Multiple sequence alignment - TraesCS2A01G365000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G365000 chr2A 100.000 3485 0 0 1 3485 608870057 608873541 0.000000e+00 6436.0
1 TraesCS2A01G365000 chr2D 92.453 3233 136 55 298 3485 468855482 468858651 0.000000e+00 4519.0
2 TraesCS2A01G365000 chr2D 84.716 229 31 2 32 256 599890284 599890056 3.500000e-55 226.0
3 TraesCS2A01G365000 chr2B 90.940 3245 158 61 298 3485 547056389 547059554 0.000000e+00 4239.0
4 TraesCS2A01G365000 chr6A 88.412 1398 151 11 1008 2398 426967484 426966091 0.000000e+00 1674.0
5 TraesCS2A01G365000 chr6A 80.753 239 41 3 27 261 195136089 195136326 7.680000e-42 182.0
6 TraesCS2A01G365000 chr6B 88.126 1398 155 11 1008 2398 458486146 458487539 0.000000e+00 1652.0
7 TraesCS2A01G365000 chr6B 82.530 166 21 6 90 249 707028836 707028999 4.690000e-29 139.0
8 TraesCS2A01G365000 chr6D 88.054 1398 156 11 1008 2398 293801968 293803361 0.000000e+00 1646.0
9 TraesCS2A01G365000 chr1B 81.890 254 41 3 29 278 198660193 198660445 3.520000e-50 209.0
10 TraesCS2A01G365000 chr3D 79.928 279 46 6 1 271 402684480 402684756 2.740000e-46 196.0
11 TraesCS2A01G365000 chr7D 82.320 181 26 4 98 273 214965876 214966055 6.020000e-33 152.0
12 TraesCS2A01G365000 chr7A 84.416 154 17 7 25 173 227967562 227967713 1.010000e-30 145.0
13 TraesCS2A01G365000 chr7A 97.222 36 1 0 32 67 227967523 227967558 1.040000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G365000 chr2A 608870057 608873541 3484 False 6436 6436 100.000 1 3485 1 chr2A.!!$F1 3484
1 TraesCS2A01G365000 chr2D 468855482 468858651 3169 False 4519 4519 92.453 298 3485 1 chr2D.!!$F1 3187
2 TraesCS2A01G365000 chr2B 547056389 547059554 3165 False 4239 4239 90.940 298 3485 1 chr2B.!!$F1 3187
3 TraesCS2A01G365000 chr6A 426966091 426967484 1393 True 1674 1674 88.412 1008 2398 1 chr6A.!!$R1 1390
4 TraesCS2A01G365000 chr6B 458486146 458487539 1393 False 1652 1652 88.126 1008 2398 1 chr6B.!!$F1 1390
5 TraesCS2A01G365000 chr6D 293801968 293803361 1393 False 1646 1646 88.054 1008 2398 1 chr6D.!!$F1 1390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.033796 ATCATGTGGGTTGGCTCCTG 60.034 55.0 0.00 0.00 0.0 3.86 F
856 886 0.039527 ATTTCGCGTGGCCACTTTTC 60.040 50.0 32.28 17.27 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1513 0.962356 ACACGACCGGGTAGACGAAT 60.962 55.0 14.54 0.0 35.47 3.34 R
2611 2660 0.383124 GTGAACGAACACAAGAGCGC 60.383 55.0 0.00 0.0 40.11 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.818130 ATGGTTTGAACACACATGGC 57.182 45.000 0.00 0.00 0.00 4.40
20 21 1.478631 TGGTTTGAACACACATGGCA 58.521 45.000 0.00 0.00 0.00 4.92
21 22 2.037901 TGGTTTGAACACACATGGCAT 58.962 42.857 0.00 0.00 0.00 4.40
22 23 2.433604 TGGTTTGAACACACATGGCATT 59.566 40.909 0.00 0.00 0.00 3.56
23 24 3.118482 TGGTTTGAACACACATGGCATTT 60.118 39.130 0.00 0.00 0.00 2.32
24 25 3.876320 GGTTTGAACACACATGGCATTTT 59.124 39.130 0.00 0.00 0.00 1.82
25 26 4.260702 GGTTTGAACACACATGGCATTTTG 60.261 41.667 0.00 0.13 0.00 2.44
26 27 4.397481 TTGAACACACATGGCATTTTGA 57.603 36.364 11.85 0.00 0.00 2.69
27 28 4.603989 TGAACACACATGGCATTTTGAT 57.396 36.364 11.85 0.00 0.00 2.57
28 29 4.958509 TGAACACACATGGCATTTTGATT 58.041 34.783 11.85 6.41 0.00 2.57
29 30 6.094193 TGAACACACATGGCATTTTGATTA 57.906 33.333 11.85 0.00 0.00 1.75
30 31 6.157904 TGAACACACATGGCATTTTGATTAG 58.842 36.000 11.85 0.00 0.00 1.73
31 32 5.726980 ACACACATGGCATTTTGATTAGT 57.273 34.783 11.85 0.00 0.00 2.24
32 33 6.832520 ACACACATGGCATTTTGATTAGTA 57.167 33.333 11.85 0.00 0.00 1.82
33 34 6.620678 ACACACATGGCATTTTGATTAGTAC 58.379 36.000 11.85 0.00 0.00 2.73
34 35 6.208402 ACACACATGGCATTTTGATTAGTACA 59.792 34.615 11.85 0.00 0.00 2.90
35 36 7.093814 ACACACATGGCATTTTGATTAGTACAT 60.094 33.333 11.85 0.00 0.00 2.29
36 37 7.221259 CACACATGGCATTTTGATTAGTACATG 59.779 37.037 11.85 0.00 39.12 3.21
37 38 6.199531 CACATGGCATTTTGATTAGTACATGC 59.800 38.462 0.00 0.00 37.33 4.06
41 42 6.573617 GCATTTTGATTAGTACATGCCAAC 57.426 37.500 0.00 0.00 0.00 3.77
42 43 6.332630 GCATTTTGATTAGTACATGCCAACT 58.667 36.000 0.00 0.00 0.00 3.16
43 44 7.479980 GCATTTTGATTAGTACATGCCAACTA 58.520 34.615 0.00 0.00 0.00 2.24
44 45 7.973388 GCATTTTGATTAGTACATGCCAACTAA 59.027 33.333 14.64 14.64 41.18 2.24
45 46 9.853555 CATTTTGATTAGTACATGCCAACTAAA 57.146 29.630 15.70 5.78 40.53 1.85
47 48 8.630054 TTTGATTAGTACATGCCAACTAAAGT 57.370 30.769 15.70 5.14 40.53 2.66
48 49 8.630054 TTGATTAGTACATGCCAACTAAAGTT 57.370 30.769 15.70 4.61 40.53 2.66
49 50 9.727859 TTGATTAGTACATGCCAACTAAAGTTA 57.272 29.630 15.70 4.95 40.53 2.24
50 51 9.727859 TGATTAGTACATGCCAACTAAAGTTAA 57.272 29.630 15.70 0.51 40.53 2.01
53 54 9.727859 TTAGTACATGCCAACTAAAGTTAATCA 57.272 29.630 11.46 0.00 35.73 2.57
54 55 8.040716 AGTACATGCCAACTAAAGTTAATCAC 57.959 34.615 0.00 0.00 36.32 3.06
55 56 6.892658 ACATGCCAACTAAAGTTAATCACA 57.107 33.333 0.00 0.00 36.32 3.58
56 57 6.677913 ACATGCCAACTAAAGTTAATCACAC 58.322 36.000 0.00 0.00 36.32 3.82
57 58 6.264292 ACATGCCAACTAAAGTTAATCACACA 59.736 34.615 0.00 0.00 36.32 3.72
58 59 6.892658 TGCCAACTAAAGTTAATCACACAT 57.107 33.333 0.00 0.00 36.32 3.21
59 60 6.676950 TGCCAACTAAAGTTAATCACACATG 58.323 36.000 0.00 0.00 36.32 3.21
60 61 6.092748 GCCAACTAAAGTTAATCACACATGG 58.907 40.000 0.00 0.00 36.32 3.66
61 62 6.092748 CCAACTAAAGTTAATCACACATGGC 58.907 40.000 0.00 0.00 36.32 4.40
62 63 6.294453 CCAACTAAAGTTAATCACACATGGCA 60.294 38.462 0.00 0.00 36.32 4.92
63 64 6.892658 ACTAAAGTTAATCACACATGGCAA 57.107 33.333 0.00 0.00 0.00 4.52
64 65 6.677913 ACTAAAGTTAATCACACATGGCAAC 58.322 36.000 0.00 0.00 0.00 4.17
65 66 5.789643 AAAGTTAATCACACATGGCAACT 57.210 34.783 0.00 0.00 37.61 3.16
66 67 6.892658 AAAGTTAATCACACATGGCAACTA 57.107 33.333 0.00 0.00 37.61 2.24
67 68 6.892658 AAGTTAATCACACATGGCAACTAA 57.107 33.333 0.00 0.00 37.61 2.24
68 69 6.892658 AGTTAATCACACATGGCAACTAAA 57.107 33.333 0.00 0.00 37.61 1.85
69 70 7.283625 AGTTAATCACACATGGCAACTAAAA 57.716 32.000 0.00 0.00 37.61 1.52
70 71 7.895759 AGTTAATCACACATGGCAACTAAAAT 58.104 30.769 0.00 0.00 37.61 1.82
71 72 8.367156 AGTTAATCACACATGGCAACTAAAATT 58.633 29.630 0.00 0.00 37.61 1.82
72 73 9.632807 GTTAATCACACATGGCAACTAAAATTA 57.367 29.630 0.00 0.00 37.61 1.40
75 76 9.723601 AATCACACATGGCAACTAAAATTAATT 57.276 25.926 0.00 0.00 37.61 1.40
77 78 9.632807 TCACACATGGCAACTAAAATTAATTAC 57.367 29.630 0.01 0.00 37.61 1.89
78 79 9.416794 CACACATGGCAACTAAAATTAATTACA 57.583 29.630 0.01 0.00 37.61 2.41
79 80 9.418045 ACACATGGCAACTAAAATTAATTACAC 57.582 29.630 0.01 0.00 37.61 2.90
80 81 9.416794 CACATGGCAACTAAAATTAATTACACA 57.583 29.630 0.01 0.00 37.61 3.72
81 82 9.418045 ACATGGCAACTAAAATTAATTACACAC 57.582 29.630 0.01 0.00 37.61 3.82
82 83 8.582930 CATGGCAACTAAAATTAATTACACACG 58.417 33.333 0.01 0.00 37.61 4.49
