Multiple sequence alignment - TraesCS2A01G367700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G367700 chr2A 100.000 3941 0 0 1 3941 611318297 611314357 0.000000e+00 7278.0
1 TraesCS2A01G367700 chr2A 83.159 671 65 26 2306 2944 611746251 611745597 1.590000e-158 569.0
2 TraesCS2A01G367700 chr2A 93.373 166 8 2 1205 1370 611746714 611746552 3.930000e-60 243.0
3 TraesCS2A01G367700 chr2A 83.333 132 17 5 2146 2274 611746483 611746354 2.490000e-22 117.0
4 TraesCS2A01G367700 chr2A 80.000 130 18 6 1574 1701 189159043 189159166 5.420000e-14 89.8
5 TraesCS2A01G367700 chr2D 92.374 1731 85 26 563 2284 470044938 470043246 0.000000e+00 2422.0
6 TraesCS2A01G367700 chr2D 89.231 715 49 22 3236 3938 470042224 470041526 0.000000e+00 869.0
7 TraesCS2A01G367700 chr2D 88.825 698 58 14 1415 2097 470057902 470057210 0.000000e+00 839.0
8 TraesCS2A01G367700 chr2D 94.159 428 14 4 2284 2711 470057031 470056615 3.320000e-180 641.0
9 TraesCS2A01G367700 chr2D 89.200 500 37 7 2712 3210 470042705 470042222 3.370000e-170 608.0
10 TraesCS2A01G367700 chr2D 84.796 638 62 17 2324 2944 470138004 470137385 3.370000e-170 608.0
11 TraesCS2A01G367700 chr2D 93.659 410 16 5 2284 2692 470043208 470042808 4.360000e-169 604.0
12 TraesCS2A01G367700 chr2D 84.891 503 41 18 951 1426 470058415 470057921 3.560000e-130 475.0
13 TraesCS2A01G367700 chr2D 90.805 348 23 4 2712 3059 470056517 470056179 1.290000e-124 457.0
14 TraesCS2A01G367700 chr2D 83.957 374 40 16 1001 1370 470140014 470139657 1.360000e-89 340.0
15 TraesCS2A01G367700 chr2D 95.105 143 3 3 2146 2284 470057211 470057069 5.130000e-54 222.0
16 TraesCS2A01G367700 chr2D 85.246 122 14 4 2155 2274 470139590 470139471 5.350000e-24 122.0
17 TraesCS2A01G367700 chr2B 92.900 831 42 8 2284 3112 548662023 548661208 0.000000e+00 1192.0
18 TraesCS2A01G367700 chr2B 90.724 442 28 6 951 1386 548663128 548662694 9.500000e-161 577.0
19 TraesCS2A01G367700 chr2B 81.791 659 72 20 2306 2944 548911607 548910977 3.510000e-140 508.0
20 TraesCS2A01G367700 chr2B 85.965 399 39 6 563 959 548663551 548663168 1.020000e-110 411.0
21 TraesCS2A01G367700 chr2B 83.166 398 30 17 1001 1370 548912271 548911883 2.940000e-86 329.0
22 TraesCS2A01G367700 chr2B 92.350 183 13 1 2102 2284 548662242 548662061 3.910000e-65 259.0
23 TraesCS2A01G367700 chr2B 79.733 375 59 10 999 1370 571252419 571252779 5.050000e-64 255.0
24 TraesCS2A01G367700 chr2B 88.406 69 7 1 1643 1710 47024118 47024050 9.080000e-12 82.4
25 TraesCS2A01G367700 chr2B 93.023 43 3 0 1668 1710 12004627 12004585 3.290000e-06 63.9
26 TraesCS2A01G367700 chr7B 87.544 570 65 1 1 564 481402400 481401831 0.000000e+00 654.0
27 TraesCS2A01G367700 chr6D 87.671 73 7 1 1636 1706 283813039 283813111 2.520000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G367700 chr2A 611314357 611318297 3940 True 7278.000000 7278 100.000000 1 3941 1 chr2A.!!$R1 3940
1 TraesCS2A01G367700 chr2A 611745597 611746714 1117 True 309.666667 569 86.621667 1205 2944 3 chr2A.!!$R2 1739
2 TraesCS2A01G367700 chr2D 470041526 470044938 3412 True 1125.750000 2422 91.116000 563 3938 4 chr2D.!!$R1 3375
3 TraesCS2A01G367700 chr2D 470056179 470058415 2236 True 526.800000 839 90.757000 951 3059 5 chr2D.!!$R2 2108
4 TraesCS2A01G367700 chr2D 470137385 470140014 2629 True 356.666667 608 84.666333 1001 2944 3 chr2D.!!$R3 1943
5 TraesCS2A01G367700 chr2B 548661208 548663551 2343 True 609.750000 1192 90.484750 563 3112 4 chr2B.!!$R3 2549
6 TraesCS2A01G367700 chr2B 548910977 548912271 1294 True 418.500000 508 82.478500 1001 2944 2 chr2B.!!$R4 1943
7 TraesCS2A01G367700 chr7B 481401831 481402400 569 True 654.000000 654 87.544000 1 564 1 chr7B.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.029267 AATGGCCTCCATCTCCTCCT 60.029 55.0 3.32 0.00 44.4 3.69 F
1151 1210 0.030504 TTCTTCCGTTCGTACGTGCA 59.969 50.0 16.05 0.00 46.2 4.57 F
1153 1212 0.365523 CTTCCGTTCGTACGTGCATG 59.634 55.0 16.05 3.82 46.2 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1470 0.104855 TACGAGCAGGCCATCATCAC 59.895 55.0 5.01 0.0 0.00 3.06 R
2621 4317 0.539986 GGTTGCCTTCGGTCATCCTA 59.460 55.0 0.00 0.0 0.00 2.94 R
2944 4959 0.599991 ACGAAGATGACAGCGTTGCA 60.600 50.0 0.00 0.0 32.42 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.642078 CCTAGACCCATCGCCCAA 58.358 61.111 0.00 0.00 0.00 4.12
18 19 2.145865 CCTAGACCCATCGCCCAAT 58.854 57.895 0.00 0.00 0.00 3.16
19 20 0.250467 CCTAGACCCATCGCCCAATG 60.250 60.000 0.00 0.00 0.00 2.82
20 21 0.886490 CTAGACCCATCGCCCAATGC 60.886 60.000 0.00 0.00 0.00 3.56
21 22 2.337879 TAGACCCATCGCCCAATGCC 62.338 60.000 0.00 0.00 36.24 4.40
24 25 3.891400 CCATCGCCCAATGCCGTG 61.891 66.667 0.00 0.00 36.24 4.94
25 26 3.133464 CATCGCCCAATGCCGTGT 61.133 61.111 0.00 0.00 36.24 4.49
26 27 2.361104 ATCGCCCAATGCCGTGTT 60.361 55.556 0.00 0.00 36.24 3.32
27 28 2.699768 ATCGCCCAATGCCGTGTTG 61.700 57.895 0.00 0.00 36.24 3.33
28 29 3.361158 CGCCCAATGCCGTGTTGA 61.361 61.111 0.00 0.00 36.24 3.18
29 30 2.258286 GCCCAATGCCGTGTTGAC 59.742 61.111 0.00 0.00 0.00 3.18
30 31 2.961768 CCCAATGCCGTGTTGACC 59.038 61.111 0.00 0.00 0.00 4.02
31 32 1.900981 CCCAATGCCGTGTTGACCA 60.901 57.895 0.00 0.00 0.00 4.02
32 33 1.580942 CCAATGCCGTGTTGACCAG 59.419 57.895 0.00 0.00 0.00 4.00
33 34 1.172180 CCAATGCCGTGTTGACCAGT 61.172 55.000 0.00 0.00 0.00 4.00
34 35 0.667993 CAATGCCGTGTTGACCAGTT 59.332 50.000 0.00 0.00 0.00 3.16
35 36 1.066908 CAATGCCGTGTTGACCAGTTT 59.933 47.619 0.00 0.00 0.00 2.66
36 37 0.951558 ATGCCGTGTTGACCAGTTTC 59.048 50.000 0.00 0.00 0.00 2.78
37 38 0.107410 TGCCGTGTTGACCAGTTTCT 60.107 50.000 0.00 0.00 0.00 2.52
38 39 1.021968 GCCGTGTTGACCAGTTTCTT 58.978 50.000 0.00 0.00 0.00 2.52
39 40 1.002792 GCCGTGTTGACCAGTTTCTTC 60.003 52.381 0.00 0.00 0.00 2.87
40 41 1.260561 CCGTGTTGACCAGTTTCTTCG 59.739 52.381 0.00 0.00 0.00 3.79
41 42 1.260561 CGTGTTGACCAGTTTCTTCGG 59.739 52.381 0.00 0.00 0.00 4.30
42 43 2.557317 GTGTTGACCAGTTTCTTCGGA 58.443 47.619 0.00 0.00 0.00 4.55
43 44 2.544267 GTGTTGACCAGTTTCTTCGGAG 59.456 50.000 0.00 0.00 0.00 4.63
44 45 2.143925 GTTGACCAGTTTCTTCGGAGG 58.856 52.381 0.00 0.00 0.00 4.30
45 46 0.034896 TGACCAGTTTCTTCGGAGGC 59.965 55.000 0.00 0.00 0.00 4.70
46 47 0.034896 GACCAGTTTCTTCGGAGGCA 59.965 55.000 0.00 0.00 0.00 4.75
47 48 0.472471 ACCAGTTTCTTCGGAGGCAA 59.528 50.000 0.00 0.00 0.00 4.52
48 49 1.133915 ACCAGTTTCTTCGGAGGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
49 50 1.953686 CCAGTTTCTTCGGAGGCAAAA 59.046 47.619 0.00 0.00 0.00 2.44
50 51 2.287608 CCAGTTTCTTCGGAGGCAAAAC 60.288 50.000 0.00 0.00 0.00 2.43
51 52 2.618709 CAGTTTCTTCGGAGGCAAAACT 59.381 45.455 3.72 3.72 39.94 2.66
52 53 2.618709 AGTTTCTTCGGAGGCAAAACTG 59.381 45.455 7.94 0.00 38.40 3.16
53 54 0.951558 TTCTTCGGAGGCAAAACTGC 59.048 50.000 0.00 0.00 0.00 4.40
57 58 4.944249 GGAGGCAAAACTGCGAAC 57.056 55.556 0.00 0.00 35.24 3.95
58 59 1.082104 GGAGGCAAAACTGCGAACG 60.082 57.895 0.00 0.00 35.24 3.95
59 60 1.082104 GAGGCAAAACTGCGAACGG 60.082 57.895 0.00 0.00 35.24 4.44
60 61 2.729491 GGCAAAACTGCGAACGGC 60.729 61.111 0.00 0.00 43.96 5.68
70 71 3.487202 CGAACGGCGGTGGTGATG 61.487 66.667 13.24 0.00 36.03 3.07
71 72 3.124921 GAACGGCGGTGGTGATGG 61.125 66.667 13.24 0.00 0.00 3.51
75 76 2.755469 GGCGGTGGTGATGGCAAT 60.755 61.111 0.00 0.00 0.00 3.56
76 77 2.774799 GGCGGTGGTGATGGCAATC 61.775 63.158 0.00 0.00 0.00 2.67
77 78 1.750399 GCGGTGGTGATGGCAATCT 60.750 57.895 2.00 0.00 33.61 2.40
78 79 1.718757 GCGGTGGTGATGGCAATCTC 61.719 60.000 2.00 0.00 33.61 2.75
79 80 1.097547 CGGTGGTGATGGCAATCTCC 61.098 60.000 14.31 14.31 43.80 3.71
80 81 1.097547 GGTGGTGATGGCAATCTCCG 61.098 60.000 15.79 0.00 45.62 4.63
81 82 1.097547 GTGGTGATGGCAATCTCCGG 61.098 60.000 15.79 0.00 45.62 5.14
82 83 2.189499 GGTGATGGCAATCTCCGGC 61.189 63.158 6.43 0.00 36.88 6.13
83 84 2.203056 TGATGGCAATCTCCGGCG 60.203 61.111 0.00 0.00 33.61 6.46
84 85 2.108976 GATGGCAATCTCCGGCGA 59.891 61.111 9.30 0.00 0.00 5.54
85 86 1.958205 GATGGCAATCTCCGGCGAG 60.958 63.158 9.30 4.01 37.48 5.03
86 87 2.650813 GATGGCAATCTCCGGCGAGT 62.651 60.000 9.30 0.00 37.40 4.18
87 88 1.399744 ATGGCAATCTCCGGCGAGTA 61.400 55.000 9.30 0.00 37.40 2.59
