Multiple sequence alignment - TraesCS2A01G366100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G366100 chr2A 100.000 2871 0 0 1 2871 610709592 610712462 0.000000e+00 5302.0
1 TraesCS2A01G366100 chr2A 93.694 1237 34 12 996 2219 587750781 587751986 0.000000e+00 1812.0
2 TraesCS2A01G366100 chr2A 97.177 673 13 4 2204 2871 587751925 587752596 0.000000e+00 1133.0
3 TraesCS2A01G366100 chr2A 87.288 236 16 4 751 972 587750484 587750719 1.020000e-64 257.0
4 TraesCS2A01G366100 chr2A 88.889 153 15 1 109 261 587742827 587742977 1.360000e-43 187.0
5 TraesCS2A01G366100 chr2A 89.855 138 14 0 264 401 587744273 587744410 8.170000e-41 178.0
6 TraesCS2A01G366100 chr2A 92.105 114 8 1 527 640 587750188 587750300 2.960000e-35 159.0
7 TraesCS2A01G366100 chr2A 100.000 61 0 0 2204 2264 610711750 610711810 2.340000e-21 113.0
8 TraesCS2A01G366100 chr2A 100.000 61 0 0 2159 2219 610711795 610711855 2.340000e-21 113.0
9 TraesCS2A01G366100 chr2D 91.126 1634 42 31 666 2219 445395962 445397572 0.000000e+00 2119.0
10 TraesCS2A01G366100 chr2D 97.608 669 14 2 2204 2871 445397512 445398179 0.000000e+00 1146.0
11 TraesCS2A01G366100 chr2D 93.196 485 18 6 111 591 445394709 445395182 0.000000e+00 699.0
12 TraesCS2A01G366100 chr2B 91.004 1245 52 26 996 2207 523760565 523761782 0.000000e+00 1624.0
13 TraesCS2A01G366100 chr2B 93.750 672 36 5 2204 2871 523761734 523762403 0.000000e+00 1003.0
14 TraesCS2A01G366100 chr2B 88.936 235 13 5 751 972 523760262 523760496 7.830000e-71 278.0
15 TraesCS2A01G366100 chr2B 93.694 111 5 1 109 219 523759614 523759722 6.360000e-37 165.0
16 TraesCS2A01G366100 chr2B 84.112 107 8 2 664 761 523760141 523760247 8.470000e-16 95.3
17 TraesCS2A01G366100 chr6D 81.341 552 68 23 997 1532 277100769 277100237 1.590000e-112 416.0
18 TraesCS2A01G366100 chr6A 81.413 538 75 19 997 1529 398253192 398253709 1.590000e-112 416.0
19 TraesCS2A01G366100 chr6A 100.000 50 0 0 22 71 584591912 584591961 3.050000e-15 93.5
20 TraesCS2A01G366100 chr6B 80.657 548 73 24 997 1529 439022262 439021733 7.460000e-106 394.0
21 TraesCS2A01G366100 chr6B 91.398 93 6 2 1195 1287 317213282 317213372 3.000000e-25 126.0
22 TraesCS2A01G366100 chr6B 100.000 50 0 0 21 70 216621877 216621828 3.050000e-15 93.5
23 TraesCS2A01G366100 chr7B 79.421 311 39 15 1195 1505 692827474 692827189 2.260000e-46 196.0
24 TraesCS2A01G366100 chr7B 78.457 311 42 15 1195 1505 226424494 226424209 2.270000e-41 180.0
25 TraesCS2A01G366100 chr7B 80.976 205 29 7 1301 1505 692796978 692796784 1.380000e-33 154.0
26 TraesCS2A01G366100 chr7A 77.558 303 44 9 1203 1505 709417751 709417473 8.230000e-36 161.0
27 TraesCS2A01G366100 chr7A 91.398 93 6 2 1195 1287 17370095 17370005 3.000000e-25 126.0
28 TraesCS2A01G366100 chr3B 77.632 304 43 10 1203 1505 452907784 452907505 8.230000e-36 161.0
29 TraesCS2A01G366100 chr3A 77.244 312 45 14 1195 1505 617439709 617439423 2.960000e-35 159.0
30 TraesCS2A01G366100 chr5A 92.135 89 6 1 1199 1287 23904454 23904541 1.080000e-24 124.0
31 TraesCS2A01G366100 chr5B 96.296 54 2 0 18 71 57443329 57443382 3.940000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G366100 chr2A 610709592 610712462 2870 False 1842.666667 5302 100.000000 1 2871 3 chr2A.!!$F3 2870
1 TraesCS2A01G366100 chr2A 587750188 587752596 2408 False 840.250000 1812 92.566000 527 2871 4 chr2A.!!$F2 2344
2 TraesCS2A01G366100 chr2D 445394709 445398179 3470 False 1321.333333 2119 93.976667 111 2871 3 chr2D.!!$F1 2760
3 TraesCS2A01G366100 chr2B 523759614 523762403 2789 False 633.060000 1624 90.299200 109 2871 5 chr2B.!!$F1 2762
4 TraesCS2A01G366100 chr6D 277100237 277100769 532 True 416.000000 416 81.341000 997 1532 1 chr6D.!!$R1 535
5 TraesCS2A01G366100 chr6A 398253192 398253709 517 False 416.000000 416 81.413000 997 1529 1 chr6A.!!$F1 532
6 TraesCS2A01G366100 chr6B 439021733 439022262 529 True 394.000000 394 80.657000 997 1529 1 chr6B.!!$R2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 500 0.107993 TCCGTCCTCTGATCGTACGT 60.108 55.0 16.05 2.33 31.87 3.57 F