83 84 6.583050 TGGCAACTAAAATTAATTACACACGC 59.417 34.615 0.01 1.61 37.61 5.34
84 85 6.583050 GGCAACTAAAATTAATTACACACGCA 59.417 34.615 0.01 0.00 0.00 5.24
85 86 7.274686 GGCAACTAAAATTAATTACACACGCAT 59.725 33.333 0.01 0.00 0.00 4.73
86 87 8.643752 GCAACTAAAATTAATTACACACGCATT 58.356 29.630 0.01 0.00 0.00 3.56
88 89 8.595781 ACTAAAATTAATTACACACGCATTCG 57.404 30.769 0.01 0.00 42.43 3.34
89 90 5.925189 AAATTAATTACACACGCATTCGC 57.075 34.783 0.01 0.00 39.84 4.70
99 100 3.248029 GCATTCGCGCTCATAGGG 58.752 61.111 5.56 0.00 0.00 3.53
100 101 1.595382 GCATTCGCGCTCATAGGGT 60.595 57.895 5.56 0.00 0.00 4.34
101 102 1.835483 GCATTCGCGCTCATAGGGTG 61.835 60.000 5.56 0.00 39.65 4.61
102 103 1.069765 ATTCGCGCTCATAGGGTGG 59.930 57.895 5.56 0.00 38.91 4.61
103 104 2.383245 ATTCGCGCTCATAGGGTGGG 62.383 60.000 5.56 0.00 38.91 4.61
104 105 4.609018 CGCGCTCATAGGGTGGGG 62.609 72.222 5.56 0.00 35.36 4.96
105 106 4.256180 GCGCTCATAGGGTGGGGG 62.256 72.222 0.00 0.00 43.78 5.40
106 107 2.768344 CGCTCATAGGGTGGGGGT 60.768 66.667 0.00 0.00 36.54 4.95
107 108 2.919043 GCTCATAGGGTGGGGGTG 59.081 66.667 0.00 0.00 0.00 4.61
108 109 1.692749 GCTCATAGGGTGGGGGTGA 60.693 63.158 0.00 0.00 0.00 4.02
109 110 1.700042 GCTCATAGGGTGGGGGTGAG 61.700 65.000 0.00 0.00 39.35 3.51
110 111 1.692749 TCATAGGGTGGGGGTGAGC 60.693 63.158 0.00 0.00 0.00 4.26
111 112 2.000701 CATAGGGTGGGGGTGAGCA 61.001 63.158 0.00 0.00 0.00 4.26
112 113 1.694169 ATAGGGTGGGGGTGAGCAG 60.694 63.158 0.00 0.00 0.00 4.24
113 114 2.492599 ATAGGGTGGGGGTGAGCAGT 62.493 60.000 0.00 0.00 0.00 4.40
114 115 2.706341 TAGGGTGGGGGTGAGCAGTT 62.706 60.000 0.00 0.00 0.00 3.16
115 116 2.282462 GGTGGGGGTGAGCAGTTG 60.282 66.667 0.00 0.00 0.00 3.16
116 117 2.985847 GTGGGGGTGAGCAGTTGC 60.986 66.667 0.00 0.00 42.49 4.17
117 118 4.284550 TGGGGGTGAGCAGTTGCC 62.285 66.667 0.00 0.00 43.38 4.52
118 119 4.284550 GGGGGTGAGCAGTTGCCA 62.285 66.667 0.00 0.00 43.38 4.92
119 120 2.985847 GGGGTGAGCAGTTGCCAC 60.986 66.667 13.74 13.74 43.38 5.01
120 121 2.203337 GGGTGAGCAGTTGCCACA 60.203 61.111 19.83 10.99 41.08 4.17
121 122 2.263741 GGGTGAGCAGTTGCCACAG 61.264 63.158 19.83 0.00 41.08 3.66
122 123 1.227943 GGTGAGCAGTTGCCACAGA 60.228 57.895 19.83 0.00 41.08 3.41
123 124 1.233285 GGTGAGCAGTTGCCACAGAG 61.233 60.000 19.83 0.00 41.08 3.35
124 125 1.071987 TGAGCAGTTGCCACAGAGG 59.928 57.895 0.00 0.00 43.38 3.69
125 126 1.673665 GAGCAGTTGCCACAGAGGG 60.674 63.158 0.00 0.00 43.38 4.30
126 127 2.113986 GCAGTTGCCACAGAGGGT 59.886 61.111 0.00 0.00 38.09 4.34
127 128 1.529244 GCAGTTGCCACAGAGGGTT 60.529 57.895 0.00 0.00 38.09 4.11
128 129 1.799258 GCAGTTGCCACAGAGGGTTG 61.799 60.000 0.00 0.00 38.09 3.77
129 130 0.466189 CAGTTGCCACAGAGGGTTGT 60.466 55.000 0.00 0.00 38.09 3.32
130 131 1.136828 AGTTGCCACAGAGGGTTGTA 58.863 50.000 0.00 0.00 38.09 2.41
131 132 1.705186 AGTTGCCACAGAGGGTTGTAT 59.295 47.619 0.00 0.00 38.09 2.29
132 133 1.812571 GTTGCCACAGAGGGTTGTATG 59.187 52.381 0.00 0.00 38.09 2.39
133 134 0.327924 TGCCACAGAGGGTTGTATGG 59.672 55.000 0.00 0.00 38.09 2.74
134 135 0.394352 GCCACAGAGGGTTGTATGGG 60.394 60.000 0.00 0.00 38.09 4.00
135 136 1.285280 CCACAGAGGGTTGTATGGGA 58.715 55.000 0.00 0.00 0.00 4.37
136 137 1.065418 CCACAGAGGGTTGTATGGGAC 60.065 57.143 0.00 0.00 0.00 4.46
137 138 0.902531 ACAGAGGGTTGTATGGGACG 59.097 55.000 0.00 0.00 0.00 4.79
138 139 0.902531 CAGAGGGTTGTATGGGACGT 59.097 55.000 0.00 0.00 0.00 4.34
139 140 1.278127 CAGAGGGTTGTATGGGACGTT 59.722 52.381 0.00 0.00 0.00 3.99
140 141 1.982958 AGAGGGTTGTATGGGACGTTT 59.017 47.619 0.00 0.00 0.00 3.60
141 142 2.374170 AGAGGGTTGTATGGGACGTTTT 59.626 45.455 0.00 0.00 0.00 2.43
142 143 2.486592 GAGGGTTGTATGGGACGTTTTG 59.513 50.000 0.00 0.00 0.00 2.44
143 144 1.068125 GGGTTGTATGGGACGTTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
145 146 0.238817 TTGTATGGGACGTTTTGCGC 59.761 50.000 0.00 0.00 46.11 6.09
146 147 1.135939 GTATGGGACGTTTTGCGCC 59.864 57.895 4.18 0.00 46.11 6.53
150 151 3.652000 GGACGTTTTGCGCCCGAA 61.652 61.111 4.18 0.00 46.11 4.30
151 152 2.426261 GACGTTTTGCGCCCGAAC 60.426 61.111 4.18 6.25 46.11 3.95
152 153 3.170810 GACGTTTTGCGCCCGAACA 62.171 57.895 4.18 0.00 46.11 3.18
153 154 2.254051 CGTTTTGCGCCCGAACAT 59.746 55.556 4.18 0.00 0.00 2.71
154 155 2.080062 CGTTTTGCGCCCGAACATG 61.080 57.895 4.18 0.00 0.00 3.21
155 156 1.007849 GTTTTGCGCCCGAACATGT 60.008 52.632 4.18 0.00 0.00 3.21
156 157 1.007964 TTTTGCGCCCGAACATGTG 60.008 52.632 4.18 0.00 0.00 3.21
157 158 2.413437 TTTTGCGCCCGAACATGTGG 62.413 55.000 4.18 0.00 0.00 4.17
162 163 2.034066 CCCGAACATGTGGGCAGT 59.966 61.111 8.26 0.00 38.90 4.40
163 164 1.603455 CCCGAACATGTGGGCAGTT 60.603 57.895 8.26 0.00 38.90 3.16
164 165 1.178534 CCCGAACATGTGGGCAGTTT 61.179 55.000 8.26 0.00 38.90 2.66
165 166 0.673437 CCGAACATGTGGGCAGTTTT 59.327 50.000 0.00 0.00 0.00 2.43
166 167 1.883275 CCGAACATGTGGGCAGTTTTA 59.117 47.619 0.00 0.00 0.00 1.52
167 168 2.294791 CCGAACATGTGGGCAGTTTTAA 59.705 45.455 0.00 0.00 0.00 1.52
168 169 3.056891 CCGAACATGTGGGCAGTTTTAAT 60.057 43.478 0.00 0.00 0.00 1.40
169 170 4.156922 CCGAACATGTGGGCAGTTTTAATA 59.843 41.667 0.00 0.00 0.00 0.98
170 171 5.163561 CCGAACATGTGGGCAGTTTTAATAT 60.164 40.000 0.00 0.00 0.00 1.28
171 172 6.329496 CGAACATGTGGGCAGTTTTAATATT 58.671 36.000 0.00 0.00 0.00 1.28
172 173 6.472163 CGAACATGTGGGCAGTTTTAATATTC 59.528 38.462 0.00 0.00 0.00 1.75
173 174 5.890334 ACATGTGGGCAGTTTTAATATTCG 58.110 37.500 0.00 0.00 0.00 3.34
174 175 5.650266 ACATGTGGGCAGTTTTAATATTCGA 59.350 36.000 0.00 0.00 0.00 3.71
175 176 6.321181 ACATGTGGGCAGTTTTAATATTCGAT 59.679 34.615 0.00 0.00 0.00 3.59
176 177 6.371809 TGTGGGCAGTTTTAATATTCGATC 57.628 37.500 0.00 0.00 0.00 3.69
177 178 5.883115 TGTGGGCAGTTTTAATATTCGATCA 59.117 36.000 0.00 0.00 0.00 2.92
178 179 6.183360 TGTGGGCAGTTTTAATATTCGATCAC 60.183 38.462 0.00 0.00 0.00 3.06
179 180 5.883115 TGGGCAGTTTTAATATTCGATCACA 59.117 36.000 0.00 0.00 0.00 3.58
180 181 6.375736 TGGGCAGTTTTAATATTCGATCACAA 59.624 34.615 0.00 0.00 0.00 3.33
181 182 7.094162 TGGGCAGTTTTAATATTCGATCACAAA 60.094 33.333 0.00 0.00 0.00 2.83
182 183 7.757624 GGGCAGTTTTAATATTCGATCACAAAA 59.242 33.333 0.00 0.00 0.00 2.44
183 184 8.798153 GGCAGTTTTAATATTCGATCACAAAAG 58.202 33.333 0.00 0.00 0.00 2.27
184 185 9.554724 GCAGTTTTAATATTCGATCACAAAAGA 57.445 29.630 0.00 0.00 0.00 2.52
192 193 5.550232 TTCGATCACAAAAGATCATGTGG 57.450 39.130 19.71 9.24 45.41 4.17
193 194 3.940852 TCGATCACAAAAGATCATGTGGG 59.059 43.478 19.71 5.40 45.41 4.61
194 195 3.691118 CGATCACAAAAGATCATGTGGGT 59.309 43.478 19.71 12.41 45.41 4.51
195 196 4.156556 CGATCACAAAAGATCATGTGGGTT 59.843 41.667 19.71 0.87 45.41 4.11
196 197 4.852134 TCACAAAAGATCATGTGGGTTG 57.148 40.909 19.71 3.04 45.41 3.77
197 198 3.573538 TCACAAAAGATCATGTGGGTTGG 59.426 43.478 19.71 1.57 45.41 3.77
