Multiple sequence alignment - TraesCS2A01G364400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G364400 chr2A 100.000 3702 0 0 1 3702 608249210 608252911 0.000000e+00 6837.0
1 TraesCS2A01G364400 chr2A 87.984 491 31 11 2429 2905 608262327 608262803 4.180000e-154 555.0
2 TraesCS2A01G364400 chr2A 91.755 376 30 1 1936 2311 608258047 608258421 4.240000e-144 521.0
3 TraesCS2A01G364400 chr2A 94.030 67 3 1 3017 3082 775248155 775248089 2.350000e-17 100.0
4 TraesCS2A01G364400 chr2A 96.970 33 1 0 3027 3059 649477566 649477534 5.160000e-04 56.5
5 TraesCS2A01G364400 chr2D 89.360 1485 98 32 1429 2895 468164014 468165456 0.000000e+00 1812.0
6 TraesCS2A01G364400 chr2D 84.992 1226 93 33 1 1191 468162798 468163967 0.000000e+00 1160.0
7 TraesCS2A01G364400 chr2D 83.648 159 23 2 1697 1855 111000339 111000494 2.980000e-31 147.0
8 TraesCS2A01G364400 chr2D 80.874 183 28 3 2905 3081 57167582 57167763 1.790000e-28 137.0
9 TraesCS2A01G364400 chr2D 78.866 194 35 5 2470 2661 111001746 111001935 3.880000e-25 126.0
10 TraesCS2A01G364400 chr2D 95.000 40 2 0 1372 1411 468163973 468164012 3.090000e-06 63.9
11 TraesCS2A01G364400 chr2B 89.232 1458 88 36 1429 2865 546629372 546630781 0.000000e+00 1759.0
12 TraesCS2A01G364400 chr2B 91.130 823 33 14 1503 2311 546830342 546831138 0.000000e+00 1079.0
13 TraesCS2A01G364400 chr2B 91.461 527 17 9 674 1191 546628816 546629323 0.000000e+00 699.0
14 TraesCS2A01G364400 chr2B 87.826 575 35 12 2346 2905 546780102 546780656 3.120000e-180 641.0
15 TraesCS2A01G364400 chr2B 89.403 519 25 10 2404 2905 546831157 546831662 8.730000e-176 627.0
16 TraesCS2A01G364400 chr2B 94.960 377 14 3 820 1191 546822880 546823256 1.480000e-163 586.0
17 TraesCS2A01G364400 chr2B 84.742 485 45 16 3231 3701 546831941 546832410 3.370000e-125 459.0
18 TraesCS2A01G364400 chr2B 94.872 117 4 2 556 672 546628663 546628777 8.170000e-42 182.0
19 TraesCS2A01G364400 chr2B 77.833 203 37 7 2470 2669 160754792 160754989 6.490000e-23 119.0
20 TraesCS2A01G364400 chr2B 97.500 40 1 0 1372 1411 546629331 546629370 6.630000e-08 69.4
21 TraesCS2A01G364400 chr3D 92.169 166 13 0 1189 1354 545912334 545912169 6.180000e-58 235.0
22 TraesCS2A01G364400 chr7D 91.667 168 14 0 1187 1354 312574295 312574128 2.220000e-57 233.0
23 TraesCS2A01G364400 chr7D 91.617 167 14 0 1189 1355 552951679 552951513 8.000000e-57 231.0
24 TraesCS2A01G364400 chr1D 92.121 165 13 0 1190 1354 286391231 286391067 2.220000e-57 233.0
25 TraesCS2A01G364400 chr1D 83.422 187 26 5 2904 3085 381017612 381017426 6.360000e-38 169.0
26 TraesCS2A01G364400 chr1D 98.000 50 1 0 3004 3053 465098872 465098823 1.830000e-13 87.9
27 TraesCS2A01G364400 chr4D 91.617 167 14 0 1189 1355 457481216 457481050 8.000000e-57 231.0
28 TraesCS2A01G364400 chrUn 90.230 174 17 0 1189 1362 112299216 112299389 1.030000e-55 228.0
29 TraesCS2A01G364400 chr6D 91.071 168 15 0 1187 1354 446509418 446509585 1.030000e-55 228.0
30 TraesCS2A01G364400 chr6D 90.230 174 15 2 1190 1362 41542650 41542478 3.720000e-55 226.0
31 TraesCS2A01G364400 chr5B 90.173 173 16 1 1187 1359 457961842 457962013 1.340000e-54 224.0
32 TraesCS2A01G364400 chr5B 80.272 147 23 3 2942 3082 61148085 61147939 5.060000e-19 106.0
33 TraesCS2A01G364400 chr7B 79.429 175 32 4 2909 3083 517623326 517623156 1.810000e-23 121.0
34 TraesCS2A01G364400 chr5A 91.781 73 6 0 3006 3078 51793103 51793031 6.540000e-18 102.0
35 TraesCS2A01G364400 chr3A 89.744 78 8 0 3004 3081 670750174 670750097 2.350000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G364400 chr2A 608249210 608252911 3701 False 6837.000000 6837 100.00000 1 3702 1 chr2A.!!$F1 3701
1 TraesCS2A01G364400 chr2A 608258047 608262803 4756 False 538.000000 555 89.86950 1936 2905 2 chr2A.!!$F2 969
2 TraesCS2A01G364400 chr2D 468162798 468165456 2658 False 1011.966667 1812 89.78400 1 2895 3 chr2D.!!$F3 2894
3 TraesCS2A01G364400 chr2B 546830342 546832410 2068 False 721.666667 1079 88.42500 1503 3701 3 chr2B.!!$F5 2198
4 TraesCS2A01G364400 chr2B 546628663 546630781 2118 False 677.350000 1759 93.26625 556 2865 4 chr2B.!!$F4 2309
5 TraesCS2A01G364400 chr2B 546780102 546780656 554 False 641.000000 641 87.82600 2346 2905 1 chr2B.!!$F2 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 438 0.033796 CCATTGGCCATGACAGGAGT 60.034 55.0 6.09 0.0 34.31 3.85 F
1426 1480 0.036010 AACCTCTCTTGATGCGTGGG 60.036 55.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1903 1964 0.165944 GACGCACTTGCATGGTGTAC 59.834 55.0 17.59 8.82 42.21 2.9 R
3197 7396 0.322098 TGGCATAACCCGTGAACTGG 60.322 55.0 0.00 0.00 37.83 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.006298 AGTATGGTCAGAATTCTCTCTAACTG 57.994 38.462 4.57 0.00 0.00 3.16
33 34 5.420421 TGGTCAGAATTCTCTCTAACTGGAG 59.580 44.000 4.57 0.00 34.88 3.86
34 35 5.420739 GGTCAGAATTCTCTCTAACTGGAGT 59.579 44.000 4.57 0.00 35.11 3.85
36 37 7.415877 GGTCAGAATTCTCTCTAACTGGAGTAC 60.416 44.444 4.57 0.00 35.11 2.73
43 44 7.440505 TCTCTCTAACTGGAGTACTGACTAT 57.559 40.000 0.00 0.00 35.45 2.12
45 46 8.644216 TCTCTCTAACTGGAGTACTGACTATAG 58.356 40.741 0.00 0.00 35.45 1.31
49 50 7.986320 TCTAACTGGAGTACTGACTATAGTGAC 59.014 40.741 10.90 3.14 35.45 3.67
54 55 5.438833 GAGTACTGACTATAGTGACAGGGT 58.561 45.833 20.08 6.81 35.45 4.34
55 56 5.438833 AGTACTGACTATAGTGACAGGGTC 58.561 45.833 20.08 12.27 34.87 4.46
67 68 0.328258 ACAGGGTCATTTTCCTCCCG 59.672 55.000 0.00 0.00 44.13 5.14
72 73 2.704065 GGGTCATTTTCCTCCCGATCTA 59.296 50.000 0.00 0.00 0.00 1.98
86 87 6.097915 TCCCGATCTATACAACAAAGGATC 57.902 41.667 0.00 0.00 0.00 3.36
87 88 5.839063 TCCCGATCTATACAACAAAGGATCT 59.161 40.000 0.00 0.00 0.00 2.75
91 92 9.360093 CCGATCTATACAACAAAGGATCTTATC 57.640 37.037 0.00 0.00 0.00 1.75
110 111 8.404107 TCTTATCCAACTTTTCAAAAGTAGGG 57.596 34.615 15.98 18.62 0.00 3.53
126 127 4.961585 AGTAGGGTTAGGGAGATTGTTCT 58.038 43.478 0.00 0.00 33.88 3.01
141 142 6.691508 AGATTGTTCTCCAAAGTAAATTGCC 58.308 36.000 0.00 0.00 36.44 4.52
143 144 7.669722 AGATTGTTCTCCAAAGTAAATTGCCTA 59.330 33.333 0.00 0.00 36.44 3.93
154 155 8.872845 CAAAGTAAATTGCCTACCATTCATTTC 58.127 33.333 0.00 0.00 0.00 2.17
157 158 9.646522 AGTAAATTGCCTACCATTCATTTCTAT 57.353 29.630 0.00 0.00 0.00 1.98
160 161 9.822185 AAATTGCCTACCATTCATTTCTATTTC 57.178 29.630 0.00 0.00 0.00 2.17
164 165 6.551227 GCCTACCATTCATTTCTATTTCCCTT 59.449 38.462 0.00 0.00 0.00 3.95
165 166 7.724061 GCCTACCATTCATTTCTATTTCCCTTA 59.276 37.037 0.00 0.00 0.00 2.69
174 175 7.953493 TCATTTCTATTTCCCTTAAACCCACTT 59.047 33.333 0.00 0.00 0.00 3.16
181 182 3.955551 TCCCTTAAACCCACTTGTTCAAC 59.044 43.478 0.00 0.00 0.00 3.18
182 183 3.069016 CCCTTAAACCCACTTGTTCAACC 59.931 47.826 0.00 0.00 0.00 3.77
191 192 4.262377 CCCACTTGTTCAACCATTGCATTA 60.262 41.667 0.00 0.00 0.00 1.90
222 223 1.609239 CAATGCCTAGGAGTGCCCA 59.391 57.895 14.75 0.00 37.41 5.36
