Multiple sequence alignment - TraesCS2A01G366000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G366000 chr2A 100.000 2855 0 0 1 2855 610707716 610710570 0.000000e+00 5273.0
1 TraesCS2A01G366000 chr2A 87.288 236 16 4 2627 2848 587750484 587750719 1.010000e-64 257.0
2 TraesCS2A01G366000 chr2A 88.889 153 15 1 1985 2137 587742827 587742977 1.350000e-43 187.0
3 TraesCS2A01G366000 chr2A 89.855 138 14 0 2140 2277 587744273 587744410 8.130000e-41 178.0
4 TraesCS2A01G366000 chr2A 92.105 114 8 1 2403 2516 587750188 587750300 2.940000e-35 159.0
5 TraesCS2A01G366000 chr2D 93.196 485 18 6 1987 2467 445394709 445395182 0.000000e+00 699.0
6 TraesCS2A01G366000 chr2D 85.387 349 11 9 2542 2850 445395962 445396310 2.740000e-85 326.0
7 TraesCS2A01G366000 chr2D 83.582 134 20 2 406 538 624019065 624018933 1.070000e-24 124.0
8 TraesCS2A01G366000 chr1A 79.319 822 154 13 1083 1896 535770244 535769431 1.920000e-156 562.0
9 TraesCS2A01G366000 chr1A 93.333 240 16 0 73 312 531693896 531693657 3.500000e-94 355.0
10 TraesCS2A01G366000 chr2B 78.780 820 158 13 1083 1894 109210079 109209268 1.160000e-148 536.0
11 TraesCS2A01G366000 chr2B 88.936 235 13 5 2627 2848 523760262 523760496 7.790000e-71 278.0
12 TraesCS2A01G366000 chr2B 93.694 111 5 1 1985 2095 523759614 523759722 6.330000e-37 165.0
13 TraesCS2A01G366000 chr2B 84.328 134 19 2 406 538 765786901 765786769 2.310000e-26 130.0
14 TraesCS2A01G366000 chr2B 84.112 107 8 2 2540 2637 523760141 523760247 8.420000e-16 95.3
15 TraesCS2A01G366000 chr3B 79.052 802 146 20 1083 1874 556367331 556366542 5.420000e-147 531.0
16 TraesCS2A01G366000 chr3B 79.860 571 83 19 1352 1896 50046522 50047086 3.450000e-104 388.0
17 TraesCS2A01G366000 chr3D 94.721 341 15 1 311 648 357168207 357168547 7.010000e-146 527.0
18 TraesCS2A01G366000 chr3D 85.776 232 13 10 663 879 357168721 357168947 7.960000e-56 228.0
19 TraesCS2A01G366000 chr3D 86.441 118 16 0 406 523 144778630 144778747 2.310000e-26 130.0
20 TraesCS2A01G366000 chr6B 94.395 339 19 0 4 342 216622593 216622255 3.260000e-144 521.0
21 TraesCS2A01G366000 chr6B 90.074 403 13 8 497 881 216622255 216621862 5.490000e-137 497.0
22 TraesCS2A01G366000 chr6B 93.151 73 5 0 1 73 278546677 278546605 1.080000e-19 108.0
23 TraesCS2A01G366000 chr6B 100.000 50 0 0 1897 1946 216621877 216621828 3.030000e-15 93.5
24 TraesCS2A01G366000 chr5B 94.100 339 20 0 1 339 57442621 57442959 1.520000e-142 516.0
25 TraesCS2A01G366000 chr5B 89.223 399 16 8 497 881 57442962 57443347 9.260000e-130 473.0
26 TraesCS2A01G366000 chr5B 83.777 413 59 4 1484 1892 454733111 454732703 4.460000e-103 385.0
27 TraesCS2A01G366000 chr5B 93.750 240 15 0 73 312 468888135 468888374 7.520000e-96 361.0
28 TraesCS2A01G366000 chr5B 85.593 118 17 0 406 523 468892249 468892366 1.070000e-24 124.0
29 TraesCS2A01G366000 chr5B 96.296 54 2 0 1894 1947 57443329 57443382 3.920000e-14 89.8
30 TraesCS2A01G366000 chr6A 95.819 287 12 0 360 646 584568616 584568902 5.570000e-127 464.0
31 TraesCS2A01G366000 chr6A 96.099 282 11 0 1 282 584568278 584568559 7.210000e-126 460.0
32 TraesCS2A01G366000 chr6A 84.615 234 15 8 663 881 584591699 584591926 2.230000e-51 213.0
33 TraesCS2A01G366000 chr6A 100.000 50 0 0 1898 1947 584591912 584591961 3.030000e-15 93.5
34 TraesCS2A01G366000 chr1B 93.333 240 16 0 73 312 435187114 435186875 3.500000e-94 355.0
35 TraesCS2A01G366000 chr1B 83.582 134 20 2 406 538 435184994 435184862 1.070000e-24 124.0
36 TraesCS2A01G366000 chr6D 92.975 242 17 0 73 314 3830891 3831132 1.260000e-93 353.0
37 TraesCS2A01G366000 chr6D 92.975 242 14 1 73 314 155545824 155545586 1.630000e-92 350.0
38 TraesCS2A01G366000 chr6D 85.075 134 18 2 406 538 430310473 430310341 4.960000e-28 135.0
39 TraesCS2A01G366000 chr6D 93.151 73 5 0 1 73 155546433 155546361 1.080000e-19 108.0
40 TraesCS2A01G366000 chr4A 92.917 240 17 0 73 312 630902784 630903023 1.630000e-92 350.0
41 TraesCS2A01G366000 chr7B 84.034 119 19 0 405 523 592408073 592407955 6.460000e-22 115.0
42 TraesCS2A01G366000 chr7B 77.391 115 24 2 1592 1705 732468985 732468872 1.840000e-07 67.6
43 TraesCS2A01G366000 chr7A 87.500 80 7 3 1 78 593699391 593699469 3.920000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G366000 chr2A 610707716 610710570 2854 False 5273.0 5273 100.000000 1 2855 1 chr2A.!!$F1 2854
1 TraesCS2A01G366000 chr2A 587750188 587750719 531 False 208.0 257 89.696500 2403 2848 2 chr2A.!!$F3 445
2 TraesCS2A01G366000 chr2D 445394709 445396310 1601 False 512.5 699 89.291500 1987 2850 2 chr2D.!!$F1 863
3 TraesCS2A01G366000 chr1A 535769431 535770244 813 True 562.0 562 79.319000 1083 1896 1 chr1A.!!$R2 813
4 TraesCS2A01G366000 chr2B 109209268 109210079 811 True 536.0 536 78.780000 1083 1894 1 chr2B.!!$R1 811
5 TraesCS2A01G366000 chr3B 556366542 556367331 789 True 531.0 531 79.052000 1083 1874 1 chr3B.!!$R1 791
6 TraesCS2A01G366000 chr3B 50046522 50047086 564 False 388.0 388 79.860000 1352 1896 1 chr3B.!!$F1 544
7 TraesCS2A01G366000 chr3D 357168207 357168947 740 False 377.5 527 90.248500 311 879 2 chr3D.!!$F2 568
8 TraesCS2A01G366000 chr6B 216621828 216622593 765 True 370.5 521 94.823000 4 1946 3 chr6B.!!$R2 1942
9 TraesCS2A01G366000 chr5B 57442621 57443382 761 False 359.6 516 93.206333 1 1947 3 chr5B.!!$F1 1946
10 TraesCS2A01G366000 chr5B 468888135 468892366 4231 False 242.5 361 89.671500 73 523 2 chr5B.!!$F2 450
11 TraesCS2A01G366000 chr6A 584568278 584568902 624 False 462.0 464 95.959000 1 646 2 chr6A.!!$F1 645
12 TraesCS2A01G366000 chr1B 435184862 435187114 2252 True 239.5 355 88.457500 73 538 2 chr1B.!!$R1 465
13 TraesCS2A01G366000 chr6D 155545586 155546433 847 True 229.0 350 93.063000 1 314 2 chr6D.!!$R2 313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 6780 0.108424 AAAGTAGAGCAGCAGAGCGG 60.108 55.0 0.0 0.0 40.15 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2352 8216 0.039256 AAAAGCCGTGCTACGTACGA 60.039 50.0 24.41 4.69 43.77 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.804989 GTGCAAATGAGGGTCTTCGG 59.195 55.000 0.00 0.00 0.00 4.30
40 41 2.350522 CAAATGAGGGTCTTCGGTCAG 58.649 52.381 0.00 0.00 0.00 3.51
184 722 5.707764 GGCCTTTCTAATAGCTCATAAAGGG 59.292 44.000 19.37 9.13 42.01 3.95
228 766 4.338012 ACAGATCAAGATGTTGCAATGGA 58.662 39.130 0.59 0.00 33.23 3.41
299 837 5.650266 ACCTTTCACATTATGCCGAATGTTA 59.350 36.000 9.88 1.61 45.65 2.41
349 2708 4.024893 TCAGTTGCGTTCAATTCAGTTCTC 60.025 41.667 0.00 0.00 34.29 2.87
359 2718 7.273598 CGTTCAATTCAGTTCTCTTCGATTCTA 59.726 37.037 0.00 0.00 0.00 2.10
615 6273 6.481644 AGAGCTTTTCTGTTGTTACTCTGAAG 59.518 38.462 0.00 0.00 33.93 3.02
773 6603 1.434622 CGTAAGGCGAGGCGAGAGTA 61.435 60.000 0.00 0.00 44.77 2.59
779 6609 2.429610 AGGCGAGGCGAGAGTATTTTTA 59.570 45.455 0.00 0.00 0.00 1.52