88 89 1.300233 GGCAATCTCCGGCGAGTAG 60.300 63.158 9.30 2.62 37.40 2.57
104 105 5.470845 CGAGTAGCAACCTCTAAAATTGG 57.529 43.478 0.00 0.00 0.00 3.16
105 106 5.175859 CGAGTAGCAACCTCTAAAATTGGA 58.824 41.667 0.00 0.00 0.00 3.53
106 107 5.642063 CGAGTAGCAACCTCTAAAATTGGAA 59.358 40.000 0.00 0.00 0.00 3.53
107 108 6.316390 CGAGTAGCAACCTCTAAAATTGGAAT 59.684 38.462 0.00 0.00 0.00 3.01
108 109 7.494625 CGAGTAGCAACCTCTAAAATTGGAATA 59.505 37.037 0.00 0.00 0.00 1.75
109 110 9.174166 GAGTAGCAACCTCTAAAATTGGAATAA 57.826 33.333 0.00 0.00 0.00 1.40
110 111 8.957466 AGTAGCAACCTCTAAAATTGGAATAAC 58.043 33.333 0.00 0.00 0.00 1.89
111 112 7.775053 AGCAACCTCTAAAATTGGAATAACA 57.225 32.000 0.00 0.00 0.00 2.41
112 113 8.189119 AGCAACCTCTAAAATTGGAATAACAA 57.811 30.769 0.00 0.00 34.41 2.83
113 114 8.088365 AGCAACCTCTAAAATTGGAATAACAAC 58.912 33.333 0.00 0.00 32.39 3.32
114 115 7.870445 GCAACCTCTAAAATTGGAATAACAACA 59.130 33.333 0.00 0.00 32.39 3.33
115 116 9.410556 CAACCTCTAAAATTGGAATAACAACAG 57.589 33.333 0.00 0.00 32.39 3.16
116 117 7.602753 ACCTCTAAAATTGGAATAACAACAGC 58.397 34.615 0.00 0.00 32.39 4.40
117 118 7.232534 ACCTCTAAAATTGGAATAACAACAGCA 59.767 33.333 0.00 0.00 32.39 4.41
118 119 7.756722 CCTCTAAAATTGGAATAACAACAGCAG 59.243 37.037 0.00 0.00 32.39 4.24
119 120 7.601856 TCTAAAATTGGAATAACAACAGCAGG 58.398 34.615 0.00 0.00 32.39 4.85
120 121 4.806640 AATTGGAATAACAACAGCAGGG 57.193 40.909 0.00 0.00 32.39 4.45
121 122 2.214376 TGGAATAACAACAGCAGGGG 57.786 50.000 0.00 0.00 0.00 4.79
122 123 1.707989 TGGAATAACAACAGCAGGGGA 59.292 47.619 0.00 0.00 0.00 4.81
123 124 2.109128 TGGAATAACAACAGCAGGGGAA 59.891 45.455 0.00 0.00 0.00 3.97
124 125 3.245586 TGGAATAACAACAGCAGGGGAAT 60.246 43.478 0.00 0.00 0.00 3.01
125 126 3.131046 GGAATAACAACAGCAGGGGAATG 59.869 47.826 0.00 0.00 0.00 2.67
126 127 3.737559 ATAACAACAGCAGGGGAATGA 57.262 42.857 0.00 0.00 0.00 2.57
127 128 1.915141 AACAACAGCAGGGGAATGAG 58.085 50.000 0.00 0.00 0.00 2.90
128 129 1.067295 ACAACAGCAGGGGAATGAGA 58.933 50.000 0.00 0.00 0.00 3.27
129 130 1.271597 ACAACAGCAGGGGAATGAGAC 60.272 52.381 0.00 0.00 0.00 3.36
130 131 1.004044 CAACAGCAGGGGAATGAGACT 59.996 52.381 0.00 0.00 0.00 3.24
131 132 1.366319 ACAGCAGGGGAATGAGACTT 58.634 50.000 0.00 0.00 0.00 3.01
132 133 2.551270 ACAGCAGGGGAATGAGACTTA 58.449 47.619 0.00 0.00 0.00 2.24
133 134 2.237392 ACAGCAGGGGAATGAGACTTAC 59.763 50.000 0.00 0.00 0.00 2.34
134 135 2.237143 CAGCAGGGGAATGAGACTTACA 59.763 50.000 0.00 0.00 0.00 2.41
135 136 3.118112 CAGCAGGGGAATGAGACTTACAT 60.118 47.826 0.00 0.00 0.00 2.29
136 137 3.135530 AGCAGGGGAATGAGACTTACATC 59.864 47.826 0.00 0.00 0.00 3.06
137 138 3.745797 GCAGGGGAATGAGACTTACATCC 60.746 52.174 0.00 0.00 0.00 3.51
138 139 2.700897 AGGGGAATGAGACTTACATCCG 59.299 50.000 0.00 0.00 0.00 4.18
139 140 2.224305 GGGGAATGAGACTTACATCCGG 60.224 54.545 0.00 0.00 0.00 5.14
140 141 2.698797 GGGAATGAGACTTACATCCGGA 59.301 50.000 6.61 6.61 0.00 5.14
141 142 3.134081 GGGAATGAGACTTACATCCGGAA 59.866 47.826 9.01 0.00 0.00 4.30
142 143 4.202367 GGGAATGAGACTTACATCCGGAAT 60.202 45.833 9.01 1.67 0.00 3.01
143 144 4.991687 GGAATGAGACTTACATCCGGAATC 59.008 45.833 9.01 0.00 0.00 2.52
144 145 5.453339 GGAATGAGACTTACATCCGGAATCA 60.453 44.000 9.01 3.43 0.00 2.57
145 146 4.655762 TGAGACTTACATCCGGAATCAG 57.344 45.455 9.01 4.90 0.00 2.90
146 147 3.181475 TGAGACTTACATCCGGAATCAGC 60.181 47.826 9.01 0.00 0.00 4.26
147 148 2.103263 AGACTTACATCCGGAATCAGCC 59.897 50.000 9.01 0.00 0.00 4.85
148 149 1.837439 ACTTACATCCGGAATCAGCCA 59.163 47.619 9.01 0.00 0.00 4.75
149 150 2.238646 ACTTACATCCGGAATCAGCCAA 59.761 45.455 9.01 0.00 0.00 4.52
150 151 3.117888 ACTTACATCCGGAATCAGCCAAT 60.118 43.478 9.01 0.00 0.00 3.16
151 152 2.442236 ACATCCGGAATCAGCCAATT 57.558 45.000 9.01 0.00 0.00 2.32
152 153 2.738743 ACATCCGGAATCAGCCAATTT 58.261 42.857 9.01 0.00 0.00 1.82
153 154 2.428171 ACATCCGGAATCAGCCAATTTG 59.572 45.455 9.01 0.00 0.00 2.32
154 155 2.505650 TCCGGAATCAGCCAATTTGA 57.494 45.000 0.00 0.00 0.00 2.69
155 156 2.801483 TCCGGAATCAGCCAATTTGAA 58.199 42.857 0.00 0.00 0.00 2.69
156 157 2.491693 TCCGGAATCAGCCAATTTGAAC 59.508 45.455 0.00 0.00 0.00 3.18
157 158 2.493278 CCGGAATCAGCCAATTTGAACT 59.507 45.455 0.00 0.00 0.00 3.01
158 159 3.428045 CCGGAATCAGCCAATTTGAACTC 60.428 47.826 0.00 0.00 0.00 3.01
159 160 3.428045 CGGAATCAGCCAATTTGAACTCC 60.428 47.826 0.00 2.22 31.86 3.85
160 161 3.511146 GGAATCAGCCAATTTGAACTCCA 59.489 43.478 0.00 0.00 33.79 3.86
161 162 4.161001 GGAATCAGCCAATTTGAACTCCAT 59.839 41.667 0.00 0.00 33.79 3.41
162 163 4.996788 ATCAGCCAATTTGAACTCCATC 57.003 40.909 0.00 0.00 0.00 3.51
163 164 3.765381 TCAGCCAATTTGAACTCCATCA 58.235 40.909 0.00 0.00 0.00 3.07
164 165 3.760151 TCAGCCAATTTGAACTCCATCAG 59.240 43.478 0.00 0.00 0.00 2.90
165 166 2.494870 AGCCAATTTGAACTCCATCAGC 59.505 45.455 0.00 0.00 0.00 4.26
166 167 2.733227 GCCAATTTGAACTCCATCAGCG 60.733 50.000 0.00 0.00 0.00 5.18
167 168 2.523015 CAATTTGAACTCCATCAGCGC 58.477 47.619 0.00 0.00 0.00 5.92
168 169 0.729116 ATTTGAACTCCATCAGCGCG 59.271 50.000 0.00 0.00 0.00 6.86
169 170 0.602638 TTTGAACTCCATCAGCGCGT 60.603 50.000 8.43 0.00 0.00 6.01
170 171 0.602638 TTGAACTCCATCAGCGCGTT 60.603 50.000 8.43 0.00 0.00 4.84
171 172 1.291184 TGAACTCCATCAGCGCGTTG 61.291 55.000 17.58 17.58 0.00 4.10
172 173 2.568935 GAACTCCATCAGCGCGTTGC 62.569 60.000 18.88 0.00 46.98 4.17
182 183 3.124921 CGCGTTGCCCTTCGGAAT 61.125 61.111 0.00 0.00 0.00 3.01
183 184 2.485122 GCGTTGCCCTTCGGAATG 59.515 61.111 0.00 0.00 0.00 2.67
184 185 3.051392 GCGTTGCCCTTCGGAATGG 62.051 63.158 7.60 7.60 0.00 3.16
185 186 2.885113 GTTGCCCTTCGGAATGGC 59.115 61.111 24.71 24.71 45.56 4.40
186 187 2.362375 TTGCCCTTCGGAATGGCC 60.362 61.111 27.18 14.16 44.72 5.36
187 188 2.917897 TTGCCCTTCGGAATGGCCT 61.918 57.895 27.18 0.00 44.72 5.19
188 189 2.517166 GCCCTTCGGAATGGCCTC 60.517 66.667 22.03 0.00 39.30 4.70
189 190 2.193248 CCCTTCGGAATGGCCTCC 59.807 66.667 3.32 1.80 0.00 4.30
190 191 2.679342 CCCTTCGGAATGGCCTCCA 61.679 63.158 11.40 0.00 38.19 3.86
192 193 0.536006 CCTTCGGAATGGCCTCCATC 60.536 60.000 11.40 1.00 44.40 3.51
193 194 0.471617 CTTCGGAATGGCCTCCATCT 59.528 55.000 11.40 0.00 44.40 2.90
194 195 0.469917 TTCGGAATGGCCTCCATCTC 59.530 55.000 11.40 0.39 44.40 2.75
195 196 1.072159 CGGAATGGCCTCCATCTCC 59.928 63.158 11.40 7.61 44.40 3.71
196 197 1.414061 CGGAATGGCCTCCATCTCCT 61.414 60.000 11.40 0.00 44.40 3.69
197 198 0.399833 GGAATGGCCTCCATCTCCTC 59.600 60.000 3.32 4.28 44.40 3.71
198 199 0.399833 GAATGGCCTCCATCTCCTCC 59.600 60.000 3.32 0.00 44.40 4.30
199 200 0.029267 AATGGCCTCCATCTCCTCCT 60.029 55.000 3.32 0.00 44.40 3.69
200 201 0.473501 ATGGCCTCCATCTCCTCCTC 60.474 60.000 3.32 0.00 40.74 3.71
201 202 1.235696 GGCCTCCATCTCCTCCTCT 59.764 63.158 0.00 0.00 0.00 3.69
202 203 1.120795 GGCCTCCATCTCCTCCTCTG 61.121 65.000 0.00 0.00 0.00 3.35
203 204 0.398381 GCCTCCATCTCCTCCTCTGT 60.398 60.000 0.00 0.00 0.00 3.41
204 205 1.969240 GCCTCCATCTCCTCCTCTGTT 60.969 57.143 0.00 0.00 0.00 3.16
205 206 1.761784 CCTCCATCTCCTCCTCTGTTG 59.238 57.143 0.00 0.00 0.00 3.33
206 207 2.465813 CTCCATCTCCTCCTCTGTTGT 58.534 52.381 0.00 0.00 0.00 3.32
207 208 2.430332 CTCCATCTCCTCCTCTGTTGTC 59.570 54.545 0.00 0.00 0.00 3.18
208 209 2.043664 TCCATCTCCTCCTCTGTTGTCT 59.956 50.000 0.00 0.00 0.00 3.41
209 210 2.430332 CCATCTCCTCCTCTGTTGTCTC 59.570 54.545 0.00 0.00 0.00 3.36
210 211 1.827681 TCTCCTCCTCTGTTGTCTCG 58.172 55.000 0.00 0.00 0.00 4.04
211 212 1.351350 TCTCCTCCTCTGTTGTCTCGA 59.649 52.381 0.00 0.00 0.00 4.04
212 213 2.025793 TCTCCTCCTCTGTTGTCTCGAT 60.026 50.000 0.00 0.00 0.00 3.59
213 214 2.095461 TCCTCCTCTGTTGTCTCGATG 58.905 52.381 0.00 0.00 0.00 3.84
214 215 1.821753 CCTCCTCTGTTGTCTCGATGT 59.178 52.381 0.00 0.00 0.00 3.06
215 216 2.416566 CCTCCTCTGTTGTCTCGATGTG 60.417 54.545 0.00 0.00 0.00 3.21
216 217 1.546029 TCCTCTGTTGTCTCGATGTGG 59.454 52.381 0.00 0.00 0.00 4.17
217 218 1.546029 CCTCTGTTGTCTCGATGTGGA 59.454 52.381 0.00 0.00 0.00 4.02
218 219 2.416566 CCTCTGTTGTCTCGATGTGGAG 60.417 54.545 0.00 0.00 35.32 3.86
219 220 1.546029 TCTGTTGTCTCGATGTGGAGG 59.454 52.381 0.00 0.00 34.74 4.30
220 221 1.273606 CTGTTGTCTCGATGTGGAGGT 59.726 52.381 0.00 0.00 34.74 3.85