513 530 0.179111 TTCCTACAAGCCGCTCGATG 60.179 55.0 0.00 0.00 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1545 2430 0.103208 GATAGCAGGGAGACACGTGG 59.897 60.0 21.57 0.44 0.00 4.94 R
2244 3181 0.250081 TGCTGTGCACGGTGATTACA 60.250 50.0 26.00 11.97 31.71 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.801114 AAAAAGAAAGAGCGCTTTGGT 57.199 38.095 20.64 4.40 44.10 3.67
36 37 3.801114 AAAAGAAAGAGCGCTTTGGTT 57.199 38.095 20.64 10.32 44.10 3.67
37 38 2.781945 AAGAAAGAGCGCTTTGGTTG 57.218 45.000 20.64 0.00 44.10 3.77
38 39 1.680338 AGAAAGAGCGCTTTGGTTGT 58.320 45.000 20.64 0.00 44.10 3.32
39 40 2.846193 AGAAAGAGCGCTTTGGTTGTA 58.154 42.857 20.64 0.00 44.10 2.41
40 41 2.548480 AGAAAGAGCGCTTTGGTTGTAC 59.452 45.455 20.64 3.90 44.10 2.90
41 42 1.235724 AAGAGCGCTTTGGTTGTACC 58.764 50.000 13.26 0.00 39.22 3.34
42 43 0.605589 AGAGCGCTTTGGTTGTACCC 60.606 55.000 13.26 0.00 37.50 3.69
43 44 1.583495 GAGCGCTTTGGTTGTACCCC 61.583 60.000 13.26 0.00 37.50 4.95
44 45 1.899534 GCGCTTTGGTTGTACCCCA 60.900 57.895 0.00 0.00 37.50 4.96
45 46 1.953772 CGCTTTGGTTGTACCCCAC 59.046 57.895 1.03 0.00 37.50 4.61
46 47 1.520600 CGCTTTGGTTGTACCCCACC 61.521 60.000 1.03 0.50 37.50 4.61
47 48 0.468400 GCTTTGGTTGTACCCCACCA 60.468 55.000 4.88 4.88 37.50 4.17
48 49 1.616159 CTTTGGTTGTACCCCACCAG 58.384 55.000 8.29 2.20 37.50 4.00
49 50 0.468400 TTTGGTTGTACCCCACCAGC 60.468 55.000 8.29 0.00 37.50 4.85
50 51 2.359478 GGTTGTACCCCACCAGCG 60.359 66.667 0.00 0.00 30.04 5.18
51 52 2.745037 GTTGTACCCCACCAGCGA 59.255 61.111 0.00 0.00 0.00 4.93
52 53 1.071814 GTTGTACCCCACCAGCGAA 59.928 57.895 0.00 0.00 0.00 4.70
53 54 0.322187 GTTGTACCCCACCAGCGAAT 60.322 55.000 0.00 0.00 0.00 3.34
54 55 0.322098 TTGTACCCCACCAGCGAATG 60.322 55.000 0.00 0.00 0.00 2.67
55 56 1.298667 GTACCCCACCAGCGAATGT 59.701 57.895 0.00 0.00 0.00 2.71
56 57 0.743345 GTACCCCACCAGCGAATGTC 60.743 60.000 0.00 0.00 0.00 3.06
57 58 2.233605 TACCCCACCAGCGAATGTCG 62.234 60.000 0.00 0.00 43.89 4.35
58 59 2.047274 CCCACCAGCGAATGTCGT 60.047 61.111 0.00 0.00 42.81 4.34
59 60 1.671054 CCCACCAGCGAATGTCGTT 60.671 57.895 0.00 0.00 42.81 3.85
60 61 0.390603 CCCACCAGCGAATGTCGTTA 60.391 55.000 0.00 0.00 42.81 3.18
61 62 0.999406 CCACCAGCGAATGTCGTTAG 59.001 55.000 0.00 0.00 42.81 2.34
62 63 1.403647 CCACCAGCGAATGTCGTTAGA 60.404 52.381 0.00 0.00 42.81 2.10
63 64 2.540515 CACCAGCGAATGTCGTTAGAT 58.459 47.619 0.00 0.00 42.81 1.98
64 65 2.535984 CACCAGCGAATGTCGTTAGATC 59.464 50.000 0.00 0.00 42.81 2.75
65 66 2.165641 ACCAGCGAATGTCGTTAGATCA 59.834 45.455 0.00 0.00 42.81 2.92
66 67 2.535984 CCAGCGAATGTCGTTAGATCAC 59.464 50.000 0.00 0.00 42.81 3.06
67 68 2.535984 CAGCGAATGTCGTTAGATCACC 59.464 50.000 0.00 0.00 42.81 4.02
68 69 2.165641 AGCGAATGTCGTTAGATCACCA 59.834 45.455 0.00 0.00 42.81 4.17
69 70 2.927477 GCGAATGTCGTTAGATCACCAA 59.073 45.455 0.00 0.00 42.81 3.67
70 71 3.241995 GCGAATGTCGTTAGATCACCAAC 60.242 47.826 0.00 0.00 42.81 3.77
71 72 4.174009 CGAATGTCGTTAGATCACCAACT 58.826 43.478 0.00 0.00 34.72 3.16
72 73 4.625742 CGAATGTCGTTAGATCACCAACTT 59.374 41.667 0.00 0.00 34.72 2.66
73 74 5.220228 CGAATGTCGTTAGATCACCAACTTC 60.220 44.000 0.00 0.00 34.72 3.01
74 75 3.921677 TGTCGTTAGATCACCAACTTCC 58.078 45.455 0.00 0.00 0.00 3.46
75 76 3.259902 GTCGTTAGATCACCAACTTCCC 58.740 50.000 0.00 0.00 0.00 3.97
76 77 3.056035 GTCGTTAGATCACCAACTTCCCT 60.056 47.826 0.00 0.00 0.00 4.20
77 78 3.194968 TCGTTAGATCACCAACTTCCCTC 59.805 47.826 0.00 0.00 0.00 4.30
78 79 3.195825 CGTTAGATCACCAACTTCCCTCT 59.804 47.826 0.00 0.00 0.00 3.69
79 80 4.508662 GTTAGATCACCAACTTCCCTCTG 58.491 47.826 0.00 0.00 0.00 3.35
80 81 1.280421 AGATCACCAACTTCCCTCTGC 59.720 52.381 0.00 0.00 0.00 4.26
81 82 1.003580 GATCACCAACTTCCCTCTGCA 59.996 52.381 0.00 0.00 0.00 4.41
82 83 0.397941 TCACCAACTTCCCTCTGCAG 59.602 55.000 7.63 7.63 0.00 4.41
83 84 0.109342 CACCAACTTCCCTCTGCAGT 59.891 55.000 14.67 0.00 0.00 4.40