198 199 2.299867 ACAAAAGATCATGTGGGTTGGC 59.700 45.455 0.00 0.00 0.00 4.52
199 200 2.564062 CAAAAGATCATGTGGGTTGGCT 59.436 45.455 0.00 0.00 0.00 4.75
200 201 2.134789 AAGATCATGTGGGTTGGCTC 57.865 50.000 0.00 0.00 0.00 4.70
201 202 0.257039 AGATCATGTGGGTTGGCTCC 59.743 55.000 0.00 0.00 0.00 4.70
202 203 0.257039 GATCATGTGGGTTGGCTCCT 59.743 55.000 0.00 0.00 0.00 3.69
203 204 0.033796 ATCATGTGGGTTGGCTCCTG 60.034 55.000 0.00 0.00 0.00 3.86
204 205 1.679977 CATGTGGGTTGGCTCCTGG 60.680 63.158 0.00 0.00 0.00 4.45
205 206 2.922704 ATGTGGGTTGGCTCCTGGG 61.923 63.158 0.00 0.00 0.00 4.45
206 207 3.580319 GTGGGTTGGCTCCTGGGT 61.580 66.667 0.00 0.00 0.00 4.51
207 208 2.208640 TGGGTTGGCTCCTGGGTA 59.791 61.111 0.00 0.00 0.00 3.69
208 209 2.228480 TGGGTTGGCTCCTGGGTAC 61.228 63.158 0.00 0.00 0.00 3.34
209 210 2.267961 GGTTGGCTCCTGGGTACG 59.732 66.667 0.00 0.00 0.00 3.67
210 211 2.288025 GGTTGGCTCCTGGGTACGA 61.288 63.158 0.00 0.00 0.00 3.43
211 212 1.079336 GTTGGCTCCTGGGTACGAC 60.079 63.158 0.00 0.00 0.00 4.34
212 213 2.288025 TTGGCTCCTGGGTACGACC 61.288 63.158 0.00 0.00 37.60 4.79
213 214 3.834799 GGCTCCTGGGTACGACCG 61.835 72.222 0.00 0.00 39.83 4.79
214 215 3.834799 GCTCCTGGGTACGACCGG 61.835 72.222 0.00 0.00 39.83 5.28
215 216 2.044650 CTCCTGGGTACGACCGGA 60.045 66.667 9.46 0.00 39.83 5.14
216 217 2.361610 TCCTGGGTACGACCGGAC 60.362 66.667 9.46 0.00 39.83 4.79
217 218 3.818787 CCTGGGTACGACCGGACG 61.819 72.222 24.38 24.38 39.83 4.79
218 219 2.747460 CTGGGTACGACCGGACGA 60.747 66.667 31.92 13.26 39.83 4.20
219 220 2.747460 TGGGTACGACCGGACGAG 60.747 66.667 31.92 10.73 39.83 4.18
220 221 2.747855 GGGTACGACCGGACGAGT 60.748 66.667 31.92 13.75 39.83 4.18
221 222 2.754995 GGGTACGACCGGACGAGTC 61.755 68.421 31.92 19.20 39.83 3.36
226 227 4.991760 GACCGGACGAGTCGTATG 57.008 61.111 19.93 13.63 41.37 2.39
227 228 1.354506 GACCGGACGAGTCGTATGG 59.645 63.158 25.91 25.91 41.37 2.74
228 229 1.372087 GACCGGACGAGTCGTATGGT 61.372 60.000 30.66 30.66 45.50 3.55
229 230 1.354506 CCGGACGAGTCGTATGGTC 59.645 63.158 19.93 5.39 41.37 4.02
230 231 1.011463 CGGACGAGTCGTATGGTCG 60.011 63.158 19.93 13.24 41.37 4.79
231 232 1.354506 GGACGAGTCGTATGGTCGG 59.645 63.158 19.93 0.00 41.37 4.79
232 233 1.091771 GGACGAGTCGTATGGTCGGA 61.092 60.000 19.93 0.00 41.37 4.55
233 234 0.942962 GACGAGTCGTATGGTCGGAT 59.057 55.000 19.93 0.00 41.37 4.18
234 235 0.661552 ACGAGTCGTATGGTCGGATG 59.338 55.000 18.34 0.00 38.73 3.51
235 236 0.661552 CGAGTCGTATGGTCGGATGT 59.338 55.000 3.82 0.00 0.00 3.06
236 237 1.333881 CGAGTCGTATGGTCGGATGTC 60.334 57.143 3.82 0.00 0.00 3.06
237 238 1.001597 GAGTCGTATGGTCGGATGTCC 60.002 57.143 0.00 0.00 0.00 4.02
238 239 0.742505 GTCGTATGGTCGGATGTCCA 59.257 55.000 0.00 0.00 37.70 4.02
239 240 1.340248 GTCGTATGGTCGGATGTCCAT 59.660 52.381 4.31 4.31 44.62 3.41
240 241 2.036387 TCGTATGGTCGGATGTCCATT 58.964 47.619 4.20 0.00 40.51 3.16
241 242 2.135139 CGTATGGTCGGATGTCCATTG 58.865 52.381 4.20 0.00 40.51 2.82
242 243 1.873591 GTATGGTCGGATGTCCATTGC 59.126 52.381 4.20 0.00 40.51 3.56
243 244 0.815213 ATGGTCGGATGTCCATTGCG 60.815 55.000 0.00 0.00 40.51 4.85
244 245 2.709475 GTCGGATGTCCATTGCGC 59.291 61.111 0.00 0.00 35.14 6.09
245 246 2.513666 TCGGATGTCCATTGCGCC 60.514 61.111 4.18 0.00 35.14 6.53
246 247 2.823593 CGGATGTCCATTGCGCCA 60.824 61.111 4.18 0.00 35.14 5.69
247 248 2.800736 GGATGTCCATTGCGCCAC 59.199 61.111 4.18 0.00 35.64 5.01
248 249 2.045708 GGATGTCCATTGCGCCACA 61.046 57.895 4.18 0.00 35.64 4.17
249 250 1.386525 GGATGTCCATTGCGCCACAT 61.387 55.000 4.18 5.31 35.64 3.21
250 251 1.308047 GATGTCCATTGCGCCACATA 58.692 50.000 4.18 0.00 29.43 2.29
251 252 1.881973 GATGTCCATTGCGCCACATAT 59.118 47.619 4.18 0.00 29.43 1.78
252 253 1.023502 TGTCCATTGCGCCACATATG 58.976 50.000 4.18 0.00 0.00 1.78
253 254 1.024271 GTCCATTGCGCCACATATGT 58.976 50.000 4.18 1.41 0.00 2.29
254 255 1.023502 TCCATTGCGCCACATATGTG 58.976 50.000 26.02 26.02 45.23 3.21
269 270 7.356641 CACATATGTGGCAGTTATAGACATC 57.643 40.000 25.41 0.00 42.10 3.06
270 271 6.369890 CACATATGTGGCAGTTATAGACATCC 59.630 42.308 25.41 0.00 42.10 3.51
271 272 6.270927 ACATATGTGGCAGTTATAGACATCCT 59.729 38.462 7.78 0.00 0.00 3.24
272 273 7.454694 ACATATGTGGCAGTTATAGACATCCTA 59.545 37.037 7.78 0.00 0.00 2.94
273 274 5.531122 TGTGGCAGTTATAGACATCCTAC 57.469 43.478 0.00 0.00 0.00 3.18
274 275 4.959839 TGTGGCAGTTATAGACATCCTACA 59.040 41.667 0.00 0.00 0.00 2.74
275 276 5.602561 TGTGGCAGTTATAGACATCCTACAT 59.397 40.000 0.00 0.00 0.00 2.29
276 277 6.099701 TGTGGCAGTTATAGACATCCTACATT 59.900 38.462 0.00 0.00 0.00 2.71
277 278 6.992715 GTGGCAGTTATAGACATCCTACATTT 59.007 38.462 0.00 0.00 0.00 2.32
278 279 8.148351 GTGGCAGTTATAGACATCCTACATTTA 58.852 37.037 0.00 0.00 0.00 1.40
279 280 8.710239 TGGCAGTTATAGACATCCTACATTTAA 58.290 33.333 0.00 0.00 0.00 1.52
280 281 9.209175 GGCAGTTATAGACATCCTACATTTAAG 57.791 37.037 0.00 0.00 0.00 1.85
281 282 9.209175 GCAGTTATAGACATCCTACATTTAAGG 57.791 37.037 0.00 0.00 35.26 2.69
282 283 9.209175 CAGTTATAGACATCCTACATTTAAGGC 57.791 37.037 0.00 0.00 33.84 4.35
283 284 8.934697 AGTTATAGACATCCTACATTTAAGGCA 58.065 33.333 0.00 0.00 33.84 4.75
284 285 9.209175 GTTATAGACATCCTACATTTAAGGCAG 57.791 37.037 0.00 0.00 33.84 4.85
285 286 5.041191 AGACATCCTACATTTAAGGCAGG 57.959 43.478 0.00 0.00 33.84 4.85
286 287 4.475016 AGACATCCTACATTTAAGGCAGGT 59.525 41.667 0.00 0.00 33.84 4.00
287 288 5.044846 AGACATCCTACATTTAAGGCAGGTT 60.045 40.000 0.00 0.00 33.84 3.50
288 289 6.157994 AGACATCCTACATTTAAGGCAGGTTA 59.842 38.462 0.00 0.00 33.84 2.85
289 290 6.727394 ACATCCTACATTTAAGGCAGGTTAA 58.273 36.000 0.00 0.00 33.84 2.01
290 291 6.602009 ACATCCTACATTTAAGGCAGGTTAAC 59.398 38.462 0.00 0.00 33.84 2.01
291 292 5.503002 TCCTACATTTAAGGCAGGTTAACC 58.497 41.667 17.41 17.41 33.84 2.85
292 293 5.014333 TCCTACATTTAAGGCAGGTTAACCA 59.986 40.000 26.26 3.38 34.52 3.67
293 294 5.712917 CCTACATTTAAGGCAGGTTAACCAA 59.287 40.000 26.26 10.33 38.89 3.67
294 295 6.209788 CCTACATTTAAGGCAGGTTAACCAAA 59.790 38.462 26.26 16.15 38.89 3.28
295 296 6.487299 ACATTTAAGGCAGGTTAACCAAAA 57.513 33.333 26.26 15.04 38.89 2.44
296 297 6.285224 ACATTTAAGGCAGGTTAACCAAAAC 58.715 36.000 26.26 13.00 38.89 2.43
297 298 6.099125 ACATTTAAGGCAGGTTAACCAAAACT 59.901 34.615 26.26 14.94 34.56 2.66
298 299 5.777850 TTAAGGCAGGTTAACCAAAACTC 57.222 39.130 26.26 9.36 30.55 3.01
299 300 3.595190 AGGCAGGTTAACCAAAACTCT 57.405 42.857 26.26 11.31 30.55 3.24
300 301 4.717279 AGGCAGGTTAACCAAAACTCTA 57.283 40.909 26.26 0.00 30.55 2.43
301 302 4.395625 AGGCAGGTTAACCAAAACTCTAC 58.604 43.478 26.26 6.05 30.55 2.59
302 303 4.104261 AGGCAGGTTAACCAAAACTCTACT 59.896 41.667 26.26 8.06 30.55 2.57
345 352 4.967575 CGAAATGTAAATCGTGCCATAACC 59.032 41.667 0.00 0.00 34.48 2.85
357 364 3.509575 GTGCCATAACCAACAAGATTCCA 59.490 43.478 0.00 0.00 0.00 3.53