221 222 1.272490 TGTTGTCTCGATGTGGAGGTC 59.728 52.381 0.00 0.00 34.74 3.85
222 223 0.526211 TTGTCTCGATGTGGAGGTCG 59.474 55.000 0.00 0.00 39.11 4.79
223 224 1.226717 GTCTCGATGTGGAGGTCGC 60.227 63.158 0.00 0.00 37.74 5.19
224 225 2.105128 CTCGATGTGGAGGTCGCC 59.895 66.667 0.00 0.00 37.74 5.54
225 226 2.362503 TCGATGTGGAGGTCGCCT 60.363 61.111 0.00 0.00 37.74 5.52
233 234 3.551407 GAGGTCGCCTCCCCATCC 61.551 72.222 13.12 0.00 44.36 3.51
241 242 4.181010 CTCCCCATCCGCCCACTG 62.181 72.222 0.00 0.00 0.00 3.66
245 246 4.100084 CCATCCGCCCACTGCAGA 62.100 66.667 23.35 0.00 41.33 4.26
246 247 2.046023 CATCCGCCCACTGCAGAA 60.046 61.111 23.35 0.00 41.33 3.02
247 248 1.452651 CATCCGCCCACTGCAGAAT 60.453 57.895 23.35 0.00 41.33 2.40
248 249 1.153086 ATCCGCCCACTGCAGAATC 60.153 57.895 23.35 5.37 41.33 2.52
249 250 1.913951 ATCCGCCCACTGCAGAATCA 61.914 55.000 23.35 0.00 41.33 2.57
250 251 1.675310 CCGCCCACTGCAGAATCAA 60.675 57.895 23.35 0.00 41.33 2.57
251 252 1.651240 CCGCCCACTGCAGAATCAAG 61.651 60.000 23.35 6.79 41.33 3.02
252 253 1.651240 CGCCCACTGCAGAATCAAGG 61.651 60.000 23.35 11.84 41.33 3.61
253 254 1.941999 GCCCACTGCAGAATCAAGGC 61.942 60.000 23.35 17.52 40.77 4.35
254 255 0.609957 CCCACTGCAGAATCAAGGCA 60.610 55.000 23.35 0.00 35.96 4.75
255 256 1.250328 CCACTGCAGAATCAAGGCAA 58.750 50.000 23.35 0.00 37.06 4.52
256 257 1.201647 CCACTGCAGAATCAAGGCAAG 59.798 52.381 23.35 0.00 37.06 4.01
257 258 1.201647 CACTGCAGAATCAAGGCAAGG 59.798 52.381 23.35 0.00 37.06 3.61
258 259 0.815734 CTGCAGAATCAAGGCAAGGG 59.184 55.000 8.42 0.00 37.06 3.95
259 260 0.405198 TGCAGAATCAAGGCAAGGGA 59.595 50.000 0.00 0.00 34.05 4.20
260 261 1.101331 GCAGAATCAAGGCAAGGGAG 58.899 55.000 0.00 0.00 0.00 4.30
261 262 1.340405 GCAGAATCAAGGCAAGGGAGA 60.340 52.381 0.00 0.00 0.00 3.71
262 263 2.641305 CAGAATCAAGGCAAGGGAGAG 58.359 52.381 0.00 0.00 0.00 3.20
263 264 1.064832 AGAATCAAGGCAAGGGAGAGC 60.065 52.381 0.00 0.00 0.00 4.09
264 265 0.998145 AATCAAGGCAAGGGAGAGCT 59.002 50.000 0.00 0.00 0.00 4.09
265 266 0.545646 ATCAAGGCAAGGGAGAGCTC 59.454 55.000 5.27 5.27 0.00 4.09
275 276 3.934962 GAGAGCTCCCGCCCCATC 61.935 72.222 10.93 0.00 36.60 3.51
280 281 4.794648 CTCCCGCCCCATCGCAAA 62.795 66.667 0.00 0.00 0.00 3.68
281 282 4.794648 TCCCGCCCCATCGCAAAG 62.795 66.667 0.00 0.00 0.00 2.77
282 283 4.794648 CCCGCCCCATCGCAAAGA 62.795 66.667 0.00 0.00 0.00 2.52
283 284 2.516930 CCGCCCCATCGCAAAGAT 60.517 61.111 0.00 0.00 41.01 2.40
291 292 3.393472 ATCGCAAAGATGGAGGCTC 57.607 52.632 5.78 5.78 38.36 4.70
292 293 0.531532 ATCGCAAAGATGGAGGCTCG 60.532 55.000 8.69 0.00 38.36 5.03
293 294 2.817423 CGCAAAGATGGAGGCTCGC 61.817 63.158 8.69 3.30 0.00 5.03
294 295 1.451028 GCAAAGATGGAGGCTCGCT 60.451 57.895 8.69 2.85 0.00 4.93
295 296 1.435408 GCAAAGATGGAGGCTCGCTC 61.435 60.000 8.69 7.59 0.00 5.03
296 297 0.177604 CAAAGATGGAGGCTCGCTCT 59.822 55.000 8.69 9.84 0.00 4.09
297 298 1.410517 CAAAGATGGAGGCTCGCTCTA 59.589 52.381 15.28 0.00 0.00 2.43
298 299 1.327303 AAGATGGAGGCTCGCTCTAG 58.673 55.000 15.28 0.00 0.00 2.43
299 300 1.178534 AGATGGAGGCTCGCTCTAGC 61.179 60.000 13.83 0.00 41.99 3.42
300 301 1.152567 ATGGAGGCTCGCTCTAGCT 60.153 57.895 8.69 0.00 42.37 3.32
301 302 1.178534 ATGGAGGCTCGCTCTAGCTC 61.179 60.000 8.69 0.00 42.37 4.09
302 303 2.561037 GGAGGCTCGCTCTAGCTCC 61.561 68.421 8.69 0.00 42.37 4.70
303 304 2.903547 GAGGCTCGCTCTAGCTCCG 61.904 68.421 0.00 0.00 42.37 4.63
304 305 3.213402 GGCTCGCTCTAGCTCCGT 61.213 66.667 0.00 0.00 42.37 4.69
305 306 2.025441 GCTCGCTCTAGCTCCGTG 59.975 66.667 0.00 0.00 39.50 4.94
306 307 2.718731 CTCGCTCTAGCTCCGTGG 59.281 66.667 0.00 0.00 39.32 4.94
307 308 2.045242 TCGCTCTAGCTCCGTGGT 60.045 61.111 0.00 0.00 39.32 4.16
308 309 2.103143 CGCTCTAGCTCCGTGGTG 59.897 66.667 0.00 0.00 39.32 4.17
309 310 2.701780 CGCTCTAGCTCCGTGGTGT 61.702 63.158 0.00 0.00 39.32 4.16
310 311 1.592223 GCTCTAGCTCCGTGGTGTT 59.408 57.895 0.00 0.00 38.21 3.32
311 312 0.458716 GCTCTAGCTCCGTGGTGTTC 60.459 60.000 0.00 0.00 38.21 3.18
312 313 0.179161 CTCTAGCTCCGTGGTGTTCG 60.179 60.000 0.00 0.00 0.00 3.95
313 314 1.805945 CTAGCTCCGTGGTGTTCGC 60.806 63.158 0.00 0.00 0.00 4.70
314 315 3.291101 TAGCTCCGTGGTGTTCGCC 62.291 63.158 0.00 0.00 0.00 5.54
315 316 4.980805 GCTCCGTGGTGTTCGCCA 62.981 66.667 0.58 0.58 35.93 5.69
316 317 2.047274 CTCCGTGGTGTTCGCCAT 60.047 61.111 8.35 0.00 41.08 4.40
317 318 1.671054 CTCCGTGGTGTTCGCCATT 60.671 57.895 8.35 0.00 41.08 3.16
318 319 1.911293 CTCCGTGGTGTTCGCCATTG 61.911 60.000 8.35 4.82 41.08 2.82
319 320 2.126888 CGTGGTGTTCGCCATTGC 60.127 61.111 8.35 0.00 41.08 3.56
320 321 2.258286 GTGGTGTTCGCCATTGCC 59.742 61.111 8.35 0.00 41.08 4.52
321 322 2.988684 TGGTGTTCGCCATTGCCC 60.989 61.111 0.58 0.00 32.81 5.36
322 323 4.114997 GGTGTTCGCCATTGCCCG 62.115 66.667 0.00 0.00 0.00 6.13
323 324 4.776647 GTGTTCGCCATTGCCCGC 62.777 66.667 0.00 0.00 0.00 6.13
325 326 4.481112 GTTCGCCATTGCCCGCAG 62.481 66.667 0.00 0.00 0.00 5.18
339 340 4.024698 GCAGCGCGAGATTCATCT 57.975 55.556 12.10 0.00 40.50 2.90
340 341 2.305405 GCAGCGCGAGATTCATCTT 58.695 52.632 12.10 0.00 37.25 2.40
341 342 0.231790 GCAGCGCGAGATTCATCTTC 59.768 55.000 12.10 0.00 37.25 2.87
342 343 0.501854 CAGCGCGAGATTCATCTTCG 59.498 55.000 12.10 7.60 37.25 3.79
343 344 1.200348 GCGCGAGATTCATCTTCGC 59.800 57.895 12.10 16.35 44.85 4.70
344 345 1.849306 CGCGAGATTCATCTTCGCC 59.151 57.895 19.15 8.87 43.64 5.54
345 346 0.871592 CGCGAGATTCATCTTCGCCA 60.872 55.000 19.15 0.00 43.64 5.69
346 347 0.579156 GCGAGATTCATCTTCGCCAC 59.421 55.000 16.40 0.00 42.26 5.01
347 348 1.926561 CGAGATTCATCTTCGCCACA 58.073 50.000 0.00 0.00 37.25 4.17
348 349 1.857217 CGAGATTCATCTTCGCCACAG 59.143 52.381 0.00 0.00 37.25 3.66
349 350 1.596727 GAGATTCATCTTCGCCACAGC 59.403 52.381 0.00 0.00 37.25 4.40
350 351 0.659957 GATTCATCTTCGCCACAGCC 59.340 55.000 0.00 0.00 34.57 4.85
351 352 0.035152 ATTCATCTTCGCCACAGCCA 60.035 50.000 0.00 0.00 34.57 4.75
352 353 0.674581 TTCATCTTCGCCACAGCCAG 60.675 55.000 0.00 0.00 34.57 4.85
353 354 2.437359 ATCTTCGCCACAGCCAGC 60.437 61.111 0.00 0.00 34.57 4.85
362 363 4.996434 ACAGCCAGCGCCTGTGTC 62.996 66.667 15.66 0.00 34.57 3.67
390 391 4.514577 CCGCCCTTGTCGCTCGAT 62.515 66.667 0.00 0.00 0.00 3.59
391 392 2.956964 CGCCCTTGTCGCTCGATC 60.957 66.667 0.00 0.00 0.00 3.69
392 393 2.586357 GCCCTTGTCGCTCGATCC 60.586 66.667 0.00 0.00 0.00 3.36
393 394 2.278857 CCCTTGTCGCTCGATCCG 60.279 66.667 0.00 0.00 0.00 4.18
394 395 2.956964 CCTTGTCGCTCGATCCGC 60.957 66.667 0.00 0.00 0.00 5.54
395 396 2.956964 CTTGTCGCTCGATCCGCC 60.957 66.667 0.00 0.00 0.00 6.13
396 397 4.847516 TTGTCGCTCGATCCGCCG 62.848 66.667 0.00 0.00 0.00 6.46
411 412 4.544689 CCGCACGCTCTCTCCGAG 62.545 72.222 0.00 0.00 42.88 4.63
418 419 3.520402 CTCTCTCCGAGCCACCTC 58.480 66.667 0.00 0.00 31.99 3.85
419 420 2.043852 TCTCTCCGAGCCACCTCC 60.044 66.667 0.00 0.00 34.49 4.30
420 421 3.522731 CTCTCCGAGCCACCTCCG 61.523 72.222 0.00 0.00 34.49 4.63
441 442 3.917760 GCAGCCGGCGTATCTCCT 61.918 66.667 23.20 0.00 0.00 3.69
442 443 2.028190 CAGCCGGCGTATCTCCTG 59.972 66.667 23.20 7.30 0.00 3.86
443 444 2.123854 AGCCGGCGTATCTCCTGA 60.124 61.111 23.20 0.00 0.00 3.86
444 445 1.531840 AGCCGGCGTATCTCCTGAT 60.532 57.895 23.20 0.00 36.74 2.90
445 446 1.080434 GCCGGCGTATCTCCTGATC 60.080 63.158 12.58 0.00 34.32 2.92
446 447 1.587054 CCGGCGTATCTCCTGATCC 59.413 63.158 6.01 0.00 34.32 3.36
447 448 1.210413 CGGCGTATCTCCTGATCCG 59.790 63.158 0.00 0.00 35.54 4.18
450 451 1.210413 CGTATCTCCTGATCCGCCG 59.790 63.158 0.00 0.00 34.32 6.46
451 452 1.080434 GTATCTCCTGATCCGCCGC 60.080 63.158 0.00 0.00 34.32 6.53
452 453 1.530655 TATCTCCTGATCCGCCGCA 60.531 57.895 0.00 0.00 34.32 5.69
453 454 1.527433 TATCTCCTGATCCGCCGCAG 61.527 60.000 0.00 0.00 34.32 5.18
459 460 4.537433 GATCCGCCGCAGCTCCTT 62.537 66.667 0.00 0.00 36.60 3.36
460 461 4.537433 ATCCGCCGCAGCTCCTTC 62.537 66.667 0.00 0.00 36.60 3.46
464 465 3.780173 GCCGCAGCTCCTTCTCCT 61.780 66.667 0.00 0.00 35.50 3.69
465 466 2.498726 CCGCAGCTCCTTCTCCTC 59.501 66.667 0.00 0.00 0.00 3.71
466 467 2.498726 CGCAGCTCCTTCTCCTCC 59.501 66.667 0.00 0.00 0.00 4.30