84 85 1.347707 CACCAACTTCCCTCTGCAGTA 59.652 52.381 14.67 0.00 0.00 2.74
85 86 1.625818 ACCAACTTCCCTCTGCAGTAG 59.374 52.381 14.67 9.71 0.00 2.57
86 87 1.902508 CCAACTTCCCTCTGCAGTAGA 59.097 52.381 14.67 6.30 0.00 2.59
87 88 2.503356 CCAACTTCCCTCTGCAGTAGAT 59.497 50.000 14.67 0.00 34.21 1.98
88 89 3.431486 CCAACTTCCCTCTGCAGTAGATC 60.431 52.174 14.67 0.00 34.21 2.75
89 90 2.028130 ACTTCCCTCTGCAGTAGATCG 58.972 52.381 14.67 2.61 34.21 3.69
90 91 2.302260 CTTCCCTCTGCAGTAGATCGA 58.698 52.381 14.67 0.00 34.21 3.59
91 92 2.666272 TCCCTCTGCAGTAGATCGAT 57.334 50.000 14.67 0.00 34.21 3.59
92 93 2.509569 TCCCTCTGCAGTAGATCGATC 58.490 52.381 17.91 17.91 34.21 3.69
93 94 2.107378 TCCCTCTGCAGTAGATCGATCT 59.893 50.000 29.58 29.58 40.86 2.75
94 95 2.228582 CCCTCTGCAGTAGATCGATCTG 59.771 54.545 33.22 20.69 37.76 2.90
95 96 3.145286 CCTCTGCAGTAGATCGATCTGA 58.855 50.000 33.22 20.77 37.76 3.27
96 97 3.189080 CCTCTGCAGTAGATCGATCTGAG 59.811 52.174 33.22 26.98 37.76 3.35
97 98 3.814625 TCTGCAGTAGATCGATCTGAGT 58.185 45.455 33.22 18.51 37.76 3.41
98 99 3.812609 TCTGCAGTAGATCGATCTGAGTC 59.187 47.826 33.22 20.59 37.76 3.36
99 100 3.545703 TGCAGTAGATCGATCTGAGTCA 58.454 45.455 33.22 22.52 37.76 3.41
100 101 3.563390 TGCAGTAGATCGATCTGAGTCAG 59.437 47.826 33.22 14.36 37.76 3.51
101 102 3.812609 GCAGTAGATCGATCTGAGTCAGA 59.187 47.826 33.22 24.66 44.99 3.27
102 103 4.083855 GCAGTAGATCGATCTGAGTCAGAG 60.084 50.000 33.22 14.81 44.08 3.35
103 104 5.056480 CAGTAGATCGATCTGAGTCAGAGT 58.944 45.833 33.22 14.59 44.08 3.24
104 105 5.177511 CAGTAGATCGATCTGAGTCAGAGTC 59.822 48.000 33.22 20.48 44.08 3.36
105 106 3.130633 AGATCGATCTGAGTCAGAGTCG 58.869 50.000 29.46 29.46 44.08 4.18
106 107 2.388310 TCGATCTGAGTCAGAGTCGT 57.612 50.000 31.35 18.75 44.08 4.34
107 108 2.701107 TCGATCTGAGTCAGAGTCGTT 58.299 47.619 31.35 18.47 44.08 3.85
230 231 2.065993 AGAATATCGGCGTTCCATCG 57.934 50.000 6.85 0.00 0.00 3.84
353 358 4.435253 CCTGCGATGAATATGCGAGATTTC 60.435 45.833 0.00 0.00 0.00 2.17
354 359 3.433274 TGCGATGAATATGCGAGATTTCC 59.567 43.478 0.00 0.00 0.00 3.13
355 360 3.181516 GCGATGAATATGCGAGATTTCCC 60.182 47.826 0.00 0.00 0.00 3.97
356 361 4.248859 CGATGAATATGCGAGATTTCCCT 58.751 43.478 0.00 0.00 0.00 4.20
387 392 2.811431 CTGCACCGAGTTAAATGACCAA 59.189 45.455 0.00 0.00 0.00 3.67
392 397 3.181437 ACCGAGTTAAATGACCAAACCCT 60.181 43.478 0.00 0.00 0.00 4.34
424 440 1.550524 GTCACAGTGCACCTATGAGGA 59.449 52.381 14.63 6.43 37.67 3.71
425 441 1.827344 TCACAGTGCACCTATGAGGAG 59.173 52.381 14.63 0.00 37.67 3.69
426 442 1.134580 CACAGTGCACCTATGAGGAGG 60.135 57.143 14.63 0.00 37.67 4.30
427 443 0.179062 CAGTGCACCTATGAGGAGGC 60.179 60.000 14.63 3.49 40.65 4.70
428 444 0.326048 AGTGCACCTATGAGGAGGCT 60.326 55.000 14.63 0.00 40.65 4.58
430 446 1.974236 GTGCACCTATGAGGAGGCTAT 59.026 52.381 5.22 0.00 40.65 2.97
431 447 1.973515 TGCACCTATGAGGAGGCTATG 59.026 52.381 0.00 0.00 40.65 2.23
432 448 2.251818 GCACCTATGAGGAGGCTATGA 58.748 52.381 0.00 0.00 40.65 2.15
433 449 2.028567 GCACCTATGAGGAGGCTATGAC 60.029 54.545 0.00 0.00 40.65 3.06
435 451 2.183679 CCTATGAGGAGGCTATGACCC 58.816 57.143 0.00 0.00 37.67 4.46
444 461 0.252197 GGCTATGACCCACGTTCCTT 59.748 55.000 0.00 0.00 0.00 3.36
446 463 2.007608 GCTATGACCCACGTTCCTTTC 58.992 52.381 0.00 0.00 0.00 2.62
449 466 0.534203 TGACCCACGTTCCTTTCTGC 60.534 55.000 0.00 0.00 0.00 4.26
454 471 1.581934 CACGTTCCTTTCTGCACTCA 58.418 50.000 0.00 0.00 0.00 3.41
476 493 1.032657 CCTCACGTCCGTCCTCTGAT 61.033 60.000 0.00 0.00 0.00 2.90
483 500 0.107993 TCCGTCCTCTGATCGTACGT 60.108 55.000 16.05 2.33 31.87 3.57
499 516 3.429043 CGTAGCACGGCTTTTCCTA 57.571 52.632 3.71 0.00 40.44 2.94
513 530 0.179111 TTCCTACAAGCCGCTCGATG 60.179 55.000 0.00 0.00 0.00 3.84
514 531 2.240500 CCTACAAGCCGCTCGATGC 61.241 63.158 0.00 0.00 38.57 3.91
515 532 2.202878 TACAAGCCGCTCGATGCC 60.203 61.111 0.00 0.00 38.78 4.40
518 535 4.880537 AAGCCGCTCGATGCCTCG 62.881 66.667 4.89 4.89 46.41 4.63