227 228 0.038310 GCCTAGGAGTGCCCAGTTTT 59.962 55.000 14.75 0.00 37.41 2.43
295 297 5.783111 ACAAATGTTTATGGCTTCCTTGAC 58.217 37.500 0.00 0.00 0.00 3.18
316 318 3.134458 CGAAGTTGATATCCCAGGCTTC 58.866 50.000 0.00 6.13 32.12 3.86
318 320 2.492025 AGTTGATATCCCAGGCTTCCA 58.508 47.619 0.00 0.00 0.00 3.53
329 331 3.486383 CCAGGCTTCCAACTTTGTTAGA 58.514 45.455 0.00 0.00 0.00 2.10
337 339 9.174166 GGCTTCCAACTTTGTTAGATTAAGATA 57.826 33.333 0.00 0.00 0.00 1.98
355 357 4.615949 AGATAATCGCAGCAAGTAGACAG 58.384 43.478 0.00 0.00 0.00 3.51
364 366 1.903183 GCAAGTAGACAGGGTCTCCTT 59.097 52.381 1.55 0.20 42.40 3.36
370 372 1.768684 GACAGGGTCTCCTTGGCACA 61.769 60.000 0.00 0.00 42.67 4.57
381 383 3.169378 TGGCACAATCCTCTGGCA 58.831 55.556 0.00 0.00 40.40 4.92
383 385 0.681887 TGGCACAATCCTCTGGCATG 60.682 55.000 0.00 0.00 37.99 4.06
384 386 1.389609 GGCACAATCCTCTGGCATGG 61.390 60.000 0.00 0.00 33.24 3.66
386 388 0.681887 CACAATCCTCTGGCATGGCA 60.682 55.000 21.97 21.97 0.00 4.92
387 389 0.040058 ACAATCCTCTGGCATGGCAA 59.960 50.000 23.47 8.71 0.00 4.52
388 390 1.187974 CAATCCTCTGGCATGGCAAA 58.812 50.000 23.47 9.59 0.00 3.68
389 391 1.551430 CAATCCTCTGGCATGGCAAAA 59.449 47.619 23.47 13.05 0.00 2.44
390 392 1.188863 ATCCTCTGGCATGGCAAAAC 58.811 50.000 23.47 0.00 0.00 2.43
404 406 5.998454 TGGCAAAACCATAAACATTTGTG 57.002 34.783 0.00 0.00 46.36 3.33
405 407 4.274459 TGGCAAAACCATAAACATTTGTGC 59.726 37.500 0.00 0.00 46.36 4.57
406 408 4.320129 GGCAAAACCATAAACATTTGTGCC 60.320 41.667 0.00 0.00 40.84 5.01
407 409 4.320129 GCAAAACCATAAACATTTGTGCCC 60.320 41.667 0.00 0.00 0.00 5.36
408 410 3.311486 AACCATAAACATTTGTGCCCG 57.689 42.857 0.00 0.00 0.00 6.13
409 411 1.067213 ACCATAAACATTTGTGCCCGC 60.067 47.619 0.00 0.00 0.00 6.13
410 412 1.067283 CCATAAACATTTGTGCCCGCA 60.067 47.619 0.00 0.00 0.00 5.69
411 413 2.261345 CATAAACATTTGTGCCCGCAG 58.739 47.619 0.00 0.00 0.00 5.18
412 414 1.610363 TAAACATTTGTGCCCGCAGA 58.390 45.000 0.00 0.00 0.00 4.26
413 415 0.314935 AAACATTTGTGCCCGCAGAG 59.685 50.000 0.00 0.00 0.00 3.35
414 416 1.526575 AACATTTGTGCCCGCAGAGG 61.527 55.000 0.00 0.00 40.63 3.69
423 425 1.750399 CCCGCAGAGGAACCATTGG 60.750 63.158 0.00 0.00 45.00 3.16
432 434 0.819582 GGAACCATTGGCCATGACAG 59.180 55.000 6.09 0.00 34.31 3.51
436 438 0.033796 CCATTGGCCATGACAGGAGT 60.034 55.000 6.09 0.00 34.31 3.85
437 439 1.100510 CATTGGCCATGACAGGAGTG 58.899 55.000 6.09 0.00 34.31 3.51
438 440 0.682209 ATTGGCCATGACAGGAGTGC 60.682 55.000 6.09 0.00 0.00 4.40
439 441 2.439156 GGCCATGACAGGAGTGCC 60.439 66.667 0.00 0.00 0.00 5.01
440 442 2.439156 GCCATGACAGGAGTGCCC 60.439 66.667 0.00 0.00 33.31 5.36
441 443 2.124983 CCATGACAGGAGTGCCCG 60.125 66.667 0.00 0.00 40.87 6.13
442 444 2.821366 CATGACAGGAGTGCCCGC 60.821 66.667 0.00 0.00 40.87 6.13
443 445 3.321648 ATGACAGGAGTGCCCGCA 61.322 61.111 0.00 0.00 40.87 5.69
446 448 3.655810 GACAGGAGTGCCCGCAGAG 62.656 68.421 0.00 0.00 40.87 3.35
447 449 4.463879 CAGGAGTGCCCGCAGAGG 62.464 72.222 0.00 0.00 40.87 3.69
448 450 4.704103 AGGAGTGCCCGCAGAGGA 62.704 66.667 0.00 0.00 45.00 3.71
466 469 3.785859 GAGCCACGCCCTCCATCA 61.786 66.667 0.00 0.00 0.00 3.07
469 472 2.124983 CCACGCCCTCCATCACTG 60.125 66.667 0.00 0.00 0.00 3.66
470 473 2.124983 CACGCCCTCCATCACTGG 60.125 66.667 0.00 0.00 44.64 4.00
499 502 1.305219 TTTGGCCGCGGAATCTCAAG 61.305 55.000 33.48 0.00 0.00 3.02
523 526 2.766229 GGGCCAGGAGAGGGAGTC 60.766 72.222 4.39 0.00 0.00 3.36
524 527 2.766229 GGCCAGGAGAGGGAGTCC 60.766 72.222 0.00 0.00 0.00 3.85
525 528 2.039624 GCCAGGAGAGGGAGTCCA 59.960 66.667 12.30 0.00 36.43 4.02
672 678 1.654220 GCTGTTCTCCGCAAGCAAA 59.346 52.632 0.00 0.00 0.00 3.68
674 680 0.040067 CTGTTCTCCGCAAGCAAACC 60.040 55.000 0.00 0.00 0.00 3.27
699 742 1.083806 TCTCGTCCGTGCATGCAATC 61.084 55.000 24.58 10.36 0.00 2.67
772 820 5.234972 CACTCACGCATCTTATCAGCAATTA 59.765 40.000 0.00 0.00 0.00 1.40
773 821 5.464722 ACTCACGCATCTTATCAGCAATTAG 59.535 40.000 0.00 0.00 0.00 1.73
774 822 5.359756 TCACGCATCTTATCAGCAATTAGT 58.640 37.500 0.00 0.00 0.00 2.24
775 823 5.463392 TCACGCATCTTATCAGCAATTAGTC 59.537 40.000 0.00 0.00 0.00 2.59
776 824 4.445718 ACGCATCTTATCAGCAATTAGTCG 59.554 41.667 0.00 0.00 0.00 4.18
777 825 4.665142 CGCATCTTATCAGCAATTAGTCGC 60.665 45.833 0.00 0.00 0.00 5.19
778 826 4.665142 GCATCTTATCAGCAATTAGTCGCG 60.665 45.833 0.00 0.00 0.00 5.87
779 827 2.794910 TCTTATCAGCAATTAGTCGCGC 59.205 45.455 0.00 0.00 0.00 6.86
780 828 2.509052 TATCAGCAATTAGTCGCGCT 57.491 45.000 5.56 4.52 34.29 5.92
781 829 2.509052 ATCAGCAATTAGTCGCGCTA 57.491 45.000 5.56 3.36 32.29 4.26
782 830 1.840181 TCAGCAATTAGTCGCGCTAG 58.160 50.000 5.56 0.00 32.29 3.42
783 831 0.230769 CAGCAATTAGTCGCGCTAGC 59.769 55.000 5.56 4.06 40.74 3.42
784 832 0.103208 AGCAATTAGTCGCGCTAGCT 59.897 50.000 13.93 8.87 42.32 3.32
785 833 0.504807 GCAATTAGTCGCGCTAGCTC 59.495 55.000 13.93 3.37 42.32 4.09
786 834 1.866063 GCAATTAGTCGCGCTAGCTCT 60.866 52.381 13.93 8.27 42.32 4.09
787 835 2.464865 CAATTAGTCGCGCTAGCTCTT 58.535 47.619 13.93 0.00 42.32 2.85
788 836 2.126914 ATTAGTCGCGCTAGCTCTTG 57.873 50.000 13.93 0.00 42.32 3.02
789 837 0.525668 TTAGTCGCGCTAGCTCTTGC 60.526 55.000 13.93 7.72 42.32 4.01
862 911 0.461693 AAGCTCAGCTCGAATGCTCC 60.462 55.000 0.00 0.00 41.98 4.70
864 913 1.152989 GCTCAGCTCGAATGCTCCAG 61.153 60.000 0.00 0.00 41.98 3.86
898 947 1.523032 GCCGGCCGCTACAAATACT 60.523 57.895 22.85 0.00 0.00 2.12
1101 1153 1.293498 CAAGGAGGACGGGTCACTG 59.707 63.158 0.75 0.00 0.00 3.66
1185 1237 2.479837 CAGGTACACTCGCAAACTGAA 58.520 47.619 0.00 0.00 0.00 3.02
1191 1243 4.992381 ACACTCGCAAACTGAATTCTAC 57.008 40.909 7.05 0.00 0.00 2.59
1192 1244 4.632153 ACACTCGCAAACTGAATTCTACT 58.368 39.130 7.05 0.00 0.00 2.57
1193 1245 4.686554 ACACTCGCAAACTGAATTCTACTC 59.313 41.667 7.05 0.00 0.00 2.59
1194 1246 4.092091 CACTCGCAAACTGAATTCTACTCC 59.908 45.833 7.05 0.00 0.00 3.85
1195 1247 3.596214 TCGCAAACTGAATTCTACTCCC 58.404 45.455 7.05 0.00 0.00 4.30
1196 1248 3.260884 TCGCAAACTGAATTCTACTCCCT 59.739 43.478 7.05 0.00 0.00 4.20
1197 1249 3.619038 CGCAAACTGAATTCTACTCCCTC 59.381 47.826 7.05 0.00 0.00 4.30
1198 1250 3.942115 GCAAACTGAATTCTACTCCCTCC 59.058 47.826 7.05 0.00 0.00 4.30
1199 1251 4.184629 CAAACTGAATTCTACTCCCTCCG 58.815 47.826 7.05 0.00 0.00 4.63
1200 1252 3.103080 ACTGAATTCTACTCCCTCCGT 57.897 47.619 7.05 0.00 0.00 4.69
1201 1253 3.442076 ACTGAATTCTACTCCCTCCGTT 58.558 45.455 7.05 0.00 0.00 4.44
1202 1254 3.447944 ACTGAATTCTACTCCCTCCGTTC 59.552 47.826 7.05 0.00 0.00 3.95
1203 1255 2.764572 TGAATTCTACTCCCTCCGTTCC 59.235 50.000 7.05 0.00 0.00 3.62
1204 1256 2.850695 ATTCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
1205 1257 3.967467 ATTCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