467 468 2.354401 CGCAGCTCCTTCTCCTCCA 61.354 63.158 0.00 0.00 0.00 3.86
468 469 1.684386 CGCAGCTCCTTCTCCTCCAT 61.684 60.000 0.00 0.00 0.00 3.41
469 470 0.106521 GCAGCTCCTTCTCCTCCATC 59.893 60.000 0.00 0.00 0.00 3.51
470 471 0.758123 CAGCTCCTTCTCCTCCATCC 59.242 60.000 0.00 0.00 0.00 3.51
471 472 0.341258 AGCTCCTTCTCCTCCATCCA 59.659 55.000 0.00 0.00 0.00 3.41
472 473 1.061502 AGCTCCTTCTCCTCCATCCAT 60.062 52.381 0.00 0.00 0.00 3.41
473 474 1.347378 GCTCCTTCTCCTCCATCCATC 59.653 57.143 0.00 0.00 0.00 3.51
474 475 2.687297 CTCCTTCTCCTCCATCCATCA 58.313 52.381 0.00 0.00 0.00 3.07
475 476 2.633967 CTCCTTCTCCTCCATCCATCAG 59.366 54.545 0.00 0.00 0.00 2.90
476 477 1.072015 CCTTCTCCTCCATCCATCAGC 59.928 57.143 0.00 0.00 0.00 4.26
477 478 1.767088 CTTCTCCTCCATCCATCAGCA 59.233 52.381 0.00 0.00 0.00 4.41
478 479 1.421480 TCTCCTCCATCCATCAGCAG 58.579 55.000 0.00 0.00 0.00 4.24
479 480 1.062658 TCTCCTCCATCCATCAGCAGA 60.063 52.381 0.00 0.00 0.00 4.26
480 481 1.979308 CTCCTCCATCCATCAGCAGAT 59.021 52.381 0.00 0.00 33.87 2.90
481 482 1.976404 TCCTCCATCCATCAGCAGATC 59.024 52.381 0.00 0.00 30.20 2.75
482 483 1.979308 CCTCCATCCATCAGCAGATCT 59.021 52.381 0.00 0.00 30.20 2.75
483 484 2.289756 CCTCCATCCATCAGCAGATCTG 60.290 54.545 18.84 18.84 44.21 2.90
492 493 3.834489 TCAGCAGATCTGAGGATTTCC 57.166 47.619 27.04 5.77 46.34 3.13
493 494 3.109928 TCAGCAGATCTGAGGATTTCCA 58.890 45.455 27.04 0.00 46.34 3.53
494 495 3.118482 TCAGCAGATCTGAGGATTTCCAC 60.118 47.826 27.04 4.27 46.34 4.02
495 496 2.172293 AGCAGATCTGAGGATTTCCACC 59.828 50.000 27.04 3.75 38.89 4.61
496 497 2.831333 CAGATCTGAGGATTTCCACCG 58.169 52.381 18.34 0.00 38.89 4.94
497 498 1.139853 AGATCTGAGGATTTCCACCGC 59.860 52.381 0.00 0.00 38.89 5.68
498 499 0.181350 ATCTGAGGATTTCCACCGCC 59.819 55.000 0.00 0.00 38.89 6.13
499 500 1.452108 CTGAGGATTTCCACCGCCC 60.452 63.158 0.00 0.00 38.89 6.13
500 501 2.124278 GAGGATTTCCACCGCCCC 60.124 66.667 0.00 0.00 38.89 5.80
501 502 3.716204 GAGGATTTCCACCGCCCCC 62.716 68.421 0.00 0.00 38.89 5.40
515 516 3.839432 CCCCCGACTCTCCGCTTC 61.839 72.222 0.00 0.00 0.00 3.86
516 517 4.194720 CCCCGACTCTCCGCTTCG 62.195 72.222 0.00 0.00 0.00 3.79
517 518 3.441290 CCCGACTCTCCGCTTCGT 61.441 66.667 0.00 0.00 0.00 3.85
518 519 2.100603 CCGACTCTCCGCTTCGTC 59.899 66.667 0.00 0.00 0.00 4.20
519 520 2.400158 CCGACTCTCCGCTTCGTCT 61.400 63.158 0.00 0.00 0.00 4.18
520 521 1.226156 CGACTCTCCGCTTCGTCTG 60.226 63.158 0.00 0.00 0.00 3.51
521 522 1.137825 GACTCTCCGCTTCGTCTGG 59.862 63.158 0.00 0.00 0.00 3.86
522 523 1.303398 ACTCTCCGCTTCGTCTGGA 60.303 57.895 0.00 0.00 0.00 3.86
523 524 0.681564 ACTCTCCGCTTCGTCTGGAT 60.682 55.000 0.00 0.00 0.00 3.41
524 525 0.248825 CTCTCCGCTTCGTCTGGATG 60.249 60.000 0.00 0.00 0.00 3.51
525 526 0.679960 TCTCCGCTTCGTCTGGATGA 60.680 55.000 0.00 0.00 0.00 2.92
526 527 0.173481 CTCCGCTTCGTCTGGATGAA 59.827 55.000 5.32 5.32 35.28 2.57
527 528 0.824109 TCCGCTTCGTCTGGATGAAT 59.176 50.000 5.81 0.00 35.94 2.57
528 529 1.202417 TCCGCTTCGTCTGGATGAATC 60.202 52.381 5.81 1.94 35.94 2.52
529 530 0.848942 CGCTTCGTCTGGATGAATCG 59.151 55.000 12.20 12.20 38.83 3.34
530 531 0.579156 GCTTCGTCTGGATGAATCGC 59.421 55.000 5.81 4.04 35.94 4.58
531 532 1.212616 CTTCGTCTGGATGAATCGCC 58.787 55.000 5.81 0.00 35.94 5.54
532 533 0.534873 TTCGTCTGGATGAATCGCCA 59.465 50.000 1.58 0.00 31.88 5.69
533 534 0.179111 TCGTCTGGATGAATCGCCAC 60.179 55.000 0.00 0.00 0.00 5.01
534 535 1.154205 CGTCTGGATGAATCGCCACC 61.154 60.000 0.00 0.00 0.00 4.61
535 536 1.143838 TCTGGATGAATCGCCACCG 59.856 57.895 0.00 0.00 0.00 4.94
536 537 1.153369 CTGGATGAATCGCCACCGT 60.153 57.895 0.00 0.00 35.54 4.83
537 538 1.153449 TGGATGAATCGCCACCGTC 60.153 57.895 0.00 0.00 35.54 4.79
538 539 1.153449 GGATGAATCGCCACCGTCA 60.153 57.895 0.00 0.00 35.54 4.35
539 540 0.742990 GGATGAATCGCCACCGTCAA 60.743 55.000 0.00 0.00 35.54 3.18
540 541 1.083489 GATGAATCGCCACCGTCAAA 58.917 50.000 0.00 0.00 35.54 2.69
541 542 0.802494 ATGAATCGCCACCGTCAAAC 59.198 50.000 0.00 0.00 35.54 2.93
542 543 1.231958 TGAATCGCCACCGTCAAACC 61.232 55.000 0.00 0.00 35.54 3.27
543 544 1.918868 GAATCGCCACCGTCAAACCC 61.919 60.000 0.00 0.00 35.54 4.11
544 545 4.973055 TCGCCACCGTCAAACCCG 62.973 66.667 0.00 0.00 35.54 5.28
547 548 3.656045 CCACCGTCAAACCCGCAC 61.656 66.667 0.00 0.00 0.00 5.34
548 549 2.590575 CACCGTCAAACCCGCACT 60.591 61.111 0.00 0.00 0.00 4.40
549 550 1.301087 CACCGTCAAACCCGCACTA 60.301 57.895 0.00 0.00 0.00 2.74
550 551 1.005394 ACCGTCAAACCCGCACTAG 60.005 57.895 0.00 0.00 0.00 2.57
551 552 2.388232 CCGTCAAACCCGCACTAGC 61.388 63.158 0.00 0.00 37.42 3.42
561 562 3.251043 GCACTAGCGCGAGTCTGC 61.251 66.667 20.90 17.72 0.00 4.26
610 612 7.126726 AGAAATGCGCATCTAATTCTGTATC 57.873 36.000 26.31 7.49 0.00 2.24
692 695 2.483877 TGTCAAGCAGATTAACCGCAAG 59.516 45.455 0.00 0.00 0.00 4.01
736 739 0.457035 GATGGTACCGTACGGCTCAA 59.543 55.000 33.62 20.12 39.32 3.02
737 740 1.068127 GATGGTACCGTACGGCTCAAT 59.932 52.381 33.62 23.68 39.32 2.57
742 745 0.968901 ACCGTACGGCTCAATCCTCA 60.969 55.000 33.62 0.00 39.32 3.86
846 849 1.154225 CGGTGCCAAATCACGAAGC 60.154 57.895 0.00 0.00 37.83 3.86
895 898 0.667792 ACTTTCACTTCTCGCTCGCC 60.668 55.000 0.00 0.00 0.00 5.54
999 1049 2.665185 ACGCGCACAGAGGGTTTC 60.665 61.111 5.73 0.00 0.00 2.78
1151 1210 0.030504 TTCTTCCGTTCGTACGTGCA 59.969 50.000 16.05 0.00 46.20 4.57
1153 1212 0.365523 CTTCCGTTCGTACGTGCATG 59.634 55.000 16.05 3.82 46.20 4.06
1156 1232 0.456482 CCGTTCGTACGTGCATGGTA 60.456 55.000 16.05 3.62 46.20 3.25
1175 1251 2.283145 AGTTTCATCAGCAAGGCAGT 57.717 45.000 0.00 0.00 0.00 4.40
1178 1254 3.503748 AGTTTCATCAGCAAGGCAGTAAC 59.496 43.478 0.00 0.00 0.00 2.50
1179 1255 3.423539 TTCATCAGCAAGGCAGTAACT 57.576 42.857 0.00 0.00 0.00 2.24
1181 1257 4.128925 TCATCAGCAAGGCAGTAACTAG 57.871 45.455 0.00 0.00 0.00 2.57
1184 1261 4.720649 TCAGCAAGGCAGTAACTAGTAG 57.279 45.455 0.00 0.00 0.00 2.57
1199 1276 5.537300 ACTAGTAGTAACAGGCATGGATG 57.463 43.478 2.31 0.00 0.00 3.51
1389 1466 8.504005 GGAGGTATGTATTTGTATATGTTGCAC 58.496 37.037 0.00 0.00 0.00 4.57
1393 1470 6.112994 TGTATTTGTATATGTTGCACGGTG 57.887 37.500 3.15 3.15 0.00 4.94
1394 1471 5.644206 TGTATTTGTATATGTTGCACGGTGT 59.356 36.000 10.24 0.00 0.00 4.16
1395 1472 4.411993 TTTGTATATGTTGCACGGTGTG 57.588 40.909 10.24 0.00 36.51 3.82
1407 1484 2.475466 CGGTGTGATGATGGCCTGC 61.475 63.158 3.32 0.00 0.00 4.85
1430 1537 5.509622 GCTCGTAAAATTCATGTGAAGAAGC 59.490 40.000 1.65 0.19 37.48 3.86
1505 1621 7.382218 CCAGAAGCTATCAAAAATTCAAAACGT 59.618 33.333 0.00 0.00 0.00 3.99
1525 1641 3.732212 GTACTTTGTTTCGGTACACCCT 58.268 45.455 0.00 0.00 36.71 4.34
1534 1650 3.967332 TCGGTACACCCTCCTTAAAAG 57.033 47.619 0.00 0.00 0.00 2.27
1540 1656 6.405176 CGGTACACCCTCCTTAAAAGTAGTAG 60.405 46.154 0.00 0.00 0.00 2.57
1541 1657 6.438741 GGTACACCCTCCTTAAAAGTAGTAGT 59.561 42.308 0.00 0.00 0.00 2.73
1545 1661 9.418839 ACACCCTCCTTAAAAGTAGTAGTATAG 57.581 37.037 0.00 0.00 0.00 1.31
1546 1662 9.638176 CACCCTCCTTAAAAGTAGTAGTATAGA 57.362 37.037 0.00 0.00 0.00 1.98
1547 1663 9.865152 ACCCTCCTTAAAAGTAGTAGTATAGAG 57.135 37.037 0.00 0.00 0.00 2.43
1548 1664 8.795513 CCCTCCTTAAAAGTAGTAGTATAGAGC 58.204 40.741 0.00 0.00 0.00 4.09
1879 2093 8.801715 AAAACACAAACATGCTAATTCAGTAG 57.198 30.769 0.00 0.00 0.00 2.57
2046 2260 8.385858 GTGACGGAAATTAGTGAGTTATTAACC 58.614 37.037 2.92 0.00 0.00 2.85
2081 2295 7.655328 AGAGTAGTGTGAAATATGCATAGCTTC 59.345 37.037 12.79 16.10 0.00 3.86
2084 2298 6.118170 AGTGTGAAATATGCATAGCTTCAGT 58.882 36.000 24.16 14.42 0.00 3.41
2089 2303 6.769341 TGAAATATGCATAGCTTCAGTGACAT 59.231 34.615 21.57 0.00 0.00 3.06
2321 2620 4.655649 TCAGCAGGCTCTTATTCATCCTTA 59.344 41.667 0.00 0.00 0.00 2.69
2483 4167 9.392259 ACTTGCTTACTACTAGTTCAAAACTTT 57.608 29.630 0.00 0.00 42.81 2.66
2723 4565 4.932200 GCAGTTTACTTAGCAGTCAGTGAT 59.068 41.667 0.00 0.00 34.06 3.06
2726 4568 2.393271 ACTTAGCAGTCAGTGATGCC 57.607 50.000 18.17 0.00 43.60 4.40
2738 4580 2.029739 CAGTGATGCCAAATGAACTGCA 60.030 45.455 0.00 0.00 38.23 4.41
2762 4604 3.472652 AGCGTTGTTCCACTCATGTTTA 58.527 40.909 0.00 0.00 0.00 2.01
2772 4614 3.438087 CCACTCATGTTTAGCCTGAACTG 59.562 47.826 0.84 0.00 0.00 3.16