828 6664 3.836365 TGAATCATGGCGTAGGATTGA 57.164 42.857 6.46 0.00 39.70 2.57
850 6686 3.128375 CTTGGGCCGCTTGTGTTT 58.872 55.556 0.00 0.00 0.00 2.83
876 6712 1.853319 CACGAACGAAAGAGCGCTT 59.147 52.632 13.26 0.00 35.37 4.68
877 6713 0.232303 CACGAACGAAAGAGCGCTTT 59.768 50.000 15.73 15.73 46.62 3.51
878 6714 0.232303 ACGAACGAAAGAGCGCTTTG 59.768 50.000 20.64 14.02 44.10 2.77
879 6715 0.451135 CGAACGAAAGAGCGCTTTGG 60.451 55.000 20.64 20.42 44.10 3.28
880 6716 4.456806 ACGAAAGAGCGCTTTGGT 57.543 50.000 21.46 21.46 44.76 3.67
881 6717 3.599412 ACGAAAGAGCGCTTTGGTA 57.401 47.368 24.66 0.00 46.73 3.25
882 6718 1.873698 ACGAAAGAGCGCTTTGGTAA 58.126 45.000 24.66 0.00 46.73 2.85
883 6719 1.529865 ACGAAAGAGCGCTTTGGTAAC 59.470 47.619 24.66 8.35 46.73 2.50
884 6720 3.061342 ACGAAAGAGCGCTTTGGTAACA 61.061 45.455 24.66 0.00 46.73 2.41
885 6721 4.357808 ACGAAAGAGCGCTTTGGTAACAT 61.358 43.478 24.66 4.32 46.73 2.71
886 6722 6.370526 ACGAAAGAGCGCTTTGGTAACATG 62.371 45.833 24.66 6.25 46.73 3.21
895 6731 1.688811 TGGTAACATGACCCAGCCC 59.311 57.895 0.00 0.00 46.17 5.19
896 6732 1.451387 GGTAACATGACCCAGCCCG 60.451 63.158 0.00 0.00 32.88 6.13
897 6733 1.600107 GTAACATGACCCAGCCCGA 59.400 57.895 0.00 0.00 0.00 5.14
898 6734 0.180406 GTAACATGACCCAGCCCGAT 59.820 55.000 0.00 0.00 0.00 4.18
899 6735 0.468226 TAACATGACCCAGCCCGATC 59.532 55.000 0.00 0.00 0.00 3.69
900 6736 2.280389 CATGACCCAGCCCGATCG 60.280 66.667 8.51 8.51 0.00 3.69
901 6737 3.550431 ATGACCCAGCCCGATCGG 61.550 66.667 27.65 27.65 0.00 4.18
902 6738 4.770362 TGACCCAGCCCGATCGGA 62.770 66.667 35.42 9.97 37.50 4.55
903 6739 3.234730 GACCCAGCCCGATCGGAT 61.235 66.667 35.42 20.25 37.50 4.18
904 6740 1.906824 GACCCAGCCCGATCGGATA 60.907 63.158 35.42 0.00 37.50 2.59
905 6741 1.229209 ACCCAGCCCGATCGGATAT 60.229 57.895 35.42 17.21 37.50 1.63
906 6742 0.836400 ACCCAGCCCGATCGGATATT 60.836 55.000 35.42 14.19 37.50 1.28
907 6743 1.191535 CCCAGCCCGATCGGATATTA 58.808 55.000 35.42 0.00 37.50 0.98
908 6744 1.134788 CCCAGCCCGATCGGATATTAC 60.135 57.143 35.42 15.96 37.50 1.89
909 6745 1.825474 CCAGCCCGATCGGATATTACT 59.175 52.381 35.42 17.84 37.50 2.24
910 6746 2.417379 CCAGCCCGATCGGATATTACTG 60.417 54.545 35.42 26.02 37.50 2.74
911 6747 2.231478 CAGCCCGATCGGATATTACTGT 59.769 50.000 35.42 5.59 37.50 3.55
912 6748 2.897969 AGCCCGATCGGATATTACTGTT 59.102 45.455 35.42 10.93 37.50 3.16
913 6749 4.082408 CAGCCCGATCGGATATTACTGTTA 60.082 45.833 35.42 0.00 37.50 2.41
914 6750 4.525487 AGCCCGATCGGATATTACTGTTAA 59.475 41.667 35.42 0.00 37.50 2.01
915 6751 4.863131 GCCCGATCGGATATTACTGTTAAG 59.137 45.833 35.42 13.84 37.50 1.85
916 6752 5.408356 CCCGATCGGATATTACTGTTAAGG 58.592 45.833 35.42 8.60 37.50 2.69
917 6753 5.184479 CCCGATCGGATATTACTGTTAAGGA 59.816 44.000 35.42 0.00 37.50 3.36
918 6754 6.323266 CCGATCGGATATTACTGTTAAGGAG 58.677 44.000 30.62 0.00 37.50 3.69
919 6755 6.323266 CGATCGGATATTACTGTTAAGGAGG 58.677 44.000 7.38 0.00 0.00 4.30
920 6756 6.607004 ATCGGATATTACTGTTAAGGAGGG 57.393 41.667 0.00 0.00 0.00 4.30
921 6757 4.836736 TCGGATATTACTGTTAAGGAGGGG 59.163 45.833 0.00 0.00 0.00 4.79
922 6758 4.562963 CGGATATTACTGTTAAGGAGGGGC 60.563 50.000 0.00 0.00 0.00 5.80
923 6759 4.562963 GGATATTACTGTTAAGGAGGGGCG 60.563 50.000 0.00 0.00 0.00 6.13
924 6760 1.941377 TTACTGTTAAGGAGGGGCGA 58.059 50.000 0.00 0.00 0.00 5.54
925 6761 1.941377 TACTGTTAAGGAGGGGCGAA 58.059 50.000 0.00 0.00 0.00 4.70
926 6762 1.061546 ACTGTTAAGGAGGGGCGAAA 58.938 50.000 0.00 0.00 0.00 3.46
927 6763 1.422402 ACTGTTAAGGAGGGGCGAAAA 59.578 47.619 0.00 0.00 0.00 2.29
928 6764 2.084546 CTGTTAAGGAGGGGCGAAAAG 58.915 52.381 0.00 0.00 0.00 2.27
929 6765 1.422402 TGTTAAGGAGGGGCGAAAAGT 59.578 47.619 0.00 0.00 0.00 2.66
930 6766 2.638855 TGTTAAGGAGGGGCGAAAAGTA 59.361 45.455 0.00 0.00 0.00 2.24
931 6767 3.268330 GTTAAGGAGGGGCGAAAAGTAG 58.732 50.000 0.00 0.00 0.00 2.57
932 6768 1.652947 AAGGAGGGGCGAAAAGTAGA 58.347 50.000 0.00 0.00 0.00 2.59
933 6769 1.196012 AGGAGGGGCGAAAAGTAGAG 58.804 55.000 0.00 0.00 0.00 2.43
934 6770 0.462225 GGAGGGGCGAAAAGTAGAGC 60.462 60.000 0.00 0.00 0.00 4.09
935 6771 0.249398 GAGGGGCGAAAAGTAGAGCA 59.751 55.000 0.00 0.00 0.00 4.26
936 6772 0.250513 AGGGGCGAAAAGTAGAGCAG 59.749 55.000 0.00 0.00 0.00 4.24
937 6773 1.369839 GGGGCGAAAAGTAGAGCAGC 61.370 60.000 0.00 0.00 0.00 5.25
938 6774 0.673644 GGGCGAAAAGTAGAGCAGCA 60.674 55.000 0.00 0.00 0.00 4.41
939 6775 0.723981 GGCGAAAAGTAGAGCAGCAG 59.276 55.000 0.00 0.00 0.00 4.24
940 6776 1.673033 GGCGAAAAGTAGAGCAGCAGA 60.673 52.381 0.00 0.00 0.00 4.26
941 6777 1.658095 GCGAAAAGTAGAGCAGCAGAG 59.342 52.381 0.00 0.00 0.00 3.35
942 6778 1.658095 CGAAAAGTAGAGCAGCAGAGC 59.342 52.381 0.00 0.00 0.00 4.09
943 6779 1.658095 GAAAAGTAGAGCAGCAGAGCG 59.342 52.381 0.00 0.00 40.15 5.03
944 6780 0.108424 AAAGTAGAGCAGCAGAGCGG 60.108 55.000 0.00 0.00 40.15 5.52
945 6781 0.967887 AAGTAGAGCAGCAGAGCGGA 60.968 55.000 0.00 0.00 40.15 5.54
946 6782 1.065600 GTAGAGCAGCAGAGCGGAG 59.934 63.158 0.00 0.00 40.15 4.63
947 6783 1.379176 TAGAGCAGCAGAGCGGAGT 60.379 57.895 0.00 0.00 40.15 3.85
948 6784 1.661498 TAGAGCAGCAGAGCGGAGTG 61.661 60.000 0.00 0.00 40.15 3.51
949 6785 2.993840 AGCAGCAGAGCGGAGTGA 60.994 61.111 0.00 0.00 40.15 3.41
950 6786 2.813042 GCAGCAGAGCGGAGTGAC 60.813 66.667 0.00 0.00 0.00 3.67
951 6787 2.125753 CAGCAGAGCGGAGTGACC 60.126 66.667 0.00 0.00 0.00 4.02
952 6788 3.386237 AGCAGAGCGGAGTGACCC 61.386 66.667 0.00 0.00 34.64 4.46
953 6789 3.695606 GCAGAGCGGAGTGACCCA 61.696 66.667 0.00 0.00 34.64 4.51
954 6790 2.575993 CAGAGCGGAGTGACCCAG 59.424 66.667 0.00 0.00 34.64 4.45
955 6791 3.386237 AGAGCGGAGTGACCCAGC 61.386 66.667 0.00 0.00 34.64 4.85
956 6792 4.459089 GAGCGGAGTGACCCAGCC 62.459 72.222 0.00 0.00 34.64 4.85
960 6796 3.083997 GGAGTGACCCAGCCCGAT 61.084 66.667 0.00 0.00 0.00 4.18
961 6797 2.501610 GAGTGACCCAGCCCGATC 59.498 66.667 0.00 0.00 0.00 3.69
962 6798 3.083997 AGTGACCCAGCCCGATCC 61.084 66.667 0.00 0.00 0.00 3.36
963 6799 3.083997 GTGACCCAGCCCGATCCT 61.084 66.667 0.00 0.00 0.00 3.24
964 6800 2.764128 TGACCCAGCCCGATCCTC 60.764 66.667 0.00 0.00 0.00 3.71
965 6801 2.444895 GACCCAGCCCGATCCTCT 60.445 66.667 0.00 0.00 0.00 3.69
966 6802 2.765807 ACCCAGCCCGATCCTCTG 60.766 66.667 0.00 0.00 0.00 3.35
967 6803 4.247380 CCCAGCCCGATCCTCTGC 62.247 72.222 0.00 0.00 0.00 4.26
968 6804 4.247380 CCAGCCCGATCCTCTGCC 62.247 72.222 0.00 0.00 0.00 4.85
969 6805 4.598894 CAGCCCGATCCTCTGCCG 62.599 72.222 0.00 0.00 0.00 5.69
972 6808 3.854669 CCCGATCCTCTGCCGCTT 61.855 66.667 0.00 0.00 0.00 4.68
973 6809 2.279784 CCGATCCTCTGCCGCTTC 60.280 66.667 0.00 0.00 0.00 3.86
974 6810 2.279784 CGATCCTCTGCCGCTTCC 60.280 66.667 0.00 0.00 0.00 3.46
975 6811 2.279784 GATCCTCTGCCGCTTCCG 60.280 66.667 0.00 0.00 0.00 4.30
