.00 3.07
3280 6713 6.417258 TCGGATGTTATTATGCCATGATGAT 58.583 36.000 0.00 0.00 0.00 2.45
3281 6714 5.803552 TCGGATGTTATTATGCCATGATGA 58.196 37.500 0.00 0.00 0.00 2.92
3282 6715 6.499234 TTCGGATGTTATTATGCCATGATG 57.501 37.500 0.00 0.00 0.00 3.07
3283 6716 6.716628 ACTTTCGGATGTTATTATGCCATGAT 59.283 34.615 0.00 0.00 0.00 2.45
3284 6717 6.017192 CACTTTCGGATGTTATTATGCCATGA 60.017 38.462 0.00 0.00 0.00 3.07
3285 6718 6.144854 CACTTTCGGATGTTATTATGCCATG 58.855 40.000 0.00 0.00 0.00 3.66
3286 6719 5.278463 GCACTTTCGGATGTTATTATGCCAT 60.278 40.000 0.00 0.00 0.00 4.40
3287 6720 4.036262 GCACTTTCGGATGTTATTATGCCA 59.964 41.667 0.00 0.00 0.00 4.92
3288 6721 4.537015 GCACTTTCGGATGTTATTATGCC 58.463 43.478 0.00 0.00 0.00 4.40
3289 6722 4.036262 TGGCACTTTCGGATGTTATTATGC 59.964 41.667 0.00 0.00 0.00 3.14
3290 6723 5.505654 GGTGGCACTTTCGGATGTTATTATG 60.506 44.000 18.45 0.00 0.00 1.90
3291 6724 4.578928 GGTGGCACTTTCGGATGTTATTAT 59.421 41.667 18.45 0.00 0.00 1.28
3292 6725 3.942748 GGTGGCACTTTCGGATGTTATTA 59.057 43.478 18.45 0.00 0.00 0.98
3293 6726 2.752903 GGTGGCACTTTCGGATGTTATT 59.247 45.455 18.45 0.00 0.00 1.40
3294 6727 2.026262 AGGTGGCACTTTCGGATGTTAT 60.026 45.455 18.45 0.00 0.00 1.89
3295 6728 1.349688 AGGTGGCACTTTCGGATGTTA 59.650 47.619 18.45 0.00 0.00 2.41
3296 6729 0.110486 AGGTGGCACTTTCGGATGTT 59.890 50.000 18.45 0.00 0.00 2.71
3297 6730 0.606401 CAGGTGGCACTTTCGGATGT 60.606 55.000 18.45 0.00 0.00 3.06
3298 6731 1.926511 GCAGGTGGCACTTTCGGATG 61.927 60.000 18.45 6.48 43.97 3.51
3299 6732 1.675641 GCAGGTGGCACTTTCGGAT 60.676 57.895 18.45 0.00 43.97 4.18
3300 6733 2.281484 GCAGGTGGCACTTTCGGA 60.281 61.111 18.45 0.00 43.97 4.55
3301 6734 3.726517 CGCAGGTGGCACTTTCGG 61.727 66.667 18.45 2.83 45.17 4.30
3302 6735 4.389576 GCGCAGGTGGCACTTTCG 62.390 66.667 16.61 16.61 45.17 3.46
3303 6736 4.389576 CGCGCAGGTGGCACTTTC 62.390 66.667 18.45 3.02 45.17 2.62
3337 6770 5.104318 GGGATAGGAGAGTGAGGTGATTTTT 60.104 44.000 0.00 0.00 0.00 1.94
3338 6771 4.410555 GGGATAGGAGAGTGAGGTGATTTT 59.589 45.833 0.00 0.00 0.00 1.82
3339 6772 3.970640 GGGATAGGAGAGTGAGGTGATTT 59.029 47.826 0.00 0.00 0.00 2.17
3340 6773 3.051803 TGGGATAGGAGAGTGAGGTGATT 60.052 47.826 0.00 0.00 0.00 2.57
3341 6774 2.520120 TGGGATAGGAGAGTGAGGTGAT 59.480 50.000 0.00 0.00 0.00 3.06
3342 6775 1.930204 TGGGATAGGAGAGTGAGGTGA 59.070 52.381 0.00 0.00 0.00 4.02
3343 6776 2.315176 CTGGGATAGGAGAGTGAGGTG 58.685 57.143 0.00 0.00 0.00 4.00
3344 6777 1.933765 ACTGGGATAGGAGAGTGAGGT 59.066 52.381 0.00 0.00 0.00 3.85
3345 6778 2.765689 ACTGGGATAGGAGAGTGAGG 57.234 55.000 0.00 0.00 0.00 3.86