645 719 0.236187 TTCGTACATGCACGCAAACC 59.764 50.000 13.73 0.00 41.67 3.27
647 721 0.452618 CGTACATGCACGCAAACCAG 60.453 55.000 5.37 0.00 34.78 4.00
696 1435 1.941812 CAACGTGACAACTGGGAGC 59.058 57.895 0.00 0.00 0.00 4.70
697 1436 0.532862 CAACGTGACAACTGGGAGCT 60.533 55.000 0.00 0.00 0.00 4.09
698 1437 0.249911 AACGTGACAACTGGGAGCTC 60.250 55.000 4.71 4.71 0.00 4.09
699 1438 1.367471 CGTGACAACTGGGAGCTCA 59.633 57.895 17.19 0.00 0.00 4.26
700 1439 0.668706 CGTGACAACTGGGAGCTCAG 60.669 60.000 17.19 8.55 40.40 3.35
727 1475 2.566010 CCACCGCACAATTTCCCG 59.434 61.111 0.00 0.00 0.00 5.14
799 1578 0.815095 AAATCAAATTCCCGGTCGCC 59.185 50.000 0.00 0.00 0.00 5.54
819 1598 0.969917 ACGAGAGGCACTGCTCATCT 60.970 55.000 0.00 2.59 41.55 2.90
820 1599 0.248990 CGAGAGGCACTGCTCATCTC 60.249 60.000 15.68 15.68 41.55 2.75
821 1600 0.822811 GAGAGGCACTGCTCATCTCA 59.177 55.000 18.58 0.00 41.55 3.27
823 1602 0.536260 GAGGCACTGCTCATCTCAGT 59.464 55.000 0.00 0.00 44.87 3.41
990 1783 3.260483 GCGATCAGCTGCACGAGG 61.260 66.667 27.09 8.91 44.04 4.63
991 1784 2.491621 CGATCAGCTGCACGAGGA 59.508 61.111 21.44 0.00 0.00 3.71
992 1785 1.067084 CGATCAGCTGCACGAGGAT 59.933 57.895 21.44 4.25 0.00 3.24
993 1786 0.938637 CGATCAGCTGCACGAGGATC 60.939 60.000 21.44 11.57 0.00 3.36
994 1787 0.599728 GATCAGCTGCACGAGGATCC 60.600 60.000 9.47 2.48 0.00 3.36
1524 2409 2.678836 CTCTGACTACGAGTCCAACGAT 59.321 50.000 11.01 0.00 44.44 3.73
1545 2430 2.351244 GGCAAGGGGCTAGGCAAAC 61.351 63.158 19.14 7.66 44.01 2.93
1630 2530 0.410270 AGGGTTCTCCGTCTCCTCTT 59.590 55.000 0.00 0.00 41.52 2.85
1677 2577 0.242825 GACATCGACCTGTTCCACGA 59.757 55.000 0.00 0.00 39.01 4.35
1678 2578 0.243907 ACATCGACCTGTTCCACGAG 59.756 55.000 0.00 0.00 38.12 4.18
1679 2579 0.243907 CATCGACCTGTTCCACGAGT 59.756 55.000 0.00 0.00 38.12 4.18
1680 2580 1.471287 CATCGACCTGTTCCACGAGTA 59.529 52.381 0.00 0.00 38.12 2.59
1681 2581 1.830279 TCGACCTGTTCCACGAGTAT 58.170 50.000 0.00 0.00 0.00 2.12
1682 2582 1.471287 TCGACCTGTTCCACGAGTATG 59.529 52.381 0.00 0.00 0.00 2.39
1858 2758 3.592546 GGACTACCTCCTCGTTCCT 57.407 57.895 0.00 0.00 35.89 3.36
1938 2853 4.549458 AGTAAACTAATACGCGTGTGTGT 58.451 39.130 24.59 14.77 42.59 3.72
1999 2914 3.726782 CGCTTAGTTGCCGTGGAAAATAC 60.727 47.826 0.00 0.00 0.00 1.89
2000 2915 3.189702 GCTTAGTTGCCGTGGAAAATACA 59.810 43.478 0.00 0.00 0.00 2.29
2001 2916 4.671766 GCTTAGTTGCCGTGGAAAATACAG 60.672 45.833 0.00 0.00 0.00 2.74
2083 3001 8.946085 AGTGTAATATACTGTGGAAAACATGTG 58.054 33.333 0.00 0.00 38.39 3.21
2098 3016 4.670896 ACATGTGCTGCTTTTAAGGTTT 57.329 36.364 0.00 0.00 0.00 3.27
2099 3017 5.782893 ACATGTGCTGCTTTTAAGGTTTA 57.217 34.783 0.00 0.00 0.00 2.01
2128 3064 3.057806 GTGGAAAATTCAACCACCCGTAG 60.058 47.826 13.97 0.00 45.53 3.51
2212 3149 2.955614 ACAGTACTGTAATCACCGTGC 58.044 47.619 26.91 0.00 42.90 5.34
2213 3150 2.297880 ACAGTACTGTAATCACCGTGCA 59.702 45.455 26.91 0.00 42.90 4.57
2214 3151 2.666508 CAGTACTGTAATCACCGTGCAC 59.333 50.000 15.06 6.82 29.02 4.57
2215 3152 2.297880 AGTACTGTAATCACCGTGCACA 59.702 45.455 18.64 0.00 29.02 4.57
2216 3153 1.795768 ACTGTAATCACCGTGCACAG 58.204 50.000 18.64 18.55 41.83 3.66
2217 3154 0.443869 CTGTAATCACCGTGCACAGC 59.556 55.000 18.64 0.00 31.14 4.40
2218 3155 0.250081 TGTAATCACCGTGCACAGCA 60.250 50.000 18.64 0.00 35.60 4.41
2219 3156 1.086696 GTAATCACCGTGCACAGCAT 58.913 50.000 18.64 0.00 41.91 3.79
2220 3157 1.085893 TAATCACCGTGCACAGCATG 58.914 50.000 18.64 8.85 44.25 4.06
2232 3169 3.466712 CACAGCATGCTTGAACTACAG 57.533 47.619 19.98 5.86 42.53 2.74
2233 3170 1.808945 ACAGCATGCTTGAACTACAGC 59.191 47.619 19.98 0.00 42.53 4.40
2234 3171 1.131883 CAGCATGCTTGAACTACAGCC 59.868 52.381 19.98 0.00 0.00 4.85
2235 3172 1.167851 GCATGCTTGAACTACAGCCA 58.832 50.000 11.37 0.00 0.00 4.75
2236 3173 1.747355 GCATGCTTGAACTACAGCCAT 59.253 47.619 11.37 0.00 0.00 4.40
2237 3174 2.945008 GCATGCTTGAACTACAGCCATA 59.055 45.455 11.37 0.00 0.00 2.74
2238 3175 3.242870 GCATGCTTGAACTACAGCCATAC 60.243 47.826 11.37 0.00 0.00 2.39