2783 4627 3.866651 AGCCTGAACTGATATGTGTGTC 58.133 45.455 0.00 0.00 0.00 3.67
2829 4673 0.032815 TACTGCTGTACGTGCTTGCA 59.967 50.000 18.98 18.98 0.00 4.08
2944 4959 1.341531 ACGACAAGCAGCACTAGAGTT 59.658 47.619 0.00 0.00 0.00 3.01
2969 4984 2.159503 ACGCTGTCATCTTCGTGAGTAG 60.160 50.000 0.00 0.00 33.59 2.57
2970 4985 2.792890 CGCTGTCATCTTCGTGAGTAGG 60.793 54.545 0.00 0.00 0.00 3.18
3004 5019 4.848660 AGATGGATTACCTCATGTATGCCT 59.151 41.667 0.00 0.00 37.04 4.75
3005 5020 6.025539 AGATGGATTACCTCATGTATGCCTA 58.974 40.000 0.00 0.00 37.04 3.93
3006 5021 6.501805 AGATGGATTACCTCATGTATGCCTAA 59.498 38.462 0.00 0.00 37.04 2.69
3007 5022 6.702449 TGGATTACCTCATGTATGCCTAAT 57.298 37.500 0.00 0.00 37.04 1.73
3008 5023 7.806680 TGGATTACCTCATGTATGCCTAATA 57.193 36.000 0.00 0.00 37.04 0.98
3093 5108 7.659652 AAACTTGAGAACATAAGTACTCTGC 57.340 36.000 0.00 0.00 36.19 4.26
3126 5141 9.248291 GTTGTTGAATTTACTGTGATTGTTGAT 57.752 29.630 0.00 0.00 0.00 2.57
3179 5195 7.744087 ACTACAGCTGTGACAATTAATTTGA 57.256 32.000 29.57 2.68 38.76 2.69
3214 5230 9.408069 GAGTACTAACTCGATTTTCTTTTGAGA 57.592 33.333 0.00 0.00 42.66 3.27
3215 5231 9.194271 AGTACTAACTCGATTTTCTTTTGAGAC 57.806 33.333 0.00 0.00 0.00 3.36
3216 5232 8.975439 GTACTAACTCGATTTTCTTTTGAGACA 58.025 33.333 0.00 0.00 0.00 3.41
3217 5233 8.433421 ACTAACTCGATTTTCTTTTGAGACAA 57.567 30.769 0.00 0.00 0.00 3.18
3218 5234 8.552034 ACTAACTCGATTTTCTTTTGAGACAAG 58.448 33.333 0.00 0.00 0.00 3.16
3219 5235 7.553881 AACTCGATTTTCTTTTGAGACAAGA 57.446 32.000 0.00 0.00 0.00 3.02
3220 5236 7.736447 ACTCGATTTTCTTTTGAGACAAGAT 57.264 32.000 0.00 0.00 30.26 2.40
3221 5237 8.159344 ACTCGATTTTCTTTTGAGACAAGATT 57.841 30.769 0.00 0.00 30.26 2.40
3222 5238 8.624776 ACTCGATTTTCTTTTGAGACAAGATTT 58.375 29.630 0.00 0.00 30.26 2.17
3223 5239 9.455847 CTCGATTTTCTTTTGAGACAAGATTTT 57.544 29.630 0.00 0.00 30.26 1.82
3224 5240 9.801873 TCGATTTTCTTTTGAGACAAGATTTTT 57.198 25.926 0.00 0.00 30.26 1.94
3295 5311 1.754234 GCTGCGGTGATTTCCCCAT 60.754 57.895 0.00 0.00 0.00 4.00
3302 5318 1.407618 GGTGATTTCCCCATAAACGGC 59.592 52.381 0.00 0.00 0.00 5.68
3334 5350 6.037610 CAGCTAGTCAGACAAAAATATGGTCC 59.962 42.308 2.66 0.00 31.99 4.46
3358 5374 4.124238 TGTACACTCGGAAGGAAAAACAG 58.876 43.478 0.00 0.00 0.00 3.16
3376 5392 3.157881 ACAGATCGAAGAAGACCACTCA 58.842 45.455 0.00 0.00 43.58 3.41
3389 5405 1.271982 ACCACTCACTCCTCGCTCTAA 60.272 52.381 0.00 0.00 0.00 2.10
3536 5560 8.713737 TCTTCACAGACATTATTCTCATGAAG 57.286 34.615 13.11 13.11 41.82 3.02
3626 5650 5.973651 TTTTGCGTCATTTAAAATGTGCA 57.026 30.435 0.68 0.68 32.79 4.57
3700 5729 8.610896 TGGAAAACAGTCTTGCATTAAAAATTG 58.389 29.630 0.00 0.00 0.00 2.32
3708 5737 9.341078 AGTCTTGCATTAAAAATTGGTGAATTT 57.659 25.926 0.00 0.00 42.49 1.82
3925 5955 6.374333 TGCTCCTATGCGAAGAAAACTATTTT 59.626 34.615 0.00 0.00 35.36 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.258286 GTCAACACGGCATTGGGC 59.742 61.111 0.00 0.00 43.74 5.36
13 14 1.865788 CTGGTCAACACGGCATTGGG 61.866 60.000 0.00 0.00 0.00 4.12
14 15 1.172180 ACTGGTCAACACGGCATTGG 61.172 55.000 0.00 0.00 0.00 3.16
15 16 0.667993 AACTGGTCAACACGGCATTG 59.332 50.000 0.00 0.00 0.00 2.82
16 17 1.336755 GAAACTGGTCAACACGGCATT 59.663 47.619 0.00 0.00 0.00 3.56
17 18 0.951558 GAAACTGGTCAACACGGCAT 59.048 50.000 0.00 0.00 0.00 4.40
18 19 0.107410 AGAAACTGGTCAACACGGCA 60.107 50.000 0.00 0.00 0.00 5.69
19 20 1.002792 GAAGAAACTGGTCAACACGGC 60.003 52.381 0.00 0.00 0.00 5.68
20 21 1.260561 CGAAGAAACTGGTCAACACGG 59.739 52.381 0.00 0.00 0.00 4.94
21 22 1.260561 CCGAAGAAACTGGTCAACACG 59.739 52.381 0.00 0.00 0.00 4.49
22 23 2.544267 CTCCGAAGAAACTGGTCAACAC 59.456 50.000 0.00 0.00 0.00 3.32
23 24 2.484770 CCTCCGAAGAAACTGGTCAACA 60.485 50.000 0.00 0.00 0.00 3.33
24 25 2.143925 CCTCCGAAGAAACTGGTCAAC 58.856 52.381 0.00 0.00 0.00 3.18
25 26 1.542547 GCCTCCGAAGAAACTGGTCAA 60.543 52.381 0.00 0.00 0.00 3.18
26 27 0.034896 GCCTCCGAAGAAACTGGTCA 59.965 55.000 0.00 0.00 0.00 4.02
27 28 0.034896 TGCCTCCGAAGAAACTGGTC 59.965 55.000 0.00 0.00 0.00 4.02
28 29 0.472471 TTGCCTCCGAAGAAACTGGT 59.528 50.000 0.00 0.00 0.00 4.00
29 30 1.604604 TTTGCCTCCGAAGAAACTGG 58.395 50.000 0.00 0.00 0.00 4.00
30 31 2.618709 AGTTTTGCCTCCGAAGAAACTG 59.381 45.455 0.00 0.00 0.00 3.16
31 32 2.618709 CAGTTTTGCCTCCGAAGAAACT 59.381 45.455 0.00 0.00 0.00 2.66
32 33 2.858646 GCAGTTTTGCCTCCGAAGAAAC 60.859 50.000 0.00 0.00 44.74 2.78
33 34 1.336755 GCAGTTTTGCCTCCGAAGAAA 59.663 47.619 0.00 0.00 44.74 2.52
34 35 0.951558 GCAGTTTTGCCTCCGAAGAA 59.048 50.000 0.00 0.00 44.74 2.52
35 36 2.629002 GCAGTTTTGCCTCCGAAGA 58.371 52.632 0.00 0.00 44.74 2.87
45 46 2.426752 CCGCCGTTCGCAGTTTTG 60.427 61.111 0.00 0.00 37.30 2.44
46 47 2.898343 ACCGCCGTTCGCAGTTTT 60.898 55.556 0.00 0.00 37.30 2.43
47 48 3.645975 CACCGCCGTTCGCAGTTT 61.646 61.111 0.00 0.00 37.30 2.66
53 54 3.487202 CATCACCACCGCCGTTCG 61.487 66.667 0.00 0.00 38.08 3.95
54 55 3.124921 CCATCACCACCGCCGTTC 61.125 66.667 0.00 0.00 0.00 3.95
58 59 2.755469 ATTGCCATCACCACCGCC 60.755 61.111 0.00 0.00 0.00 6.13
59 60 1.718757 GAGATTGCCATCACCACCGC 61.719 60.000 0.01 0.00 0.00 5.68
60 61 1.097547 GGAGATTGCCATCACCACCG 61.098 60.000 9.05 0.00 39.40 4.94
61 62 1.097547 CGGAGATTGCCATCACCACC 61.098 60.000 13.46 4.74 39.53 4.61
62 63 1.097547 CCGGAGATTGCCATCACCAC 61.098 60.000 13.46 0.00 39.53 4.16
63 64 1.224315 CCGGAGATTGCCATCACCA 59.776 57.895 13.46 0.00 39.53 4.17
64 65 2.189499 GCCGGAGATTGCCATCACC 61.189 63.158 5.05 4.39 36.93 4.02
65 66 2.537560 CGCCGGAGATTGCCATCAC 61.538 63.158 5.05 0.00 0.00 3.06
66 67 2.203056 CGCCGGAGATTGCCATCA 60.203 61.111 5.05 0.00 0.00 3.07
67 68 1.958205 CTCGCCGGAGATTGCCATC 60.958 63.158 8.83 0.00 43.27 3.51
68 69 1.399744 TACTCGCCGGAGATTGCCAT 61.400 55.000 8.83 0.00 43.27 4.40
69 70 2.016393 CTACTCGCCGGAGATTGCCA 62.016 60.000 8.83 0.00 43.27 4.92
70 71 1.300233 CTACTCGCCGGAGATTGCC 60.300 63.158 8.83 0.00 43.27 4.52
71 72 1.951631 GCTACTCGCCGGAGATTGC 60.952 63.158 8.83 9.74 43.27 3.56
72 73 0.179111 TTGCTACTCGCCGGAGATTG 60.179 55.000 8.83 0.00 43.27 2.67
73 74 0.179108 GTTGCTACTCGCCGGAGATT 60.179 55.000 8.83 5.70 43.27 2.40
74 75 1.437986 GTTGCTACTCGCCGGAGAT 59.562 57.895 8.83 1.79 43.27 2.75
75 76 2.707849 GGTTGCTACTCGCCGGAGA 61.708 63.158 5.05 6.70 43.27 3.71
76 77 2.202756 GGTTGCTACTCGCCGGAG 60.203 66.667 5.05 0.00 46.13 4.63
77 78 2.678934 AGGTTGCTACTCGCCGGA 60.679 61.111 5.05 0.00 38.05 5.14
78 79 1.381928 TAGAGGTTGCTACTCGCCGG 61.382 60.000 0.00 0.00 39.90 6.13
79 80 0.454600 TTAGAGGTTGCTACTCGCCG 59.545 55.000 0.00 0.00 39.90 6.46
80 81 2.667473 TTTAGAGGTTGCTACTCGCC 57.333 50.000 0.00 0.00 39.90 5.54
81 82 4.201822 CCAATTTTAGAGGTTGCTACTCGC 60.202 45.833 0.00 0.00 39.90 5.03
82 83 5.175859 TCCAATTTTAGAGGTTGCTACTCG 58.824 41.667 0.00 0.00 39.90 4.18
83 84 7.631717 ATTCCAATTTTAGAGGTTGCTACTC 57.368 36.000 0.00 0.00 35.20 2.59
84 85 8.957466 GTTATTCCAATTTTAGAGGTTGCTACT 58.043 33.333 0.00 0.00 0.00 2.57
85 86 8.736244 TGTTATTCCAATTTTAGAGGTTGCTAC 58.264 33.333 0.00 0.00 0.00 3.58
86 87 8.871629 TGTTATTCCAATTTTAGAGGTTGCTA 57.128 30.769 0.00 0.00 0.00 3.49
87 88 7.775053 TGTTATTCCAATTTTAGAGGTTGCT 57.225 32.000 0.00 0.00 0.00 3.91
88 89 7.870445 TGTTGTTATTCCAATTTTAGAGGTTGC 59.130 33.333 0.00 0.00 0.00 4.17
89 90 9.410556 CTGTTGTTATTCCAATTTTAGAGGTTG 57.589 33.333 0.00 0.00 0.00 3.77
90 91 8.088365 GCTGTTGTTATTCCAATTTTAGAGGTT 58.912 33.333 0.00 0.00 0.00 3.50
91 92 7.232534 TGCTGTTGTTATTCCAATTTTAGAGGT 59.767 33.333 0.00 0.00 0.00 3.85
92 93 7.601856 TGCTGTTGTTATTCCAATTTTAGAGG 58.398 34.615 0.00 0.00 0.00 3.69
93 94 7.756722 CCTGCTGTTGTTATTCCAATTTTAGAG 59.243 37.037 0.00 0.00 0.00 2.43
94 95 7.309744 CCCTGCTGTTGTTATTCCAATTTTAGA 60.310 37.037 0.00 0.00 0.00 2.10
95 96 6.813152 CCCTGCTGTTGTTATTCCAATTTTAG 59.187 38.462 0.00 0.00 0.00 1.85
96 97 6.295575 CCCCTGCTGTTGTTATTCCAATTTTA 60.296 38.462 0.00 0.00 0.00 1.52
97 98 5.512921 CCCCTGCTGTTGTTATTCCAATTTT 60.513 40.000 0.00 0.00 0.00 1.82
98 99 4.020307 CCCCTGCTGTTGTTATTCCAATTT 60.020 41.667 0.00 0.00 0.00 1.82
99 100 3.515104 CCCCTGCTGTTGTTATTCCAATT 59.485 43.478 0.00 0.00 0.00 2.32
100 101 3.099141 CCCCTGCTGTTGTTATTCCAAT 58.901 45.455 0.00 0.00 0.00 3.16