976 6812 3.077556 ATCCTCTGCCGCTTCCGT 61.078 61.111 0.00 0.00 0.00 4.69
977 6813 2.962697 GATCCTCTGCCGCTTCCGTC 62.963 65.000 0.00 0.00 0.00 4.79
1002 6838 3.136123 CCGGCTGGAGTTGGCATG 61.136 66.667 5.28 0.00 37.49 4.06
1003 6839 3.136123 CGGCTGGAGTTGGCATGG 61.136 66.667 0.00 0.00 0.00 3.66
1004 6840 2.757099 GGCTGGAGTTGGCATGGG 60.757 66.667 0.00 0.00 0.00 4.00
1005 6841 2.036256 GCTGGAGTTGGCATGGGT 59.964 61.111 0.00 0.00 0.00 4.51
1006 6842 2.345760 GCTGGAGTTGGCATGGGTG 61.346 63.158 0.00 0.00 0.00 4.61
1007 6843 1.379916 CTGGAGTTGGCATGGGTGA 59.620 57.895 0.00 0.00 0.00 4.02
1008 6844 0.679002 CTGGAGTTGGCATGGGTGAG 60.679 60.000 0.00 0.00 0.00 3.51
1009 6845 1.379044 GGAGTTGGCATGGGTGAGG 60.379 63.158 0.00 0.00 0.00 3.86
1010 6846 2.036256 AGTTGGCATGGGTGAGGC 59.964 61.111 0.00 0.00 0.00 4.70
1011 6847 3.443045 GTTGGCATGGGTGAGGCG 61.443 66.667 0.00 0.00 29.64 5.52
1020 6856 4.593864 GGTGAGGCGCTCGGGATC 62.594 72.222 7.64 0.00 32.35 3.36
1021 6857 4.593864 GTGAGGCGCTCGGGATCC 62.594 72.222 7.64 1.92 32.35 3.36
1022 6858 4.841617 TGAGGCGCTCGGGATCCT 62.842 66.667 12.58 0.00 32.35 3.24
1023 6859 3.984749 GAGGCGCTCGGGATCCTC 61.985 72.222 12.58 7.40 38.40 3.71
1026 6862 4.292178 GCGCTCGGGATCCTCCTG 62.292 72.222 12.58 0.00 44.41 3.86
1027 6863 2.835431 CGCTCGGGATCCTCCTGT 60.835 66.667 12.58 0.00 43.49 4.00
1028 6864 1.528542 CGCTCGGGATCCTCCTGTA 60.529 63.158 12.58 0.00 43.49 2.74
1029 6865 0.896019 CGCTCGGGATCCTCCTGTAT 60.896 60.000 12.58 0.00 43.49 2.29
1030 6866 1.613520 CGCTCGGGATCCTCCTGTATA 60.614 57.143 12.58 0.00 43.49 1.47
1031 6867 2.741145 GCTCGGGATCCTCCTGTATAT 58.259 52.381 12.58 0.00 43.49 0.86
1032 6868 3.684697 CGCTCGGGATCCTCCTGTATATA 60.685 52.174 12.58 0.00 43.49 0.86
1033 6869 3.633065 GCTCGGGATCCTCCTGTATATAC 59.367 52.174 12.58 5.89 43.49 1.47
1034 6870 4.629204 GCTCGGGATCCTCCTGTATATACT 60.629 50.000 12.58 0.00 43.49 2.12
1035 6871 5.397672 GCTCGGGATCCTCCTGTATATACTA 60.398 48.000 12.58 0.45 43.49 1.82
1036 6872 6.647461 TCGGGATCCTCCTGTATATACTAA 57.353 41.667 12.58 0.00 43.49 2.24
1037 6873 7.222180 TCGGGATCCTCCTGTATATACTAAT 57.778 40.000 12.58 0.00 43.49 1.73
1038 6874 7.061054 TCGGGATCCTCCTGTATATACTAATG 58.939 42.308 12.58 2.81 43.49 1.90
1039 6875 6.265649 CGGGATCCTCCTGTATATACTAATGG 59.734 46.154 12.58 10.63 38.13 3.16
1040 6876 7.133483 GGGATCCTCCTGTATATACTAATGGT 58.867 42.308 12.58 0.00 36.57 3.55
1041 6877 8.287350 GGGATCCTCCTGTATATACTAATGGTA 58.713 40.741 12.58 3.54 36.57 3.25
1042 6878 9.357161 GGATCCTCCTGTATATACTAATGGTAG 57.643 40.741 13.89 1.42 31.57 3.18
1043 6879 9.357161 GATCCTCCTGTATATACTAATGGTAGG 57.643 40.741 13.89 9.96 33.51 3.18
1044 6880 8.240881 TCCTCCTGTATATACTAATGGTAGGT 57.759 38.462 13.89 0.00 33.51 3.08
1045 6881 8.685311 TCCTCCTGTATATACTAATGGTAGGTT 58.315 37.037 13.89 0.00 33.51 3.50
1046 6882 9.322769 CCTCCTGTATATACTAATGGTAGGTTT 57.677 37.037 13.89 0.00 33.51 3.27
1068 6904 3.972950 TTGTTGTTGTGGTGGTATTCG 57.027 42.857 0.00 0.00 0.00 3.34
1069 6905 2.222886 TGTTGTTGTGGTGGTATTCGG 58.777 47.619 0.00 0.00 0.00 4.30
1070 6906 1.068816 GTTGTTGTGGTGGTATTCGGC 60.069 52.381 0.00 0.00 0.00 5.54
1071 6907 0.606944 TGTTGTGGTGGTATTCGGCC 60.607 55.000 0.00 0.00 0.00 6.13
1072 6908 0.322187 GTTGTGGTGGTATTCGGCCT 60.322 55.000 0.00 0.00 0.00 5.19
1073 6909 0.402504 TTGTGGTGGTATTCGGCCTT 59.597 50.000 0.00 0.00 0.00 4.35
1074 6910 0.322098 TGTGGTGGTATTCGGCCTTG 60.322 55.000 0.00 0.00 0.00 3.61
1075 6911 0.322187 GTGGTGGTATTCGGCCTTGT 60.322 55.000 0.00 0.00 0.00 3.16
1076 6912 0.322098 TGGTGGTATTCGGCCTTGTG 60.322 55.000 0.00 0.00 0.00 3.33
1077 6913 1.654023 GGTGGTATTCGGCCTTGTGC 61.654 60.000 0.00 0.00 40.16 4.57
1078 6914 0.676782 GTGGTATTCGGCCTTGTGCT 60.677 55.000 0.00 0.00 40.92 4.40
1080 6916 1.376609 GGTATTCGGCCTTGTGCTGG 61.377 60.000 0.00 0.00 46.96 4.85
1081 6917 0.676782 GTATTCGGCCTTGTGCTGGT 60.677 55.000 0.00 0.00 46.96 4.00
1089 6925 2.591429 TTGTGCTGGTCTGGCGTG 60.591 61.111 0.00 0.00 0.00 5.34
1104 6940 1.153568 CGTGATGCCGATGGAGTGT 60.154 57.895 0.00 0.00 0.00 3.55
1105 6941 0.740868 CGTGATGCCGATGGAGTGTT 60.741 55.000 0.00 0.00 0.00 3.32
1106 6942 0.729116 GTGATGCCGATGGAGTGTTG 59.271 55.000 0.00 0.00 0.00 3.33
1107 6943 0.392863 TGATGCCGATGGAGTGTTGG 60.393 55.000 0.00 0.00 0.00 3.77
1110 6946 2.819595 CCGATGGAGTGTTGGCCG 60.820 66.667 0.00 0.00 0.00 6.13
1146 6982 2.737376 GTTCGGTGGCTGTCGACC 60.737 66.667 14.12 0.00 34.99 4.79
1147 6983 2.915659 TTCGGTGGCTGTCGACCT 60.916 61.111 14.12 0.00 34.99 3.85
1152 6988 2.282251 TGGCTGTCGACCTCGTCT 60.282 61.111 14.12 0.00 40.80 4.18
1159 6995 0.241481 GTCGACCTCGTCTTCTGCTT 59.759 55.000 3.51 0.00 40.80 3.91
1160 6996 0.522180 TCGACCTCGTCTTCTGCTTC 59.478 55.000 0.00 0.00 40.80 3.86
1161 6997 0.794981 CGACCTCGTCTTCTGCTTCG 60.795 60.000 0.00 0.00 34.11 3.79
1162 6998 0.241481 GACCTCGTCTTCTGCTTCGT 59.759 55.000 0.00 0.00 0.00 3.85
1167 7003 0.523966 CGTCTTCTGCTTCGTCTCCT 59.476 55.000 0.00 0.00 0.00 3.69
1184 7020 1.187567 CCTTGGTGGAGGCAAAAGGG 61.188 60.000 0.00 0.00 38.35 3.95
1187 7023 1.304464 GGTGGAGGCAAAAGGGAGG 60.304 63.158 0.00 0.00 0.00 4.30
1190 7026 2.751837 GAGGCAAAAGGGAGGCGG 60.752 66.667 0.00 0.00 35.18 6.13
1209 7045 2.646143 GGATCCGACGCTAGCTCC 59.354 66.667 13.93 7.94 0.00 4.70
1210 7046 2.646143 GATCCGACGCTAGCTCCC 59.354 66.667 13.93 0.45 0.00 4.30
1211 7047 2.913060 ATCCGACGCTAGCTCCCC 60.913 66.667 13.93 0.00 0.00 4.81
1219 7055 0.603975 CGCTAGCTCCCCCAATAAGC 60.604 60.000 13.93 0.00 36.27 3.09
1223 7059 2.189521 CTCCCCCAATAAGCGCGT 59.810 61.111 8.43 0.00 0.00 6.01
1244 7080 4.742201 TGCCTCAGTTCGAGCCGC 62.742 66.667 0.00 0.00 40.78 6.53
1248 7084 1.515952 CTCAGTTCGAGCCGCTCTG 60.516 63.158 18.14 9.60 34.18 3.35
1253 7089 2.867855 TTCGAGCCGCTCTGGTGTT 61.868 57.895 18.14 0.00 41.21 3.32
1259 7095 2.125912 CGCTCTGGTGTTCTCCCG 60.126 66.667 0.00 0.00 0.00 5.14
1260 7096 2.932234 CGCTCTGGTGTTCTCCCGT 61.932 63.158 0.00 0.00 0.00 5.28
1261 7097 1.079750 GCTCTGGTGTTCTCCCGTC 60.080 63.158 0.00 0.00 0.00 4.79
1264 7100 0.679505 TCTGGTGTTCTCCCGTCTTG 59.320 55.000 0.00 0.00 0.00 3.02
1269 7105 1.048601 TGTTCTCCCGTCTTGCTTCT 58.951 50.000 0.00 0.00 0.00 2.85
1270 7106 2.029290 GTGTTCTCCCGTCTTGCTTCTA 60.029 50.000 0.00 0.00 0.00 2.10
1277 7113 0.109272 CGTCTTGCTTCTAGCCGTCA 60.109 55.000 0.00 0.00 41.51 4.35
1278 7114 1.469940 CGTCTTGCTTCTAGCCGTCAT 60.470 52.381 0.00 0.00 41.51 3.06
1290 7126 3.803082 CGTCATGGTGGCGGCAAG 61.803 66.667 15.50 4.29 42.52 4.01
1295 7131 3.944250 ATGGTGGCGGCAAGGGAAG 62.944 63.158 15.50 0.00 0.00 3.46
1296 7132 4.344865 GGTGGCGGCAAGGGAAGA 62.345 66.667 15.50 0.00 0.00 2.87
1297 7133 2.747855 GTGGCGGCAAGGGAAGAG 60.748 66.667 15.50 0.00 0.00 2.85
1299 7135 4.035102 GGCGGCAAGGGAAGAGGT 62.035 66.667 3.07 0.00 0.00 3.85