358 365 4.160252 GTGCCATAACCAACAAGATTCCAT 59.840 41.667 0.00 0.00 0.00 3.41
359 366 5.359576 GTGCCATAACCAACAAGATTCCATA 59.640 40.000 0.00 0.00 0.00 2.74
360 367 6.040842 GTGCCATAACCAACAAGATTCCATAT 59.959 38.462 0.00 0.00 0.00 1.78
361 368 6.610830 TGCCATAACCAACAAGATTCCATATT 59.389 34.615 0.00 0.00 0.00 1.28
362 369 7.147976 GCCATAACCAACAAGATTCCATATTC 58.852 38.462 0.00 0.00 0.00 1.75
363 370 7.661040 CCATAACCAACAAGATTCCATATTCC 58.339 38.462 0.00 0.00 0.00 3.01
399 406 0.671251 TTGCAAAGCTGTAAACCCGG 59.329 50.000 0.00 0.00 0.00 5.73
415 422 3.257133 GGGATCCCCGGGCATTAA 58.743 61.111 21.42 0.00 32.13 1.40
485 492 3.186409 CCAACGTGACCAATGTGAAGTAG 59.814 47.826 0.00 0.00 0.00 2.57
489 496 4.280174 ACGTGACCAATGTGAAGTAGTACT 59.720 41.667 0.00 0.00 0.00 2.73
490 497 5.474532 ACGTGACCAATGTGAAGTAGTACTA 59.525 40.000 2.50 0.00 0.00 1.82
491 498 6.028368 CGTGACCAATGTGAAGTAGTACTAG 58.972 44.000 1.87 0.00 0.00 2.57
500 507 6.381801 TGTGAAGTAGTACTAGCCGTAAAAC 58.618 40.000 1.87 0.00 0.00 2.43
505 512 8.837788 AAGTAGTACTAGCCGTAAAACAAATT 57.162 30.769 1.87 0.00 0.00 1.82
506 513 8.837788 AGTAGTACTAGCCGTAAAACAAATTT 57.162 30.769 1.87 0.00 34.92 1.82
507 514 8.929746 AGTAGTACTAGCCGTAAAACAAATTTC 58.070 33.333 1.87 0.00 32.27 2.17
524 531 7.584987 ACAAATTTCCGAGTAACAGAAAGATG 58.415 34.615 0.00 0.00 33.33 2.90
536 543 3.326006 ACAGAAAGATGCCTGAAGAGTGA 59.674 43.478 0.00 0.00 34.65 3.41
542 549 3.499918 AGATGCCTGAAGAGTGAAAAACG 59.500 43.478 0.00 0.00 0.00 3.60
566 573 1.243902 TGCGAAAAACTAGCCAAGGG 58.756 50.000 0.00 0.00 0.00 3.95
576 583 8.838649 AAAAACTAGCCAAGGGATTTATACAT 57.161 30.769 0.00 0.00 0.00 2.29
600 607 3.443976 CCGAACCAACTCCAAAAACAAG 58.556 45.455 0.00 0.00 0.00 3.16
605 612 2.543653 CCAACTCCAAAAACAAGCCGAG 60.544 50.000 0.00 0.00 0.00 4.63
617 624 4.434545 ACAAGCCGAGATAGTAGGAGTA 57.565 45.455 0.00 0.00 0.00 2.59
618 625 4.136051 ACAAGCCGAGATAGTAGGAGTAC 58.864 47.826 0.00 0.00 0.00 2.73
636 643 1.668419 ACATCTGGTTATTGCCTCGC 58.332 50.000 0.00 0.00 0.00 5.03
643 651 2.403378 TTATTGCCTCGCGCCAACC 61.403 57.895 0.00 0.00 36.24 3.77
773 801 1.078426 CCCCGTACTCCAGCCAAAG 60.078 63.158 0.00 0.00 0.00 2.77
774 802 1.078426 CCCGTACTCCAGCCAAAGG 60.078 63.158 0.00 0.00 0.00 3.11
793 822 3.807553 AGGAGCCAAAACAAAAACCATG 58.192 40.909 0.00 0.00 0.00 3.66
795 824 2.772568 GCCAAAACAAAAACCATGGC 57.227 45.000 13.04 0.00 45.54 4.40
800 829 2.432285 CAAAAACCATGGCCGCCG 60.432 61.111 13.04 0.00 0.00 6.46
856 886 0.039527 ATTTCGCGTGGCCACTTTTC 60.040 50.000 32.28 17.27 0.00 2.29
896 926 2.035449 CCTATAAATCAGACGCCACCGA 59.965 50.000 0.00 0.00 38.29 4.69
919 953 4.765970 TCCCCCAGCCAGCCTCAT 62.766 66.667 0.00 0.00 0.00 2.90
920 954 4.201122 CCCCCAGCCAGCCTCATC 62.201 72.222 0.00 0.00 0.00 2.92
921 955 3.414193 CCCCAGCCAGCCTCATCA 61.414 66.667 0.00 0.00 0.00 3.07
922 956 2.192443 CCCAGCCAGCCTCATCAG 59.808 66.667 0.00 0.00 0.00 2.90
923 957 2.677289 CCCAGCCAGCCTCATCAGT 61.677 63.158 0.00 0.00 0.00 3.41
924 958 1.153208 CCAGCCAGCCTCATCAGTC 60.153 63.158 0.00 0.00 0.00 3.51
925 959 1.600638 CAGCCAGCCTCATCAGTCA 59.399 57.895 0.00 0.00 0.00 3.41
940 980 2.180204 GTCATCACGCCAATCCCGG 61.180 63.158 0.00 0.00 0.00 5.73
982 1022 0.521735 CGCCAACCACTTTCCTAAGC 59.478 55.000 0.00 0.00 34.60 3.09
985 1025 2.162681 CCAACCACTTTCCTAAGCAGG 58.837 52.381 0.00 0.00 44.17 4.85
1098 1138 4.651008 TTCGCCGACACCACGTCC 62.651 66.667 0.00 0.00 42.07 4.79
1284 1324 4.752879 TTCGCCTTCGCCTTCGGG 62.753 66.667 0.00 0.00 36.13 5.14
1467 1507 2.035632 CTCATCTACTCGGCCTTCCTT 58.964 52.381 0.00 0.00 0.00 3.36
1470 1510 1.386533 TCTACTCGGCCTTCCTTACG 58.613 55.000 0.00 0.00 0.00 3.18
1473 1513 2.037687 TCGGCCTTCCTTACGGGA 59.962 61.111 0.00 0.00 43.41 5.14
2022 2062 1.880340 CATCTGCGGCTTCGTCTCC 60.880 63.158 0.00 0.00 36.07 3.71
2499 2542 2.007608 GTCTAACCAATCAAGCCGGAC 58.992 52.381 5.05 0.00 0.00 4.79
2553 2601 0.099791 TGTTCTCGCGCGTCATATCA 59.900 50.000 30.98 18.35 0.00 2.15
2605 2654 1.247419 CGGTGCTGTTTGGGCCAATA 61.247 55.000 21.65 11.54 0.00 1.90
2629 2678 1.495584 GGCGCTCTTGTGTTCGTTCA 61.496 55.000 7.64 0.00 0.00 3.18
2704 2757 1.323534 GTACATGCGTGCGTTTAGAGG 59.676 52.381 5.64 0.00 0.00 3.69
2705 2758 0.037697 ACATGCGTGCGTTTAGAGGA 60.038 50.000 5.64 0.00 0.00 3.71
2746 2801 2.097978 ATCTGCAGGGCTGGGGTTTT 62.098 55.000 15.13 0.00 0.00 2.43
2787 2842 6.648192 TCTTGTCATTTTTGTGGTGGAATTT 58.352 32.000 0.00 0.00 0.00 1.82
2797 2852 5.136816 TGTGGTGGAATTTTGTGATCATG 57.863 39.130 0.00 0.00 0.00 3.07
2825 2880 1.474143 GGTCAAGATAGGTGGCTGCTC 60.474 57.143 0.00 0.00 0.00 4.26
2918 2973 6.148811 TCTCGATCGAATGGCTTTTAGTTTTT 59.851 34.615 19.92 0.00 0.00 1.94
2935 2990 2.298411 TTTCCGCTACGTATGTTCCC 57.702 50.000 0.00 0.00 0.00 3.97
2940 2995 1.204856 GCTACGTATGTTCCCGACGC 61.205 60.000 0.00 0.00 40.19 5.19
2966 3021 9.249457 CTCTATCGAGCTTCACACATATTTTTA 57.751 33.333 0.00 0.00 0.00 1.52
3004 3059 8.292448 TCTAGTTTTCACTCTTCATTTTGATGC 58.708 33.333 0.00 0.00 34.06 3.91
3037 3092 7.287005 CCTAAAAATAATAGGGGGTTGGTTCTC 59.713 40.741 0.00 0.00 36.97 2.87
3100 3167 4.196971 ACAAAACACCTCACAAGAGTACC 58.803 43.478 0.00 0.00 40.40 3.34
3193 3262 7.343833 AGCAATCATATTCAAACCTTCCTTCAT 59.656 33.333 0.00 0.00 0.00 2.57
3197 3266 9.880157 ATCATATTCAAACCTTCCTTCATTTTG 57.120 29.630 0.00 0.00 0.00 2.44
3270 3360 5.335976 GCTATAATTAACCTGGAGCATTGGC 60.336 44.000 0.00 0.00 41.61 4.52
3274 3364 1.187567 AACCTGGAGCATTGGCAACC 61.188 55.000 0.00 0.00 44.61 3.77
3311 3401 4.504461 GTCTCCAATACTTGTGCTCGTATG 59.496 45.833 0.00 0.00 0.00 2.39
3355 3450 0.307760 GCAGTACCAACAGCACACAC 59.692 55.000 0.00 0.00 37.99 3.82
3366 3461 0.179018 AGCACACACCTCCCTTTCAC 60.179 55.000 0.00 0.00 0.00 3.18
3384 3479 6.183360 CCTTTCACTAATCCTGCCAAATAAGG 60.183 42.308 0.00 0.00 34.65 2.69
3422 3517 1.209019 AGATTGGAGAGTGCTTGCGAT 59.791 47.619 0.00 0.00 0.00 4.58
3423 3518 1.329906 GATTGGAGAGTGCTTGCGATG 59.670 52.381 0.00 0.00 0.00 3.84
3424 3519 1.300971 TTGGAGAGTGCTTGCGATGC 61.301 55.000 0.00 0.00 0.00 3.91
3425 3520 2.699809 GAGAGTGCTTGCGATGCG 59.300 61.111 0.00 0.00 0.00 4.73
3426 3521 1.807165 GAGAGTGCTTGCGATGCGA 60.807 57.895 0.00 0.00 0.00 5.10
3428 3523 1.011463 GAGTGCTTGCGATGCGATG 60.011 57.895 0.00 0.00 0.00 3.84
3429 3524 2.649975 GTGCTTGCGATGCGATGC 60.650 61.111 0.00 0.00 0.00 3.91
3430 3525 4.226718 TGCTTGCGATGCGATGCG 62.227 61.111 0.00 0.00 0.00 4.73
3431 3526 3.928769 GCTTGCGATGCGATGCGA 61.929 61.111 0.00 0.00 0.00 5.10
3432 3527 2.244669 CTTGCGATGCGATGCGAG 59.755 61.111 0.00 0.00 36.35 5.03
3433 3528 3.834858 CTTGCGATGCGATGCGAGC 62.835 63.158 0.00 0.00 35.93 5.03
3436 3531 3.750413 CGATGCGATGCGAGCGAG 61.750 66.667 0.00 0.00 37.44 5.03
3437 3532 4.056954 GATGCGATGCGAGCGAGC 62.057 66.667 0.00 0.00 37.44 5.03