2239 3176 3.694043 TGCTTGAACTACAGCCATACA 57.306 42.857 0.00 0.00 0.00 2.29
2240 3177 3.599343 TGCTTGAACTACAGCCATACAG 58.401 45.455 0.00 0.00 0.00 2.74
2241 3178 3.007940 TGCTTGAACTACAGCCATACAGT 59.992 43.478 0.00 0.00 0.00 3.55
2242 3179 4.221924 TGCTTGAACTACAGCCATACAGTA 59.778 41.667 0.00 0.00 0.00 2.74
2243 3180 4.567159 GCTTGAACTACAGCCATACAGTAC 59.433 45.833 0.00 0.00 0.00 2.73
2244 3181 5.624738 GCTTGAACTACAGCCATACAGTACT 60.625 44.000 0.00 0.00 0.00 2.73
2245 3182 5.324784 TGAACTACAGCCATACAGTACTG 57.675 43.478 21.44 21.44 36.22 2.74
2246 3183 4.770531 TGAACTACAGCCATACAGTACTGT 59.229 41.667 30.13 30.13 46.87 3.55
2428 3369 8.365399 TGATTGCGATATTTCAGGTTACTAAG 57.635 34.615 0.00 0.00 0.00 2.18
2506 3448 4.141846 TGGTGGATGCTCTTCAGTAAGATC 60.142 45.833 0.00 0.00 40.92 2.75
2744 3686 1.026718 CGGGTGAATCTGCCTTGTCC 61.027 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.801114 ACCAAAGCGCTCTTTCTTTTT 57.199 38.095 12.06 0.00 40.35 1.94
16 17 3.119137 ACAACCAAAGCGCTCTTTCTTTT 60.119 39.130 12.06 0.00 40.35 2.27
17 18 2.427095 ACAACCAAAGCGCTCTTTCTTT 59.573 40.909 12.06 0.00 40.35 2.52
18 19 2.024414 ACAACCAAAGCGCTCTTTCTT 58.976 42.857 12.06 0.00 40.35 2.52
19 20 1.680338 ACAACCAAAGCGCTCTTTCT 58.320 45.000 12.06 0.00 40.35 2.52
20 21 2.350484 GGTACAACCAAAGCGCTCTTTC 60.350 50.000 12.06 0.00 40.35 2.62
21 22 1.607148 GGTACAACCAAAGCGCTCTTT 59.393 47.619 12.06 0.00 42.92 2.52
22 23 1.235724 GGTACAACCAAAGCGCTCTT 58.764 50.000 12.06 4.51 38.42 2.85
23 24 0.605589 GGGTACAACCAAAGCGCTCT 60.606 55.000 12.06 0.00 41.02 4.09
24 25 1.583495 GGGGTACAACCAAAGCGCTC 61.583 60.000 12.06 0.00 41.02 5.03
25 26 1.602605 GGGGTACAACCAAAGCGCT 60.603 57.895 2.64 2.64 41.02 5.92
26 27 1.899534 TGGGGTACAACCAAAGCGC 60.900 57.895 0.00 0.00 41.02 5.92
27 28 1.520600 GGTGGGGTACAACCAAAGCG 61.521 60.000 9.79 0.00 41.02 4.68
28 29 0.468400 TGGTGGGGTACAACCAAAGC 60.468 55.000 9.79 0.43 41.02 3.51
29 30 1.616159 CTGGTGGGGTACAACCAAAG 58.384 55.000 9.79 7.49 41.02 2.77
30 31 0.468400 GCTGGTGGGGTACAACCAAA 60.468 55.000 9.79 2.20 41.02 3.28
31 32 1.151908 GCTGGTGGGGTACAACCAA 59.848 57.895 9.79 0.00 41.02 3.67
32 33 2.840576 GCTGGTGGGGTACAACCA 59.159 61.111 12.24 12.24 41.02 3.67
33 34 2.359478 CGCTGGTGGGGTACAACC 60.359 66.667 0.00 0.00 35.29 3.77
34 35 0.322187 ATTCGCTGGTGGGGTACAAC 60.322 55.000 0.00 0.00 37.28 3.32
35 36 0.322098 CATTCGCTGGTGGGGTACAA 60.322 55.000 0.00 0.00 0.00 2.41
36 37 1.298340 CATTCGCTGGTGGGGTACA 59.702 57.895 0.00 0.00 0.00 2.90
37 38 0.743345 GACATTCGCTGGTGGGGTAC 60.743 60.000 0.00 0.00 0.00 3.34
38 39 1.600107 GACATTCGCTGGTGGGGTA 59.400 57.895 0.00 0.00 0.00 3.69
39 40 2.351276 GACATTCGCTGGTGGGGT 59.649 61.111 0.00 0.00 0.00 4.95
40 41 2.819595 CGACATTCGCTGGTGGGG 60.820 66.667 0.00 0.00 31.14 4.96
41 42 0.390603 TAACGACATTCGCTGGTGGG 60.391 55.000 0.00 0.00 45.12 4.61
42 43 0.999406 CTAACGACATTCGCTGGTGG 59.001 55.000 0.00 0.00 45.12 4.61
43 44 1.990799 TCTAACGACATTCGCTGGTG 58.009 50.000 0.00 0.00 45.12 4.17
44 45 2.165641 TGATCTAACGACATTCGCTGGT 59.834 45.455 0.00 0.00 45.12 4.00
45 46 2.535984 GTGATCTAACGACATTCGCTGG 59.464 50.000 0.00 0.00 45.12 4.85
46 47 2.535984 GGTGATCTAACGACATTCGCTG 59.464 50.000 0.00 0.00 45.12 5.18
47 48 2.165641 TGGTGATCTAACGACATTCGCT 59.834 45.455 0.00 0.00 45.12 4.93
48 49 2.536365 TGGTGATCTAACGACATTCGC 58.464 47.619 0.00 0.00 45.12 4.70
49 50 4.174009 AGTTGGTGATCTAACGACATTCG 58.826 43.478 0.00 0.00 46.93 3.34
50 51 5.063564 GGAAGTTGGTGATCTAACGACATTC 59.936 44.000 0.00 0.92 39.48 2.67
51 52 4.935808 GGAAGTTGGTGATCTAACGACATT 59.064 41.667 0.00 0.00 39.48 2.71
52 53 4.504858 GGAAGTTGGTGATCTAACGACAT 58.495 43.478 0.00 0.00 39.48 3.06
53 54 3.306502 GGGAAGTTGGTGATCTAACGACA 60.307 47.826 0.00 0.00 39.48 4.35
54 55 3.056035 AGGGAAGTTGGTGATCTAACGAC 60.056 47.826 0.00 0.00 39.48 4.34
55 56 3.170717 AGGGAAGTTGGTGATCTAACGA 58.829 45.455 0.00 0.00 39.48 3.85