3346 6779 3.572255 GCTTACTGGGATAGGAGAGTGAG 59.428 52.174 0.00 0.00 0.00 3.51
3347 6780 3.052869 TGCTTACTGGGATAGGAGAGTGA 60.053 47.826 0.00 0.00 0.00 3.41
3348 6781 3.300388 TGCTTACTGGGATAGGAGAGTG 58.700 50.000 0.00 0.00 0.00 3.51
3349 6782 3.689872 TGCTTACTGGGATAGGAGAGT 57.310 47.619 0.00 0.00 0.00 3.24
3350 6783 3.964031 ACTTGCTTACTGGGATAGGAGAG 59.036 47.826 0.00 0.00 0.00 3.20
3351 6784 3.706594 CACTTGCTTACTGGGATAGGAGA 59.293 47.826 0.00 0.00 0.00 3.71
3352 6785 3.706594 TCACTTGCTTACTGGGATAGGAG 59.293 47.826 0.00 0.00 0.00 3.69
3353 6786 3.719871 TCACTTGCTTACTGGGATAGGA 58.280 45.455 0.00 0.00 0.00 2.94
3354 6787 4.101585 TCATCACTTGCTTACTGGGATAGG 59.898 45.833 0.00 0.00 0.00 2.57
3355 6788 5.282055 TCATCACTTGCTTACTGGGATAG 57.718 43.478 0.00 0.00 0.00 2.08
3356 6789 5.894298 ATCATCACTTGCTTACTGGGATA 57.106 39.130 0.00 0.00 0.00 2.59
3357 6790 4.785346 ATCATCACTTGCTTACTGGGAT 57.215 40.909 0.00 0.00 0.00 3.85
3358 6791 4.574674 AATCATCACTTGCTTACTGGGA 57.425 40.909 0.00 0.00 0.00 4.37
3359 6792 4.701651 TCAAATCATCACTTGCTTACTGGG 59.298 41.667 0.00 0.00 0.00 4.45
3360 6793 5.675575 GCTCAAATCATCACTTGCTTACTGG 60.676 44.000 0.00 0.00 0.00 4.00
3361 6794 5.330295 GCTCAAATCATCACTTGCTTACTG 58.670 41.667 0.00 0.00 0.00 2.74
3362 6795 4.397417 GGCTCAAATCATCACTTGCTTACT 59.603 41.667 0.00 0.00 0.00 2.24
3363 6796 4.397417 AGGCTCAAATCATCACTTGCTTAC 59.603 41.667 0.00 0.00 0.00 2.34
3364 6797 4.592942 AGGCTCAAATCATCACTTGCTTA 58.407 39.130 0.00 0.00 0.00 3.09
3365 6798 3.428532 AGGCTCAAATCATCACTTGCTT 58.571 40.909 0.00 0.00 0.00 3.91
3366 6799 3.083122 AGGCTCAAATCATCACTTGCT 57.917 42.857 0.00 0.00 0.00 3.91
3367 6800 4.970662 TTAGGCTCAAATCATCACTTGC 57.029 40.909 0.00 0.00 0.00 4.01
3368 6801 6.088824 GTGTTTAGGCTCAAATCATCACTTG 58.911 40.000 0.00 0.00 0.00 3.16
3369 6802 5.769662 TGTGTTTAGGCTCAAATCATCACTT 59.230 36.000 0.00 0.00 0.00 3.16
3370 6803 5.316167 TGTGTTTAGGCTCAAATCATCACT 58.684 37.500 0.00 0.00 0.00 3.41
3371 6804 5.627499 TGTGTTTAGGCTCAAATCATCAC 57.373 39.130 0.00 0.00 0.00 3.06
3372 6805 5.048083 GGTTGTGTTTAGGCTCAAATCATCA 60.048 40.000 0.00 0.00 0.00 3.07
3373 6806 5.183904 AGGTTGTGTTTAGGCTCAAATCATC 59.816 40.000 0.00 0.00 0.00 2.92
3374 6807 5.079643 AGGTTGTGTTTAGGCTCAAATCAT 58.920 37.500 0.00 0.00 0.00 2.45
3375 6808 4.469657 AGGTTGTGTTTAGGCTCAAATCA 58.530 39.130 0.00 0.00 0.00 2.57
3376 6809 6.569179 TTAGGTTGTGTTTAGGCTCAAATC 57.431 37.500 0.00 0.00 0.00 2.17
3377 6810 6.239204 GGTTTAGGTTGTGTTTAGGCTCAAAT 60.239 38.462 0.00 0.00 0.00 2.32