1206 1258 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
1207 1259 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
1208 1260 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
1209 1261 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
1210 1262 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
1211 1263 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
1212 1264 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
1213 1265 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1214 1266 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1215 1267 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1216 1268 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1217 1269 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1218 1270 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1219 1271 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1220 1272 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1247 1299 7.539712 AGATTCTAACAAATGACCACATACG 57.460 36.000 0.00 0.00 35.50 3.06
1248 1300 7.327975 AGATTCTAACAAATGACCACATACGA 58.672 34.615 0.00 0.00 35.50 3.43
1249 1301 7.822334 AGATTCTAACAAATGACCACATACGAA 59.178 33.333 0.00 0.00 35.50 3.85
1250 1302 6.961359 TCTAACAAATGACCACATACGAAG 57.039 37.500 0.00 0.00 35.50 3.79
1251 1303 4.419522 AACAAATGACCACATACGAAGC 57.580 40.909 0.00 0.00 35.50 3.86
1252 1304 3.407698 ACAAATGACCACATACGAAGCA 58.592 40.909 0.00 0.00 35.50 3.91
1253 1305 3.818210 ACAAATGACCACATACGAAGCAA 59.182 39.130 0.00 0.00 35.50 3.91
1254 1306 4.277174 ACAAATGACCACATACGAAGCAAA 59.723 37.500 0.00 0.00 35.50 3.68
1255 1307 5.218885 CAAATGACCACATACGAAGCAAAA 58.781 37.500 0.00 0.00 35.50 2.44
1256 1308 3.889196 TGACCACATACGAAGCAAAAC 57.111 42.857 0.00 0.00 0.00 2.43
1257 1309 3.206964 TGACCACATACGAAGCAAAACA 58.793 40.909 0.00 0.00 0.00 2.83
1258 1310 3.628032 TGACCACATACGAAGCAAAACAA 59.372 39.130 0.00 0.00 0.00 2.83
1259 1311 4.219033 GACCACATACGAAGCAAAACAAG 58.781 43.478 0.00 0.00 0.00 3.16
1260 1312 3.630312 ACCACATACGAAGCAAAACAAGT 59.370 39.130 0.00 0.00 0.00 3.16
1261 1313 3.974401 CCACATACGAAGCAAAACAAGTG 59.026 43.478 0.00 0.00 0.00 3.16
1262 1314 4.260990 CCACATACGAAGCAAAACAAGTGA 60.261 41.667 0.00 0.00 0.00 3.41
1263 1315 5.270083 CACATACGAAGCAAAACAAGTGAA 58.730 37.500 0.00 0.00 0.00 3.18
1264 1316 5.914635 CACATACGAAGCAAAACAAGTGAAT 59.085 36.000 0.00 0.00 0.00 2.57
1265 1317 5.914635 ACATACGAAGCAAAACAAGTGAATG 59.085 36.000 0.00 0.00 0.00 2.67
1266 1318 4.370364 ACGAAGCAAAACAAGTGAATGT 57.630 36.364 0.00 0.00 34.24 2.71
1267 1319 5.493133 ACGAAGCAAAACAAGTGAATGTA 57.507 34.783 0.00 0.00 32.02 2.29
1268 1320 5.270853 ACGAAGCAAAACAAGTGAATGTAC 58.729 37.500 0.00 0.00 32.02 2.90
1269 1321 5.163703 ACGAAGCAAAACAAGTGAATGTACA 60.164 36.000 0.00 0.00 32.02 2.90
1270 1322 5.171337 CGAAGCAAAACAAGTGAATGTACAC 59.829 40.000 0.00 0.00 40.60 2.90
1348 1400 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1349 1401 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1350 1402 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1351 1403 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1352 1404 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1353 1405 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1354 1406 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
1355 1407 4.957684 ATTTAGGAACGGAGGGAGTATG 57.042 45.455 0.00 0.00 0.00 2.39
1356 1408 3.393426 TTAGGAACGGAGGGAGTATGT 57.607 47.619 0.00 0.00 0.00 2.29
1357 1409 2.249309 AGGAACGGAGGGAGTATGTT 57.751 50.000 0.00 0.00 0.00 2.71
1358 1410 2.547990 AGGAACGGAGGGAGTATGTTT 58.452 47.619 0.00 0.00 0.00 2.83
1359 1411 2.910977 AGGAACGGAGGGAGTATGTTTT 59.089 45.455 0.00 0.00 0.00 2.43
1360 1412 3.329814 AGGAACGGAGGGAGTATGTTTTT 59.670 43.478 0.00 0.00 0.00 1.94
1411 1465 5.412904 GTGAGTGCTTAAAGAATGCTAACCT 59.587 40.000 0.00 0.00 0.00 3.50
1412 1466 5.643777 TGAGTGCTTAAAGAATGCTAACCTC 59.356 40.000 0.00 0.00 0.00 3.85
1413 1467 5.810095 AGTGCTTAAAGAATGCTAACCTCT 58.190 37.500 0.00 0.00 0.00 3.69
1414 1468 5.877564 AGTGCTTAAAGAATGCTAACCTCTC 59.122 40.000 0.00 0.00 0.00 3.20
1415 1469 5.877564 GTGCTTAAAGAATGCTAACCTCTCT 59.122 40.000 0.00 0.00 0.00 3.10
1416 1470 6.372937 GTGCTTAAAGAATGCTAACCTCTCTT 59.627 38.462 0.00 0.00 0.00 2.85
1417 1471 6.372659 TGCTTAAAGAATGCTAACCTCTCTTG 59.627 38.462 0.00 0.00 0.00 3.02
1418 1472 6.595716 GCTTAAAGAATGCTAACCTCTCTTGA 59.404 38.462 0.00 0.00 0.00 3.02
1419 1473 7.281999 GCTTAAAGAATGCTAACCTCTCTTGAT 59.718 37.037 0.00 0.00 0.00 2.57
1420 1474 6.998968 AAAGAATGCTAACCTCTCTTGATG 57.001 37.500 0.00 0.00 0.00 3.07
1421 1475 4.450053 AGAATGCTAACCTCTCTTGATGC 58.550 43.478 0.00 0.00 0.00 3.91
1422 1476 2.299993 TGCTAACCTCTCTTGATGCG 57.700 50.000 0.00 0.00 0.00 4.73
1423 1477 1.550524 TGCTAACCTCTCTTGATGCGT 59.449 47.619 0.00 0.00 0.00 5.24
1424 1478 1.929836 GCTAACCTCTCTTGATGCGTG 59.070 52.381 0.00 0.00 0.00 5.34
1425 1479 2.544685 CTAACCTCTCTTGATGCGTGG 58.455 52.381 0.00 0.00 0.00 4.94
1426 1480 0.036010 AACCTCTCTTGATGCGTGGG 60.036 55.000 0.00 0.00 0.00 4.61
1427 1481 1.194781 ACCTCTCTTGATGCGTGGGT 61.195 55.000 0.00 0.00 0.00 4.51
1437 1491 3.011119 TGATGCGTGGGTAATTTGTACC 58.989 45.455 0.00 0.00 36.88 3.34
1479 1533 7.002276 ACCTACTTACAAACTATTGGTGCTTT 58.998 34.615 0.00 0.00 41.01 3.51
1606 1664 5.750524 TGCTGCCCTTTGTCATATAAGTAA 58.249 37.500 0.00 0.00 0.00 2.24
1616 1674 7.908827 TTGTCATATAAGTAACCGAAAGCAA 57.091 32.000 0.00 0.00 0.00 3.91
1622 1680 2.152016 AGTAACCGAAAGCAAAGAGGC 58.848 47.619 0.00 0.00 0.00 4.70
1684 1745 0.039256 CGGTCATTGGCCAAAGTGTG 60.039 55.000 24.71 16.46 0.00 3.82
1692 1753 0.584876 GGCCAAAGTGTGTACGTGTC 59.415 55.000 0.00 0.00 0.00 3.67
1693 1754 1.292061 GCCAAAGTGTGTACGTGTCA 58.708 50.000 0.00 0.00 0.00 3.58
1730 1791 4.537433 GAGAAGCTGGCCGCCGAT 62.537 66.667 14.64 0.00 40.39 4.18
1803 1864 0.389817 CGACACGGCCTTCTTCATGA 60.390 55.000 0.00 0.00 0.00 3.07
1896 1957 2.544069 CCGCGACTATTCCTTCTCTTCC 60.544 54.545 8.23 0.00 0.00 3.46
1901 1962 4.038162 CGACTATTCCTTCTCTTCCCGATT 59.962 45.833 0.00 0.00 0.00 3.34
1903 1964 6.568844 CGACTATTCCTTCTCTTCCCGATTAG 60.569 46.154 0.00 0.00 0.00 1.73
1904 1965 6.137559 ACTATTCCTTCTCTTCCCGATTAGT 58.862 40.000 0.00 0.00 0.00 2.24
1905 1966 7.296098 ACTATTCCTTCTCTTCCCGATTAGTA 58.704 38.462 0.00 0.00 0.00 1.82
1908 1969 4.643784 TCCTTCTCTTCCCGATTAGTACAC 59.356 45.833 0.00 0.00 0.00 2.90
1916 1987 2.872245 CCCGATTAGTACACCATGCAAG 59.128 50.000 0.00 0.00 0.00 4.01
1932 2003 4.602259 AGTGCGTCACGGGTGTGG 62.602 66.667 0.00 0.00 46.42 4.17
2278 2357 3.231736 AACACCACCGAGCTCCGT 61.232 61.111 8.47 4.79 36.31 4.69
2311 2390 2.444421 CCACTCCTCAAGGTACGTACT 58.556 52.381 24.07 8.57 36.34 2.73
2313 2392 3.626670 CCACTCCTCAAGGTACGTACTAG 59.373 52.174 24.07 15.59 36.34 2.57