56 57 3.195825 AGAGGGAAGTTGGTGATCTAACG 59.804 47.826 0.00 0.00 39.48 3.18
57 58 4.508662 CAGAGGGAAGTTGGTGATCTAAC 58.491 47.826 0.00 0.00 35.68 2.34
58 59 3.055094 GCAGAGGGAAGTTGGTGATCTAA 60.055 47.826 0.00 0.00 0.00 2.10
59 60 2.501723 GCAGAGGGAAGTTGGTGATCTA 59.498 50.000 0.00 0.00 0.00 1.98
60 61 1.280421 GCAGAGGGAAGTTGGTGATCT 59.720 52.381 0.00 0.00 0.00 2.75
61 62 1.003580 TGCAGAGGGAAGTTGGTGATC 59.996 52.381 0.00 0.00 0.00 2.92
62 63 1.004044 CTGCAGAGGGAAGTTGGTGAT 59.996 52.381 8.42 0.00 0.00 3.06
63 64 0.397941 CTGCAGAGGGAAGTTGGTGA 59.602 55.000 8.42 0.00 0.00 4.02
64 65 0.109342 ACTGCAGAGGGAAGTTGGTG 59.891 55.000 23.35 0.00 0.00 4.17
65 66 1.625818 CTACTGCAGAGGGAAGTTGGT 59.374 52.381 23.35 0.00 0.00 3.67
66 67 1.902508 TCTACTGCAGAGGGAAGTTGG 59.097 52.381 23.35 0.00 0.00 3.77
67 68 3.736433 CGATCTACTGCAGAGGGAAGTTG 60.736 52.174 23.35 0.00 36.48 3.16
68 69 2.428890 CGATCTACTGCAGAGGGAAGTT 59.571 50.000 23.35 4.61 36.48 2.66
69 70 2.028130 CGATCTACTGCAGAGGGAAGT 58.972 52.381 23.35 0.00 36.48 3.01
70 71 2.302260 TCGATCTACTGCAGAGGGAAG 58.698 52.381 23.35 9.33 36.48 3.46
71 72 2.437085 TCGATCTACTGCAGAGGGAA 57.563 50.000 23.35 0.87 36.48 3.97
72 73 2.107378 AGATCGATCTACTGCAGAGGGA 59.893 50.000 26.27 14.86 36.48 4.20
73 74 2.228582 CAGATCGATCTACTGCAGAGGG 59.771 54.545 26.87 7.57 36.48 4.30
74 75 3.145286 TCAGATCGATCTACTGCAGAGG 58.855 50.000 26.87 11.83 36.48 3.69
75 76 3.814842 ACTCAGATCGATCTACTGCAGAG 59.185 47.826 26.87 25.89 36.48 3.35
76 77 3.812609 GACTCAGATCGATCTACTGCAGA 59.187 47.826 26.87 17.20 34.85 4.26
77 78 3.563390 TGACTCAGATCGATCTACTGCAG 59.437 47.826 26.87 13.48 34.85 4.41
78 79 3.545703 TGACTCAGATCGATCTACTGCA 58.454 45.455 26.87 18.80 34.85 4.41
79 80 3.812609 TCTGACTCAGATCGATCTACTGC 59.187 47.826 26.87 16.68 35.39 4.40
80 81 5.056480 ACTCTGACTCAGATCGATCTACTG 58.944 45.833 26.87 20.11 39.92 2.74
81 82 5.290493 ACTCTGACTCAGATCGATCTACT 57.710 43.478 26.87 12.37 39.92 2.57
82 83 4.149922 CGACTCTGACTCAGATCGATCTAC 59.850 50.000 26.87 17.67 39.92 2.59
83 84 4.202172 ACGACTCTGACTCAGATCGATCTA 60.202 45.833 26.87 14.35 39.92 1.98
84 85 3.130633 CGACTCTGACTCAGATCGATCT 58.869 50.000 22.32 22.32 39.92 2.75
85 86 2.869801 ACGACTCTGACTCAGATCGATC 59.130 50.000 28.54 17.91 39.92 3.69
86 87 2.912771 ACGACTCTGACTCAGATCGAT 58.087 47.619 28.54 18.30 39.92 3.59
87 88 2.388310 ACGACTCTGACTCAGATCGA 57.612 50.000 28.54 0.00 39.92 3.59
88 89 2.223157 GGAACGACTCTGACTCAGATCG 60.223 54.545 24.31 24.31 39.92 3.69
89 90 2.098443 GGGAACGACTCTGACTCAGATC 59.902 54.545 9.26 8.34 39.92 2.75
90 91 2.096248 GGGAACGACTCTGACTCAGAT 58.904 52.381 9.26 0.59 39.92 2.90
91 92 1.202891 TGGGAACGACTCTGACTCAGA 60.203 52.381 8.50 8.50 38.25 3.27
92 93 1.248486 TGGGAACGACTCTGACTCAG 58.752 55.000 0.00 0.00 0.00 3.35
93 94 1.699730 TTGGGAACGACTCTGACTCA 58.300 50.000 0.00 0.00 0.00 3.41
94 95 2.814280 TTTGGGAACGACTCTGACTC 57.186 50.000 0.00 0.00 0.00 3.36
95 96 3.771577 ATTTTGGGAACGACTCTGACT 57.228 42.857 0.00 0.00 0.00 3.41
96 97 4.267928 CGATATTTTGGGAACGACTCTGAC 59.732 45.833 0.00 0.00 0.00 3.51
97 98 4.081862 ACGATATTTTGGGAACGACTCTGA 60.082 41.667 0.00 0.00 0.00 3.27
98 99 4.181578 ACGATATTTTGGGAACGACTCTG 58.818 43.478 0.00 0.00 0.00 3.35
99 100 4.430908 GACGATATTTTGGGAACGACTCT 58.569 43.478 0.00 0.00 0.00 3.24
100 101 3.554731 GGACGATATTTTGGGAACGACTC 59.445 47.826 0.00 0.00 0.00 3.36
101 102 3.528532 GGACGATATTTTGGGAACGACT 58.471 45.455 0.00 0.00 0.00 4.18
102 103 2.610833 GGGACGATATTTTGGGAACGAC 59.389 50.000 0.00 0.00 0.00 4.34
103 104 2.908916 GGGACGATATTTTGGGAACGA 58.091 47.619 0.00 0.00 0.00 3.85
230 231 4.481112 CGCTGTTTGCATCCGGCC 62.481 66.667 0.00 0.00 43.89 6.13
234 235 2.240612 GACGGTCGCTGTTTGCATCC 62.241 60.000 0.00 0.00 43.06 3.51
387 392 2.056906 GACAGCCACCTCACAGGGTT 62.057 60.000 0.00 0.00 40.58 4.11
392 397 1.337384 ACTGTGACAGCCACCTCACA 61.337 55.000 13.37 0.87 45.09 3.58
424 440 0.617820 AGGAACGTGGGTCATAGCCT 60.618 55.000 0.00 0.00 36.53 4.58