101 102 2.109128 TCCCCTGCTGTTGTTATTCCAA 59.891 45.455 0.00 0.00 0.00 3.53
102 103 1.707989 TCCCCTGCTGTTGTTATTCCA 59.292 47.619 0.00 0.00 0.00 3.53
103 104 2.507407 TCCCCTGCTGTTGTTATTCC 57.493 50.000 0.00 0.00 0.00 3.01
104 105 4.016444 TCATTCCCCTGCTGTTGTTATTC 58.984 43.478 0.00 0.00 0.00 1.75
105 106 4.019174 CTCATTCCCCTGCTGTTGTTATT 58.981 43.478 0.00 0.00 0.00 1.40
106 107 3.266772 TCTCATTCCCCTGCTGTTGTTAT 59.733 43.478 0.00 0.00 0.00 1.89
107 108 2.642311 TCTCATTCCCCTGCTGTTGTTA 59.358 45.455 0.00 0.00 0.00 2.41
108 109 1.425066 TCTCATTCCCCTGCTGTTGTT 59.575 47.619 0.00 0.00 0.00 2.83
109 110 1.067295 TCTCATTCCCCTGCTGTTGT 58.933 50.000 0.00 0.00 0.00 3.32
110 111 1.004044 AGTCTCATTCCCCTGCTGTTG 59.996 52.381 0.00 0.00 0.00 3.33
111 112 1.366319 AGTCTCATTCCCCTGCTGTT 58.634 50.000 0.00 0.00 0.00 3.16
112 113 1.366319 AAGTCTCATTCCCCTGCTGT 58.634 50.000 0.00 0.00 0.00 4.40
113 114 2.237143 TGTAAGTCTCATTCCCCTGCTG 59.763 50.000 0.00 0.00 0.00 4.41
114 115 2.551270 TGTAAGTCTCATTCCCCTGCT 58.449 47.619 0.00 0.00 0.00 4.24
115 116 3.471680 GATGTAAGTCTCATTCCCCTGC 58.528 50.000 0.00 0.00 0.00 4.85
116 117 3.493350 CGGATGTAAGTCTCATTCCCCTG 60.493 52.174 0.00 0.00 0.00 4.45
117 118 2.700897 CGGATGTAAGTCTCATTCCCCT 59.299 50.000 0.00 0.00 0.00 4.79
118 119 2.224305 CCGGATGTAAGTCTCATTCCCC 60.224 54.545 0.00 0.00 0.00 4.81
119 120 2.698797 TCCGGATGTAAGTCTCATTCCC 59.301 50.000 0.00 0.00 0.00 3.97
120 121 4.402056 TTCCGGATGTAAGTCTCATTCC 57.598 45.455 4.15 0.00 0.00 3.01
121 122 5.601662 TGATTCCGGATGTAAGTCTCATTC 58.398 41.667 4.15 0.00 0.00 2.67
122 123 5.605534 CTGATTCCGGATGTAAGTCTCATT 58.394 41.667 4.15 0.00 0.00 2.57
123 124 4.502259 GCTGATTCCGGATGTAAGTCTCAT 60.502 45.833 4.15 0.00 0.00 2.90
124 125 3.181475 GCTGATTCCGGATGTAAGTCTCA 60.181 47.826 4.15 0.00 0.00 3.27
125 126 3.385577 GCTGATTCCGGATGTAAGTCTC 58.614 50.000 4.15 0.00 0.00 3.36
126 127 2.103263 GGCTGATTCCGGATGTAAGTCT 59.897 50.000 4.15 0.00 0.00 3.24
127 128 2.158957 TGGCTGATTCCGGATGTAAGTC 60.159 50.000 4.15 1.74 0.00 3.01
128 129 1.837439 TGGCTGATTCCGGATGTAAGT 59.163 47.619 4.15 0.00 0.00 2.24
129 130 2.620251 TGGCTGATTCCGGATGTAAG 57.380 50.000 4.15 0.56 0.00 2.34
130 131 3.576078 ATTGGCTGATTCCGGATGTAA 57.424 42.857 4.15 0.00 0.00 2.41
131 132 3.576078 AATTGGCTGATTCCGGATGTA 57.424 42.857 4.15 0.00 0.00 2.29
132 133 2.428171 CAAATTGGCTGATTCCGGATGT 59.572 45.455 4.15 0.00 0.00 3.06
133 134 2.689471 TCAAATTGGCTGATTCCGGATG 59.311 45.455 4.15 0.00 0.00 3.51
134 135 3.017048 TCAAATTGGCTGATTCCGGAT 57.983 42.857 4.15 0.00 0.00 4.18
135 136 2.491693 GTTCAAATTGGCTGATTCCGGA 59.508 45.455 0.00 0.00 0.00 5.14
136 137 2.493278 AGTTCAAATTGGCTGATTCCGG 59.507 45.455 0.00 0.00 0.00 5.14
137 138 3.428045 GGAGTTCAAATTGGCTGATTCCG 60.428 47.826 0.00 0.00 0.00 4.30
138 139 3.511146 TGGAGTTCAAATTGGCTGATTCC 59.489 43.478 0.00 4.09 31.98 3.01
139 140 4.789012 TGGAGTTCAAATTGGCTGATTC 57.211 40.909 0.00 0.00 0.00 2.52
140 141 4.773674 TGATGGAGTTCAAATTGGCTGATT 59.226 37.500 0.00 0.00 0.00 2.57
141 142 4.346730 TGATGGAGTTCAAATTGGCTGAT 58.653 39.130 0.00 0.00 0.00 2.90
142 143 3.760151 CTGATGGAGTTCAAATTGGCTGA 59.240 43.478 0.00 0.00 0.00 4.26
143 144 3.675228 GCTGATGGAGTTCAAATTGGCTG 60.675 47.826 0.00 0.00 0.00 4.85
144 145 2.494870 GCTGATGGAGTTCAAATTGGCT 59.505 45.455 0.00 0.00 0.00 4.75
145 146 2.733227 CGCTGATGGAGTTCAAATTGGC 60.733 50.000 0.00 0.00 0.00 4.52
146 147 2.733227 GCGCTGATGGAGTTCAAATTGG 60.733 50.000 0.00 0.00 0.00 3.16
147 148 2.523015 GCGCTGATGGAGTTCAAATTG 58.477 47.619 0.00 0.00 0.00 2.32
148 149 1.131126 CGCGCTGATGGAGTTCAAATT 59.869 47.619 5.56 0.00 0.00 1.82
149 150 0.729116 CGCGCTGATGGAGTTCAAAT 59.271 50.000 5.56 0.00 0.00 2.32
150 151 0.602638 ACGCGCTGATGGAGTTCAAA 60.603 50.000 5.73 0.00 0.00 2.69
151 152 0.602638 AACGCGCTGATGGAGTTCAA 60.603 50.000 5.73 0.00 0.00 2.69
152 153 1.005037 AACGCGCTGATGGAGTTCA 60.005 52.632 5.73 0.00 0.00 3.18
153 154 1.421485 CAACGCGCTGATGGAGTTC 59.579 57.895 5.73 0.00 0.00 3.01
154 155 2.680913 GCAACGCGCTGATGGAGTT 61.681 57.895 14.76 0.00 37.77 3.01
155 156 3.121030 GCAACGCGCTGATGGAGT 61.121 61.111 14.76 0.00 37.77 3.85
156 157 3.869272 GGCAACGCGCTGATGGAG 61.869 66.667 14.76 0.00 41.91 3.86
172 173 1.999634 ATGGAGGCCATTCCGAAGGG 62.000 60.000 5.01 7.49 43.34 3.95
173 174 1.533711 ATGGAGGCCATTCCGAAGG 59.466 57.895 5.01 0.00 42.23 3.46
174 175 0.471617 AGATGGAGGCCATTCCGAAG 59.528 55.000 5.01 0.00 45.26 3.79
175 176 0.469917 GAGATGGAGGCCATTCCGAA 59.530 55.000 5.01 0.00 45.26 4.30
176 177 1.410850 GGAGATGGAGGCCATTCCGA 61.411 60.000 5.01 0.00 45.26 4.55
177 178 1.072159 GGAGATGGAGGCCATTCCG 59.928 63.158 5.01 0.00 45.26 4.30
178 179 0.399833 GAGGAGATGGAGGCCATTCC 59.600 60.000 5.01 4.42 45.26 3.01
179 180 0.399833 GGAGGAGATGGAGGCCATTC 59.600 60.000 5.01 0.00 45.26 2.67
180 181 0.029267 AGGAGGAGATGGAGGCCATT 60.029 55.000 5.01 0.00 45.26 3.16
182 183 1.074926 GAGGAGGAGATGGAGGCCA 60.075 63.158 5.01 0.00 38.19 5.36
183 184 1.120795 CAGAGGAGGAGATGGAGGCC 61.121 65.000 0.00 0.00 0.00 5.19
184 185 0.398381 ACAGAGGAGGAGATGGAGGC 60.398 60.000 0.00 0.00 0.00 4.70
185 186 1.761784 CAACAGAGGAGGAGATGGAGG 59.238 57.143 0.00 0.00 0.00 4.30
186 187 2.430332 GACAACAGAGGAGGAGATGGAG 59.570 54.545 0.00 0.00 0.00 3.86
187 188 2.043664 AGACAACAGAGGAGGAGATGGA 59.956 50.000 0.00 0.00 0.00 3.41
188 189 2.430332 GAGACAACAGAGGAGGAGATGG 59.570 54.545 0.00 0.00 0.00 3.51
189 190 2.098934 CGAGACAACAGAGGAGGAGATG 59.901 54.545 0.00 0.00 0.00 2.90
190 191 2.025793 TCGAGACAACAGAGGAGGAGAT 60.026 50.000 0.00 0.00 0.00 2.75
191 192 1.351350 TCGAGACAACAGAGGAGGAGA 59.649 52.381 0.00 0.00 0.00 3.71
192 193 1.827681 TCGAGACAACAGAGGAGGAG 58.172 55.000 0.00 0.00 0.00 3.69
193 194 2.095461 CATCGAGACAACAGAGGAGGA 58.905 52.381 0.00 0.00 0.00 3.71
194 195 1.821753 ACATCGAGACAACAGAGGAGG 59.178 52.381 0.00 0.00 0.00 4.30
195 196 2.416566 CCACATCGAGACAACAGAGGAG 60.417 54.545 0.00 0.00 0.00 3.69
196 197 1.546029 CCACATCGAGACAACAGAGGA 59.454 52.381 0.00 0.00 0.00 3.71
197 198 1.546029 TCCACATCGAGACAACAGAGG 59.454 52.381 0.00 0.00 0.00 3.69
198 199 2.416566 CCTCCACATCGAGACAACAGAG 60.417 54.545 0.00 0.00 30.97 3.35
199 200 1.546029 CCTCCACATCGAGACAACAGA 59.454 52.381 0.00 0.00 30.97 3.41
200 201 1.273606 ACCTCCACATCGAGACAACAG 59.726 52.381 0.00 0.00 30.97 3.16
201 202 1.272490 GACCTCCACATCGAGACAACA 59.728 52.381 0.00 0.00 30.97 3.33
202 203 1.732732 CGACCTCCACATCGAGACAAC 60.733 57.143 0.00 0.00 40.86 3.32
203 204 0.526211 CGACCTCCACATCGAGACAA 59.474 55.000 0.00 0.00 40.86 3.18
204 205 1.934220 GCGACCTCCACATCGAGACA 61.934 60.000 0.00 0.00 40.86 3.41
205 206 1.226717 GCGACCTCCACATCGAGAC 60.227 63.158 0.00 0.00 40.86 3.36
206 207 2.415608 GGCGACCTCCACATCGAGA 61.416 63.158 0.00 0.00 40.86 4.04
207 208 2.105128 GGCGACCTCCACATCGAG 59.895 66.667 0.00 0.00 40.86 4.04
208 209 2.362503 AGGCGACCTCCACATCGA 60.363 61.111 0.00 0.00 40.86 3.59
209 210 2.105128 GAGGCGACCTCCACATCG 59.895 66.667 13.12 0.00 44.36 3.84
224 225 4.181010 CAGTGGGCGGATGGGGAG 62.181 72.222 0.00 0.00 0.00 4.30
234 235 1.941999 GCCTTGATTCTGCAGTGGGC 61.942 60.000 14.67 14.43 45.13 5.36
235 236 0.609957 TGCCTTGATTCTGCAGTGGG 60.610 55.000 14.67 8.92 0.00 4.61
236 237 1.201647 CTTGCCTTGATTCTGCAGTGG 59.798 52.381 14.67 8.61 36.21 4.00
237 238 1.201647 CCTTGCCTTGATTCTGCAGTG 59.798 52.381 14.67 0.00 36.21 3.66
238 239 1.542492 CCTTGCCTTGATTCTGCAGT 58.458 50.000 14.67 0.00 36.21 4.40
239 240 0.815734 CCCTTGCCTTGATTCTGCAG 59.184 55.000 7.63 7.63 36.21 4.41
240 241 0.405198 TCCCTTGCCTTGATTCTGCA 59.595 50.000 0.00 0.00 0.00 4.41
241 242 1.101331 CTCCCTTGCCTTGATTCTGC 58.899 55.000 0.00 0.00 0.00 4.26
242 243 2.641305 CTCTCCCTTGCCTTGATTCTG 58.359 52.381 0.00 0.00 0.00 3.02
243 244 1.064832 GCTCTCCCTTGCCTTGATTCT 60.065 52.381 0.00 0.00 0.00 2.40
244 245 1.064832 AGCTCTCCCTTGCCTTGATTC 60.065 52.381 0.00 0.00 0.00 2.52
245 246 0.998145 AGCTCTCCCTTGCCTTGATT 59.002 50.000 0.00 0.00 0.00 2.57
246 247 0.545646 GAGCTCTCCCTTGCCTTGAT 59.454 55.000 6.43 0.00 0.00 2.57
247 248 1.557269 GGAGCTCTCCCTTGCCTTGA 61.557 60.000 14.64 0.00 43.94 3.02