1304 7140 1.575447 GGCAAGGGAAGAGGTGGGAT 61.575 60.000 0.00 0.00 0.00 3.85
1305 7141 0.394899 GCAAGGGAAGAGGTGGGATG 60.395 60.000 0.00 0.00 0.00 3.51
1306 7142 0.257039 CAAGGGAAGAGGTGGGATGG 59.743 60.000 0.00 0.00 0.00 3.51
1308 7144 2.190578 GGAAGAGGTGGGATGGCG 59.809 66.667 0.00 0.00 0.00 5.69
1332 7168 2.716017 GGGCTCGAGTCTCTGGTGG 61.716 68.421 17.97 0.00 0.00 4.61
1333 7169 2.716017 GGCTCGAGTCTCTGGTGGG 61.716 68.421 15.13 0.00 0.00 4.61
1349 7185 0.904865 TGGGTGTTCTCGCTGGATCT 60.905 55.000 0.00 0.00 0.00 2.75
1350 7186 0.460987 GGGTGTTCTCGCTGGATCTG 60.461 60.000 0.00 0.00 0.00 2.90
1371 7207 1.424493 GCTTCCAGCGAGATTGTCCG 61.424 60.000 0.00 0.00 0.00 4.79
1373 7209 2.852495 TTCCAGCGAGATTGTCCGGC 62.852 60.000 0.00 0.00 0.00 6.13
1374 7210 2.892425 CAGCGAGATTGTCCGGCC 60.892 66.667 0.00 0.00 0.00 6.13
1376 7212 4.162690 GCGAGATTGTCCGGCCCT 62.163 66.667 0.00 0.00 0.00 5.19
1384 7220 3.474570 GTCCGGCCCTGATCTGCT 61.475 66.667 0.00 0.00 0.00 4.24
1385 7221 3.473647 TCCGGCCCTGATCTGCTG 61.474 66.667 0.00 0.00 0.00 4.41
1386 7222 4.559063 CCGGCCCTGATCTGCTGG 62.559 72.222 13.50 13.50 46.84 4.85
1387 7223 3.473647 CGGCCCTGATCTGCTGGA 61.474 66.667 0.00 0.00 37.79 3.86
1390 7226 3.238438 CCCTGATCTGCTGGAGGG 58.762 66.667 0.00 0.00 39.42 4.30
1391 7227 2.509916 CCTGATCTGCTGGAGGGC 59.490 66.667 0.00 0.00 37.79 5.19
1423 7259 2.470362 CCTGCTGCTGCTTCCATCG 61.470 63.158 17.00 0.00 40.48 3.84
1424 7260 3.109612 CTGCTGCTGCTTCCATCGC 62.110 63.158 17.00 0.00 40.48 4.58
1441 7277 4.147449 CGGTGATGGAGCGCTGGA 62.147 66.667 18.48 0.00 39.02 3.86
1446 7282 3.746949 GATGGAGCGCTGGAGGTGG 62.747 68.421 18.48 0.00 0.00 4.61
1459 7295 0.606673 GAGGTGGTCACAAGGGAAGC 60.607 60.000 3.40 0.00 0.00 3.86
1464 7300 0.329596 GGTCACAAGGGAAGCTGGAT 59.670 55.000 0.00 0.00 0.00 3.41
1465 7301 1.457346 GTCACAAGGGAAGCTGGATG 58.543 55.000 0.00 0.00 0.00 3.51
1466 7302 1.067295 TCACAAGGGAAGCTGGATGT 58.933 50.000 0.00 0.00 0.00 3.06
1467 7303 1.003580 TCACAAGGGAAGCTGGATGTC 59.996 52.381 0.00 0.00 0.00 3.06
1470 7306 1.557269 AAGGGAAGCTGGATGTCGCT 61.557 55.000 0.00 0.00 38.30 4.93
1476 7312 1.144716 GCTGGATGTCGCTGATGGA 59.855 57.895 0.00 0.00 0.00 3.41
1479 7315 0.904649 TGGATGTCGCTGATGGAGTT 59.095 50.000 0.00 0.00 0.00 3.01
1487 7323 0.108424 GCTGATGGAGTTCGTGAGCT 60.108 55.000 0.00 0.00 38.37 4.09
1491 7327 1.203523 GATGGAGTTCGTGAGCTCACT 59.796 52.381 36.78 22.99 44.34 3.41
1505 7341 1.361668 CTCACTCGGCGGTGGATTTG 61.362 60.000 22.21 5.96 37.75 2.32
1510 7346 1.376683 CGGCGGTGGATTTGGAGAA 60.377 57.895 0.00 0.00 0.00 2.87
1511 7347 0.958382 CGGCGGTGGATTTGGAGAAA 60.958 55.000 0.00 0.00 0.00 2.52
1525 7361 1.856265 GAGAAACTGTGGCGCCCTTG 61.856 60.000 26.77 15.93 0.00 3.61
1526 7362 3.558099 GAAACTGTGGCGCCCTTGC 62.558 63.158 26.77 12.20 0.00 4.01
1545 7381 4.778143 GGTCGCTGCCCGGTTGAT 62.778 66.667 0.00 0.00 37.59 2.57
1548 7384 3.508840 CGCTGCCCGGTTGATTCC 61.509 66.667 0.00 0.00 0.00 3.01
1604 7460 2.512986 TTTGCATTCCTCCCGGCCAT 62.513 55.000 2.24 0.00 0.00 4.40
1606 7462 2.203394 CATTCCTCCCGGCCATGG 60.203 66.667 7.63 7.63 0.00 3.66
1607 7463 2.368192 ATTCCTCCCGGCCATGGA 60.368 61.111 18.40 10.46 0.00 3.41
1644 7500 1.374758 CTGCTTCACGGTGGAGTCC 60.375 63.158 17.44 0.73 0.00 3.85
1670 7526 1.323271 TGGAGTCATGGAGGTCTCGC 61.323 60.000 0.00 0.00 0.00 5.03
1734 7593 2.427245 CGGGGAGCAGAATCGGACT 61.427 63.158 0.00 0.00 0.00 3.85
1753 7612 2.428890 ACTCGATCGCAATCTTCTTCCT 59.571 45.455 11.09 0.00 0.00 3.36
1761 7620 3.186409 CGCAATCTTCTTCCTTTGTTCGA 59.814 43.478 0.00 0.00 0.00 3.71
1768 7627 4.417426 TCTTCCTTTGTTCGAGGTCTTT 57.583 40.909 0.00 0.00 35.71 2.52
1799 7658 4.582701 TGCAGGGTCTTGTTTGTAATTG 57.417 40.909 0.00 0.00 0.00 2.32
1802 7661 4.558697 GCAGGGTCTTGTTTGTAATTGTCC 60.559 45.833 0.00 0.00 0.00 4.02
1805 7664 4.533222 GGTCTTGTTTGTAATTGTCCGTG 58.467 43.478 0.00 0.00 0.00 4.94
1808 7667 5.007332 GTCTTGTTTGTAATTGTCCGTGTCT 59.993 40.000 0.00 0.00 0.00 3.41
1809 7668 5.587043 TCTTGTTTGTAATTGTCCGTGTCTT 59.413 36.000 0.00 0.00 0.00 3.01
1823 7682 0.467290 TGTCTTTGGGGTCCTGTTGC 60.467 55.000 0.00 0.00 0.00 4.17
1824 7683 0.178990 GTCTTTGGGGTCCTGTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
1833 7692 3.014623 GGGTCCTGTTGCTAAATGTACC 58.985 50.000 0.00 0.00 0.00 3.34
1834 7693 3.014623 GGTCCTGTTGCTAAATGTACCC 58.985 50.000 0.00 0.00 0.00 3.69
1845 7705 5.163099 TGCTAAATGTACCCCATGCTTATCT 60.163 40.000 0.00 0.00 32.82 1.98
1850 7710 6.702449 ATGTACCCCATGCTTATCTAATGA 57.298 37.500 0.00 0.00 30.69 2.57
1853 7713 8.213489 TGTACCCCATGCTTATCTAATGAATA 57.787 34.615 0.00 0.00 0.00 1.75
1947 7807 4.174009 CGAATGTCGTTAGATCACCAACT 58.826 43.478 0.00 0.00 34.72 3.16
1948 7808 4.625742 CGAATGTCGTTAGATCACCAACTT 59.374 41.667 0.00 0.00 34.72 2.66
1949 7809 5.220228 CGAATGTCGTTAGATCACCAACTTC 60.220 44.000 0.00 0.00 34.72 3.01
1950 7810 3.921677 TGTCGTTAGATCACCAACTTCC 58.078 45.455 0.00 0.00 0.00 3.46
1951 7811 3.259902 GTCGTTAGATCACCAACTTCCC 58.740 50.000 0.00 0.00 0.00 3.97
1952 7812 3.056035 GTCGTTAGATCACCAACTTCCCT 60.056 47.826 0.00 0.00 0.00 4.20
1953 7813 3.194968 TCGTTAGATCACCAACTTCCCTC 59.805 47.826 0.00 0.00 0.00 4.30
1954 7814 3.195825 CGTTAGATCACCAACTTCCCTCT 59.804 47.826 0.00 0.00 0.00 3.69
1955 7815 4.508662 GTTAGATCACCAACTTCCCTCTG 58.491 47.826 0.00 0.00 0.00 3.35
1956 7816 1.280421 AGATCACCAACTTCCCTCTGC 59.720 52.381 0.00 0.00 0.00 4.26
1957 7817 1.003580 GATCACCAACTTCCCTCTGCA 59.996 52.381 0.00 0.00 0.00 4.41
1958 7818 0.397941 TCACCAACTTCCCTCTGCAG 59.602 55.000 7.63 7.63 0.00 4.41
1959 7819 0.109342 CACCAACTTCCCTCTGCAGT 59.891 55.000 14.67 0.00 0.00 4.40
1960 7820 1.347707 CACCAACTTCCCTCTGCAGTA 59.652 52.381 14.67 0.00 0.00 2.74
1961 7821 1.625818 ACCAACTTCCCTCTGCAGTAG 59.374 52.381 14.67 9.71 0.00 2.57
1962 7822 1.902508 CCAACTTCCCTCTGCAGTAGA 59.097 52.381 14.67 6.30 0.00 2.59
1963 7823 2.503356 CCAACTTCCCTCTGCAGTAGAT 59.497 50.000 14.67 0.00 34.21 1.98
1964 7824 3.431486 CCAACTTCCCTCTGCAGTAGATC 60.431 52.174 14.67 0.00 34.21 2.75
1965 7825 2.028130 ACTTCCCTCTGCAGTAGATCG 58.972 52.381 14.67 2.61 34.21 3.69
1966 7826 2.302260 CTTCCCTCTGCAGTAGATCGA 58.698 52.381 14.67 0.00 34.21 3.59
1967 7827 2.666272 TCCCTCTGCAGTAGATCGAT 57.334 50.000 14.67 0.00 34.21 3.59
1968 7828 2.509569 TCCCTCTGCAGTAGATCGATC 58.490 52.381 17.91 17.91 34.21 3.69
1969 7829 2.107378 TCCCTCTGCAGTAGATCGATCT 59.893 50.000 29.58 29.58 40.86 2.75
1970 7830 2.228582 CCCTCTGCAGTAGATCGATCTG 59.771 54.545 33.22 20.69 37.76 2.90
1971 7831 3.145286 CCTCTGCAGTAGATCGATCTGA 58.855 50.000 33.22 20.77 37.76 3.27
1972 7832 3.189080 CCTCTGCAGTAGATCGATCTGAG 59.811 52.174 33.22 26.98 37.76 3.35
1973 7833 3.814625 TCTGCAGTAGATCGATCTGAGT 58.185 45.455 33.22 18.51 37.76 3.41