425 441 0.252197 AAGGAACGTGGGTCATAGCC 59.748 55.000 0.00 0.00 36.00 3.93
426 442 2.007608 GAAAGGAACGTGGGTCATAGC 58.992 52.381 0.00 0.00 0.00 2.97
427 443 3.262420 CAGAAAGGAACGTGGGTCATAG 58.738 50.000 0.00 0.00 0.00 2.23
428 444 2.614481 GCAGAAAGGAACGTGGGTCATA 60.614 50.000 0.00 0.00 0.00 2.15
430 446 0.534203 GCAGAAAGGAACGTGGGTCA 60.534 55.000 0.00 0.00 0.00 4.02
431 447 0.534203 TGCAGAAAGGAACGTGGGTC 60.534 55.000 0.00 0.00 0.00 4.46
432 448 0.818040 GTGCAGAAAGGAACGTGGGT 60.818 55.000 0.00 0.00 0.00 4.51
433 449 0.535102 AGTGCAGAAAGGAACGTGGG 60.535 55.000 0.00 0.00 0.00 4.61
435 451 1.581934 TGAGTGCAGAAAGGAACGTG 58.418 50.000 0.00 0.00 0.00 4.49
449 466 1.807165 CGGACGTGAGGCATGAGTG 60.807 63.158 0.00 0.00 45.40 3.51
454 471 2.680352 AGGACGGACGTGAGGCAT 60.680 61.111 0.53 0.00 45.40 4.40
476 493 0.039256 AAAAGCCGTGCTACGTACGA 60.039 50.000 24.41 4.69 43.77 3.43
483 500 2.695359 CTTGTAGGAAAAGCCGTGCTA 58.305 47.619 0.00 0.00 43.43 3.49
525 542 1.085091 AGGTGTGCTCTCGTACTACG 58.915 55.000 1.93 1.93 44.19 3.51
611 656 1.352404 CGAACGGAGGAGACGCTAG 59.648 63.158 0.00 0.00 34.00 3.42
622 668 2.089936 GCGTGCATGTACGAACGGA 61.090 57.895 35.54 0.00 46.46 4.69
645 719 3.806380 CATGTGGGGAGATCTTTCTCTG 58.194 50.000 0.00 0.00 46.46 3.35
647 721 2.570135 GCATGTGGGGAGATCTTTCTC 58.430 52.381 0.00 0.00 46.52 2.87
696 1435 1.079266 GGTGGCACTGAGCTCTGAG 60.079 63.158 25.49 18.87 44.79 3.35
697 1436 2.935740 CGGTGGCACTGAGCTCTGA 61.936 63.158 25.49 0.11 44.79 3.27
698 1437 2.433838 CGGTGGCACTGAGCTCTG 60.434 66.667 21.95 18.15 44.79 3.35
699 1438 4.385405 GCGGTGGCACTGAGCTCT 62.385 66.667 29.90 0.00 44.79 4.09
700 1439 4.687215 TGCGGTGGCACTGAGCTC 62.687 66.667 29.90 6.82 46.21 4.09
727 1475 4.388499 TCGCGGGAACTGAAGGCC 62.388 66.667 6.13 0.00 36.31 5.19
753 1501 4.938074 TTCGGGTGGACGGGGACA 62.938 66.667 0.00 0.00 0.00 4.02
799 1578 0.805322 GATGAGCAGTGCCTCTCGTG 60.805 60.000 12.58 0.00 33.02 4.35
819 1598 1.367471 CTCTGCGGTTGGTCACTGA 59.633 57.895 0.00 0.00 32.74 3.41
820 1599 2.320587 GCTCTGCGGTTGGTCACTG 61.321 63.158 0.00 0.00 34.40 3.66
821 1600 2.031163 GCTCTGCGGTTGGTCACT 59.969 61.111 0.00 0.00 0.00 3.41
823 1602 3.240134 GAGGCTCTGCGGTTGGTCA 62.240 63.158 7.40 0.00 0.00 4.02
824 1603 2.435059 GAGGCTCTGCGGTTGGTC 60.435 66.667 7.40 0.00 0.00 4.02
825 1604 2.925170 AGAGGCTCTGCGGTTGGT 60.925 61.111 17.96 0.00 0.00 3.67
923 1715 1.798626 TGATGAGAGATGGGAGTGGG 58.201 55.000 0.00 0.00 0.00 4.61
972 1765 2.507769 CTCGTGCAGCTGATCGCA 60.508 61.111 20.43 4.84 42.61 5.10
973 1766 2.967929 ATCCTCGTGCAGCTGATCGC 62.968 60.000 20.43 6.34 39.57 4.58
976 1769 1.332889 TGGATCCTCGTGCAGCTGAT 61.333 55.000 20.43 0.00 0.00 2.90
977 1770 1.543944 TTGGATCCTCGTGCAGCTGA 61.544 55.000 20.43 0.00 0.00 4.26
978 1771 1.078918 TTGGATCCTCGTGCAGCTG 60.079 57.895 14.23 10.11 0.00 4.24
982 1775 1.913951 ATGCCTTGGATCCTCGTGCA 61.914 55.000 14.23 15.98 0.00 4.57
983 1776 1.153086 ATGCCTTGGATCCTCGTGC 60.153 57.895 14.23 10.83 0.00 5.34
984 1777 0.178767 TCATGCCTTGGATCCTCGTG 59.821 55.000 14.23 10.75 0.00 4.35
986 1779 0.250209 CCTCATGCCTTGGATCCTCG 60.250 60.000 14.23 3.53 0.00 4.63
987 1780 1.135094 TCCTCATGCCTTGGATCCTC 58.865 55.000 14.23 0.21 0.00 3.71
988 1781 1.704070 GATCCTCATGCCTTGGATCCT 59.296 52.381 14.23 0.00 46.28 3.24
991 1784 1.424302 CTGGATCCTCATGCCTTGGAT 59.576 52.381 14.23 8.42 42.65 3.41
992 1785 0.841961 CTGGATCCTCATGCCTTGGA 59.158 55.000 14.23 0.00 0.00 3.53
993 1786 0.549950 ACTGGATCCTCATGCCTTGG 59.450 55.000 14.23 0.00 0.00 3.61
994 1787 1.676746 CACTGGATCCTCATGCCTTG 58.323 55.000 14.23 0.00 0.00 3.61
1524 2409 1.211567 TTGCCTAGCCCCTTGCCTTA 61.212 55.000 0.00 0.00 42.71 2.69
1545 2430 0.103208 GATAGCAGGGAGACACGTGG 59.897 60.000 21.57 0.44 0.00 4.94
1630 2530 0.768221 ACTCCAGCTCCTTGAACCCA 60.768 55.000 0.00 0.00 0.00 4.51
1677 2577 2.494918 GCGCCTGGTCGTCATACT 59.505 61.111 0.00 0.00 0.00 2.12
1678 2578 2.585247 GGCGCCTGGTCGTCATAC 60.585 66.667 22.15 0.00 33.72 2.39