3378 6811 5.068067 GGTTTAGGTTGTGTTTAGGCTCAAA 59.932 40.000 0.00 0.00 0.00 2.69
3379 6812 4.581409 GGTTTAGGTTGTGTTTAGGCTCAA 59.419 41.667 0.00 0.00 0.00 3.02
3380 6813 4.139038 GGTTTAGGTTGTGTTTAGGCTCA 58.861 43.478 0.00 0.00 0.00 4.26
3381 6814 4.139038 TGGTTTAGGTTGTGTTTAGGCTC 58.861 43.478 0.00 0.00 0.00 4.70
3382 6815 4.173290 TGGTTTAGGTTGTGTTTAGGCT 57.827 40.909 0.00 0.00 0.00 4.58
3383 6816 6.578163 TTATGGTTTAGGTTGTGTTTAGGC 57.422 37.500 0.00 0.00 0.00 3.93
3384 6817 6.617879 GCTTATGGTTTAGGTTGTGTTTAGG 58.382 40.000 0.00 0.00 0.00 2.69
3385 6818 6.311723 CGCTTATGGTTTAGGTTGTGTTTAG 58.688 40.000 0.00 0.00 0.00 1.85
3386 6819 5.181622 CCGCTTATGGTTTAGGTTGTGTTTA 59.818 40.000 0.00 0.00 0.00 2.01
3387 6820 4.022676 CCGCTTATGGTTTAGGTTGTGTTT 60.023 41.667 0.00 0.00 0.00 2.83
3388 6821 3.504520 CCGCTTATGGTTTAGGTTGTGTT 59.495 43.478 0.00 0.00 0.00 3.32
3389 6822 3.078837 CCGCTTATGGTTTAGGTTGTGT 58.921 45.455 0.00 0.00 0.00 3.72
3390 6823 3.078837 ACCGCTTATGGTTTAGGTTGTG 58.921 45.455 0.00 0.00 39.99 3.33
3391 6824 3.078837 CACCGCTTATGGTTTAGGTTGT 58.921 45.455 0.00 0.00 41.38 3.32
3392 6825 3.340034 TCACCGCTTATGGTTTAGGTTG 58.660 45.455 0.00 0.00 41.38 3.77
3393 6826 3.706600 TCACCGCTTATGGTTTAGGTT 57.293 42.857 0.00 0.00 41.38 3.50
3394 6827 3.926058 ATCACCGCTTATGGTTTAGGT 57.074 42.857 0.00 0.00 41.38 3.08
3395 6828 4.638421 TCAAATCACCGCTTATGGTTTAGG 59.362 41.667 0.00 0.00 41.38 2.69
3396 6829 5.811399 TCAAATCACCGCTTATGGTTTAG 57.189 39.130 0.00 0.00 41.38 1.85
3397 6830 6.767524 AATCAAATCACCGCTTATGGTTTA 57.232 33.333 0.00 0.00 41.38 2.01
3398 6831 5.659440 AATCAAATCACCGCTTATGGTTT 57.341 34.783 0.00 0.00 41.38 3.27
3399 6832 5.659440 AAATCAAATCACCGCTTATGGTT 57.341 34.783 0.00 0.00 41.38 3.67
3400 6833 6.545666 TCATAAATCAAATCACCGCTTATGGT 59.454 34.615 0.00 0.00 45.21 3.55
3401 6834 6.969366 TCATAAATCAAATCACCGCTTATGG 58.031 36.000 0.00 0.00 0.00 2.74
3402 6835 9.546909 GTATCATAAATCAAATCACCGCTTATG 57.453 33.333 0.00 0.00 0.00 1.90
3403 6836 9.283768 TGTATCATAAATCAAATCACCGCTTAT 57.716 29.630 0.00 0.00 0.00 1.73
3404 6837 8.556194 GTGTATCATAAATCAAATCACCGCTTA 58.444 33.333 0.00 0.00 0.00 3.09
3405 6838 7.066887 TGTGTATCATAAATCAAATCACCGCTT 59.933 33.333 0.00 0.00 0.00 4.68
3406 6839 6.542005 TGTGTATCATAAATCAAATCACCGCT 59.458 34.615 0.00 0.00 0.00 5.52
3407 6840 6.724263 TGTGTATCATAAATCAAATCACCGC 58.276 36.000 0.00 0.00 0.00 5.68
3408 6841 8.558700 TGATGTGTATCATAAATCAAATCACCG 58.441 33.333 0.00 0.00 38.37 4.94
3423 6856 9.418839 TCATTTGGGAATAATTGATGTGTATCA 57.581 29.630 0.00 0.00 41.44 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.