3438 3533 4.582207 ATGCGATGCGAGCGAGCT 62.582 61.111 0.00 0.00 38.13 4.09
3439 3534 4.801624 TGCGATGCGAGCGAGCTT 62.802 61.111 0.00 1.66 38.13 3.74
3440 3535 3.982360 GCGATGCGAGCGAGCTTC 61.982 66.667 0.00 9.44 37.77 3.86
3458 3553 2.317609 CGTCTCACCAAGTTGCCGG 61.318 63.158 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.037901 TGCCATGTGTGTTCAAACCAT 58.962 42.857 0.00 0.00 0.00 3.55
1 2 1.478631 TGCCATGTGTGTTCAAACCA 58.521 45.000 0.00 0.00 0.00 3.67
2 3 2.818130 ATGCCATGTGTGTTCAAACC 57.182 45.000 0.00 0.00 0.00 3.27
3 4 4.569966 TCAAAATGCCATGTGTGTTCAAAC 59.430 37.500 0.00 0.00 0.00 2.93
5 6 4.397481 TCAAAATGCCATGTGTGTTCAA 57.603 36.364 0.00 0.00 0.00 2.69
6 7 4.603989 ATCAAAATGCCATGTGTGTTCA 57.396 36.364 0.00 0.00 0.00 3.18
7 8 6.158598 ACTAATCAAAATGCCATGTGTGTTC 58.841 36.000 0.00 0.00 0.00 3.18
8 9 6.100404 ACTAATCAAAATGCCATGTGTGTT 57.900 33.333 0.00 0.00 0.00 3.32
9 10 5.726980 ACTAATCAAAATGCCATGTGTGT 57.273 34.783 0.00 0.00 0.00 3.72
10 11 6.619744 TGTACTAATCAAAATGCCATGTGTG 58.380 36.000 0.00 0.00 0.00 3.82
11 12 6.832520 TGTACTAATCAAAATGCCATGTGT 57.167 33.333 0.00 0.00 0.00 3.72
12 13 6.199531 GCATGTACTAATCAAAATGCCATGTG 59.800 38.462 0.00 0.00 35.50 3.21
13 14 6.275335 GCATGTACTAATCAAAATGCCATGT 58.725 36.000 0.00 0.00 35.50 3.21
14 15 6.758593 GCATGTACTAATCAAAATGCCATG 57.241 37.500 0.00 0.00 35.50 3.66
18 19 6.332630 AGTTGGCATGTACTAATCAAAATGC 58.667 36.000 0.00 0.00 39.68 3.56
19 20 9.853555 TTTAGTTGGCATGTACTAATCAAAATG 57.146 29.630 10.23 0.00 36.89 2.32
21 22 9.073475 ACTTTAGTTGGCATGTACTAATCAAAA 57.927 29.630 10.23 0.00 36.89 2.44
22 23 8.630054 ACTTTAGTTGGCATGTACTAATCAAA 57.370 30.769 10.23 0.00 36.89 2.69
23 24 8.630054 AACTTTAGTTGGCATGTACTAATCAA 57.370 30.769 10.23 0.00 36.89 2.57
24 25 9.727859 TTAACTTTAGTTGGCATGTACTAATCA 57.272 29.630 10.23 0.00 36.89 2.57
27 28 9.727859 TGATTAACTTTAGTTGGCATGTACTAA 57.272 29.630 6.24 6.24 38.90 2.24
28 29 9.158233 GTGATTAACTTTAGTTGGCATGTACTA 57.842 33.333 5.41 0.00 38.90 1.82
29 30 7.663905 TGTGATTAACTTTAGTTGGCATGTACT 59.336 33.333 5.41 0.00 38.90 2.73
30 31 7.749126 GTGTGATTAACTTTAGTTGGCATGTAC 59.251 37.037 5.41 0.00 38.90 2.90
31 32 7.445707 TGTGTGATTAACTTTAGTTGGCATGTA 59.554 33.333 5.41 0.00 38.90 2.29
32 33 6.264292 TGTGTGATTAACTTTAGTTGGCATGT 59.736 34.615 5.41 0.00 38.90 3.21
33 34 6.676950 TGTGTGATTAACTTTAGTTGGCATG 58.323 36.000 5.41 0.00 38.90 4.06
34 35 6.892658 TGTGTGATTAACTTTAGTTGGCAT 57.107 33.333 5.41 0.00 38.90 4.40
35 36 6.294453 CCATGTGTGATTAACTTTAGTTGGCA 60.294 38.462 5.41 0.00 38.90 4.92
36 37 6.092748 CCATGTGTGATTAACTTTAGTTGGC 58.907 40.000 5.41 0.00 38.90 4.52
37 38 6.092748 GCCATGTGTGATTAACTTTAGTTGG 58.907 40.000 5.41 0.00 38.90 3.77
38 39 6.676950 TGCCATGTGTGATTAACTTTAGTTG 58.323 36.000 5.41 0.00 38.90 3.16
39 40 6.892658 TGCCATGTGTGATTAACTTTAGTT 57.107 33.333 0.29 0.29 41.73 2.24
40 41 6.490040 AGTTGCCATGTGTGATTAACTTTAGT 59.510 34.615 0.00 0.00 0.00 2.24
41 42 6.913170 AGTTGCCATGTGTGATTAACTTTAG 58.087 36.000 0.00 0.00 0.00 1.85
42 43 6.892658 AGTTGCCATGTGTGATTAACTTTA 57.107 33.333 0.00 0.00 0.00 1.85
43 44 5.789643 AGTTGCCATGTGTGATTAACTTT 57.210 34.783 0.00 0.00 0.00 2.66
44 45 6.892658 TTAGTTGCCATGTGTGATTAACTT 57.107 33.333 0.00 0.00 30.70 2.66
45 46 6.892658 TTTAGTTGCCATGTGTGATTAACT 57.107 33.333 0.00 0.00 31.95 2.24
46 47 8.532977 AATTTTAGTTGCCATGTGTGATTAAC 57.467 30.769 0.00 0.00 0.00 2.01
49 50 9.723601 AATTAATTTTAGTTGCCATGTGTGATT 57.276 25.926 0.00 0.00 0.00 2.57
51 52 9.632807 GTAATTAATTTTAGTTGCCATGTGTGA 57.367 29.630 5.91 0.00 0.00 3.58
52 53 9.416794 TGTAATTAATTTTAGTTGCCATGTGTG 57.583 29.630 5.91 0.00 0.00 3.82
53 54 9.418045 GTGTAATTAATTTTAGTTGCCATGTGT 57.582 29.630 5.91 0.00 0.00 3.72
54 55 9.416794 TGTGTAATTAATTTTAGTTGCCATGTG 57.583 29.630 5.91 0.00 0.00 3.21
55 56 9.418045 GTGTGTAATTAATTTTAGTTGCCATGT 57.582 29.630 5.91 0.00 0.00 3.21
56 57 8.582930 CGTGTGTAATTAATTTTAGTTGCCATG 58.417 33.333 5.91 0.00 0.00 3.66
57 58 7.274686 GCGTGTGTAATTAATTTTAGTTGCCAT 59.725 33.333 5.91 0.00 0.00 4.40
58 59 6.583050 GCGTGTGTAATTAATTTTAGTTGCCA 59.417 34.615 5.91 0.00 0.00 4.92
59 60 6.583050 TGCGTGTGTAATTAATTTTAGTTGCC 59.417 34.615 5.91 0.00 0.00 4.52
60 61 7.555639 TGCGTGTGTAATTAATTTTAGTTGC 57.444 32.000 5.91 5.73 0.00 4.17
62 63 9.057365 CGAATGCGTGTGTAATTAATTTTAGTT 57.943 29.630 5.91 0.00 0.00 2.24
63 64 7.217447 GCGAATGCGTGTGTAATTAATTTTAGT 59.783 33.333 5.91 0.00 40.36 2.24
64 65 7.535408 GCGAATGCGTGTGTAATTAATTTTAG 58.465 34.615 5.91 0.00 40.36 1.85
65 66 7.425915 GCGAATGCGTGTGTAATTAATTTTA 57.574 32.000 5.91 0.00 40.36 1.52
66 67 6.312645 GCGAATGCGTGTGTAATTAATTTT 57.687 33.333 5.91 0.00 40.36 1.82
67 68 5.925189 GCGAATGCGTGTGTAATTAATTT 57.075 34.783 5.91 0.00 40.36 1.82
82 83 1.595382 ACCCTATGAGCGCGAATGC 60.595 57.895 12.10 0.00 37.91 3.56
83 84 1.224069 CCACCCTATGAGCGCGAATG 61.224 60.000 12.10 0.00 0.00 2.67
84 85 1.069765 CCACCCTATGAGCGCGAAT 59.930 57.895 12.10 1.84 0.00 3.34
85 86 2.499205 CCACCCTATGAGCGCGAA 59.501 61.111 12.10 0.00 0.00 4.70
86 87 3.536917 CCCACCCTATGAGCGCGA 61.537 66.667 12.10 0.00 0.00 5.87
87 88 4.609018 CCCCACCCTATGAGCGCG 62.609 72.222 0.00 0.00 0.00 6.86
88 89 4.256180 CCCCCACCCTATGAGCGC 62.256 72.222 0.00 0.00 0.00 5.92
89 90 2.768344 ACCCCCACCCTATGAGCG 60.768 66.667 0.00 0.00 0.00 5.03
90 91 1.692749 TCACCCCCACCCTATGAGC 60.693 63.158 0.00 0.00 0.00 4.26
91 92 1.700042 GCTCACCCCCACCCTATGAG 61.700 65.000 0.00 0.00 39.84 2.90
92 93 1.692749 GCTCACCCCCACCCTATGA 60.693 63.158 0.00 0.00 0.00 2.15
93 94 1.987807 CTGCTCACCCCCACCCTATG 61.988 65.000 0.00 0.00 0.00 2.23
94 95 1.694169 CTGCTCACCCCCACCCTAT 60.694 63.158 0.00 0.00 0.00 2.57
95 96 2.285368 CTGCTCACCCCCACCCTA 60.285 66.667 0.00 0.00 0.00 3.53
96 97 4.599500 ACTGCTCACCCCCACCCT 62.599 66.667 0.00 0.00 0.00 4.34
97 98 3.580319 AACTGCTCACCCCCACCC 61.580 66.667 0.00 0.00 0.00 4.61
98 99 2.282462 CAACTGCTCACCCCCACC 60.282 66.667 0.00 0.00 0.00 4.61
99 100 2.985847 GCAACTGCTCACCCCCAC 60.986 66.667 0.00 0.00 38.21 4.61
100 101 4.284550 GGCAACTGCTCACCCCCA 62.285 66.667 1.06 0.00 41.70 4.96
101 102 4.284550 TGGCAACTGCTCACCCCC 62.285 66.667 1.06 0.00 41.70 5.40
102 103 2.985847 GTGGCAACTGCTCACCCC 60.986 66.667 1.06 0.00 41.70 4.95
103 104 2.203337 TGTGGCAACTGCTCACCC 60.203 61.111 15.92 0.00 39.68 4.61
104 105 1.227943 TCTGTGGCAACTGCTCACC 60.228 57.895 15.92 0.00 39.68 4.02
105 106 1.233285 CCTCTGTGGCAACTGCTCAC 61.233 60.000 13.25 13.25 40.32 3.51
106 107 1.071987 CCTCTGTGGCAACTGCTCA 59.928 57.895 1.06 1.46 41.70 4.26
107 108 1.673665 CCCTCTGTGGCAACTGCTC 60.674 63.158 1.06 0.00 41.70 4.26
108 109 1.999634 AACCCTCTGTGGCAACTGCT 62.000 55.000 1.06 0.00 41.70 4.24
109 110 1.529244 AACCCTCTGTGGCAACTGC 60.529 57.895 0.00 0.00 41.14 4.40