1679 2579 4.201679 CGGCGCCTGGTCGTCATA 62.202 66.667 26.68 0.00 39.39 2.15
1858 2758 7.508296 TCAGTTCAGATATCTCATCCAAGATCA 59.492 37.037 1.03 0.00 37.24 2.92
1938 2853 3.563808 GGCAGAATCCGTTTGCATACATA 59.436 43.478 8.06 0.00 39.54 2.29
1999 2914 3.763097 TCGCCTTGCAATTTCATACTG 57.237 42.857 0.00 0.00 0.00 2.74
2000 2915 4.496341 CGAATCGCCTTGCAATTTCATACT 60.496 41.667 0.00 0.00 0.00 2.12
2001 2916 3.725740 CGAATCGCCTTGCAATTTCATAC 59.274 43.478 0.00 0.00 0.00 2.39
2083 3001 8.129211 CCACAGTATATAAACCTTAAAAGCAGC 58.871 37.037 0.00 0.00 0.00 5.25
2124 3060 2.783828 ATGATCGCCTCTTGTCTACG 57.216 50.000 0.00 0.00 0.00 3.51
2128 3064 3.133691 TGCATTATGATCGCCTCTTGTC 58.866 45.455 0.00 0.00 0.00 3.18
2212 3149 2.413765 GCTGTAGTTCAAGCATGCTGTG 60.414 50.000 23.48 20.19 0.00 3.66
2213 3150 1.808945 GCTGTAGTTCAAGCATGCTGT 59.191 47.619 23.48 8.82 0.00 4.40
2214 3151 1.131883 GGCTGTAGTTCAAGCATGCTG 59.868 52.381 23.48 15.40 0.00 4.41
2215 3152 1.271543 TGGCTGTAGTTCAAGCATGCT 60.272 47.619 16.30 16.30 0.00 3.79
2216 3153 1.167851 TGGCTGTAGTTCAAGCATGC 58.832 50.000 10.51 10.51 0.00 4.06
2217 3154 3.940852 TGTATGGCTGTAGTTCAAGCATG 59.059 43.478 0.00 0.00 0.00 4.06
2218 3155 4.194640 CTGTATGGCTGTAGTTCAAGCAT 58.805 43.478 0.00 0.00 0.00 3.79
2219 3156 3.007940 ACTGTATGGCTGTAGTTCAAGCA 59.992 43.478 0.00 0.00 0.00 3.91
2220 3157 3.600388 ACTGTATGGCTGTAGTTCAAGC 58.400 45.455 0.00 0.00 0.00 4.01
2221 3158 5.807520 CAGTACTGTATGGCTGTAGTTCAAG 59.192 44.000 15.06 0.00 34.33 3.02
2222 3159 5.245301 ACAGTACTGTATGGCTGTAGTTCAA 59.755 40.000 26.91 0.00 42.90 2.69
2223 3160 4.770531 ACAGTACTGTATGGCTGTAGTTCA 59.229 41.667 26.91 0.00 42.90 3.18
2224 3161 5.326200 ACAGTACTGTATGGCTGTAGTTC 57.674 43.478 26.91 0.00 42.90 3.01
2225 3162 6.845758 TTACAGTACTGTATGGCTGTAGTT 57.154 37.500 31.05 7.66 44.54 2.24
2226 3163 6.605995 TGATTACAGTACTGTATGGCTGTAGT 59.394 38.462 31.05 10.64 44.54 2.73
2227 3164 6.918569 GTGATTACAGTACTGTATGGCTGTAG 59.081 42.308 31.05 1.93 44.54 2.74
2228 3165 6.183360 GGTGATTACAGTACTGTATGGCTGTA 60.183 42.308 31.05 17.68 44.54 2.74
2229 3166 5.395324 GGTGATTACAGTACTGTATGGCTGT 60.395 44.000 31.05 15.67 44.54 4.40
2230 3167 5.050490 GGTGATTACAGTACTGTATGGCTG 58.950 45.833 31.05 4.83 44.54 4.85
2231 3168 4.202121 CGGTGATTACAGTACTGTATGGCT 60.202 45.833 31.05 18.27 44.54 4.75
2232 3169 4.049186 CGGTGATTACAGTACTGTATGGC 58.951 47.826 31.05 23.03 44.54 4.40
2233 3170 5.041287 CACGGTGATTACAGTACTGTATGG 58.959 45.833 31.05 19.45 44.54 2.74
2234 3171 4.503007 GCACGGTGATTACAGTACTGTATG 59.497 45.833 31.05 24.55 44.54 2.39
2235 3172 4.158949 TGCACGGTGATTACAGTACTGTAT 59.841 41.667 31.05 21.82 44.54 2.29
2236 3173 3.506844 TGCACGGTGATTACAGTACTGTA 59.493 43.478 27.99 27.99 44.42 2.74
2237 3174 2.297880 TGCACGGTGATTACAGTACTGT 59.702 45.455 30.13 30.13 46.87 3.55
2238 3175 2.666508 GTGCACGGTGATTACAGTACTG 59.333 50.000 21.44 21.44 33.35 2.74
2239 3176 2.297880 TGTGCACGGTGATTACAGTACT 59.702 45.455 13.29 0.00 33.35 2.73
2240 3177 2.666508 CTGTGCACGGTGATTACAGTAC 59.333 50.000 17.96 3.96 33.35 2.73
2241 3178 2.929161 GCTGTGCACGGTGATTACAGTA 60.929 50.000 26.00 0.00 40.52 2.74
2242 3179 1.795768 CTGTGCACGGTGATTACAGT 58.204 50.000 17.96 0.00 35.55 3.55
2243 3180 0.443869 GCTGTGCACGGTGATTACAG 59.556 55.000 26.00 24.02 41.15 2.74
2244 3181 0.250081 TGCTGTGCACGGTGATTACA 60.250 50.000 26.00 11.97 31.71 2.41
2245 3182 0.443869 CTGCTGTGCACGGTGATTAC 59.556 55.000 26.00 9.44 33.79 1.89
2246 3183 1.298157 GCTGCTGTGCACGGTGATTA 61.298 55.000 26.00 7.82 33.79 1.75
2247 3184 2.620112 GCTGCTGTGCACGGTGATT 61.620 57.895 26.00 0.00 33.79 2.57
2248 3185 3.052082 GCTGCTGTGCACGGTGAT 61.052 61.111 26.00 0.00 33.79 3.06
2325 3266 2.304470 TGGTGTTAAGCAGTAGCCATCA 59.696 45.455 0.00 0.00 43.56 3.07
2428 3369 3.544834 GCGACTCATGTGATGTTGCATAC 60.545 47.826 0.94 0.00 39.96 2.39
2506 3448 6.732531 TCAAACACTGAGCTGATTCATAAG 57.267 37.500 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.