2314 2393 3.626670 CACTCCTCAAGGTACGTACTAGG 59.373 52.174 24.07 22.18 36.34 3.02
2316 2395 4.471386 ACTCCTCAAGGTACGTACTAGGTA 59.529 45.833 24.07 13.67 36.34 3.08
2317 2396 5.131809 ACTCCTCAAGGTACGTACTAGGTAT 59.868 44.000 24.07 14.24 36.34 2.73
2318 2397 6.006275 TCCTCAAGGTACGTACTAGGTATT 57.994 41.667 24.07 8.01 36.34 1.89
2319 2398 6.058183 TCCTCAAGGTACGTACTAGGTATTC 58.942 44.000 24.07 6.00 36.34 1.75
2320 2399 5.049818 CCTCAAGGTACGTACTAGGTATTCG 60.050 48.000 24.07 5.54 0.00 3.34
2321 2400 5.670485 TCAAGGTACGTACTAGGTATTCGA 58.330 41.667 24.07 6.60 0.00 3.71
2322 2401 6.291377 TCAAGGTACGTACTAGGTATTCGAT 58.709 40.000 24.07 0.00 0.00 3.59
2323 2402 6.425114 TCAAGGTACGTACTAGGTATTCGATC 59.575 42.308 24.07 3.91 0.00 3.69
2324 2403 5.858381 AGGTACGTACTAGGTATTCGATCA 58.142 41.667 24.07 0.00 0.00 2.92
2325 2404 5.698545 AGGTACGTACTAGGTATTCGATCAC 59.301 44.000 24.07 2.86 0.00 3.06
2326 2405 5.106908 GGTACGTACTAGGTATTCGATCACC 60.107 48.000 24.07 7.68 34.86 4.02
2327 2406 4.454678 ACGTACTAGGTATTCGATCACCA 58.545 43.478 15.98 4.19 37.28 4.17
2328 2407 5.068636 ACGTACTAGGTATTCGATCACCAT 58.931 41.667 15.98 5.92 37.28 3.55
2329 2408 5.180868 ACGTACTAGGTATTCGATCACCATC 59.819 44.000 15.98 3.59 37.28 3.51
2375 2454 4.864334 GGCTCGGCTGACCATGGG 62.864 72.222 18.09 0.00 34.57 4.00
2376 2455 4.864334 GCTCGGCTGACCATGGGG 62.864 72.222 18.09 6.98 41.29 4.96
2393 2516 2.761208 TGGGGTAAAACACTTTGTGTGG 59.239 45.455 4.01 0.00 46.79 4.17
2403 2526 4.920927 AACACTTTGTGTGGTTTCTTTTCG 59.079 37.500 4.01 0.00 45.79 3.46
2563 6552 3.024547 CTCCGACAAGATGGAGTTCCTA 58.975 50.000 0.00 0.00 45.48 2.94
2715 6704 2.098280 TGAGCTAGCTGATCGACTTCAC 59.902 50.000 24.99 3.11 32.98 3.18
2774 6784 2.162208 TCGGATGCAAATGCTTTCTGTC 59.838 45.455 6.97 0.00 42.66 3.51
2816 6834 2.158957 CCATGCATGTACCTCCGTAAGT 60.159 50.000 24.58 0.00 0.00 2.24
2821 6839 5.736813 TGCATGTACCTCCGTAAGTAAATT 58.263 37.500 0.00 0.00 0.00 1.82
2823 6841 7.329499 TGCATGTACCTCCGTAAGTAAATTTA 58.671 34.615 0.00 0.00 0.00 1.40
2847 6865 6.768515 ATGCGAAATAATTAACAAACGACG 57.231 33.333 0.00 0.00 0.00 5.12
2848 6866 5.677936 TGCGAAATAATTAACAAACGACGT 58.322 33.333 0.00 0.00 0.00 4.34
2865 6887 3.362596 CGACGTTGTTCCAAGTGTATGTG 60.363 47.826 0.00 0.00 0.00 3.21
2877 6899 2.293122 AGTGTATGTGCACGCATGTTTT 59.707 40.909 13.13 0.00 43.61 2.43
2905 6929 3.074412 ACGACTCCCACAAATAGCAAAG 58.926 45.455 0.00 0.00 0.00 2.77
2906 6930 2.420022 CGACTCCCACAAATAGCAAAGG 59.580 50.000 0.00 0.00 0.00 3.11
2907 6931 2.755103 GACTCCCACAAATAGCAAAGGG 59.245 50.000 0.00 0.00 37.65 3.95
2908 6932 2.110011 ACTCCCACAAATAGCAAAGGGT 59.890 45.455 0.00 0.00 37.56 4.34
2909 6933 3.332485 ACTCCCACAAATAGCAAAGGGTA 59.668 43.478 0.00 0.00 37.56 3.69
2910 6934 4.017499 ACTCCCACAAATAGCAAAGGGTAT 60.017 41.667 0.00 0.00 39.31 2.73
2911 6935 4.277476 TCCCACAAATAGCAAAGGGTATG 58.723 43.478 0.00 0.00 37.74 2.39
2912 6936 3.384467 CCCACAAATAGCAAAGGGTATGG 59.616 47.826 0.00 0.00 37.74 2.74
2913 6937 3.181476 CCACAAATAGCAAAGGGTATGGC 60.181 47.826 0.00 0.00 37.74 4.40
2914 6938 3.701040 CACAAATAGCAAAGGGTATGGCT 59.299 43.478 0.00 0.00 37.74 4.75
2915 6939 4.887071 CACAAATAGCAAAGGGTATGGCTA 59.113 41.667 0.00 0.00 42.43 3.93
2916 6940 5.009010 CACAAATAGCAAAGGGTATGGCTAG 59.991 44.000 0.00 0.00 41.63 3.42
2917 6941 4.373156 AATAGCAAAGGGTATGGCTAGG 57.627 45.455 0.00 0.00 41.63 3.02
2918 6942 1.596496 AGCAAAGGGTATGGCTAGGT 58.404 50.000 0.00 0.00 34.25 3.08
2919 6943 1.490910 AGCAAAGGGTATGGCTAGGTC 59.509 52.381 0.00 0.00 34.25 3.85
2920 6944 1.490910 GCAAAGGGTATGGCTAGGTCT 59.509 52.381 0.00 0.00 0.00 3.85
2921 6945 2.485657 GCAAAGGGTATGGCTAGGTCTC 60.486 54.545 0.00 0.00 0.00 3.36
2922 6946 2.771943 CAAAGGGTATGGCTAGGTCTCA 59.228 50.000 0.00 0.00 0.00 3.27
2923 6947 3.352611 AAGGGTATGGCTAGGTCTCAT 57.647 47.619 0.00 0.00 0.00 2.90
2924 6948 3.352611 AGGGTATGGCTAGGTCTCATT 57.647 47.619 0.00 0.00 0.00 2.57
2925 6949 3.243724 AGGGTATGGCTAGGTCTCATTC 58.756 50.000 0.00 0.00 0.00 2.67
2926 6950 2.028930 GGGTATGGCTAGGTCTCATTCG 60.029 54.545 0.00 0.00 0.00 3.34
2927 6951 2.891580 GGTATGGCTAGGTCTCATTCGA 59.108 50.000 0.00 0.00 0.00 3.71
2928 6952 3.305471 GGTATGGCTAGGTCTCATTCGAC 60.305 52.174 0.00 0.00 0.00 4.20
2929 6953 2.145397 TGGCTAGGTCTCATTCGACT 57.855 50.000 0.00 0.00 34.38 4.18
2930 6954 3.292492 TGGCTAGGTCTCATTCGACTA 57.708 47.619 0.00 0.00 34.38 2.59
2931 6955 3.628008 TGGCTAGGTCTCATTCGACTAA 58.372 45.455 0.00 0.00 34.38 2.24
2932 6956 4.021229 TGGCTAGGTCTCATTCGACTAAA 58.979 43.478 0.00 0.00 34.38 1.85
2933 6957 4.464951 TGGCTAGGTCTCATTCGACTAAAA 59.535 41.667 0.00 0.00 34.38 1.52
2934 6958 5.128827 TGGCTAGGTCTCATTCGACTAAAAT 59.871 40.000 0.00 0.00 34.38 1.82
2935 6959 6.049790 GGCTAGGTCTCATTCGACTAAAATT 58.950 40.000 0.00 0.00 34.38 1.82
2936 6960 6.539103 GGCTAGGTCTCATTCGACTAAAATTT 59.461 38.462 0.00 0.00 34.38 1.82
2937 6961 7.709613 GGCTAGGTCTCATTCGACTAAAATTTA 59.290 37.037 0.00 0.00 34.38 1.40
2938 6962 9.095065 GCTAGGTCTCATTCGACTAAAATTTAA 57.905 33.333 0.00 0.00 34.38 1.52
2974 6998 9.539825 AGTTAAGTGACATATTATGCAAGAGAG 57.460 33.333 3.52 0.00 0.00 3.20
2975 6999 9.534565 GTTAAGTGACATATTATGCAAGAGAGA 57.465 33.333 3.52 0.00 0.00 3.10
2978 7002 9.453572 AAGTGACATATTATGCAAGAGAGAAAA 57.546 29.630 3.52 0.00 0.00 2.29
2979 7003 9.453572 AGTGACATATTATGCAAGAGAGAAAAA 57.546 29.630 3.52 0.00 0.00 1.94
2980 7004 9.713740 GTGACATATTATGCAAGAGAGAAAAAG 57.286 33.333 3.52 0.00 0.00 2.27
2981 7005 9.671279 TGACATATTATGCAAGAGAGAAAAAGA 57.329 29.630 3.52 0.00 0.00 2.52
2987 7011 6.949352 ATGCAAGAGAGAAAAAGAAAGTGA 57.051 33.333 0.00 0.00 0.00 3.41
2988 7012 6.949352 TGCAAGAGAGAAAAAGAAAGTGAT 57.051 33.333 0.00 0.00 0.00 3.06
2989 7013 7.338800 TGCAAGAGAGAAAAAGAAAGTGATT 57.661 32.000 0.00 0.00 0.00 2.57
2990 7014 7.775120 TGCAAGAGAGAAAAAGAAAGTGATTT 58.225 30.769 0.00 0.00 0.00 2.17
2991 7015 8.253113 TGCAAGAGAGAAAAAGAAAGTGATTTT 58.747 29.630 0.00 0.00 0.00 1.82
2992 7016 9.091784 GCAAGAGAGAAAAAGAAAGTGATTTTT 57.908 29.630 0.00 0.00 40.37 1.94
3020 7044 9.679661 TTGCATAGGTCTTAATGTAAGATTTCA 57.320 29.630 1.29 0.00 45.63 2.69
3021 7045 9.851686 TGCATAGGTCTTAATGTAAGATTTCAT 57.148 29.630 1.29 0.00 45.63 2.57
3039 7063 9.467796 AGATTTCATGGATATAGTATCGACTGA 57.532 33.333 0.00 0.00 36.28 3.41
3040 7064 9.729023 GATTTCATGGATATAGTATCGACTGAG 57.271 37.037 0.00 0.00 36.28 3.35
3041 7065 8.863872 TTTCATGGATATAGTATCGACTGAGA 57.136 34.615 0.00 0.00 36.28 3.27
3042 7066 7.851387 TCATGGATATAGTATCGACTGAGAC 57.149 40.000 0.00 0.00 36.28 3.36
3044 7068 8.103935 TCATGGATATAGTATCGACTGAGACTT 58.896 37.037 0.00 0.00 43.97 3.01
3045 7069 9.384764 CATGGATATAGTATCGACTGAGACTTA 57.615 37.037 0.00 0.00 43.97 2.24
3046 7070 9.961264 ATGGATATAGTATCGACTGAGACTTAA 57.039 33.333 0.00 0.00 43.97 1.85