110 111 0.466189 ACAACCCTCTGTGGCAACTG 60.466 55.000 0.00 0.00 37.61 3.16
111 112 1.136828 TACAACCCTCTGTGGCAACT 58.863 50.000 0.00 0.00 37.61 3.16
112 113 1.812571 CATACAACCCTCTGTGGCAAC 59.187 52.381 0.00 0.00 0.00 4.17
113 114 1.271871 CCATACAACCCTCTGTGGCAA 60.272 52.381 0.00 0.00 0.00 4.52
114 115 0.327924 CCATACAACCCTCTGTGGCA 59.672 55.000 0.00 0.00 0.00 4.92
115 116 0.394352 CCCATACAACCCTCTGTGGC 60.394 60.000 0.00 0.00 0.00 5.01
116 117 1.065418 GTCCCATACAACCCTCTGTGG 60.065 57.143 0.00 0.00 0.00 4.17
117 118 1.405526 CGTCCCATACAACCCTCTGTG 60.406 57.143 0.00 0.00 0.00 3.66
118 119 0.902531 CGTCCCATACAACCCTCTGT 59.097 55.000 0.00 0.00 0.00 3.41
119 120 0.902531 ACGTCCCATACAACCCTCTG 59.097 55.000 0.00 0.00 0.00 3.35
120 121 1.652947 AACGTCCCATACAACCCTCT 58.347 50.000 0.00 0.00 0.00 3.69
121 122 2.484742 AAACGTCCCATACAACCCTC 57.515 50.000 0.00 0.00 0.00 4.30
122 123 2.510613 CAAAACGTCCCATACAACCCT 58.489 47.619 0.00 0.00 0.00 4.34
123 124 1.068125 GCAAAACGTCCCATACAACCC 60.068 52.381 0.00 0.00 0.00 4.11
124 125 1.400500 CGCAAAACGTCCCATACAACC 60.400 52.381 0.00 0.00 36.87 3.77
125 126 1.958417 CGCAAAACGTCCCATACAAC 58.042 50.000 0.00 0.00 36.87 3.32
126 127 0.238817 GCGCAAAACGTCCCATACAA 59.761 50.000 0.30 0.00 46.11 2.41
127 128 1.579084 GGCGCAAAACGTCCCATACA 61.579 55.000 10.83 0.00 46.11 2.29
128 129 1.135939 GGCGCAAAACGTCCCATAC 59.864 57.895 10.83 0.00 46.11 2.39
129 130 3.580916 GGCGCAAAACGTCCCATA 58.419 55.556 10.83 0.00 46.11 2.74
135 136 2.548295 ATGTTCGGGCGCAAAACGT 61.548 52.632 10.83 8.69 46.11 3.99
137 138 1.007849 ACATGTTCGGGCGCAAAAC 60.008 52.632 10.83 10.75 0.00 2.43
138 139 1.007964 CACATGTTCGGGCGCAAAA 60.008 52.632 10.83 0.00 0.00 2.44
139 140 2.642129 CACATGTTCGGGCGCAAA 59.358 55.556 10.83 0.00 0.00 3.68
140 141 3.361158 CCACATGTTCGGGCGCAA 61.361 61.111 10.83 0.00 0.00 4.85
145 146 1.178534 AAACTGCCCACATGTTCGGG 61.179 55.000 15.52 15.52 46.15 5.14
146 147 0.673437 AAAACTGCCCACATGTTCGG 59.327 50.000 0.00 0.00 0.00 4.30
147 148 3.634568 TTAAAACTGCCCACATGTTCG 57.365 42.857 0.00 0.00 0.00 3.95
148 149 6.472163 CGAATATTAAAACTGCCCACATGTTC 59.528 38.462 0.00 0.00 0.00 3.18
149 150 6.151985 TCGAATATTAAAACTGCCCACATGTT 59.848 34.615 0.00 0.00 0.00 2.71
150 151 5.650266 TCGAATATTAAAACTGCCCACATGT 59.350 36.000 0.00 0.00 0.00 3.21
151 152 6.130298 TCGAATATTAAAACTGCCCACATG 57.870 37.500 0.00 0.00 0.00 3.21
152 153 6.545666 TGATCGAATATTAAAACTGCCCACAT 59.454 34.615 0.00 0.00 0.00 3.21
153 154 5.883115 TGATCGAATATTAAAACTGCCCACA 59.117 36.000 0.00 0.00 0.00 4.17
154 155 6.183360 TGTGATCGAATATTAAAACTGCCCAC 60.183 38.462 0.00 0.00 0.00 4.61
155 156 5.883115 TGTGATCGAATATTAAAACTGCCCA 59.117 36.000 0.00 0.00 0.00 5.36
156 157 6.371809 TGTGATCGAATATTAAAACTGCCC 57.628 37.500 0.00 0.00 0.00 5.36
157 158 8.682128 TTTTGTGATCGAATATTAAAACTGCC 57.318 30.769 0.00 0.00 0.00 4.85
158 159 9.554724 TCTTTTGTGATCGAATATTAAAACTGC 57.445 29.630 0.00 0.00 0.00 4.40
166 167 8.347771 CCACATGATCTTTTGTGATCGAATATT 58.652 33.333 19.17 0.00 44.74 1.28
167 168 7.040892 CCCACATGATCTTTTGTGATCGAATAT 60.041 37.037 19.17 0.00 44.74 1.28
168 169 6.260714 CCCACATGATCTTTTGTGATCGAATA 59.739 38.462 19.17 0.00 44.74 1.75
169 170 5.066893 CCCACATGATCTTTTGTGATCGAAT 59.933 40.000 19.17 0.00 44.74 3.34
170 171 4.395854 CCCACATGATCTTTTGTGATCGAA 59.604 41.667 19.17 0.00 44.74 3.71
171 172 3.940852 CCCACATGATCTTTTGTGATCGA 59.059 43.478 19.17 0.00 44.74 3.59
172 173 3.691118 ACCCACATGATCTTTTGTGATCG 59.309 43.478 19.17 11.61 44.74 3.69
173 174 5.404946 CAACCCACATGATCTTTTGTGATC 58.595 41.667 19.17 0.00 44.74 2.92
174 175 4.221262 CCAACCCACATGATCTTTTGTGAT 59.779 41.667 19.17 8.98 44.74 3.06
175 176 3.573538 CCAACCCACATGATCTTTTGTGA 59.426 43.478 19.17 0.00 44.74 3.58
176 177 3.861886 GCCAACCCACATGATCTTTTGTG 60.862 47.826 0.00 13.67 42.25 3.33
177 178 2.299867 GCCAACCCACATGATCTTTTGT 59.700 45.455 0.00 0.00 0.00 2.83
178 179 2.564062 AGCCAACCCACATGATCTTTTG 59.436 45.455 0.00 0.00 0.00 2.44
179 180 2.827921 GAGCCAACCCACATGATCTTTT 59.172 45.455 0.00 0.00 0.00 2.27
180 181 2.450476 GAGCCAACCCACATGATCTTT 58.550 47.619 0.00 0.00 0.00 2.52
181 182 1.341383 GGAGCCAACCCACATGATCTT 60.341 52.381 0.00 0.00 0.00 2.40
182 183 0.257039 GGAGCCAACCCACATGATCT 59.743 55.000 0.00 0.00 0.00 2.75
183 184 0.257039 AGGAGCCAACCCACATGATC 59.743 55.000 0.00 0.00 0.00 2.92
184 185 0.033796 CAGGAGCCAACCCACATGAT 60.034 55.000 0.00 0.00 0.00 2.45
185 186 1.379916 CAGGAGCCAACCCACATGA 59.620 57.895 0.00 0.00 0.00 3.07
186 187 1.679977 CCAGGAGCCAACCCACATG 60.680 63.158 0.00 0.00 0.00 3.21
187 188 2.765969 CCAGGAGCCAACCCACAT 59.234 61.111 0.00 0.00 0.00 3.21
188 189 2.993038 TACCCAGGAGCCAACCCACA 62.993 60.000 0.00 0.00 0.00 4.17
189 190 2.228480 TACCCAGGAGCCAACCCAC 61.228 63.158 0.00 0.00 0.00 4.61
190 191 2.208640 TACCCAGGAGCCAACCCA 59.791 61.111 0.00 0.00 0.00 4.51
191 192 2.675371 GTACCCAGGAGCCAACCC 59.325 66.667 0.00 0.00 0.00 4.11
192 193 2.267961 CGTACCCAGGAGCCAACC 59.732 66.667 0.00 0.00 0.00 3.77
193 194 1.079336 GTCGTACCCAGGAGCCAAC 60.079 63.158 0.00 0.00 0.00 3.77
194 195 2.288025 GGTCGTACCCAGGAGCCAA 61.288 63.158 0.00 0.00 32.28 4.52
195 196 2.682494 GGTCGTACCCAGGAGCCA 60.682 66.667 0.00 0.00 32.28 4.75
196 197 3.834799 CGGTCGTACCCAGGAGCC 61.835 72.222 0.00 0.00 33.75 4.70
197 198 3.834799 CCGGTCGTACCCAGGAGC 61.835 72.222 0.00 0.00 33.75 4.70
198 199 2.044650 TCCGGTCGTACCCAGGAG 60.045 66.667 0.00 0.00 33.75 3.69
199 200 2.361610 GTCCGGTCGTACCCAGGA 60.362 66.667 0.00 0.00 33.75 3.86
200 201 3.818787 CGTCCGGTCGTACCCAGG 61.819 72.222 13.16 0.00 33.75 4.45
201 202 2.747460 TCGTCCGGTCGTACCCAG 60.747 66.667 20.21 0.00 33.75 4.45
202 203 2.747460 CTCGTCCGGTCGTACCCA 60.747 66.667 20.21 0.12 33.75 4.51
203 204 2.747855 ACTCGTCCGGTCGTACCC 60.748 66.667 20.21 0.00 33.75 3.69
204 205 2.787915 GACTCGTCCGGTCGTACC 59.212 66.667 20.21 7.20 34.05 3.34
209 210 1.354506 CCATACGACTCGTCCGGTC 59.645 63.158 7.52 0.00 41.54 4.79
210 211 1.372087 GACCATACGACTCGTCCGGT 61.372 60.000 19.66 19.66 43.72 5.28
211 212 1.354506 GACCATACGACTCGTCCGG 59.645 63.158 7.52 11.98 41.54 5.14
212 213 1.011463 CGACCATACGACTCGTCCG 60.011 63.158 7.52 0.22 41.54 4.79
213 214 1.091771 TCCGACCATACGACTCGTCC 61.092 60.000 7.52 0.00 41.54 4.79
214 215 0.942962 ATCCGACCATACGACTCGTC 59.057 55.000 7.52 0.00 41.54 4.20
215 216 0.661552 CATCCGACCATACGACTCGT 59.338 55.000 9.45 9.45 44.35 4.18
216 217 0.661552 ACATCCGACCATACGACTCG 59.338 55.000 0.00 0.00 35.09 4.18
217 218 1.001597 GGACATCCGACCATACGACTC 60.002 57.143 0.00 0.00 35.09 3.36
218 219 1.030457 GGACATCCGACCATACGACT 58.970 55.000 0.00 0.00 35.09 4.18
219 220 0.742505 TGGACATCCGACCATACGAC 59.257 55.000 0.00 0.00 39.43 4.34
220 221 1.699730 ATGGACATCCGACCATACGA 58.300 50.000 0.00 0.00 44.47 3.43