1974 7834 3.812609 TCTGCAGTAGATCGATCTGAGTC 59.187 47.826 33.22 20.59 37.76 3.36
1975 7835 3.545703 TGCAGTAGATCGATCTGAGTCA 58.454 45.455 33.22 22.52 37.76 3.41
1976 7836 3.563390 TGCAGTAGATCGATCTGAGTCAG 59.437 47.826 33.22 14.36 37.76 3.51
1977 7837 3.812609 GCAGTAGATCGATCTGAGTCAGA 59.187 47.826 33.22 24.66 44.99 3.27
1978 7838 4.083855 GCAGTAGATCGATCTGAGTCAGAG 60.084 50.000 33.22 14.81 44.08 3.35
1979 7839 5.056480 CAGTAGATCGATCTGAGTCAGAGT 58.944 45.833 33.22 14.59 44.08 3.24
1980 7840 5.177511 CAGTAGATCGATCTGAGTCAGAGTC 59.822 48.000 33.22 20.48 44.08 3.36
1981 7841 3.130633 AGATCGATCTGAGTCAGAGTCG 58.869 50.000 29.46 29.46 44.08 4.18
1982 7842 2.388310 TCGATCTGAGTCAGAGTCGT 57.612 50.000 31.35 18.75 44.08 4.34
1983 7843 2.701107 TCGATCTGAGTCAGAGTCGTT 58.299 47.619 31.35 18.47 44.08 3.85
1984 7844 2.673862 TCGATCTGAGTCAGAGTCGTTC 59.326 50.000 31.35 22.67 44.08 3.95
1985 7845 2.223157 CGATCTGAGTCAGAGTCGTTCC 60.223 54.545 28.25 14.14 44.08 3.62
2041 7901 1.590147 CCTCAGACGCCGTTAGGTT 59.410 57.895 0.00 0.00 40.50 3.50
2106 7966 2.065993 AGAATATCGGCGTTCCATCG 57.934 50.000 6.85 0.00 0.00 3.84
2263 8123 2.811431 CTGCACCGAGTTAAATGACCAA 59.189 45.455 0.00 0.00 0.00 3.67
2268 8128 3.181437 ACCGAGTTAAATGACCAAACCCT 60.181 43.478 0.00 0.00 0.00 4.34
2269 8129 3.190535 CCGAGTTAAATGACCAAACCCTG 59.809 47.826 0.00 0.00 0.00 4.45
2281 8141 1.645402 AAACCCTGTGAGGTGGCTGT 61.645 55.000 0.00 0.00 40.05 4.40
2298 8158 2.614779 CTGTCACAGTGCACCTATGAG 58.385 52.381 14.63 4.39 0.00 2.90
2304 8165 0.326048 AGTGCACCTATGAGGAGGCT 60.326 55.000 14.63 0.00 40.65 4.58
2311 8172 2.183679 CCTATGAGGAGGCTATGACCC 58.816 57.143 0.00 0.00 37.67 4.46
2320 8184 0.252197 GGCTATGACCCACGTTCCTT 59.748 55.000 0.00 0.00 0.00 3.36
2322 8186 2.007608 GCTATGACCCACGTTCCTTTC 58.992 52.381 0.00 0.00 0.00 2.62
2325 8189 0.534203 TGACCCACGTTCCTTTCTGC 60.534 55.000 0.00 0.00 0.00 4.26
2330 8194 1.581934 CACGTTCCTTTCTGCACTCA 58.418 50.000 0.00 0.00 0.00 3.41
2352 8216 1.032657 CCTCACGTCCGTCCTCTGAT 61.033 60.000 0.00 0.00 0.00 2.90
2354 8218 1.062685 CACGTCCGTCCTCTGATCG 59.937 63.158 0.00 0.00 0.00 3.69
2359 8223 0.107993 TCCGTCCTCTGATCGTACGT 60.108 55.000 16.05 2.33 31.87 3.57
2375 8239 3.429043 CGTAGCACGGCTTTTCCTA 57.571 52.632 3.71 0.00 40.44 2.94
2389 8253 0.179111 TTCCTACAAGCCGCTCGATG 60.179 55.000 0.00 0.00 0.00 3.84
2390 8254 2.240500 CCTACAAGCCGCTCGATGC 61.241 63.158 0.00 0.00 38.57 3.91
2391 8255 2.202878 TACAAGCCGCTCGATGCC 60.203 61.111 0.00 0.00 38.78 4.40
2394 8258 4.880537 AAGCCGCTCGATGCCTCG 62.881 66.667 4.89 4.89 46.41 4.63
2521 8431 0.236187 TTCGTACATGCACGCAAACC 59.764 50.000 13.73 0.00 41.67 3.27
2523 8433 0.452618 CGTACATGCACGCAAACCAG 60.453 55.000 5.37 0.00 34.78 4.00
2572 9164 1.941812 CAACGTGACAACTGGGAGC 59.058 57.895 0.00 0.00 0.00 4.70
2573 9165 0.532862 CAACGTGACAACTGGGAGCT 60.533 55.000 0.00 0.00 0.00 4.09
2574 9166 0.249911 AACGTGACAACTGGGAGCTC 60.250 55.000 4.71 4.71 0.00 4.09
2575 9167 1.367471 CGTGACAACTGGGAGCTCA 59.633 57.895 17.19 0.00 0.00 4.26
2576 9168 0.668706 CGTGACAACTGGGAGCTCAG 60.669 60.000 17.19 8.55 40.40 3.35
2603 9204 2.566010 CCACCGCACAATTTCCCG 59.434 61.111 0.00 0.00 0.00 5.14
2675 9305 0.815095 AAATCAAATTCCCGGTCGCC 59.185 50.000 0.00 0.00 0.00 5.54
2695 9325 0.969917 ACGAGAGGCACTGCTCATCT 60.970 55.000 0.00 2.59 41.55 2.90
2696 9326 0.248990 CGAGAGGCACTGCTCATCTC 60.249 60.000 15.68 15.68 41.55 2.75
2697 9327 0.822811 GAGAGGCACTGCTCATCTCA 59.177 55.000 18.58 0.00 41.55 3.27
2699 9329 0.536260 GAGGCACTGCTCATCTCAGT 59.464 55.000 0.00 0.00 44.87 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.841880 GTTAAATAATCCCTTTTGTCTTCTGAC 57.158 33.333 0.00 0.00 43.20 3.51
105 643 2.436911 TCATACATGAGAGCAGCACCAT 59.563 45.455 0.00 0.00 32.11 3.55
184 722 7.340999 TCTGTATAAAATGTTTTAGGCCCCTTC 59.659 37.037 0.00 0.00 36.22 3.46
228 766 1.112916 CACTTCCCCAACGGCCTTTT 61.113 55.000 0.00 0.00 0.00 2.27
299 837 7.120579 TCGGCAACTTAAATGTAGATGTTTGAT 59.879 33.333 0.00 0.00 0.00 2.57
349 2708 4.048504 TGTGTGTGTGTGTAGAATCGAAG 58.951 43.478 0.00 0.00 0.00 3.79
425 6080 7.487484 TGCTTTCTTGAATGTTTGTTATGACA 58.513 30.769 0.00 0.00 0.00 3.58
615 6273 4.742438 TTGGTCTTGCTGTACGAATTTC 57.258 40.909 0.00 0.00 0.00 2.17
773 6603 3.860536 GCTCTCGTCTCGCTTCTAAAAAT 59.139 43.478 0.00 0.00 0.00 1.82
779 6609 0.675208 TGAGCTCTCGTCTCGCTTCT 60.675 55.000 16.19 0.00 33.47 2.85
876 6712 0.039035 GGGCTGGGTCATGTTACCAA 59.961 55.000 5.97 0.00 41.67 3.67
877 6713 1.688811 GGGCTGGGTCATGTTACCA 59.311 57.895 5.97 5.89 41.67 3.25
878 6714 1.451387 CGGGCTGGGTCATGTTACC 60.451 63.158 0.00 0.00 38.94 2.85
879 6715 0.180406 ATCGGGCTGGGTCATGTTAC 59.820 55.000 0.00 0.00 0.00 2.50
880 6716 0.468226 GATCGGGCTGGGTCATGTTA 59.532 55.000 0.00 0.00 0.00 2.41
881 6717 1.224592 GATCGGGCTGGGTCATGTT 59.775 57.895 0.00 0.00 0.00 2.71
882 6718 2.911143 GATCGGGCTGGGTCATGT 59.089 61.111 0.00 0.00 0.00 3.21
883 6719 2.280389 CGATCGGGCTGGGTCATG 60.280 66.667 7.38 0.00 0.00 3.07
884 6720 3.550431 CCGATCGGGCTGGGTCAT 61.550 66.667 26.95 0.00 0.00 3.06
885 6721 2.650226 TATCCGATCGGGCTGGGTCA 62.650 60.000 32.79 12.37 34.94 4.02
886 6722 1.258445 ATATCCGATCGGGCTGGGTC 61.258 60.000 32.79 0.00 34.94 4.46
887 6723 0.836400 AATATCCGATCGGGCTGGGT 60.836 55.000 32.79 14.61 34.94 4.51
888 6724 1.134788 GTAATATCCGATCGGGCTGGG 60.135 57.143 32.79 7.40 34.94 4.45
889 6725 1.825474 AGTAATATCCGATCGGGCTGG 59.175 52.381 32.79 8.19 34.94 4.85
890 6726 2.231478 ACAGTAATATCCGATCGGGCTG 59.769 50.000 32.79 27.07 34.94 4.85
891 6727 2.526432 ACAGTAATATCCGATCGGGCT 58.474 47.619 32.79 22.27 34.94 5.19
892 6728 3.314541 AACAGTAATATCCGATCGGGC 57.685 47.619 32.79 15.86 34.94 6.13
893 6729 5.184479 TCCTTAACAGTAATATCCGATCGGG 59.816 44.000 32.79 16.82 35.59 5.14
894 6730 6.263516 TCCTTAACAGTAATATCCGATCGG 57.736 41.667 28.62 28.62 0.00 4.18
895 6731 6.323266 CCTCCTTAACAGTAATATCCGATCG 58.677 44.000 8.51 8.51 0.00 3.69
896 6732 6.351117 CCCCTCCTTAACAGTAATATCCGATC 60.351 46.154 0.00 0.00 0.00 3.69
897 6733 5.484290 CCCCTCCTTAACAGTAATATCCGAT 59.516 44.000 0.00 0.00 0.00 4.18
898 6734 4.836736 CCCCTCCTTAACAGTAATATCCGA 59.163 45.833 0.00 0.00 0.00 4.55
899 6735 4.562963 GCCCCTCCTTAACAGTAATATCCG 60.563 50.000 0.00 0.00 0.00 4.18
900 6736 4.562963 CGCCCCTCCTTAACAGTAATATCC 60.563 50.000 0.00 0.00 0.00 2.59
901 6737 4.282703 TCGCCCCTCCTTAACAGTAATATC 59.717 45.833 0.00 0.00 0.00 1.63
902 6738 4.228824 TCGCCCCTCCTTAACAGTAATAT 58.771 43.478 0.00 0.00 0.00 1.28
903 6739 3.645434 TCGCCCCTCCTTAACAGTAATA 58.355 45.455 0.00 0.00 0.00 0.98
904 6740 2.474112 TCGCCCCTCCTTAACAGTAAT 58.526 47.619 0.00 0.00 0.00 1.89
905 6741 1.941377 TCGCCCCTCCTTAACAGTAA 58.059 50.000 0.00 0.00 0.00 2.24
906 6742 1.941377 TTCGCCCCTCCTTAACAGTA 58.059 50.000 0.00 0.00 0.00 2.74