3047 7071 9.217278 TGGATATAGTATCGACTGAGACTTAAC 57.783 37.037 0.00 0.00 43.97 2.01
3048 7072 8.382130 GGATATAGTATCGACTGAGACTTAACG 58.618 40.741 0.00 0.00 43.97 3.18
3049 7073 9.138062 GATATAGTATCGACTGAGACTTAACGA 57.862 37.037 0.00 0.00 43.97 3.85
3050 7074 7.783090 ATAGTATCGACTGAGACTTAACGAA 57.217 36.000 0.00 0.00 43.97 3.85
3051 7075 6.109320 AGTATCGACTGAGACTTAACGAAG 57.891 41.667 0.00 0.00 43.97 3.79
3052 7076 5.642919 AGTATCGACTGAGACTTAACGAAGT 59.357 40.000 0.00 0.00 43.97 3.01
3053 7077 6.183360 AGTATCGACTGAGACTTAACGAAGTC 60.183 42.308 9.35 9.35 43.97 3.01
3066 7090 8.522178 ACTTAACGAAGTCTGAGTCAATTAAG 57.478 34.615 14.52 14.52 45.00 1.85
3067 7091 8.358148 ACTTAACGAAGTCTGAGTCAATTAAGA 58.642 33.333 19.05 0.00 45.00 2.10
3068 7092 8.516811 TTAACGAAGTCTGAGTCAATTAAGAC 57.483 34.615 0.00 0.00 45.00 3.01
3080 7104 7.897575 AGTCAATTAAGACTTAGCAAGACTG 57.102 36.000 15.14 0.00 46.26 3.51
3081 7105 7.671302 AGTCAATTAAGACTTAGCAAGACTGA 58.329 34.615 15.14 0.00 46.26 3.41
3082 7106 8.150945 AGTCAATTAAGACTTAGCAAGACTGAA 58.849 33.333 15.14 2.89 46.26 3.02
3083 7107 8.940952 GTCAATTAAGACTTAGCAAGACTGAAT 58.059 33.333 0.00 4.71 36.38 2.57
3086 7110 8.655651 ATTAAGACTTAGCAAGACTGAATAGC 57.344 34.615 8.23 0.00 34.13 2.97
3087 7111 5.667539 AGACTTAGCAAGACTGAATAGCA 57.332 39.130 3.37 0.00 32.40 3.49
3088 7112 6.042638 AGACTTAGCAAGACTGAATAGCAA 57.957 37.500 3.37 0.00 32.40 3.91
3089 7113 6.467677 AGACTTAGCAAGACTGAATAGCAAA 58.532 36.000 3.37 0.00 32.40 3.68
3090 7114 6.370166 AGACTTAGCAAGACTGAATAGCAAAC 59.630 38.462 3.37 0.00 32.40 2.93
3120 7144 6.549364 AGAATGATTTTGGGATTTGGCGTATA 59.451 34.615 0.00 0.00 0.00 1.47
3121 7145 6.723298 ATGATTTTGGGATTTGGCGTATAA 57.277 33.333 0.00 0.00 0.00 0.98
3122 7146 5.897050 TGATTTTGGGATTTGGCGTATAAC 58.103 37.500 0.00 0.00 0.00 1.89
3127 7186 5.061920 TGGGATTTGGCGTATAACAAAAC 57.938 39.130 0.00 0.00 39.69 2.43
3132 7191 1.197264 TGGCGTATAACAAAACCGTGC 59.803 47.619 0.00 0.00 0.00 5.34
3145 7204 4.419522 AAACCGTGCATGAAACATACTC 57.580 40.909 7.72 0.00 0.00 2.59
3153 7212 2.736144 TGAAACATACTCGGCGAAGT 57.264 45.000 12.13 13.62 0.00 3.01
3173 7372 2.941064 GTCCCAATTAACCTCGGCTTAC 59.059 50.000 0.00 0.00 0.00 2.34
3178 7377 6.014840 TCCCAATTAACCTCGGCTTACTATAG 60.015 42.308 0.00 0.00 0.00 1.31
3193 7392 6.624642 GCTTACTATAGGCCGAGTATTGTACC 60.625 46.154 13.81 2.83 0.00 3.34
3194 7393 4.085009 ACTATAGGCCGAGTATTGTACCC 58.915 47.826 4.43 0.00 0.00 3.69
3195 7394 1.321474 TAGGCCGAGTATTGTACCCG 58.679 55.000 0.00 0.00 0.00 5.28
3197 7396 4.744316 CCGAGTATTGTACCCGGC 57.256 61.111 0.00 0.00 43.01 6.13
3198 7397 1.068585 CCGAGTATTGTACCCGGCC 59.931 63.158 0.00 0.00 43.01 6.13
3199 7398 1.678598 CCGAGTATTGTACCCGGCCA 61.679 60.000 2.24 0.00 43.01 5.36
3200 7399 0.249322 CGAGTATTGTACCCGGCCAG 60.249 60.000 2.24 0.00 0.00 4.85
3201 7400 0.828677 GAGTATTGTACCCGGCCAGT 59.171 55.000 2.24 1.20 0.00 4.00
3202 7401 1.208776 GAGTATTGTACCCGGCCAGTT 59.791 52.381 2.24 0.00 0.00 3.16
3203 7402 1.208776 AGTATTGTACCCGGCCAGTTC 59.791 52.381 2.24 0.00 0.00 3.01
3204 7403 1.065998 GTATTGTACCCGGCCAGTTCA 60.066 52.381 2.24 0.14 0.00 3.18
3205 7404 0.322187 ATTGTACCCGGCCAGTTCAC 60.322 55.000 2.24 0.00 0.00 3.18
3206 7405 2.433664 GTACCCGGCCAGTTCACG 60.434 66.667 2.24 0.00 0.00 4.35
3207 7406 3.697747 TACCCGGCCAGTTCACGG 61.698 66.667 2.24 0.00 46.79 4.94
3210 7409 4.636435 CCGGCCAGTTCACGGGTT 62.636 66.667 2.24 0.00 43.69 4.11
3211 7410 2.344500 CGGCCAGTTCACGGGTTA 59.656 61.111 2.24 0.00 33.54 2.85
3212 7411 1.078708 CGGCCAGTTCACGGGTTAT 60.079 57.895 2.24 0.00 33.54 1.89
3213 7412 1.366111 CGGCCAGTTCACGGGTTATG 61.366 60.000 2.24 0.00 33.54 1.90
3214 7413 1.654023 GGCCAGTTCACGGGTTATGC 61.654 60.000 0.00 0.00 33.54 3.14
3215 7414 1.654023 GCCAGTTCACGGGTTATGCC 61.654 60.000 0.00 0.00 33.54 4.40
3216 7415 0.322098 CCAGTTCACGGGTTATGCCA 60.322 55.000 0.00 0.00 39.65 4.92
3217 7416 1.681780 CCAGTTCACGGGTTATGCCAT 60.682 52.381 0.00 0.00 39.65 4.40
3218 7417 1.401552 CAGTTCACGGGTTATGCCATG 59.598 52.381 0.00 0.00 39.65 3.66
3219 7418 1.004277 AGTTCACGGGTTATGCCATGT 59.996 47.619 0.00 0.00 39.65 3.21
3220 7419 2.237643 AGTTCACGGGTTATGCCATGTA 59.762 45.455 0.00 0.00 39.65 2.29
3221 7420 2.319136 TCACGGGTTATGCCATGTAC 57.681 50.000 0.00 0.00 39.65 2.90
3222 7421 0.934496 CACGGGTTATGCCATGTACG 59.066 55.000 0.00 0.00 39.65 3.67
3223 7422 0.812412 ACGGGTTATGCCATGTACGC 60.812 55.000 0.00 0.00 39.65 4.42
3224 7423 1.503818 CGGGTTATGCCATGTACGCC 61.504 60.000 0.00 0.00 39.65 5.68
3225 7424 0.464735 GGGTTATGCCATGTACGCCA 60.465 55.000 0.00 0.00 39.65 5.69
3226 7425 1.384525 GGTTATGCCATGTACGCCAA 58.615 50.000 0.00 0.00 37.17 4.52
3227 7426 1.333619 GGTTATGCCATGTACGCCAAG 59.666 52.381 0.00 0.00 37.17 3.61
3228 7427 2.285083 GTTATGCCATGTACGCCAAGA 58.715 47.619 0.00 0.00 0.00 3.02
3229 7428 2.878406 GTTATGCCATGTACGCCAAGAT 59.122 45.455 0.00 0.00 0.00 2.40
3248 7447 3.576982 AGATTCAGTTCACGGGTACTCAA 59.423 43.478 0.00 0.00 0.00 3.02
3254 7453 5.011329 TCAGTTCACGGGTACTCAACTTAAT 59.989 40.000 0.00 0.00 0.00 1.40
3255 7454 6.209192 TCAGTTCACGGGTACTCAACTTAATA 59.791 38.462 0.00 0.00 0.00 0.98
3256 7455 6.869913 CAGTTCACGGGTACTCAACTTAATAA 59.130 38.462 0.00 0.00 0.00 1.40
3282 7481 3.831715 AGCCGAGTTCAAAATAACTGC 57.168 42.857 0.00 0.00 39.78 4.40
3283 7482 3.412386 AGCCGAGTTCAAAATAACTGCT 58.588 40.909 0.00 0.00 39.78 4.24
3284 7483 3.437049 AGCCGAGTTCAAAATAACTGCTC 59.563 43.478 0.00 0.00 39.78 4.26
3285 7484 3.437049 GCCGAGTTCAAAATAACTGCTCT 59.563 43.478 0.00 0.00 39.78 4.09
3286 7485 4.436183 GCCGAGTTCAAAATAACTGCTCTC 60.436 45.833 0.00 0.00 39.78 3.20
3287 7486 4.201628 CCGAGTTCAAAATAACTGCTCTCG 60.202 45.833 0.00 0.00 39.78 4.04
3290 7489 1.999735 TCAAAATAACTGCTCTCGGCG 59.000 47.619 0.00 0.00 45.43 6.46
3295 7494 3.728076 ATAACTGCTCTCGGCGAAATA 57.272 42.857 12.13 0.00 45.43 1.40
3306 7505 3.787785 TCGGCGAAATAAAGCTACATGA 58.212 40.909 7.35 0.00 0.00 3.07
3309 7508 3.554324 GGCGAAATAAAGCTACATGACGA 59.446 43.478 0.00 0.00 0.00 4.20
3310 7509 4.211374 GGCGAAATAAAGCTACATGACGAT 59.789 41.667 0.00 0.00 0.00 3.73
3367 7566 2.748209 GGTACAAGGCAATACCCCAT 57.252 50.000 0.00 0.00 40.58 4.00
3391 7590 7.131498 TCACTTTAAAATGGCAAAATGATGC 57.869 32.000 0.00 0.00 45.67 3.91
3404 7603 9.970395 TGGCAAAATGATGCTAATTAATTAGAG 57.030 29.630 30.76 14.64 45.68 2.43
3405 7604 9.415544 GGCAAAATGATGCTAATTAATTAGAGG 57.584 33.333 30.76 12.45 45.68 3.69
3410 7609 8.954950 ATGATGCTAATTAATTAGAGGGATCG 57.045 34.615 30.76 10.00 41.72 3.69
3412 7611 6.109156 TGCTAATTAATTAGAGGGATCGCA 57.891 37.500 30.76 19.75 41.72 5.10
3419 7618 7.873719 TTAATTAGAGGGATCGCAAAATTGA 57.126 32.000 12.83 8.27 0.00 2.57
3428 7627 1.809547 TCGCAAAATTGAGGCATCGAA 59.190 42.857 0.00 0.00 0.00 3.71