248 249 1.077858 GGAGCTCTCCCTTGCCTTG 60.078 63.158 14.64 0.00 43.94 3.61
249 250 3.409384 GGAGCTCTCCCTTGCCTT 58.591 61.111 14.64 0.00 43.94 4.35
263 264 4.794648 TTTGCGATGGGGCGGGAG 62.795 66.667 0.00 0.00 35.06 4.30
264 265 4.794648 CTTTGCGATGGGGCGGGA 62.795 66.667 0.00 0.00 35.06 5.14
265 266 4.794648 TCTTTGCGATGGGGCGGG 62.795 66.667 0.00 0.00 35.06 6.13
266 267 2.516930 ATCTTTGCGATGGGGCGG 60.517 61.111 0.00 0.00 35.06 6.13
267 268 2.717485 CATCTTTGCGATGGGGCG 59.283 61.111 0.00 0.00 44.69 6.13
273 274 0.531532 CGAGCCTCCATCTTTGCGAT 60.532 55.000 0.00 0.00 0.00 4.58
274 275 1.153568 CGAGCCTCCATCTTTGCGA 60.154 57.895 0.00 0.00 0.00 5.10
275 276 2.817423 GCGAGCCTCCATCTTTGCG 61.817 63.158 0.00 0.00 0.00 4.85
276 277 1.435408 GAGCGAGCCTCCATCTTTGC 61.435 60.000 0.00 0.00 34.35 3.68
277 278 0.177604 AGAGCGAGCCTCCATCTTTG 59.822 55.000 0.00 0.00 41.74 2.77
278 279 1.686052 CTAGAGCGAGCCTCCATCTTT 59.314 52.381 0.00 0.00 41.74 2.52
279 280 1.327303 CTAGAGCGAGCCTCCATCTT 58.673 55.000 0.00 0.00 41.74 2.40
280 281 1.178534 GCTAGAGCGAGCCTCCATCT 61.179 60.000 0.00 0.00 41.74 2.90
281 282 1.288752 GCTAGAGCGAGCCTCCATC 59.711 63.158 0.00 0.00 41.74 3.51
282 283 3.453988 GCTAGAGCGAGCCTCCAT 58.546 61.111 0.00 0.00 41.74 3.41
292 293 0.458716 GAACACCACGGAGCTAGAGC 60.459 60.000 0.00 0.00 42.49 4.09
293 294 0.179161 CGAACACCACGGAGCTAGAG 60.179 60.000 0.00 0.00 0.00 2.43
294 295 1.880894 CGAACACCACGGAGCTAGA 59.119 57.895 0.00 0.00 0.00 2.43
295 296 1.805945 GCGAACACCACGGAGCTAG 60.806 63.158 0.00 0.00 0.00 3.42
296 297 2.260434 GCGAACACCACGGAGCTA 59.740 61.111 0.00 0.00 0.00 3.32
297 298 4.681978 GGCGAACACCACGGAGCT 62.682 66.667 0.00 0.00 0.00 4.09
298 299 4.980805 TGGCGAACACCACGGAGC 62.981 66.667 0.00 0.00 33.75 4.70
299 300 1.671054 AATGGCGAACACCACGGAG 60.671 57.895 0.00 0.00 44.17 4.63
300 301 1.963855 CAATGGCGAACACCACGGA 60.964 57.895 0.00 0.00 44.17 4.69
301 302 2.560861 CAATGGCGAACACCACGG 59.439 61.111 0.00 0.00 44.17 4.94
302 303 2.126888 GCAATGGCGAACACCACG 60.127 61.111 0.00 0.00 44.17 4.94
303 304 2.258286 GGCAATGGCGAACACCAC 59.742 61.111 0.00 0.00 44.17 4.16
304 305 2.988684 GGGCAATGGCGAACACCA 60.989 61.111 0.00 0.00 45.82 4.17
305 306 4.114997 CGGGCAATGGCGAACACC 62.115 66.667 0.00 0.00 42.47 4.16
306 307 4.776647 GCGGGCAATGGCGAACAC 62.777 66.667 0.00 0.00 42.47 3.32
308 309 4.481112 CTGCGGGCAATGGCGAAC 62.481 66.667 0.00 0.00 42.47 3.95
322 323 0.231790 GAAGATGAATCTCGCGCTGC 59.768 55.000 5.56 0.00 35.76 5.25
323 324 0.501854 CGAAGATGAATCTCGCGCTG 59.498 55.000 5.56 0.00 35.76 5.18
324 325 2.878743 CGAAGATGAATCTCGCGCT 58.121 52.632 5.56 0.00 35.76 5.92
325 326 1.200348 GCGAAGATGAATCTCGCGC 59.800 57.895 18.41 18.41 45.86 6.86
326 327 0.871592 TGGCGAAGATGAATCTCGCG 60.872 55.000 20.45 0.00 45.47 5.87
327 328 0.579156 GTGGCGAAGATGAATCTCGC 59.421 55.000 19.71 19.71 44.67 5.03
328 329 1.857217 CTGTGGCGAAGATGAATCTCG 59.143 52.381 0.00 1.39 35.76 4.04
329 330 1.596727 GCTGTGGCGAAGATGAATCTC 59.403 52.381 0.00 0.00 35.76 2.75
330 331 1.661341 GCTGTGGCGAAGATGAATCT 58.339 50.000 0.00 0.00 39.22 2.40
331 332 0.659957 GGCTGTGGCGAAGATGAATC 59.340 55.000 0.00 0.00 39.81 2.52
332 333 0.035152 TGGCTGTGGCGAAGATGAAT 60.035 50.000 0.00 0.00 39.81 2.57
333 334 0.674581 CTGGCTGTGGCGAAGATGAA 60.675 55.000 0.00 0.00 39.81 2.57
334 335 1.078918 CTGGCTGTGGCGAAGATGA 60.079 57.895 0.00 0.00 39.81 2.92
335 336 2.758089 GCTGGCTGTGGCGAAGATG 61.758 63.158 0.00 0.00 39.81 2.90
336 337 2.437359 GCTGGCTGTGGCGAAGAT 60.437 61.111 0.00 0.00 39.81 2.40
373 374 4.514577 ATCGAGCGACAAGGGCGG 62.515 66.667 0.00 0.00 35.00 6.13
374 375 2.956964 GATCGAGCGACAAGGGCG 60.957 66.667 0.00 0.00 35.00 6.13
375 376 2.586357 GGATCGAGCGACAAGGGC 60.586 66.667 0.00 0.00 0.00 5.19
376 377 2.278857 CGGATCGAGCGACAAGGG 60.279 66.667 0.00 0.00 0.00 3.95
377 378 2.956964 GCGGATCGAGCGACAAGG 60.957 66.667 0.00 0.00 0.00 3.61
378 379 2.956964 GGCGGATCGAGCGACAAG 60.957 66.667 0.00 0.00 35.00 3.16
379 380 4.847516 CGGCGGATCGAGCGACAA 62.848 66.667 0.00 0.00 35.00 3.18
421 422 4.271816 AGATACGCCGGCTGCTCG 62.272 66.667 26.68 11.18 38.05 5.03
422 423 2.355244 GAGATACGCCGGCTGCTC 60.355 66.667 26.68 19.94 38.05 4.26
423 424 3.917760 GGAGATACGCCGGCTGCT 61.918 66.667 26.68 15.64 38.05 4.24
424 425 3.917760 AGGAGATACGCCGGCTGC 61.918 66.667 26.68 10.82 0.00 5.25
425 426 1.810606 ATCAGGAGATACGCCGGCTG 61.811 60.000 26.68 20.24 31.14 4.85
426 427 1.528292 GATCAGGAGATACGCCGGCT 61.528 60.000 26.68 14.27 33.72 5.52
427 428 1.080434 GATCAGGAGATACGCCGGC 60.080 63.158 19.07 19.07 33.72 6.13
428 429 1.587054 GGATCAGGAGATACGCCGG 59.413 63.158 0.00 0.00 33.72 6.13
433 434 1.080434 GCGGCGGATCAGGAGATAC 60.080 63.158 9.78 0.00 33.72 2.24
434 435 1.527433 CTGCGGCGGATCAGGAGATA 61.527 60.000 9.78 0.00 33.72 1.98
435 436 2.839632 TGCGGCGGATCAGGAGAT 60.840 61.111 9.78 0.00 37.13 2.75
436 437 3.531207 CTGCGGCGGATCAGGAGA 61.531 66.667 9.78 0.00 30.39 3.71
442 443 4.537433 AAGGAGCTGCGGCGGATC 62.537 66.667 18.35 18.35 44.37 3.36
443 444 4.537433 GAAGGAGCTGCGGCGGAT 62.537 66.667 14.15 5.99 44.37 4.18
447 448 3.731653 GAGGAGAAGGAGCTGCGGC 62.732 68.421 10.33 10.33 39.06 6.53
448 449 2.498726 GAGGAGAAGGAGCTGCGG 59.501 66.667 0.00 0.00 0.00 5.69
449 450 1.684386 ATGGAGGAGAAGGAGCTGCG 61.684 60.000 0.00 0.00 0.00 5.18
450 451 0.106521 GATGGAGGAGAAGGAGCTGC 59.893 60.000 0.00 0.00 0.00 5.25
451 452 0.758123 GGATGGAGGAGAAGGAGCTG 59.242 60.000 0.00 0.00 0.00 4.24
452 453 0.341258 TGGATGGAGGAGAAGGAGCT 59.659 55.000 0.00 0.00 0.00 4.09
453 454 1.347378 GATGGATGGAGGAGAAGGAGC 59.653 57.143 0.00 0.00 0.00 4.70
454 455 2.633967 CTGATGGATGGAGGAGAAGGAG 59.366 54.545 0.00 0.00 0.00 3.69
455 456 2.687297 CTGATGGATGGAGGAGAAGGA 58.313 52.381 0.00 0.00 0.00 3.36
456 457 1.072015 GCTGATGGATGGAGGAGAAGG 59.928 57.143 0.00 0.00 0.00 3.46
457 458 1.767088 TGCTGATGGATGGAGGAGAAG 59.233 52.381 0.00 0.00 0.00 2.85
458 459 1.767088 CTGCTGATGGATGGAGGAGAA 59.233 52.381 0.00 0.00 0.00 2.87
459 460 1.062658 TCTGCTGATGGATGGAGGAGA 60.063 52.381 0.00 0.00 32.38 3.71
460 461 1.421480 TCTGCTGATGGATGGAGGAG 58.579 55.000 0.00 0.00 0.00 3.69
461 462 1.976404 GATCTGCTGATGGATGGAGGA 59.024 52.381 11.21 0.00 32.19 3.71
462 463 1.979308 AGATCTGCTGATGGATGGAGG 59.021 52.381 11.21 0.00 32.19 4.30
473 474 3.204526 GTGGAAATCCTCAGATCTGCTG 58.795 50.000 18.36 12.44 46.31 4.41
474 475 2.172293 GGTGGAAATCCTCAGATCTGCT 59.828 50.000 18.36 0.00 36.82 4.24
475 476 2.570135 GGTGGAAATCCTCAGATCTGC 58.430 52.381 18.36 1.77 36.82 4.26
476 477 2.831333 CGGTGGAAATCCTCAGATCTG 58.169 52.381 17.07 17.07 36.82 2.90
477 478 1.139853 GCGGTGGAAATCCTCAGATCT 59.860 52.381 5.95 0.00 36.82 2.75
478 479 1.587547 GCGGTGGAAATCCTCAGATC 58.412 55.000 5.95 0.00 36.82 2.75
479 480 0.181350 GGCGGTGGAAATCCTCAGAT 59.819 55.000 5.95 0.00 36.82 2.90
480 481 1.602237 GGCGGTGGAAATCCTCAGA 59.398 57.895 5.95 0.00 36.82 3.27
481 482 1.452108 GGGCGGTGGAAATCCTCAG 60.452 63.158 0.44 0.00 36.82 3.35
482 483 2.674754 GGGCGGTGGAAATCCTCA 59.325 61.111 0.44 0.00 36.82 3.86
483 484 2.124278 GGGGCGGTGGAAATCCTC 60.124 66.667 0.44 0.00 36.82 3.71
484 485 3.739613 GGGGGCGGTGGAAATCCT 61.740 66.667 0.44 0.00 36.82 3.24
498 499 3.839432 GAAGCGGAGAGTCGGGGG 61.839 72.222 0.00 0.00 0.00 5.40
499 500 4.194720 CGAAGCGGAGAGTCGGGG 62.195 72.222 0.00 0.00 32.86 5.73
500 501 3.398353 GACGAAGCGGAGAGTCGGG 62.398 68.421 0.00 0.00 39.17 5.14
501 502 2.100603 GACGAAGCGGAGAGTCGG 59.899 66.667 0.00 0.00 39.17 4.79
502 503 1.226156 CAGACGAAGCGGAGAGTCG 60.226 63.158 0.00 0.00 40.38 4.18
503 504 1.137825 CCAGACGAAGCGGAGAGTC 59.862 63.158 0.00 0.00 0.00 3.36
504 505 0.681564 ATCCAGACGAAGCGGAGAGT 60.682 55.000 0.00 0.00 30.84 3.24
505 506 0.248825 CATCCAGACGAAGCGGAGAG 60.249 60.000 0.00 0.00 30.84 3.20
506 507 0.679960 TCATCCAGACGAAGCGGAGA 60.680 55.000 0.00 0.00 30.84 3.71
507 508 0.173481 TTCATCCAGACGAAGCGGAG 59.827 55.000 0.00 0.00 30.84 4.63
508 509 0.824109 ATTCATCCAGACGAAGCGGA 59.176 50.000 0.00 0.00 0.00 5.54
509 510 1.212616 GATTCATCCAGACGAAGCGG 58.787 55.000 0.00 0.00 0.00 5.52
510 511 0.848942 CGATTCATCCAGACGAAGCG 59.151 55.000 0.00 0.00 43.43 4.68