907 6743 1.061546 TTTCGCCCCTCCTTAACAGT 58.938 50.000 0.00 0.00 0.00 3.55
908 6744 2.084546 CTTTTCGCCCCTCCTTAACAG 58.915 52.381 0.00 0.00 0.00 3.16
909 6745 1.422402 ACTTTTCGCCCCTCCTTAACA 59.578 47.619 0.00 0.00 0.00 2.41
910 6746 2.195741 ACTTTTCGCCCCTCCTTAAC 57.804 50.000 0.00 0.00 0.00 2.01
911 6747 3.175594 TCTACTTTTCGCCCCTCCTTAA 58.824 45.455 0.00 0.00 0.00 1.85
912 6748 2.764572 CTCTACTTTTCGCCCCTCCTTA 59.235 50.000 0.00 0.00 0.00 2.69
913 6749 1.555533 CTCTACTTTTCGCCCCTCCTT 59.444 52.381 0.00 0.00 0.00 3.36
914 6750 1.196012 CTCTACTTTTCGCCCCTCCT 58.804 55.000 0.00 0.00 0.00 3.69
915 6751 0.462225 GCTCTACTTTTCGCCCCTCC 60.462 60.000 0.00 0.00 0.00 4.30
916 6752 0.249398 TGCTCTACTTTTCGCCCCTC 59.751 55.000 0.00 0.00 0.00 4.30
917 6753 0.250513 CTGCTCTACTTTTCGCCCCT 59.749 55.000 0.00 0.00 0.00 4.79
918 6754 1.369839 GCTGCTCTACTTTTCGCCCC 61.370 60.000 0.00 0.00 0.00 5.80
919 6755 0.673644 TGCTGCTCTACTTTTCGCCC 60.674 55.000 0.00 0.00 0.00 6.13
920 6756 0.723981 CTGCTGCTCTACTTTTCGCC 59.276 55.000 0.00 0.00 0.00 5.54
921 6757 1.658095 CTCTGCTGCTCTACTTTTCGC 59.342 52.381 0.00 0.00 0.00 4.70
922 6758 1.658095 GCTCTGCTGCTCTACTTTTCG 59.342 52.381 0.00 0.00 0.00 3.46
923 6759 1.658095 CGCTCTGCTGCTCTACTTTTC 59.342 52.381 0.00 0.00 0.00 2.29
924 6760 1.674221 CCGCTCTGCTGCTCTACTTTT 60.674 52.381 0.00 0.00 0.00 2.27
925 6761 0.108424 CCGCTCTGCTGCTCTACTTT 60.108 55.000 0.00 0.00 0.00 2.66
926 6762 0.967887 TCCGCTCTGCTGCTCTACTT 60.968 55.000 0.00 0.00 0.00 2.24
927 6763 1.379176 TCCGCTCTGCTGCTCTACT 60.379 57.895 0.00 0.00 0.00 2.57
928 6764 1.065600 CTCCGCTCTGCTGCTCTAC 59.934 63.158 0.00 0.00 0.00 2.59
929 6765 1.379176 ACTCCGCTCTGCTGCTCTA 60.379 57.895 0.00 0.00 0.00 2.43
930 6766 2.679642 ACTCCGCTCTGCTGCTCT 60.680 61.111 0.00 0.00 0.00 4.09
931 6767 2.508887 CACTCCGCTCTGCTGCTC 60.509 66.667 0.00 0.00 0.00 4.26
932 6768 2.993840 TCACTCCGCTCTGCTGCT 60.994 61.111 0.00 0.00 0.00 4.24
933 6769 2.813042 GTCACTCCGCTCTGCTGC 60.813 66.667 0.00 0.00 0.00 5.25
934 6770 2.125753 GGTCACTCCGCTCTGCTG 60.126 66.667 0.00 0.00 0.00 4.41
935 6771 3.386237 GGGTCACTCCGCTCTGCT 61.386 66.667 0.00 0.00 37.00 4.24
936 6772 3.655810 CTGGGTCACTCCGCTCTGC 62.656 68.421 0.00 0.00 37.00 4.26
937 6773 2.575993 CTGGGTCACTCCGCTCTG 59.424 66.667 0.00 0.00 37.00 3.35
938 6774 3.386237 GCTGGGTCACTCCGCTCT 61.386 66.667 0.00 0.00 37.00 4.09
939 6775 4.459089 GGCTGGGTCACTCCGCTC 62.459 72.222 0.00 0.00 37.00 5.03
943 6779 3.083997 ATCGGGCTGGGTCACTCC 61.084 66.667 0.00 0.00 0.00 3.85
944 6780 2.501610 GATCGGGCTGGGTCACTC 59.498 66.667 0.00 0.00 0.00 3.51
945 6781 3.083997 GGATCGGGCTGGGTCACT 61.084 66.667 0.00 0.00 0.00 3.41
946 6782 3.083997 AGGATCGGGCTGGGTCAC 61.084 66.667 0.00 0.00 0.00 3.67
947 6783 2.764128 GAGGATCGGGCTGGGTCA 60.764 66.667 0.00 0.00 0.00 4.02
948 6784 2.444895 AGAGGATCGGGCTGGGTC 60.445 66.667 0.00 0.00 42.67 4.46
949 6785 2.765807 CAGAGGATCGGGCTGGGT 60.766 66.667 0.00 0.00 42.67 4.51
950 6786 4.247380 GCAGAGGATCGGGCTGGG 62.247 72.222 9.28 0.00 42.67 4.45
955 6791 3.798954 GAAGCGGCAGAGGATCGGG 62.799 68.421 1.45 0.00 42.67 5.14
956 6792 2.279784 GAAGCGGCAGAGGATCGG 60.280 66.667 1.45 0.00 42.67 4.18
957 6793 2.279784 GGAAGCGGCAGAGGATCG 60.280 66.667 1.45 0.00 42.67 3.69
958 6794 2.279784 CGGAAGCGGCAGAGGATC 60.280 66.667 1.45 0.00 0.00 3.36
959 6795 3.077556 ACGGAAGCGGCAGAGGAT 61.078 61.111 1.45 0.00 0.00 3.24
960 6796 3.760035 GACGGAAGCGGCAGAGGA 61.760 66.667 1.45 0.00 0.00 3.71
985 6821 3.136123 CATGCCAACTCCAGCCGG 61.136 66.667 0.00 0.00 0.00 6.13
986 6822 3.136123 CCATGCCAACTCCAGCCG 61.136 66.667 0.00 0.00 0.00 5.52
987 6823 2.757099 CCCATGCCAACTCCAGCC 60.757 66.667 0.00 0.00 0.00 4.85
988 6824 2.036256 ACCCATGCCAACTCCAGC 59.964 61.111 0.00 0.00 0.00 4.85
989 6825 0.679002 CTCACCCATGCCAACTCCAG 60.679 60.000 0.00 0.00 0.00 3.86
990 6826 1.379916 CTCACCCATGCCAACTCCA 59.620 57.895 0.00 0.00 0.00 3.86
991 6827 1.379044 CCTCACCCATGCCAACTCC 60.379 63.158 0.00 0.00 0.00 3.85
992 6828 2.048603 GCCTCACCCATGCCAACTC 61.049 63.158 0.00 0.00 0.00 3.01
993 6829 2.036256 GCCTCACCCATGCCAACT 59.964 61.111 0.00 0.00 0.00 3.16
994 6830 3.443045 CGCCTCACCCATGCCAAC 61.443 66.667 0.00 0.00 0.00 3.77
1003 6839 4.593864 GATCCCGAGCGCCTCACC 62.594 72.222 2.29 0.00 0.00 4.02
1004 6840 4.593864 GGATCCCGAGCGCCTCAC 62.594 72.222 2.29 0.00 0.00 3.51
1005 6841 4.841617 AGGATCCCGAGCGCCTCA 62.842 66.667 8.55 0.00 0.00 3.86
1006 6842 3.984749 GAGGATCCCGAGCGCCTC 61.985 72.222 8.55 0.00 40.04 4.70
1017 6853 9.357161 CCTACCATTAGTATATACAGGAGGATC 57.643 40.741 15.18 0.00 0.00 3.36
1018 6854 8.857997 ACCTACCATTAGTATATACAGGAGGAT 58.142 37.037 15.18 5.61 0.00 3.24
1019 6855 8.240881 ACCTACCATTAGTATATACAGGAGGA 57.759 38.462 15.18 0.00 0.00 3.71
1020 6856 8.896722 AACCTACCATTAGTATATACAGGAGG 57.103 38.462 15.18 13.76 0.00 4.30
1045 6881 5.103000 CGAATACCACCACAACAACAAAAA 58.897 37.500 0.00 0.00 0.00 1.94
1046 6882 4.440250 CCGAATACCACCACAACAACAAAA 60.440 41.667 0.00 0.00 0.00 2.44
1047 6883 3.066900 CCGAATACCACCACAACAACAAA 59.933 43.478 0.00 0.00 0.00 2.83
1048 6884 2.619177 CCGAATACCACCACAACAACAA 59.381 45.455 0.00 0.00 0.00 2.83
1049 6885 2.222886 CCGAATACCACCACAACAACA 58.777 47.619 0.00 0.00 0.00 3.33
1050 6886 1.068816 GCCGAATACCACCACAACAAC 60.069 52.381 0.00 0.00 0.00 3.32
1051 6887 1.240256 GCCGAATACCACCACAACAA 58.760 50.000 0.00 0.00 0.00 2.83
1052 6888 0.606944 GGCCGAATACCACCACAACA 60.607 55.000 0.00 0.00 0.00 3.33
1053 6889 0.322187 AGGCCGAATACCACCACAAC 60.322 55.000 0.00 0.00 0.00 3.32
1054 6890 0.402504 AAGGCCGAATACCACCACAA 59.597 50.000 0.00 0.00 0.00 3.33
1055 6891 0.322098 CAAGGCCGAATACCACCACA 60.322 55.000 0.00 0.00 0.00 4.17
1056 6892 0.322187 ACAAGGCCGAATACCACCAC 60.322 55.000 0.00 0.00 0.00 4.16
1057 6893 0.322098 CACAAGGCCGAATACCACCA 60.322 55.000 0.00 0.00 0.00 4.17
1058 6894 1.654023 GCACAAGGCCGAATACCACC 61.654 60.000 0.00 0.00 36.11 4.61
1059 6895 0.676782 AGCACAAGGCCGAATACCAC 60.677 55.000 0.00 0.00 46.50 4.16
1060 6896 0.676466 CAGCACAAGGCCGAATACCA 60.676 55.000 0.00 0.00 46.50 3.25
1061 6897 1.376609 CCAGCACAAGGCCGAATACC 61.377 60.000 0.00 0.00 46.50 2.73
1062 6898 0.676782 ACCAGCACAAGGCCGAATAC 60.677 55.000 0.00 0.00 46.50 1.89
1063 6899 0.392461 GACCAGCACAAGGCCGAATA 60.392 55.000 0.00 0.00 46.50 1.75
1064 6900 1.675641 GACCAGCACAAGGCCGAAT 60.676 57.895 0.00 0.00 46.50 3.34
1065 6901 2.281484 GACCAGCACAAGGCCGAA 60.281 61.111 0.00 0.00 46.50 4.30
1066 6902 3.241530 AGACCAGCACAAGGCCGA 61.242 61.111 0.00 0.00 46.50 5.54
1067 6903 3.052082 CAGACCAGCACAAGGCCG 61.052 66.667 0.00 0.00 46.50 6.13
1068 6904 2.674380 CCAGACCAGCACAAGGCC 60.674 66.667 0.00 0.00 46.50 5.19
1069 6905 3.368571 GCCAGACCAGCACAAGGC 61.369 66.667 0.00 0.00 45.30 4.35