221 222 2.135139 CAATGGACATCCGACCATACG 58.865 52.381 0.00 0.00 45.37 3.06
222 223 1.873591 GCAATGGACATCCGACCATAC 59.126 52.381 0.00 0.00 45.37 2.39
223 224 1.540146 CGCAATGGACATCCGACCATA 60.540 52.381 0.00 0.00 45.37 2.74
225 226 1.449423 CGCAATGGACATCCGACCA 60.449 57.895 0.00 0.00 41.30 4.02
226 227 2.823829 GCGCAATGGACATCCGACC 61.824 63.158 0.30 0.00 39.43 4.79
227 228 2.709475 GCGCAATGGACATCCGAC 59.291 61.111 0.30 0.00 39.43 4.79
228 229 2.513666 GGCGCAATGGACATCCGA 60.514 61.111 10.83 0.00 39.43 4.55
229 230 2.823593 TGGCGCAATGGACATCCG 60.824 61.111 10.83 2.28 39.43 4.18
230 231 1.386525 ATGTGGCGCAATGGACATCC 61.387 55.000 10.83 0.00 0.00 3.51
231 232 1.308047 TATGTGGCGCAATGGACATC 58.692 50.000 10.83 0.00 31.56 3.06
232 233 1.610038 CATATGTGGCGCAATGGACAT 59.390 47.619 10.83 11.16 33.64 3.06
233 234 1.023502 CATATGTGGCGCAATGGACA 58.976 50.000 10.83 3.68 0.00 4.02
234 235 1.024271 ACATATGTGGCGCAATGGAC 58.976 50.000 10.83 0.00 0.00 4.02
235 236 1.023502 CACATATGTGGCGCAATGGA 58.976 50.000 25.41 0.00 42.10 3.41
236 237 3.555401 CACATATGTGGCGCAATGG 57.445 52.632 25.41 10.06 42.10 3.16
245 246 6.369890 GGATGTCTATAACTGCCACATATGTG 59.630 42.308 26.02 26.02 45.23 3.21
246 247 6.270927 AGGATGTCTATAACTGCCACATATGT 59.729 38.462 1.41 1.41 0.00 2.29
247 248 6.705302 AGGATGTCTATAACTGCCACATATG 58.295 40.000 0.00 0.00 0.00 1.78
248 249 6.942163 AGGATGTCTATAACTGCCACATAT 57.058 37.500 0.00 0.00 0.00 1.78
249 250 6.780522 TGTAGGATGTCTATAACTGCCACATA 59.219 38.462 0.00 0.00 0.00 2.29
250 251 5.602561 TGTAGGATGTCTATAACTGCCACAT 59.397 40.000 0.00 0.00 0.00 3.21
251 252 4.959839 TGTAGGATGTCTATAACTGCCACA 59.040 41.667 0.00 0.00 0.00 4.17
252 253 5.531122 TGTAGGATGTCTATAACTGCCAC 57.469 43.478 0.00 0.00 0.00 5.01
253 254 6.747414 AATGTAGGATGTCTATAACTGCCA 57.253 37.500 0.00 0.00 0.00 4.92
254 255 9.209175 CTTAAATGTAGGATGTCTATAACTGCC 57.791 37.037 0.00 0.00 0.00 4.85
255 256 9.209175 CCTTAAATGTAGGATGTCTATAACTGC 57.791 37.037 0.00 0.00 34.56 4.40
256 257 9.209175 GCCTTAAATGTAGGATGTCTATAACTG 57.791 37.037 0.00 0.00 34.56 3.16
257 258 8.934697 TGCCTTAAATGTAGGATGTCTATAACT 58.065 33.333 0.00 0.00 34.56 2.24
258 259 9.209175 CTGCCTTAAATGTAGGATGTCTATAAC 57.791 37.037 0.00 0.00 34.56 1.89
259 260 8.375506 CCTGCCTTAAATGTAGGATGTCTATAA 58.624 37.037 3.51 0.00 34.56 0.98
260 261 7.512746 ACCTGCCTTAAATGTAGGATGTCTATA 59.487 37.037 13.53 0.00 34.56 1.31
261 262 6.330250 ACCTGCCTTAAATGTAGGATGTCTAT 59.670 38.462 13.53 0.00 34.56 1.98
262 263 5.665812 ACCTGCCTTAAATGTAGGATGTCTA 59.334 40.000 13.53 0.00 34.56 2.59
263 264 4.475016 ACCTGCCTTAAATGTAGGATGTCT 59.525 41.667 13.53 0.00 34.56 3.41
264 265 4.781934 ACCTGCCTTAAATGTAGGATGTC 58.218 43.478 13.53 0.00 34.56 3.06
265 266 4.862641 ACCTGCCTTAAATGTAGGATGT 57.137 40.909 13.53 0.00 34.56 3.06
266 267 6.039382 GGTTAACCTGCCTTAAATGTAGGATG 59.961 42.308 17.83 0.00 34.56 3.51
267 268 6.127101 GGTTAACCTGCCTTAAATGTAGGAT 58.873 40.000 17.83 6.37 34.56 3.24
268 269 5.014333 TGGTTAACCTGCCTTAAATGTAGGA 59.986 40.000 24.78 0.00 34.12 2.94
269 270 5.258051 TGGTTAACCTGCCTTAAATGTAGG 58.742 41.667 24.78 7.10 36.82 3.18
270 271 6.827586 TTGGTTAACCTGCCTTAAATGTAG 57.172 37.500 24.78 0.00 36.82 2.74
271 272 7.288158 AGTTTTGGTTAACCTGCCTTAAATGTA 59.712 33.333 24.78 0.00 36.82 2.29
272 273 6.099125 AGTTTTGGTTAACCTGCCTTAAATGT 59.901 34.615 24.78 4.43 36.82 2.71
273 274 6.521162 AGTTTTGGTTAACCTGCCTTAAATG 58.479 36.000 24.78 0.00 36.82 2.32
274 275 6.553476 AGAGTTTTGGTTAACCTGCCTTAAAT 59.447 34.615 24.78 9.26 36.82 1.40
275 276 5.894964 AGAGTTTTGGTTAACCTGCCTTAAA 59.105 36.000 24.78 12.94 36.82 1.52
276 277 5.451354 AGAGTTTTGGTTAACCTGCCTTAA 58.549 37.500 24.78 7.43 36.82 1.85
277 278 5.056553 AGAGTTTTGGTTAACCTGCCTTA 57.943 39.130 24.78 0.80 36.82 2.69
278 279 3.910989 AGAGTTTTGGTTAACCTGCCTT 58.089 40.909 24.78 8.51 36.82 4.35
279 280 3.595190 AGAGTTTTGGTTAACCTGCCT 57.405 42.857 24.78 14.68 36.82 4.75
280 281 4.395625 AGTAGAGTTTTGGTTAACCTGCC 58.604 43.478 24.78 10.46 36.82 4.85
281 282 6.461640 TCTAGTAGAGTTTTGGTTAACCTGC 58.538 40.000 24.78 12.06 36.82 4.85
282 283 7.097834 CCTCTAGTAGAGTTTTGGTTAACCTG 58.902 42.308 24.78 2.01 40.72 4.00
283 284 6.295745 GCCTCTAGTAGAGTTTTGGTTAACCT 60.296 42.308 24.78 4.52 40.72 3.50
284 285 5.873712 GCCTCTAGTAGAGTTTTGGTTAACC 59.126 44.000 22.78 18.27 40.72 2.85
285 286 6.461640 TGCCTCTAGTAGAGTTTTGGTTAAC 58.538 40.000 22.78 0.00 40.72 2.01
286 287 6.675413 TGCCTCTAGTAGAGTTTTGGTTAA 57.325 37.500 22.78 0.11 40.72 2.01
287 288 6.042322 TGTTGCCTCTAGTAGAGTTTTGGTTA 59.958 38.462 22.78 2.90 40.72 2.85
288 289 5.163237 TGTTGCCTCTAGTAGAGTTTTGGTT 60.163 40.000 22.78 0.00 40.72 3.67
289 290 4.347000 TGTTGCCTCTAGTAGAGTTTTGGT 59.653 41.667 22.78 0.00 40.72 3.67
290 291 4.894784 TGTTGCCTCTAGTAGAGTTTTGG 58.105 43.478 22.78 11.33 40.72 3.28
291 292 8.547967 TTATTGTTGCCTCTAGTAGAGTTTTG 57.452 34.615 22.78 10.70 40.72 2.44
292 293 9.740710 AATTATTGTTGCCTCTAGTAGAGTTTT 57.259 29.630 22.78 6.02 40.72 2.43
294 295 9.819267 GTAATTATTGTTGCCTCTAGTAGAGTT 57.181 33.333 22.78 10.76 40.72 3.01
295 296 9.203163 AGTAATTATTGTTGCCTCTAGTAGAGT 57.797 33.333 22.78 7.72 40.72 3.24
296 297 9.685828 GAGTAATTATTGTTGCCTCTAGTAGAG 57.314 37.037 18.81 18.81 41.96 2.43
297 298 8.350722 CGAGTAATTATTGTTGCCTCTAGTAGA 58.649 37.037 0.00 0.00 0.00 2.59
298 299 8.350722 TCGAGTAATTATTGTTGCCTCTAGTAG 58.649 37.037 0.00 0.00 0.00 2.57
299 300 8.229253 TCGAGTAATTATTGTTGCCTCTAGTA 57.771 34.615 0.00 0.00 0.00 1.82
300 301 7.108841 TCGAGTAATTATTGTTGCCTCTAGT 57.891 36.000 0.00 0.00 0.00 2.57
301 302 8.420374 TTTCGAGTAATTATTGTTGCCTCTAG 57.580 34.615 0.00 0.00 0.00 2.43
302 303 8.826710 CATTTCGAGTAATTATTGTTGCCTCTA 58.173 33.333 0.00 0.00 0.00 2.43
335 342 3.509575 TGGAATCTTGTTGGTTATGGCAC 59.490 43.478 0.00 0.00 0.00 5.01
345 352 5.510179 GCCCATGGAATATGGAATCTTGTTG 60.510 44.000 15.22 0.00 41.64 3.33
357 364 0.557238 TGGTGCTGCCCATGGAATAT 59.443 50.000 15.22 0.00 36.04 1.28
358 365 0.395586 GTGGTGCTGCCCATGGAATA 60.396 55.000 15.22 0.00 36.74 1.75
359 366 1.683365 GTGGTGCTGCCCATGGAAT 60.683 57.895 15.22 0.00 36.74 3.01
360 367 2.283101 GTGGTGCTGCCCATGGAA 60.283 61.111 15.22 0.00 36.74 3.53
361 368 2.444004 ATTGTGGTGCTGCCCATGGA 62.444 55.000 15.22 0.00 36.74 3.41
362 369 1.546589 AATTGTGGTGCTGCCCATGG 61.547 55.000 4.14 4.14 36.74 3.66
363 370 0.390603 CAATTGTGGTGCTGCCCATG 60.391 55.000 12.03 4.27 36.74 3.66
399 406 2.891191 TTATTAATGCCCGGGGATCC 57.109 50.000 29.50 8.64 0.00 3.36
444 451 1.408822 GGGACTGGGCTGTATCTTTGG 60.409 57.143 0.00 0.00 0.00 3.28
485 492 6.017325 CGGAAATTTGTTTTACGGCTAGTAC 58.983 40.000 0.00 0.00 45.99 2.73
500 507 6.524586 GCATCTTTCTGTTACTCGGAAATTTG 59.475 38.462 0.00 5.29 46.31 2.32
505 512 3.260884 AGGCATCTTTCTGTTACTCGGAA 59.739 43.478 0.00 0.00 39.38 4.30