511 512 0.579156 GCGATTCATCCAGACGAAGC 59.421 55.000 0.00 0.00 0.00 3.86
512 513 1.212616 GGCGATTCATCCAGACGAAG 58.787 55.000 0.00 0.00 0.00 3.79
513 514 0.534873 TGGCGATTCATCCAGACGAA 59.465 50.000 0.00 0.00 0.00 3.85
514 515 0.179111 GTGGCGATTCATCCAGACGA 60.179 55.000 0.00 0.00 32.15 4.20
515 516 1.154205 GGTGGCGATTCATCCAGACG 61.154 60.000 0.00 0.00 32.15 4.18
516 517 1.154205 CGGTGGCGATTCATCCAGAC 61.154 60.000 0.00 0.00 32.15 3.51
517 518 1.143838 CGGTGGCGATTCATCCAGA 59.856 57.895 0.00 0.00 32.15 3.86
518 519 1.153369 ACGGTGGCGATTCATCCAG 60.153 57.895 0.00 0.00 32.15 3.86
519 520 1.153449 GACGGTGGCGATTCATCCA 60.153 57.895 0.00 0.00 0.00 3.41
520 521 0.742990 TTGACGGTGGCGATTCATCC 60.743 55.000 0.00 0.00 0.00 3.51
521 522 1.083489 TTTGACGGTGGCGATTCATC 58.917 50.000 0.00 0.00 0.00 2.92
522 523 0.802494 GTTTGACGGTGGCGATTCAT 59.198 50.000 0.00 0.00 0.00 2.57
523 524 1.231958 GGTTTGACGGTGGCGATTCA 61.232 55.000 0.00 0.00 0.00 2.57
524 525 1.500396 GGTTTGACGGTGGCGATTC 59.500 57.895 0.00 0.00 0.00 2.52
525 526 1.969589 GGGTTTGACGGTGGCGATT 60.970 57.895 0.00 0.00 0.00 3.34
526 527 2.359478 GGGTTTGACGGTGGCGAT 60.359 61.111 0.00 0.00 0.00 4.58
527 528 4.973055 CGGGTTTGACGGTGGCGA 62.973 66.667 0.00 0.00 0.00 5.54
530 531 2.718747 TAGTGCGGGTTTGACGGTGG 62.719 60.000 0.00 0.00 0.00 4.61
531 532 1.289109 CTAGTGCGGGTTTGACGGTG 61.289 60.000 0.00 0.00 0.00 4.94
532 533 1.005394 CTAGTGCGGGTTTGACGGT 60.005 57.895 0.00 0.00 0.00 4.83
533 534 2.388232 GCTAGTGCGGGTTTGACGG 61.388 63.158 0.00 0.00 0.00 4.79
534 535 3.165498 GCTAGTGCGGGTTTGACG 58.835 61.111 0.00 0.00 0.00 4.35
544 545 3.251043 GCAGACTCGCGCTAGTGC 61.251 66.667 20.36 18.49 0.00 4.40
545 546 1.871345 CAGCAGACTCGCGCTAGTG 60.871 63.158 20.36 7.24 36.50 2.74
546 547 1.587043 TTCAGCAGACTCGCGCTAGT 61.587 55.000 15.20 15.20 36.50 2.57
547 548 1.136872 GTTCAGCAGACTCGCGCTAG 61.137 60.000 7.49 7.49 36.50 3.42
548 549 1.154016 GTTCAGCAGACTCGCGCTA 60.154 57.895 5.56 0.00 36.50 4.26
549 550 2.431601 GTTCAGCAGACTCGCGCT 60.432 61.111 5.56 0.00 39.66 5.92
550 551 2.220455 CTTGTTCAGCAGACTCGCGC 62.220 60.000 0.00 0.00 36.85 6.86
551 552 0.664466 TCTTGTTCAGCAGACTCGCG 60.664 55.000 0.00 0.00 36.85 5.87
552 553 1.502231 TTCTTGTTCAGCAGACTCGC 58.498 50.000 0.00 0.00 0.00 5.03
553 554 4.034510 AGTTTTTCTTGTTCAGCAGACTCG 59.965 41.667 0.00 0.00 0.00 4.18
554 555 5.491635 AGTTTTTCTTGTTCAGCAGACTC 57.508 39.130 0.00 0.00 0.00 3.36
555 556 5.163612 GGAAGTTTTTCTTGTTCAGCAGACT 60.164 40.000 0.00 0.00 36.40 3.24
556 557 5.037385 GGAAGTTTTTCTTGTTCAGCAGAC 58.963 41.667 0.00 0.00 36.40 3.51
557 558 4.704540 TGGAAGTTTTTCTTGTTCAGCAGA 59.295 37.500 0.00 0.00 36.40 4.26
558 559 4.997565 TGGAAGTTTTTCTTGTTCAGCAG 58.002 39.130 0.00 0.00 36.40 4.24
559 560 5.596836 ATGGAAGTTTTTCTTGTTCAGCA 57.403 34.783 0.00 0.00 36.40 4.41
560 561 6.908870 AAATGGAAGTTTTTCTTGTTCAGC 57.091 33.333 0.00 0.00 36.40 4.26
591 593 5.459536 AGAGATACAGAATTAGATGCGCA 57.540 39.130 14.96 14.96 0.00 6.09
610 612 6.559521 CGCGTTGTGGAAATTTGTAAAAAGAG 60.560 38.462 0.00 0.00 0.00 2.85
692 695 1.737236 TCGTGCTGTGCCACATAAATC 59.263 47.619 0.00 0.00 35.47 2.17
737 740 2.301583 TCACATCGTTGTCCATTGAGGA 59.698 45.455 0.00 0.00 46.75 3.71
742 745 2.749076 CCATGTCACATCGTTGTCCATT 59.251 45.455 0.00 0.00 32.34 3.16
846 849 4.323477 TTTGCCCCCGAGGTGTCG 62.323 66.667 0.00 0.00 46.39 4.35
912 915 2.176792 GCAAAGGAAGGAAGCGCG 59.823 61.111 0.00 0.00 0.00 6.86
958 1008 0.804989 CACACTTTCCGGCTTGATCC 59.195 55.000 0.00 0.00 0.00 3.36
999 1049 0.533755 CCTTAGCTTCCTCCGCCATG 60.534 60.000 0.00 0.00 0.00 3.66
1086 1136 1.976112 GAGGTGTGTCTCCAGGTCC 59.024 63.158 0.00 0.00 0.00 4.46
1151 1210 3.019564 GCCTTGCTGATGAAACTACCAT 58.980 45.455 0.00 0.00 0.00 3.55
1153 1212 2.421424 CTGCCTTGCTGATGAAACTACC 59.579 50.000 0.00 0.00 0.00 3.18
1156 1232 2.283145 ACTGCCTTGCTGATGAAACT 57.717 45.000 0.00 0.00 0.00 2.66
1175 1251 7.050970 CATCCATGCCTGTTACTACTAGTTA 57.949 40.000 0.00 0.00 0.00 2.24
1200 1277 1.260825 CGAGCTAAGTCTGCATGCATG 59.739 52.381 22.97 22.70 0.00 4.06
1311 1388 1.446272 GTCCAGGTCGAAGAAGGCG 60.446 63.158 0.00 0.00 39.69 5.52
1389 1466 2.475466 GCAGGCCATCATCACACCG 61.475 63.158 5.01 0.00 0.00 4.94
1393 1470 0.104855 TACGAGCAGGCCATCATCAC 59.895 55.000 5.01 0.00 0.00 3.06
1394 1471 0.829990 TTACGAGCAGGCCATCATCA 59.170 50.000 5.01 0.00 0.00 3.07
1395 1472 1.953559 TTTACGAGCAGGCCATCATC 58.046 50.000 5.01 0.00 0.00 2.92
1407 1484 6.835914 AGCTTCTTCACATGAATTTTACGAG 58.164 36.000 0.00 0.00 33.01 4.18
1430 1537 9.846248 CCACTTAATCCTTTGAAACTAATTGAG 57.154 33.333 0.00 0.00 0.00 3.02
1505 1621 3.244181 GGAGGGTGTACCGAAACAAAGTA 60.244 47.826 0.00 0.00 46.96 2.24
1544 1660 9.896645 TTCTAATCTTCACATTTAATCTGCTCT 57.103 29.630 0.00 0.00 0.00 4.09
1557 1677 7.695055 TGAAGGGGTAATTTCTAATCTTCACA 58.305 34.615 0.00 0.00 35.79 3.58
1571 1691 7.126061 CCCTCTCTTTTTATTGAAGGGGTAAT 58.874 38.462 0.00 0.00 0.00 1.89
1590 1710 7.443477 GGATACAAGGACTATTTTACCCTCTC 58.557 42.308 0.00 0.00 0.00 3.20
1929 2143 2.322355 AAAGCCATCCATCTGTCTCG 57.678 50.000 0.00 0.00 0.00 4.04
2057 2271 7.275183 TGAAGCTATGCATATTTCACACTACT 58.725 34.615 21.03 2.34 0.00 2.57
2081 2295 4.572985 TTTTTGAAGAGCCATGTCACTG 57.427 40.909 0.00 0.00 0.00 3.66
2301 2595 4.967036 AGTAAGGATGAATAAGAGCCTGC 58.033 43.478 0.00 0.00 0.00 4.85
2483 4167 5.924356 TCAGAACTGAAAGATGGTGTAACA 58.076 37.500 1.79 0.00 35.79 2.41
2621 4317 0.539986 GGTTGCCTTCGGTCATCCTA 59.460 55.000 0.00 0.00 0.00 2.94
2723 4565 1.000060 GCTTCTGCAGTTCATTTGGCA 60.000 47.619 14.67 0.00 39.41 4.92
2726 4568 2.693797 ACGCTTCTGCAGTTCATTTG 57.306 45.000 14.67 1.32 39.64 2.32
2738 4580 2.146342 CATGAGTGGAACAACGCTTCT 58.854 47.619 0.00 0.00 44.16 2.85
2762 4604 3.369892 GGACACACATATCAGTTCAGGCT 60.370 47.826 0.00 0.00 0.00 4.58
2772 4614 4.769688 TCACAATCCTGGACACACATATC 58.230 43.478 0.00 0.00 0.00 1.63
2783 4627 0.682209 CCCCTTGCTCACAATCCTGG 60.682 60.000 0.00 0.00 34.61 4.45
2829 4673 1.554583 GGAAGCCCTCCTCGTCCTTT 61.555 60.000 0.00 0.00 41.61 3.11
2944 4959 0.599991 ACGAAGATGACAGCGTTGCA 60.600 50.000 0.00 0.00 32.42 4.08
2969 4984 6.163389 AGGTAATCCATCTGGTCTACAGTCC 61.163 48.000 0.00 0.00 41.23 3.85
2970 4985 4.896482 AGGTAATCCATCTGGTCTACAGTC 59.104 45.833 0.00 0.00 41.23 3.51
3033 5048 9.042008 GTGTACAACTTTATTCTCTGAACTTCA 57.958 33.333 0.00 0.00 0.00 3.02
3093 5108 5.743398 CACAGTAAATTCAACAACCACAGTG 59.257 40.000 0.00 0.00 0.00 3.66
3229 5245 9.460019 CTCTTCCCTCAAGAAAATAAATCTTCT 57.540 33.333 0.00 0.00 40.83 2.85
3230 5246 9.237187 ACTCTTCCCTCAAGAAAATAAATCTTC 57.763 33.333 0.00 0.00 40.83 2.87
3232 5248 9.674068 GTACTCTTCCCTCAAGAAAATAAATCT 57.326 33.333 0.00 0.00 40.83 2.40
3233 5249 9.674068 AGTACTCTTCCCTCAAGAAAATAAATC 57.326 33.333 0.00 0.00 40.83 2.17
3302 5318 3.854669 CTGACTAGCTGGGCCGGG 61.855 72.222 15.62 2.88 0.00 5.73
3315 5331 6.515272 ACATGGACCATATTTTTGTCTGAC 57.485 37.500 6.67 0.00 0.00 3.51
3317 5333 7.121168 AGTGTACATGGACCATATTTTTGTCTG 59.879 37.037 6.67 0.00 0.00 3.51
3334 5350 4.513692 TGTTTTTCCTTCCGAGTGTACATG 59.486 41.667 0.00 0.00 0.00 3.21
3358 5374 3.428316 GGAGTGAGTGGTCTTCTTCGATC 60.428 52.174 0.00 0.00 0.00 3.69
3512 5529 8.713737 TCTTCATGAGAATAATGTCTGTGAAG 57.286 34.615 14.69 14.69 40.61 3.02
3527 5544 8.969260 ATTATGCACAGTTATTCTTCATGAGA 57.031 30.769 0.00 0.00 0.00 3.27
3599 5623 9.540431 GCACATTTTAAATGACGCAAAATTATT 57.460 25.926 22.53 0.00 31.27 1.40
3606 5630 5.973651 TTTGCACATTTTAAATGACGCAA 57.026 30.435 29.15 29.15 38.30 4.85
3674 5703 8.610896 CAATTTTTAATGCAAGACTGTTTTCCA 58.389 29.630 0.00 0.00 0.00 3.53
3675 5704 8.069574 CCAATTTTTAATGCAAGACTGTTTTCC 58.930 33.333 0.00 0.00 0.00 3.13
3676 5705 8.611757 ACCAATTTTTAATGCAAGACTGTTTTC 58.388 29.630 0.00 0.00 0.00 2.29
3679 5708 7.271511 TCACCAATTTTTAATGCAAGACTGTT 58.728 30.769 0.00 0.00 0.00 3.16
3683 5712 9.949174 AAAATTCACCAATTTTTAATGCAAGAC 57.051 25.926 0.00 0.00 45.93 3.01
3892 5922 4.099419 TCTTCGCATAGGAGCACAAATAGA 59.901 41.667 0.00 0.00 0.00 1.98
3897 5927 2.760634 TTCTTCGCATAGGAGCACAA 57.239 45.000 0.00 0.00 0.00 3.33
3899 5929 3.003480 AGTTTTCTTCGCATAGGAGCAC 58.997 45.455 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.