1070 6906 3.052082 CGCCAGACCAGCACAAGG 61.052 66.667 0.00 0.00 0.00 3.61
1071 6907 2.281070 ACGCCAGACCAGCACAAG 60.281 61.111 0.00 0.00 0.00 3.16
1072 6908 2.395988 ATCACGCCAGACCAGCACAA 62.396 55.000 0.00 0.00 0.00 3.33
1073 6909 2.882677 ATCACGCCAGACCAGCACA 61.883 57.895 0.00 0.00 0.00 4.57
1074 6910 2.046892 ATCACGCCAGACCAGCAC 60.047 61.111 0.00 0.00 0.00 4.40
1075 6911 2.046988 CATCACGCCAGACCAGCA 60.047 61.111 0.00 0.00 0.00 4.41
1076 6912 3.503363 GCATCACGCCAGACCAGC 61.503 66.667 0.00 0.00 32.94 4.85
1089 6925 1.718757 GCCAACACTCCATCGGCATC 61.719 60.000 0.00 0.00 42.50 3.91
1130 6966 2.915659 AGGTCGACAGCCACCGAA 60.916 61.111 18.91 0.00 37.79 4.30
1138 6974 0.455295 GCAGAAGACGAGGTCGACAG 60.455 60.000 18.91 10.48 43.02 3.51
1139 6975 0.889638 AGCAGAAGACGAGGTCGACA 60.890 55.000 18.91 0.00 43.02 4.35
1141 6977 0.522180 GAAGCAGAAGACGAGGTCGA 59.478 55.000 6.35 0.00 43.02 4.20
1144 6980 0.241481 GACGAAGCAGAAGACGAGGT 59.759 55.000 0.00 0.00 0.00 3.85
1146 6982 1.466697 GGAGACGAAGCAGAAGACGAG 60.467 57.143 0.00 0.00 0.00 4.18
1147 6983 0.522180 GGAGACGAAGCAGAAGACGA 59.478 55.000 0.00 0.00 0.00 4.20
1152 6988 1.048601 ACCAAGGAGACGAAGCAGAA 58.951 50.000 0.00 0.00 0.00 3.02
1167 7003 0.178964 CTCCCTTTTGCCTCCACCAA 60.179 55.000 0.00 0.00 0.00 3.67
1178 7014 3.699134 GATCCGCCGCCTCCCTTTT 62.699 63.158 0.00 0.00 0.00 2.27
1197 7033 1.461091 TATTGGGGGAGCTAGCGTCG 61.461 60.000 9.55 0.00 0.00 5.12
1199 7035 0.759346 CTTATTGGGGGAGCTAGCGT 59.241 55.000 9.55 0.00 0.00 5.07
1209 7045 3.887868 GCCACGCGCTTATTGGGG 61.888 66.667 5.73 0.00 0.00 4.96
1223 7059 2.659016 CTCGAACTGAGGCAGCCA 59.341 61.111 15.80 0.00 41.29 4.75
1235 7071 2.765250 GAACACCAGAGCGGCTCGAA 62.765 60.000 23.15 0.00 39.03 3.71
1244 7080 0.969894 AAGACGGGAGAACACCAGAG 59.030 55.000 0.00 0.00 0.00 3.35
1248 7084 0.250338 AAGCAAGACGGGAGAACACC 60.250 55.000 0.00 0.00 0.00 4.16
1253 7089 0.818296 GCTAGAAGCAAGACGGGAGA 59.182 55.000 0.00 0.00 41.89 3.71
1259 7095 1.929836 CATGACGGCTAGAAGCAAGAC 59.070 52.381 0.00 0.00 44.75 3.01
1260 7096 1.134699 CCATGACGGCTAGAAGCAAGA 60.135 52.381 0.00 0.00 44.75 3.02
1261 7097 1.293924 CCATGACGGCTAGAAGCAAG 58.706 55.000 0.00 0.00 44.75 4.01
1264 7100 0.811616 CCACCATGACGGCTAGAAGC 60.812 60.000 0.00 0.00 41.46 3.86
1269 7105 4.155733 CCGCCACCATGACGGCTA 62.156 66.667 19.33 0.00 46.62 3.93
1277 7113 3.944250 CTTCCCTTGCCGCCACCAT 62.944 63.158 0.00 0.00 0.00 3.55
1278 7114 4.659172 CTTCCCTTGCCGCCACCA 62.659 66.667 0.00 0.00 0.00 4.17
1289 7125 2.003548 GCCATCCCACCTCTTCCCT 61.004 63.158 0.00 0.00 0.00 4.20
1290 7126 2.597903 GCCATCCCACCTCTTCCC 59.402 66.667 0.00 0.00 0.00 3.97
1322 7158 0.038159 CGAGAACACCCACCAGAGAC 60.038 60.000 0.00 0.00 0.00 3.36
1325 7161 1.837051 AGCGAGAACACCCACCAGA 60.837 57.895 0.00 0.00 0.00 3.86
1326 7162 1.669115 CAGCGAGAACACCCACCAG 60.669 63.158 0.00 0.00 0.00 4.00
1327 7163 2.425592 CAGCGAGAACACCCACCA 59.574 61.111 0.00 0.00 0.00 4.17
1332 7168 0.532573 TCAGATCCAGCGAGAACACC 59.467 55.000 0.00 0.00 0.00 4.16
1333 7169 1.919918 CTCAGATCCAGCGAGAACAC 58.080 55.000 0.00 0.00 0.00 3.32
1364 7200 1.528824 CAGATCAGGGCCGGACAAT 59.471 57.895 11.00 0.00 0.00 2.71
1366 7202 3.785859 GCAGATCAGGGCCGGACA 61.786 66.667 11.00 0.00 0.00 4.02
1371 7207 2.509916 CTCCAGCAGATCAGGGCC 59.490 66.667 0.00 0.00 0.00 5.80
1373 7209 3.238438 CCCTCCAGCAGATCAGGG 58.762 66.667 0.00 0.00 39.90 4.45
1374 7210 2.509916 GCCCTCCAGCAGATCAGG 59.490 66.667 0.00 0.00 0.00 3.86
1376 7212 2.041762 AGGCCCTCCAGCAGATCA 59.958 61.111 0.00 0.00 33.74 2.92
1406 7242 3.099438 CGATGGAAGCAGCAGCAG 58.901 61.111 3.17 0.00 45.49 4.24
1407 7243 3.129502 GCGATGGAAGCAGCAGCA 61.130 61.111 3.17 0.00 45.49 4.41
1408 7244 4.233635 CGCGATGGAAGCAGCAGC 62.234 66.667 0.00 0.00 42.56 5.25
1411 7247 3.869272 CACCGCGATGGAAGCAGC 61.869 66.667 8.23 0.00 42.00 5.25
1413 7249 1.815003 CATCACCGCGATGGAAGCA 60.815 57.895 8.23 0.00 46.73 3.91
1424 7260 4.147449 TCCAGCGCTCCATCACCG 62.147 66.667 7.13 0.00 0.00 4.94
1435 7271 1.669115 CTTGTGACCACCTCCAGCG 60.669 63.158 0.00 0.00 0.00 5.18
1436 7272 1.302832 CCTTGTGACCACCTCCAGC 60.303 63.158 0.00 0.00 0.00 4.85
1437 7273 1.127567 TCCCTTGTGACCACCTCCAG 61.128 60.000 0.00 0.00 0.00 3.86
1441 7277 1.062488 AGCTTCCCTTGTGACCACCT 61.062 55.000 0.00 0.00 0.00 4.00
1446 7282 1.271597 ACATCCAGCTTCCCTTGTGAC 60.272 52.381 0.00 0.00 0.00 3.67
1459 7295 0.463204 ACTCCATCAGCGACATCCAG 59.537 55.000 0.00 0.00 0.00 3.86
1464 7300 0.388520 CACGAACTCCATCAGCGACA 60.389 55.000 0.00 0.00 0.00 4.35
1465 7301 0.109272 TCACGAACTCCATCAGCGAC 60.109 55.000 0.00 0.00 0.00 5.19
1466 7302 0.171231 CTCACGAACTCCATCAGCGA 59.829 55.000 0.00 0.00 0.00 4.93
1467 7303 1.416813 GCTCACGAACTCCATCAGCG 61.417 60.000 0.00 0.00 0.00 5.18
1470 7306 1.067565 GTGAGCTCACGAACTCCATCA 60.068 52.381 29.84 0.00 37.10 3.07
1487 7323 1.375396 CAAATCCACCGCCGAGTGA 60.375 57.895 7.20 0.00 40.34 3.41
1491 7327 1.832719 TTCTCCAAATCCACCGCCGA 61.833 55.000 0.00 0.00 0.00 5.54
1505 7341 3.056328 GGGCGCCACAGTTTCTCC 61.056 66.667 30.85 1.84 0.00 3.71
1531 7367 3.508840 GGAATCAACCGGGCAGCG 61.509 66.667 6.32 0.00 0.00 5.18
1542 7378 2.435938 GGCGGCTTGTCGGAATCA 60.436 61.111 0.00 0.00 0.00 2.57
1543 7379 3.564027 CGGCGGCTTGTCGGAATC 61.564 66.667 7.61 0.00 43.47 2.52
1552 7388 2.797278 CCTGAGGATACGGCGGCTT 61.797 63.158 13.24 0.00 46.39 4.35
1554 7390 3.501458 GACCTGAGGATACGGCGGC 62.501 68.421 13.24 0.00 46.39 6.53
1604 7460 3.661648 GCCTCCCCTTTGGCTCCA 61.662 66.667 0.00 0.00 45.26 3.86
1624 7480 0.667792 GACTCCACCGTGAAGCAGTC 60.668 60.000 0.00 2.61 0.00 3.51
1625 7481 1.367840 GACTCCACCGTGAAGCAGT 59.632 57.895 0.00 0.00 0.00 4.40
1644 7500 1.605753 CTCCATGACTCCATGCCATG 58.394 55.000 0.00 0.00 46.73 3.66
1709 7565 2.543067 ATTCTGCTCCCCGCTGGAAC 62.543 60.000 0.00 0.00 44.57 3.62
1710 7566 2.257409 GATTCTGCTCCCCGCTGGAA 62.257 60.000 0.00 0.00 44.57 3.53
1715 7571 3.849951 TCCGATTCTGCTCCCCGC 61.850 66.667 0.00 0.00 39.77 6.13
1734 7593 3.526931 AAGGAAGAAGATTGCGATCGA 57.473 42.857 21.57 0.00 37.37 3.59
1739 7598 3.186409 TCGAACAAAGGAAGAAGATTGCG 59.814 43.478 0.00 0.00 0.00 4.85
1775 7634 5.806654 ATTACAAACAAGACCCTGCAAAT 57.193 34.783 0.00 0.00 0.00 2.32
1776 7635 5.105146 ACAATTACAAACAAGACCCTGCAAA 60.105 36.000 0.00 0.00 0.00 3.68
1777 7636 4.404073 ACAATTACAAACAAGACCCTGCAA 59.596 37.500 0.00 0.00 0.00 4.08
1785 7644 5.120399 AGACACGGACAATTACAAACAAGA 58.880 37.500 0.00 0.00 0.00 3.02
1788 7647 5.449314 CCAAAGACACGGACAATTACAAACA 60.449 40.000 0.00 0.00 0.00 2.83
1799 7658 1.302271 GGACCCCAAAGACACGGAC 60.302 63.158 0.00 0.00 0.00 4.79
1802 7661 0.179029 AACAGGACCCCAAAGACACG 60.179 55.000 0.00 0.00 0.00 4.49
1805 7664 0.178990 AGCAACAGGACCCCAAAGAC 60.179 55.000 0.00 0.00 0.00 3.01