3430 7629 2.595536 CGCAAAATTGAGGCATCGAAAG 59.404 45.455 0.00 0.00 0.00 2.62
3446 7645 4.806330 TCGAAAGAGCGATGAAAACTAGT 58.194 39.130 0.00 0.00 35.01 2.57
3448 7647 5.345202 TCGAAAGAGCGATGAAAACTAGTTC 59.655 40.000 8.95 0.00 35.01 3.01
3452 7651 5.164954 AGAGCGATGAAAACTAGTTCAGAC 58.835 41.667 8.95 2.18 40.72 3.51
3453 7652 4.883083 AGCGATGAAAACTAGTTCAGACA 58.117 39.130 8.95 7.40 40.72 3.41
3454 7653 4.926238 AGCGATGAAAACTAGTTCAGACAG 59.074 41.667 8.95 1.50 40.72 3.51
3455 7654 4.923871 GCGATGAAAACTAGTTCAGACAGA 59.076 41.667 8.95 0.00 40.72 3.41
3457 7656 6.091441 GCGATGAAAACTAGTTCAGACAGAAT 59.909 38.462 8.95 0.00 40.72 2.40
3458 7657 7.670916 CGATGAAAACTAGTTCAGACAGAATC 58.329 38.462 8.95 3.86 40.72 2.52
3460 7659 6.745116 TGAAAACTAGTTCAGACAGAATCGA 58.255 36.000 8.95 0.00 38.76 3.59
3461 7660 7.378966 TGAAAACTAGTTCAGACAGAATCGAT 58.621 34.615 8.95 0.00 38.76 3.59
3462 7661 7.329471 TGAAAACTAGTTCAGACAGAATCGATG 59.671 37.037 8.95 0.00 38.76 3.84
3463 7662 6.516739 AACTAGTTCAGACAGAATCGATGA 57.483 37.500 1.12 0.00 38.76 2.92
3464 7663 6.130298 ACTAGTTCAGACAGAATCGATGAG 57.870 41.667 0.00 0.00 38.76 2.90
3465 7664 5.883115 ACTAGTTCAGACAGAATCGATGAGA 59.117 40.000 0.00 0.00 38.76 3.27
3466 7665 5.651387 AGTTCAGACAGAATCGATGAGAA 57.349 39.130 0.00 0.00 38.76 2.87
3467 7666 6.030548 AGTTCAGACAGAATCGATGAGAAA 57.969 37.500 0.00 0.00 38.76 2.52
3468 7667 6.459066 AGTTCAGACAGAATCGATGAGAAAA 58.541 36.000 0.00 0.00 38.76 2.29
3473 7672 6.589523 CAGACAGAATCGATGAGAAAAAGAGT 59.410 38.462 0.00 0.00 0.00 3.24
3601 7819 4.576879 GGAGTTTCTTTCATCGGGTACTT 58.423 43.478 0.00 0.00 0.00 2.24
3661 7881 0.741927 TAAGGTAAGCCGAAAGCCGC 60.742 55.000 0.00 0.00 45.47 6.53
3663 7883 2.744709 GTAAGCCGAAAGCCGCCA 60.745 61.111 0.00 0.00 45.47 5.69
3665 7885 2.949909 TAAGCCGAAAGCCGCCAGA 61.950 57.895 0.00 0.00 45.47 3.86
3672 7892 3.767630 AAAGCCGCCAGACAACCGT 62.768 57.895 0.00 0.00 0.00 4.83
3696 7916 3.347077 GCTTATAGCCTGCTCCATCAT 57.653 47.619 0.00 0.00 34.48 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 7.126061 TCCAGTTAGAGAGAATTCTGACCATA 58.874 38.462 14.00 0.00 35.06 2.74
9 10 5.333581 TCCAGTTAGAGAGAATTCTGACCA 58.666 41.667 14.00 0.00 35.06 4.02
12 13 7.338196 CAGTACTCCAGTTAGAGAGAATTCTGA 59.662 40.741 14.00 0.00 37.33 3.27
15 16 7.338449 AGTCAGTACTCCAGTTAGAGAGAATTC 59.662 40.741 0.00 0.00 37.33 2.17
30 31 4.822896 CCCTGTCACTATAGTCAGTACTCC 59.177 50.000 16.37 0.00 37.15 3.85
33 34 5.191426 TGACCCTGTCACTATAGTCAGTAC 58.809 45.833 16.37 8.34 37.67 2.73
34 35 5.446260 TGACCCTGTCACTATAGTCAGTA 57.554 43.478 16.37 2.72 37.67 2.74
36 37 5.860941 AATGACCCTGTCACTATAGTCAG 57.139 43.478 12.55 12.55 45.65 3.51
43 44 3.263425 GGAGGAAAATGACCCTGTCACTA 59.737 47.826 0.00 0.00 45.65 2.74
45 46 2.437413 GGAGGAAAATGACCCTGTCAC 58.563 52.381 0.00 0.00 45.65 3.67
49 50 0.618458 TCGGGAGGAAAATGACCCTG 59.382 55.000 0.00 0.00 40.12 4.45
54 55 6.099125 TGTTGTATAGATCGGGAGGAAAATGA 59.901 38.462 0.00 0.00 0.00 2.57
55 56 6.288294 TGTTGTATAGATCGGGAGGAAAATG 58.712 40.000 0.00 0.00 0.00 2.32
86 87 8.178313 ACCCTACTTTTGAAAAGTTGGATAAG 57.822 34.615 35.95 26.10 42.95 1.73
87 88 8.541899 AACCCTACTTTTGAAAAGTTGGATAA 57.458 30.769 35.95 16.96 42.95 1.75
91 92 6.239204 CCCTAACCCTACTTTTGAAAAGTTGG 60.239 42.308 31.04 31.04 40.99 3.77
126 127 6.013379 TGAATGGTAGGCAATTTACTTTGGA 58.987 36.000 0.00 0.00 0.00 3.53
129 130 8.815912 AGAAATGAATGGTAGGCAATTTACTTT 58.184 29.630 0.00 0.00 0.00 2.66
143 144 8.758829 GGTTTAAGGGAAATAGAAATGAATGGT 58.241 33.333 0.00 0.00 0.00 3.55
154 155 6.492087 TGAACAAGTGGGTTTAAGGGAAATAG 59.508 38.462 0.00 0.00 0.00 1.73
157 158 4.611367 TGAACAAGTGGGTTTAAGGGAAA 58.389 39.130 0.00 0.00 0.00 3.13
160 161 3.069016 GGTTGAACAAGTGGGTTTAAGGG 59.931 47.826 0.00 0.00 28.49 3.95
164 165 4.442192 GCAATGGTTGAACAAGTGGGTTTA 60.442 41.667 2.09 0.00 0.00 2.01
165 166 3.681313 GCAATGGTTGAACAAGTGGGTTT 60.681 43.478 2.09 0.00 0.00 3.27
174 175 7.615582 TTGTTTTTAATGCAATGGTTGAACA 57.384 28.000 0.00 0.00 0.00 3.18
181 182 5.469421 TGGAGCTTTGTTTTTAATGCAATGG 59.531 36.000 0.00 0.00 34.30 3.16
182 183 6.542574 TGGAGCTTTGTTTTTAATGCAATG 57.457 33.333 0.00 0.00 34.30 2.82
191 192 3.843893 AGGCATTGGAGCTTTGTTTTT 57.156 38.095 0.00 0.00 34.17 1.94
240 241 9.797556 GGGGTGACTTTAACATTATTATGAAAC 57.202 33.333 0.00 0.00 35.65 2.78
265 266 6.538381 GGAAGCCATAAACATTTGTTATTGGG 59.462 38.462 18.64 10.62 39.05 4.12
295 297 2.918712 AGCCTGGGATATCAACTTCG 57.081 50.000 4.83 0.00 0.00 3.79
304 306 2.378547 ACAAAGTTGGAAGCCTGGGATA 59.621 45.455 0.00 0.00 0.00 2.59
316 318 9.651718 GCGATTATCTTAATCTAACAAAGTTGG 57.348 33.333 5.89 0.00 0.00 3.77
329 331 7.210174 TGTCTACTTGCTGCGATTATCTTAAT 58.790 34.615 0.00 0.00 0.00 1.40
337 339 1.406069 CCCTGTCTACTTGCTGCGATT 60.406 52.381 0.00 0.00 0.00 3.34
340 342 0.737715 GACCCTGTCTACTTGCTGCG 60.738 60.000 0.00 0.00 0.00 5.18
355 357 0.681243 GGATTGTGCCAAGGAGACCC 60.681 60.000 0.00 0.00 0.00 4.46
364 366 0.681887 CATGCCAGAGGATTGTGCCA 60.682 55.000 0.00 0.00 0.00 4.92
370 372 1.551883 GTTTTGCCATGCCAGAGGATT 59.448 47.619 0.00 0.00 0.00 3.01
371 373 1.188863 GTTTTGCCATGCCAGAGGAT 58.811 50.000 0.00 0.00 0.00 3.24
372 374 0.899717 GGTTTTGCCATGCCAGAGGA 60.900 55.000 0.00 0.00 37.17 3.71
374 376 2.353858 TGGTTTTGCCATGCCAGAG 58.646 52.632 0.00 0.00 43.61 3.35
375 377 4.615170 TGGTTTTGCCATGCCAGA 57.385 50.000 0.00 0.00 43.61 3.86
383 385 4.320129 GGCACAAATGTTTATGGTTTTGCC 60.320 41.667 0.00 0.00 34.82 4.52
384 386 4.320129 GGGCACAAATGTTTATGGTTTTGC 60.320 41.667 0.00 0.00 33.43 3.68
386 388 4.061596 CGGGCACAAATGTTTATGGTTTT 58.938 39.130 0.00 0.00 0.00 2.43
387 389 3.658709 CGGGCACAAATGTTTATGGTTT 58.341 40.909 0.00 0.00 0.00 3.27
388 390 2.611722 GCGGGCACAAATGTTTATGGTT 60.612 45.455 0.00 0.00 0.00 3.67
389 391 1.067213 GCGGGCACAAATGTTTATGGT 60.067 47.619 0.00 0.00 0.00 3.55
390 392 1.067283 TGCGGGCACAAATGTTTATGG 60.067 47.619 0.00 0.00 0.00 2.74
392 394 2.164219 CTCTGCGGGCACAAATGTTTAT 59.836 45.455 0.00 0.00 0.00 1.40
393 395 1.539388 CTCTGCGGGCACAAATGTTTA 59.461 47.619 0.00 0.00 0.00 2.01
394 396 0.314935 CTCTGCGGGCACAAATGTTT 59.685 50.000 0.00 0.00 0.00 2.83
395 397 1.526575 CCTCTGCGGGCACAAATGTT 61.527 55.000 0.00 0.00 0.00 2.71
396 398 1.973281 CCTCTGCGGGCACAAATGT 60.973 57.895 0.00 0.00 0.00 2.71
397 399 1.243342 TTCCTCTGCGGGCACAAATG 61.243 55.000 0.00 0.00 0.00 2.32
398 400 1.074775 TTCCTCTGCGGGCACAAAT 59.925 52.632 0.00 0.00 0.00 2.32
399 401 1.896660 GTTCCTCTGCGGGCACAAA 60.897 57.895 0.00 0.00 0.00 2.83
400 402 2.281484 GTTCCTCTGCGGGCACAA 60.281 61.111 0.00 0.00 0.00 3.33
401 403 4.329545 GGTTCCTCTGCGGGCACA 62.330 66.667 0.00 0.00 0.00 4.57
402 404 3.628646 ATGGTTCCTCTGCGGGCAC 62.629 63.158 0.00 0.00 0.00 5.01
403 405 2.905996 AATGGTTCCTCTGCGGGCA 61.906 57.895 0.00 0.00 0.00 5.36