506 513 2.832129 AGGCATCTTTCTGTTACTCGGA 59.168 45.455 0.00 0.00 0.00 4.55
507 514 2.932614 CAGGCATCTTTCTGTTACTCGG 59.067 50.000 0.00 0.00 0.00 4.63
524 531 3.131396 TCTCGTTTTTCACTCTTCAGGC 58.869 45.455 0.00 0.00 0.00 4.85
536 543 5.398416 GCTAGTTTTTCGCAATCTCGTTTTT 59.602 36.000 0.00 0.00 0.00 1.94
542 549 4.406943 CTTGGCTAGTTTTTCGCAATCTC 58.593 43.478 0.00 0.00 0.00 2.75
566 573 5.374071 AGTTGGTTCGGGGATGTATAAATC 58.626 41.667 0.00 0.00 0.00 2.17
576 583 0.551879 TTTTGGAGTTGGTTCGGGGA 59.448 50.000 0.00 0.00 0.00 4.81
600 607 4.393680 CAGATGTACTCCTACTATCTCGGC 59.606 50.000 0.00 0.00 0.00 5.54
605 612 8.030106 GCAATAACCAGATGTACTCCTACTATC 58.970 40.741 0.00 0.00 0.00 2.08
617 624 1.668419 GCGAGGCAATAACCAGATGT 58.332 50.000 0.00 0.00 0.00 3.06
618 625 0.583438 CGCGAGGCAATAACCAGATG 59.417 55.000 0.00 0.00 0.00 2.90
643 651 1.334992 CGTGTACTTGTGCGTCGAGG 61.335 60.000 0.00 0.00 32.04 4.63
650 658 1.076332 GTCCCATCGTGTACTTGTGC 58.924 55.000 0.00 0.00 0.00 4.57
678 686 1.517832 CGTTCCGGAATCTCTGGCT 59.482 57.895 22.04 0.00 42.73 4.75
679 687 4.110493 CGTTCCGGAATCTCTGGC 57.890 61.111 22.04 4.27 42.73 4.85
718 746 4.489771 CTGTGGTGGCCGGGATCC 62.490 72.222 1.92 1.92 0.00 3.36
719 747 2.876368 CTTCTGTGGTGGCCGGGATC 62.876 65.000 2.18 0.00 0.00 3.36
720 748 2.933287 TTCTGTGGTGGCCGGGAT 60.933 61.111 2.18 0.00 0.00 3.85
721 749 3.636231 CTTCTGTGGTGGCCGGGA 61.636 66.667 2.18 0.00 0.00 5.14
722 750 2.484287 AATCTTCTGTGGTGGCCGGG 62.484 60.000 2.18 0.00 0.00 5.73
723 751 1.002134 AATCTTCTGTGGTGGCCGG 60.002 57.895 0.00 0.00 0.00 6.13
724 752 0.321564 TGAATCTTCTGTGGTGGCCG 60.322 55.000 0.00 0.00 0.00 6.13
725 753 1.168714 GTGAATCTTCTGTGGTGGCC 58.831 55.000 0.00 0.00 0.00 5.36
726 754 2.079925 GAGTGAATCTTCTGTGGTGGC 58.920 52.381 0.00 0.00 0.00 5.01
773 801 2.877786 CCATGGTTTTTGTTTTGGCTCC 59.122 45.455 2.57 0.00 0.00 4.70
774 802 2.290367 GCCATGGTTTTTGTTTTGGCTC 59.710 45.455 14.67 0.00 44.81 4.70
793 822 3.712881 GAATATCGTGCGGCGGCC 61.713 66.667 14.25 9.54 41.72 6.13
795 824 3.041940 GGGAATATCGTGCGGCGG 61.042 66.667 9.78 0.00 41.72 6.13
800 829 1.563111 TTCGTTCGGGAATATCGTGC 58.437 50.000 0.00 0.00 0.00 5.34
813 842 0.800631 GGACGGTTGGGATTTCGTTC 59.199 55.000 0.00 0.00 35.91 3.95
844 874 1.949257 CACGGAGAAAAGTGGCCAC 59.051 57.895 29.22 29.22 34.93 5.01
918 952 1.475751 GGGATTGGCGTGATGACTGAT 60.476 52.381 0.00 0.00 0.00 2.90
919 953 0.107703 GGGATTGGCGTGATGACTGA 60.108 55.000 0.00 0.00 0.00 3.41
920 954 1.431488 CGGGATTGGCGTGATGACTG 61.431 60.000 0.00 0.00 0.00 3.51
921 955 1.153369 CGGGATTGGCGTGATGACT 60.153 57.895 0.00 0.00 0.00 3.41
922 956 2.180204 CCGGGATTGGCGTGATGAC 61.180 63.158 0.00 0.00 0.00 3.06
923 957 2.189257 CCGGGATTGGCGTGATGA 59.811 61.111 0.00 0.00 0.00 2.92
924 958 3.585990 GCCGGGATTGGCGTGATG 61.586 66.667 2.18 0.00 46.75 3.07
947 987 1.560292 GCGTTCAGCGATCGGAATC 59.440 57.895 18.30 0.00 44.77 2.52
948 988 3.706140 GCGTTCAGCGATCGGAAT 58.294 55.556 18.30 0.00 44.77 3.01
964 1004 1.541588 CTGCTTAGGAAAGTGGTTGGC 59.458 52.381 0.00 0.00 34.99 4.52
1293 1333 2.384203 CTTCCCGATGAAGCCGTTC 58.616 57.895 2.37 0.00 43.79 3.95
1443 1483 3.191791 GGAAGGCCGAGTAGATGAGATAC 59.808 52.174 0.00 0.00 0.00 2.24
1446 1486 1.215673 AGGAAGGCCGAGTAGATGAGA 59.784 52.381 0.00 0.00 39.96 3.27
1470 1510 1.738432 GACCGGGTAGACGAATCCC 59.262 63.158 6.32 0.00 37.98 3.85
1473 1513 0.962356 ACACGACCGGGTAGACGAAT 60.962 55.000 14.54 0.00 35.47 3.34
2025 2065 3.746949 GAGCCCGATGAGCACCCAG 62.747 68.421 0.00 0.00 0.00 4.45
2469 2512 2.561478 TTGGTTAGACCTGGCTGTTC 57.439 50.000 0.00 0.00 39.58 3.18
2499 2542 5.475719 TCCACTGGATTTCTTGTTACGTAG 58.524 41.667 0.00 0.00 0.00 3.51
2553 2601 3.840078 TCCCATGATCGGATCACATATGT 59.160 43.478 22.09 1.41 43.01 2.29
2605 2654 0.663153 GAACACAAGAGCGCCAAAGT 59.337 50.000 2.29 0.00 0.00 2.66
2611 2660 0.383124 GTGAACGAACACAAGAGCGC 60.383 55.000 0.00 0.00 40.11 5.92
2704 2757 2.079158 CATCCACACACCACACATCTC 58.921 52.381 0.00 0.00 0.00 2.75
2705 2758 1.271543 CCATCCACACACCACACATCT 60.272 52.381 0.00 0.00 0.00 2.90
2746 2801 8.868522 ATGACAAGATATCACCAAGAAAGAAA 57.131 30.769 5.32 0.00 0.00 2.52
2787 2842 1.704628 ACCACACCCTCATGATCACAA 59.295 47.619 0.00 0.00 0.00 3.33
2797 2852 2.093447 CACCTATCTTGACCACACCCTC 60.093 54.545 0.00 0.00 0.00 4.30
2825 2880 6.421801 GGACAAATCTCAACAATTCAACCTTG 59.578 38.462 0.00 0.00 0.00 3.61
2918 2973 0.747644 TCGGGAACATACGTAGCGGA 60.748 55.000 0.08 0.00 0.00 5.54
3037 3092 9.755064 GTGTAAACTAAATATAAGTGTGCACAG 57.245 33.333 22.40 6.83 43.40 3.66
3100 3167 7.486407 TTTAAAACAGGGAGTAGTAGGTAGG 57.514 40.000 0.00 0.00 0.00 3.18
3155 3223 1.996292 TGATTGCTGCGTCTCTACAC 58.004 50.000 0.00 0.00 0.00 2.90
3193 3262 2.176798 TCCCTCTTTTCTGGCTCCAAAA 59.823 45.455 0.00 0.00 0.00 2.44
3197 3266 1.561542 TGATCCCTCTTTTCTGGCTCC 59.438 52.381 0.00 0.00 0.00 4.70
3270 3360 5.046591 TGGAGACAGGAAATAGTAGTGGTTG 60.047 44.000 0.00 0.00 35.01 3.77
3274 3364 8.012957 AGTATTGGAGACAGGAAATAGTAGTG 57.987 38.462 0.00 0.00 44.54 2.74
3311 3401 0.673644 TGAGCCCGCTTTCAGTTAGC 60.674 55.000 0.00 0.00 35.29 3.09
3355 3450 2.422093 GGCAGGATTAGTGAAAGGGAGG 60.422 54.545 0.00 0.00 0.00 4.30
3384 3479 0.519077 CTCTTTCCAACTCCAAGCGC 59.481 55.000 0.00 0.00 0.00 5.92
3422 3517 4.801624 AAGCTCGCTCGCATCGCA 62.802 61.111 0.00 0.00 0.00 5.10
3423 3518 3.982360 GAAGCTCGCTCGCATCGC 61.982 66.667 0.00 0.00 0.00 4.58
3424 3519 3.676348 CGAAGCTCGCTCGCATCG 61.676 66.667 7.19 7.19 43.20 3.84
3425 3520 2.572448 GACGAAGCTCGCTCGCATC 61.572 63.158 6.21 0.00 45.12 3.91
3426 3521 2.580867 GACGAAGCTCGCTCGCAT 60.581 61.111 6.21 0.00 45.12 4.73
3428 3523 2.947109 GAGACGAAGCTCGCTCGC 60.947 66.667 6.21 0.33 45.12 5.03
3429 3524 1.865622 GTGAGACGAAGCTCGCTCG 60.866 63.158 4.77 4.77 45.12 5.03
3430 3525 1.515304 GGTGAGACGAAGCTCGCTC 60.515 63.158 14.31 15.64 45.12 5.03
3431 3526 1.806461 TTGGTGAGACGAAGCTCGCT 61.806 55.000 14.31 4.50 45.12 4.93
3432 3527 1.347817 CTTGGTGAGACGAAGCTCGC 61.348 60.000 5.63 0.00 45.12 5.03
3433 3528 0.039074 ACTTGGTGAGACGAAGCTCG 60.039 55.000 0.00 4.36 46.93 5.03
3434 3529 1.795286 CAACTTGGTGAGACGAAGCTC 59.205 52.381 0.00 0.00 37.43 4.09
3435 3530 1.871080 CAACTTGGTGAGACGAAGCT 58.129 50.000 0.00 0.00 37.43 3.74
3436 3531 0.235926 GCAACTTGGTGAGACGAAGC 59.764 55.000 0.00 0.00 37.43 3.86
3437 3532 0.868406 GGCAACTTGGTGAGACGAAG 59.132 55.000 0.00 0.00 39.42 3.79
3438 3533 0.878523 CGGCAACTTGGTGAGACGAA 60.879 55.000 0.00 0.00 0.00 3.85
3439 3534 1.300620 CGGCAACTTGGTGAGACGA 60.301 57.895 0.00 0.00 0.00 4.20
3440 3535 2.317609 CCGGCAACTTGGTGAGACG 61.318 63.158 0.00 0.00 0.00 4.18
3441 3536 1.966451 CCCGGCAACTTGGTGAGAC 60.966 63.158 0.00 0.00 0.00 3.36
3458 3553 1.600916 GACCTGTGTTGTCCTGGCC 60.601 63.158 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.