1808 7667 2.757894 TTTAGCAACAGGACCCCAAA 57.242 45.000 0.00 0.00 0.00 3.28
1809 7668 2.158385 ACATTTAGCAACAGGACCCCAA 60.158 45.455 0.00 0.00 0.00 4.12
1823 7682 8.950210 CATTAGATAAGCATGGGGTACATTTAG 58.050 37.037 0.00 0.00 37.84 1.85
1824 7683 8.664992 TCATTAGATAAGCATGGGGTACATTTA 58.335 33.333 0.00 0.00 37.84 1.40
1833 7692 7.121759 CCCAGTTATTCATTAGATAAGCATGGG 59.878 40.741 0.00 0.00 34.64 4.00
1834 7693 7.667219 ACCCAGTTATTCATTAGATAAGCATGG 59.333 37.037 0.00 0.00 0.00 3.66
1845 7705 5.729229 TCCAGAAGGACCCAGTTATTCATTA 59.271 40.000 0.00 0.00 39.61 1.90
1896 7756 2.350484 GGTACAACCAAAGCGCTCTTTC 60.350 50.000 12.06 0.00 40.35 2.62
1897 7757 1.607148 GGTACAACCAAAGCGCTCTTT 59.393 47.619 12.06 0.00 42.92 2.52
1898 7758 1.235724 GGTACAACCAAAGCGCTCTT 58.764 50.000 12.06 4.51 38.42 2.85
1899 7759 0.605589 GGGTACAACCAAAGCGCTCT 60.606 55.000 12.06 0.00 41.02 4.09
1900 7760 1.583495 GGGGTACAACCAAAGCGCTC 61.583 60.000 12.06 0.00 41.02 5.03
1901 7761 1.602605 GGGGTACAACCAAAGCGCT 60.603 57.895 2.64 2.64 41.02 5.92
1902 7762 1.899534 TGGGGTACAACCAAAGCGC 60.900 57.895 0.00 0.00 41.02 5.92
1903 7763 1.520600 GGTGGGGTACAACCAAAGCG 61.521 60.000 9.79 0.00 41.02 4.68
1904 7764 0.468400 TGGTGGGGTACAACCAAAGC 60.468 55.000 9.79 0.43 41.02 3.51
1905 7765 1.616159 CTGGTGGGGTACAACCAAAG 58.384 55.000 9.79 7.49 41.02 2.77
1906 7766 0.468400 GCTGGTGGGGTACAACCAAA 60.468 55.000 9.79 2.20 41.02 3.28
1947 7807 2.437085 TCGATCTACTGCAGAGGGAA 57.563 50.000 23.35 0.87 36.48 3.97
1948 7808 2.107378 AGATCGATCTACTGCAGAGGGA 59.893 50.000 26.27 14.86 36.48 4.20
1949 7809 2.228582 CAGATCGATCTACTGCAGAGGG 59.771 54.545 26.87 7.57 36.48 4.30
1950 7810 3.145286 TCAGATCGATCTACTGCAGAGG 58.855 50.000 26.87 11.83 36.48 3.69
1951 7811 3.814842 ACTCAGATCGATCTACTGCAGAG 59.185 47.826 26.87 25.89 36.48 3.35
1952 7812 3.812609 GACTCAGATCGATCTACTGCAGA 59.187 47.826 26.87 17.20 34.85 4.26
1953 7813 3.563390 TGACTCAGATCGATCTACTGCAG 59.437 47.826 26.87 13.48 34.85 4.41
1954 7814 3.545703 TGACTCAGATCGATCTACTGCA 58.454 45.455 26.87 18.80 34.85 4.41
1955 7815 3.812609 TCTGACTCAGATCGATCTACTGC 59.187 47.826 26.87 16.68 35.39 4.40
1956 7816 5.056480 ACTCTGACTCAGATCGATCTACTG 58.944 45.833 26.87 20.11 39.92 2.74
1957 7817 5.290493 ACTCTGACTCAGATCGATCTACT 57.710 43.478 26.87 12.37 39.92 2.57
1958 7818 4.149922 CGACTCTGACTCAGATCGATCTAC 59.850 50.000 26.87 17.67 39.92 2.59
1959 7819 4.202172 ACGACTCTGACTCAGATCGATCTA 60.202 45.833 26.87 14.35 39.92 1.98
1960 7820 3.130633 CGACTCTGACTCAGATCGATCT 58.869 50.000 22.32 22.32 39.92 2.75
1961 7821 2.869801 ACGACTCTGACTCAGATCGATC 59.130 50.000 28.54 17.91 39.92 3.69
1962 7822 2.912771 ACGACTCTGACTCAGATCGAT 58.087 47.619 28.54 18.30 39.92 3.59
1963 7823 2.388310 ACGACTCTGACTCAGATCGA 57.612 50.000 28.54 0.00 39.92 3.59
1964 7824 2.223157 GGAACGACTCTGACTCAGATCG 60.223 54.545 24.31 24.31 39.92 3.69
1965 7825 2.098443 GGGAACGACTCTGACTCAGATC 59.902 54.545 9.26 8.34 39.92 2.75
1966 7826 2.096248 GGGAACGACTCTGACTCAGAT 58.904 52.381 9.26 0.59 39.92 2.90
1967 7827 1.202891 TGGGAACGACTCTGACTCAGA 60.203 52.381 8.50 8.50 38.25 3.27
1968 7828 1.248486 TGGGAACGACTCTGACTCAG 58.752 55.000 0.00 0.00 0.00 3.35
1969 7829 1.699730 TTGGGAACGACTCTGACTCA 58.300 50.000 0.00 0.00 0.00 3.41
1970 7830 2.814280 TTTGGGAACGACTCTGACTC 57.186 50.000 0.00 0.00 0.00 3.36
1971 7831 3.771577 ATTTTGGGAACGACTCTGACT 57.228 42.857 0.00 0.00 0.00 3.41
1972 7832 4.267928 CGATATTTTGGGAACGACTCTGAC 59.732 45.833 0.00 0.00 0.00 3.51
1973 7833 4.081862 ACGATATTTTGGGAACGACTCTGA 60.082 41.667 0.00 0.00 0.00 3.27
1974 7834 4.181578 ACGATATTTTGGGAACGACTCTG 58.818 43.478 0.00 0.00 0.00 3.35
1975 7835 4.430908 GACGATATTTTGGGAACGACTCT 58.569 43.478 0.00 0.00 0.00 3.24
1976 7836 3.554731 GGACGATATTTTGGGAACGACTC 59.445 47.826 0.00 0.00 0.00 3.36
1977 7837 3.528532 GGACGATATTTTGGGAACGACT 58.471 45.455 0.00 0.00 0.00 4.18
1978 7838 2.610833 GGGACGATATTTTGGGAACGAC 59.389 50.000 0.00 0.00 0.00 4.34
1979 7839 2.908916 GGGACGATATTTTGGGAACGA 58.091 47.619 0.00 0.00 0.00 3.85
2041 7901 1.279558 ACACCTGTCTCTAGCTCGAGA 59.720 52.381 18.75 13.64 37.69 4.04
2106 7966 4.481112 CGCTGTTTGCATCCGGCC 62.481 66.667 0.00 0.00 43.89 6.13
2110 7970 2.240612 GACGGTCGCTGTTTGCATCC 62.241 60.000 0.00 0.00 43.06 3.51
2263 8123 2.056906 GACAGCCACCTCACAGGGTT 62.057 60.000 0.00 0.00 40.58 4.11
2268 8128 1.337384 ACTGTGACAGCCACCTCACA 61.337 55.000 13.37 0.87 45.09 3.58
2269 8129 0.882042 CACTGTGACAGCCACCTCAC 60.882 60.000 13.37 0.00 45.09 3.51
2281 8141 1.827344 CTCCTCATAGGTGCACTGTGA 59.173 52.381 17.98 16.18 43.93 3.58
2298 8158 0.179081 GAACGTGGGTCATAGCCTCC 60.179 60.000 0.00 0.00 36.53 4.30
2304 8165 2.614481 GCAGAAAGGAACGTGGGTCATA 60.614 50.000 0.00 0.00 0.00 2.15
2311 8172 1.581934 TGAGTGCAGAAAGGAACGTG 58.418 50.000 0.00 0.00 0.00 4.49
2325 8189 1.807165 CGGACGTGAGGCATGAGTG 60.807 63.158 0.00 0.00 45.40 3.51
2330 8194 2.680352 AGGACGGACGTGAGGCAT 60.680 61.111 0.53 0.00 45.40 4.40
2352 8216 0.039256 AAAAGCCGTGCTACGTACGA 60.039 50.000 24.41 4.69 43.77 3.43
2354 8218 0.717784 GGAAAAGCCGTGCTACGTAC 59.282 55.000 0.00 0.00 40.58 3.67
2359 8223 2.695359 CTTGTAGGAAAAGCCGTGCTA 58.305 47.619 0.00 0.00 43.43 3.49
2401 8265 1.085091 AGGTGTGCTCTCGTACTACG 58.915 55.000 1.93 1.93 44.19 3.51
2487 8379 1.352404 CGAACGGAGGAGACGCTAG 59.648 63.158 0.00 0.00 34.00 3.42
2498 8391 2.089936 GCGTGCATGTACGAACGGA 61.090 57.895 35.54 0.00 46.46 4.69
2521 8431 3.806380 CATGTGGGGAGATCTTTCTCTG 58.194 50.000 0.00 0.00 46.46 3.35
2523 8433 2.570135 GCATGTGGGGAGATCTTTCTC 58.430 52.381 0.00 0.00 46.52 2.87
2572 9164 1.079266 GGTGGCACTGAGCTCTGAG 60.079 63.158 25.49 18.87 44.79 3.35
2573 9165 2.935740 CGGTGGCACTGAGCTCTGA 61.936 63.158 25.49 0.11 44.79 3.27
2574 9166 2.433838 CGGTGGCACTGAGCTCTG 60.434 66.667 21.95 18.15 44.79 3.35
2575 9167 4.385405 GCGGTGGCACTGAGCTCT 62.385 66.667 29.90 0.00 44.79 4.09
2576 9168 4.687215 TGCGGTGGCACTGAGCTC 62.687 66.667 29.90 6.82 46.21 4.09
2603 9204 4.388499 TCGCGGGAACTGAAGGCC 62.388 66.667 6.13 0.00 36.31 5.19
2629 9230 4.938074 TTCGGGTGGACGGGGACA 62.938 66.667 0.00 0.00 0.00 4.02
2675 9305 0.805322 GATGAGCAGTGCCTCTCGTG 60.805 60.000 12.58 0.00 33.02 4.35
2695 9325 1.367471 CTCTGCGGTTGGTCACTGA 59.633 57.895 0.00 0.00 32.74 3.41
2696 9326 2.320587 GCTCTGCGGTTGGTCACTG 61.321 63.158 0.00 0.00 34.40 3.66
2697 9327 2.031163 GCTCTGCGGTTGGTCACT 59.969 61.111 0.00 0.00 0.00 3.41
2699 9329 3.240134 GAGGCTCTGCGGTTGGTCA 62.240 63.158 7.40 0.00 0.00 4.02
2700 9330 2.435059 GAGGCTCTGCGGTTGGTC 60.435 66.667 7.40 0.00 0.00 4.02
2701 9331 2.925170 AGAGGCTCTGCGGTTGGT 60.925 61.111 17.96 0.00 0.00 3.67
2799 9442 1.798626 TGATGAGAGATGGGAGTGGG 58.201 55.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.