404 406 2.044946 AATGGTTCCTCTGCGGGC 60.045 61.111 0.00 0.00 0.00 6.13
405 407 1.750399 CCAATGGTTCCTCTGCGGG 60.750 63.158 0.00 0.00 0.00 6.13
406 408 2.409870 GCCAATGGTTCCTCTGCGG 61.410 63.158 0.00 0.00 0.00 5.69
407 409 2.409870 GGCCAATGGTTCCTCTGCG 61.410 63.158 0.00 0.00 0.00 5.18
408 410 0.685458 ATGGCCAATGGTTCCTCTGC 60.685 55.000 10.96 0.00 0.00 4.26
409 411 1.108776 CATGGCCAATGGTTCCTCTG 58.891 55.000 10.96 0.00 32.10 3.35
410 412 1.002069 TCATGGCCAATGGTTCCTCT 58.998 50.000 10.96 0.00 36.86 3.69
411 413 1.106285 GTCATGGCCAATGGTTCCTC 58.894 55.000 10.96 0.00 36.86 3.71
412 414 0.409092 TGTCATGGCCAATGGTTCCT 59.591 50.000 10.96 0.00 36.86 3.36
413 415 0.819582 CTGTCATGGCCAATGGTTCC 59.180 55.000 10.96 0.00 36.86 3.62
414 416 0.819582 CCTGTCATGGCCAATGGTTC 59.180 55.000 10.96 4.62 36.86 3.62
423 425 2.439156 GGGCACTCCTGTCATGGC 60.439 66.667 0.00 0.00 38.14 4.40
432 434 4.154347 CTCCTCTGCGGGCACTCC 62.154 72.222 0.00 0.00 0.00 3.85
438 440 4.154347 GTGGCTCTCCTCTGCGGG 62.154 72.222 0.00 0.00 0.00 6.13
439 441 4.504916 CGTGGCTCTCCTCTGCGG 62.505 72.222 0.00 0.00 0.00 5.69
441 443 4.828925 GGCGTGGCTCTCCTCTGC 62.829 72.222 0.00 0.00 0.00 4.26
442 444 4.154347 GGGCGTGGCTCTCCTCTG 62.154 72.222 0.00 0.00 0.00 3.35
443 445 4.390556 AGGGCGTGGCTCTCCTCT 62.391 66.667 0.00 0.00 31.40 3.69
448 450 3.474570 GATGGAGGGCGTGGCTCT 61.475 66.667 0.00 0.00 44.87 4.09
466 469 0.178990 GCCAAAAGGTGTCTCCCAGT 60.179 55.000 0.00 0.00 36.75 4.00
469 472 1.971695 CGGCCAAAAGGTGTCTCCC 60.972 63.158 2.24 0.00 36.75 4.30
470 473 2.626780 GCGGCCAAAAGGTGTCTCC 61.627 63.158 2.24 0.00 0.00 3.71
499 502 3.011517 TCTCCTGGCCCTCCTTGC 61.012 66.667 0.00 0.00 0.00 4.01
523 526 1.613836 AGCAAAGCTCTGTCCTTTGG 58.386 50.000 17.58 0.00 45.70 3.28
525 528 2.883386 CTCAAGCAAAGCTCTGTCCTTT 59.117 45.455 0.00 0.00 38.25 3.11
534 537 1.727511 TTGCACGCTCAAGCAAAGCT 61.728 50.000 2.50 0.00 46.65 3.74
651 657 1.968540 GCTTGCGGAGAACAGCCTT 60.969 57.895 0.00 0.00 36.45 4.35
672 678 1.816537 CACGGACGAGATGGATGGT 59.183 57.895 0.00 0.00 0.00 3.55
674 680 0.249615 ATGCACGGACGAGATGGATG 60.250 55.000 0.00 0.00 0.00 3.51
772 820 2.202676 GCAAGAGCTAGCGCGACT 60.203 61.111 12.10 9.58 42.32 4.18
782 830 5.456822 CCGCAATTAATTAAAGAGCAAGAGC 59.543 40.000 15.57 0.00 42.56 4.09
783 831 5.456822 GCCGCAATTAATTAAAGAGCAAGAG 59.543 40.000 15.57 6.40 0.00 2.85
784 832 5.339990 GCCGCAATTAATTAAAGAGCAAGA 58.660 37.500 15.57 0.00 0.00 3.02
785 833 4.504097 GGCCGCAATTAATTAAAGAGCAAG 59.496 41.667 15.57 9.72 0.00 4.01
786 834 4.081972 TGGCCGCAATTAATTAAAGAGCAA 60.082 37.500 15.57 5.60 0.00 3.91
787 835 3.445450 TGGCCGCAATTAATTAAAGAGCA 59.555 39.130 15.57 2.79 0.00 4.26
788 836 4.040445 TGGCCGCAATTAATTAAAGAGC 57.960 40.909 1.21 6.00 0.00 4.09
789 837 4.803613 GGTTGGCCGCAATTAATTAAAGAG 59.196 41.667 1.21 0.46 0.00 2.85
845 894 1.152989 CTGGAGCATTCGAGCTGAGC 61.153 60.000 3.59 0.00 46.75 4.26
898 947 2.910479 ACGAGCACCCAGTCACGA 60.910 61.111 0.00 0.00 0.00 4.35
1007 1056 0.778815 GCTAACAAGGATCGCGATCG 59.221 55.000 35.36 26.22 38.69 3.69
1119 1171 3.717294 CCACCCCTTCCCCAGTCG 61.717 72.222 0.00 0.00 0.00 4.18
1185 1237 2.850695 AGGAACGGAGGGAGTAGAAT 57.149 50.000 0.00 0.00 0.00 2.40
1191 1243 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1192 1244 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1193 1245 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1194 1246 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1221 1273 8.450964 CGTATGTGGTCATTTGTTAGAATCTTT 58.549 33.333 0.00 0.00 35.70 2.52
1222 1274 7.822334 TCGTATGTGGTCATTTGTTAGAATCTT 59.178 33.333 0.00 0.00 35.70 2.40
1223 1275 7.327975 TCGTATGTGGTCATTTGTTAGAATCT 58.672 34.615 0.00 0.00 35.70 2.40
1224 1276 7.534085 TCGTATGTGGTCATTTGTTAGAATC 57.466 36.000 0.00 0.00 35.70 2.52
1225 1277 7.414098 GCTTCGTATGTGGTCATTTGTTAGAAT 60.414 37.037 0.00 0.00 35.70 2.40
1226 1278 6.128391 GCTTCGTATGTGGTCATTTGTTAGAA 60.128 38.462 0.00 0.00 35.70 2.10
1227 1279 5.350365 GCTTCGTATGTGGTCATTTGTTAGA 59.650 40.000 0.00 0.00 35.70 2.10
1228 1280 5.121611 TGCTTCGTATGTGGTCATTTGTTAG 59.878 40.000 0.00 0.00 35.70 2.34
1229 1281 4.998033 TGCTTCGTATGTGGTCATTTGTTA 59.002 37.500 0.00 0.00 35.70 2.41
1230 1282 3.818210 TGCTTCGTATGTGGTCATTTGTT 59.182 39.130 0.00 0.00 35.70 2.83
1231 1283 3.407698 TGCTTCGTATGTGGTCATTTGT 58.592 40.909 0.00 0.00 35.70 2.83
1232 1284 4.418013 TTGCTTCGTATGTGGTCATTTG 57.582 40.909 0.00 0.00 35.70 2.32
1233 1285 5.219633 GTTTTGCTTCGTATGTGGTCATTT 58.780 37.500 0.00 0.00 35.70 2.32
1234 1286 4.277174 TGTTTTGCTTCGTATGTGGTCATT 59.723 37.500 0.00 0.00 35.70 2.57
1235 1287 3.818210 TGTTTTGCTTCGTATGTGGTCAT 59.182 39.130 0.00 0.00 38.00 3.06
1236 1288 3.206964 TGTTTTGCTTCGTATGTGGTCA 58.793 40.909 0.00 0.00 0.00 4.02
1237 1289 3.889196 TGTTTTGCTTCGTATGTGGTC 57.111 42.857 0.00 0.00 0.00 4.02
1238 1290 3.630312 ACTTGTTTTGCTTCGTATGTGGT 59.370 39.130 0.00 0.00 0.00 4.16
1239 1291 3.974401 CACTTGTTTTGCTTCGTATGTGG 59.026 43.478 0.00 0.00 0.00 4.17
1240 1292 4.843147 TCACTTGTTTTGCTTCGTATGTG 58.157 39.130 0.00 0.00 0.00 3.21
1241 1293 5.493133 TTCACTTGTTTTGCTTCGTATGT 57.507 34.783 0.00 0.00 0.00 2.29
1242 1294 5.914635 ACATTCACTTGTTTTGCTTCGTATG 59.085 36.000 0.00 0.00 0.00 2.39
1243 1295 6.072112 ACATTCACTTGTTTTGCTTCGTAT 57.928 33.333 0.00 0.00 0.00 3.06
1244 1296 5.493133 ACATTCACTTGTTTTGCTTCGTA 57.507 34.783 0.00 0.00 0.00 3.43
1245 1297 4.370364 ACATTCACTTGTTTTGCTTCGT 57.630 36.364 0.00 0.00 0.00 3.85
1246 1298 5.171337 GTGTACATTCACTTGTTTTGCTTCG 59.829 40.000 0.00 0.00 35.68 3.79
1247 1299 6.265577 AGTGTACATTCACTTGTTTTGCTTC 58.734 36.000 0.00 0.00 44.92 3.86
1248 1300 6.095440 AGAGTGTACATTCACTTGTTTTGCTT 59.905 34.615 19.24 0.00 46.81 3.91
1249 1301 5.590259 AGAGTGTACATTCACTTGTTTTGCT 59.410 36.000 19.24 0.00 46.81 3.91
1250 1302 5.821204 AGAGTGTACATTCACTTGTTTTGC 58.179 37.500 19.24 0.00 46.81 3.68
1251 1303 9.781834 TTTTAGAGTGTACATTCACTTGTTTTG 57.218 29.630 19.24 0.00 46.81 2.44
1322 1374 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1323 1375 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1324 1376 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1325 1377 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1326 1378 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1327 1379 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1328 1380 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1329 1381 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1330 1382 7.731688 ACATACTCCCTCCGTTCCTAAATATAA 59.268 37.037 0.00 0.00 0.00 0.98
1331 1383 7.243824 ACATACTCCCTCCGTTCCTAAATATA 58.756 38.462 0.00 0.00 0.00 0.86
1332 1384 6.082707 ACATACTCCCTCCGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
1333 1385 5.461327 ACATACTCCCTCCGTTCCTAAATA 58.539 41.667 0.00 0.00 0.00 1.40
1334 1386 4.296056 ACATACTCCCTCCGTTCCTAAAT 58.704 43.478 0.00 0.00 0.00 1.40
1335 1387 3.716431 ACATACTCCCTCCGTTCCTAAA 58.284 45.455 0.00 0.00 0.00 1.85
1336 1388 3.393426 ACATACTCCCTCCGTTCCTAA 57.607 47.619 0.00 0.00 0.00 2.69
1337 1389 3.393426 AACATACTCCCTCCGTTCCTA 57.607 47.619 0.00 0.00 0.00 2.94
1338 1390 2.249309 AACATACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
1339 1391 3.345508 AAAACATACTCCCTCCGTTCC 57.654 47.619 0.00 0.00 0.00 3.62
1367 1419 9.563898 CACTCACATATAACTACGTTAAACAGA 57.436 33.333 0.00 0.00 31.56 3.41
1368 1420 8.318876 GCACTCACATATAACTACGTTAAACAG 58.681 37.037 0.00 0.00 31.56 3.16
1369 1421 8.030692 AGCACTCACATATAACTACGTTAAACA 58.969 33.333 0.00 0.00 31.56 2.83
1370 1422 8.403606 AGCACTCACATATAACTACGTTAAAC 57.596 34.615 0.00 0.00 31.56 2.01
1374 1426 8.991243 TTTAAGCACTCACATATAACTACGTT 57.009 30.769 0.00 0.00 0.00 3.99
1380 1434 8.616076 AGCATTCTTTAAGCACTCACATATAAC 58.384 33.333 0.00 0.00 0.00 1.89
1411 1465 3.627395 AATTACCCACGCATCAAGAGA 57.373 42.857 0.00 0.00 0.00 3.10
1412 1466 3.440173 ACAAATTACCCACGCATCAAGAG 59.560 43.478 0.00 0.00 0.00 2.85
1413 1467 3.417101 ACAAATTACCCACGCATCAAGA 58.583 40.909 0.00 0.00 0.00 3.02
1414 1468 3.848272 ACAAATTACCCACGCATCAAG 57.152 42.857 0.00 0.00 0.00 3.02
1415 1469 3.440872 GGTACAAATTACCCACGCATCAA 59.559 43.478 0.00 0.00 0.00 2.57
1416 1470 3.011119 GGTACAAATTACCCACGCATCA 58.989 45.455 0.00 0.00 0.00 3.07
1417 1471 3.011119 TGGTACAAATTACCCACGCATC 58.989 45.455 0.00 0.00 36.79 3.91
1418 1472 3.013921 CTGGTACAAATTACCCACGCAT 58.986 45.455 0.00 0.00 38.70 4.73
1419 1473 2.224572 ACTGGTACAAATTACCCACGCA 60.225 45.455 0.00 0.00 38.70 5.24
1420 1474 2.429478 ACTGGTACAAATTACCCACGC 58.571 47.619 0.00 0.00 38.70 5.34
1421 1475 6.557291 TTTAACTGGTACAAATTACCCACG 57.443 37.500 0.00 0.00 38.70 4.94
1422 1476 9.012161 TGTATTTAACTGGTACAAATTACCCAC 57.988 33.333 0.00 0.00 38.70 4.61
1423 1477 9.756571 ATGTATTTAACTGGTACAAATTACCCA 57.243 29.630 0.00 0.00 38.70 4.51
1450 1504 7.572539 GCACCAATAGTTTGTAAGTAGGTGTTC 60.573 40.741 0.00 0.00 44.30 3.18
1606 1664 0.251341 ATGGCCTCTTTGCTTTCGGT 60.251 50.000 3.32 0.00 0.00 4.69
1616 1674 9.392259 GTAGTACAACTAATTAAATGGCCTCTT 57.608 33.333 3.32 0.00 31.62 2.85
1684 1745 2.029290 ACTCCCATCTGTTGACACGTAC 60.029 50.000 0.00 0.00 0.00 3.67
1692 1753 1.945387 CCGATCACTCCCATCTGTTG 58.055 55.000 0.00 0.00 0.00 3.33
1693 1754 0.179000 GCCGATCACTCCCATCTGTT 59.821 55.000 0.00 0.00 0.00 3.16
1730 1791 0.953471 CGCCGGTGGAGATGACAAAA 60.953 55.000 7.26 0.00 0.00 2.44
1803 1864 1.471684 GTAGATGTCGGTGAAGGACGT 59.528 52.381 0.00 0.00 37.22 4.34
1896 1957 3.309682 CACTTGCATGGTGTACTAATCGG 59.690 47.826 10.88 0.00 0.00 4.18
1901 1962 1.001520 ACGCACTTGCATGGTGTACTA 59.998 47.619 17.59 0.00 42.21 1.82
1903 1964 0.165944 GACGCACTTGCATGGTGTAC 59.834 55.000 17.59 8.82 42.21 2.90
1904 1965 0.250081 TGACGCACTTGCATGGTGTA 60.250 50.000 17.59 4.41 42.21 2.90
1905 1966 1.525765 TGACGCACTTGCATGGTGT 60.526 52.632 17.59 12.36 42.21 4.16
1908 1969 2.174107 CGTGACGCACTTGCATGG 59.826 61.111 4.44 0.00 42.21 3.66
1933 2004 2.831366 GCCGAGGACTGCATGCATG 61.831 63.158 22.97 22.70 0.00 4.06
1934 2005 2.515523 GCCGAGGACTGCATGCAT 60.516 61.111 22.97 11.62 0.00 3.96
1935 2006 3.549900 TTGCCGAGGACTGCATGCA 62.550 57.895 21.29 21.29 36.27 3.96
2278 2357 1.610673 GAGTGGGAGGAGGTGCTCA 60.611 63.158 0.63 0.00 31.08 4.26
2320 2399 2.281762 GCAACGTTAGACGATGGTGATC 59.718 50.000 0.00 0.00 46.05 2.92
2321 2400 2.268298 GCAACGTTAGACGATGGTGAT 58.732 47.619 0.00 0.00 46.05 3.06
2322 2401 1.705256 GCAACGTTAGACGATGGTGA 58.295 50.000 0.00 0.00 46.05 4.02
2323 2402 0.365523 CGCAACGTTAGACGATGGTG 59.634 55.000 0.00 1.60 46.05 4.17
2324 2403 1.349259 GCGCAACGTTAGACGATGGT 61.349 55.000 18.21 0.00 46.05 3.55
2325 2404 1.343821 GCGCAACGTTAGACGATGG 59.656 57.895 18.21 2.00 46.05 3.51
2326 2405 0.645355 ATGCGCAACGTTAGACGATG 59.355 50.000 17.11 6.91 46.05 3.84
2327 2406 0.645355 CATGCGCAACGTTAGACGAT 59.355 50.000 17.11 8.40 46.05 3.73
2328 2407 1.951181 GCATGCGCAACGTTAGACGA 61.951 55.000 17.11 6.84 40.45 4.20
2329 2408 1.577616 GCATGCGCAACGTTAGACG 60.578 57.895 17.11 6.83 42.50 4.18
2330 2409 4.342964 GCATGCGCAACGTTAGAC 57.657 55.556 17.11 0.00 38.36 2.59
2358 2437 4.864334 CCCATGGTCAGCCGAGCC 62.864 72.222 11.73 0.00 38.96 4.70
2369 2448 3.386402 ACACAAAGTGTTTTACCCCATGG 59.614 43.478 4.14 4.14 45.08 3.66
2375 2454 5.716094 AGAAACCACACAAAGTGTTTTACC 58.284 37.500 0.00 0.00 45.08 2.85
2376 2455 7.646446 AAAGAAACCACACAAAGTGTTTTAC 57.354 32.000 0.00 0.00 45.08 2.01
2377 2456 7.115095 CGAAAAGAAACCACACAAAGTGTTTTA 59.885 33.333 0.00 0.00 45.08 1.52
2378 2457 6.074034 CGAAAAGAAACCACACAAAGTGTTTT 60.074 34.615 0.00 0.18 45.08 2.43
2379 2458 5.404066 CGAAAAGAAACCACACAAAGTGTTT 59.596 36.000 0.00 0.00 45.08 2.83
2388 2511 1.462791 CACGCGAAAAGAAACCACAC 58.537 50.000 15.93 0.00 0.00 3.82
2393 2516 1.268778 GCCTGCACGCGAAAAGAAAC 61.269 55.000 15.93 0.00 0.00 2.78
2394 2517 1.008995 GCCTGCACGCGAAAAGAAA 60.009 52.632 15.93 0.00 0.00 2.52
2396 2519 3.353836 GGCCTGCACGCGAAAAGA 61.354 61.111 15.93 0.00 0.00 2.52
2397 2520 4.404654 GGGCCTGCACGCGAAAAG 62.405 66.667 15.93 6.40 0.00 2.27
2563 6552 3.081409 AAGCCCTGGCCGTCGTAT 61.081 61.111 4.13 0.00 43.17 3.06
2715 6704 4.838152 CCGTCGGCCATGGACAGG 62.838 72.222 20.22 13.99 34.04 4.00
2774 6784 0.441533 GCGACATGCAGAAGACACTG 59.558 55.000 0.00 0.00 45.45 3.66
2821 6839 8.777721 CGTCGTTTGTTAATTATTTCGCATTAA 58.222 29.630 0.00 0.00 0.00 1.40
2823 6841 6.797995 ACGTCGTTTGTTAATTATTTCGCATT 59.202 30.769 0.00 0.00 0.00 3.56
2847 6865 3.848191 CGTGCACATACACTTGGAACAAC 60.848 47.826 18.64 0.00 37.91 3.32
2848 6866 2.289274 CGTGCACATACACTTGGAACAA 59.711 45.455 18.64 0.00 37.91 2.83
2865 6887 4.028648 GTCGTTGTATAAAAACATGCGTGC 59.971 41.667 5.64 0.00 33.09 5.34
2877 6899 5.813672 GCTATTTGTGGGAGTCGTTGTATAA 59.186 40.000 0.00 0.00 0.00 0.98
2905 6929 2.028930 CGAATGAGACCTAGCCATACCC 60.029 54.545 0.00 0.00 0.00 3.69
2906 6930 2.891580 TCGAATGAGACCTAGCCATACC 59.108 50.000 0.00 0.00 0.00 2.73
2907 6931 3.570550 AGTCGAATGAGACCTAGCCATAC 59.429 47.826 0.00 0.00 41.83 2.39
2908 6932 3.833732 AGTCGAATGAGACCTAGCCATA 58.166 45.455 0.00 0.00 41.83 2.74
2909 6933 2.672098 AGTCGAATGAGACCTAGCCAT 58.328 47.619 0.00 0.00 41.83 4.40
2910 6934 2.145397 AGTCGAATGAGACCTAGCCA 57.855 50.000 0.00 0.00 41.83 4.75
2911 6935 4.650754 TTTAGTCGAATGAGACCTAGCC 57.349 45.455 0.00 0.00 41.83 3.93
2912 6936 7.541122 AAATTTTAGTCGAATGAGACCTAGC 57.459 36.000 0.00 0.00 41.83 3.42
2948 6972 9.539825 CTCTCTTGCATAATATGTCACTTAACT 57.460 33.333 1.92 0.00 0.00 2.24
2949 6973 9.534565 TCTCTCTTGCATAATATGTCACTTAAC 57.465 33.333 1.92 0.00 0.00 2.01
2952 6976 9.453572 TTTTCTCTCTTGCATAATATGTCACTT 57.546 29.630 1.92 0.00 0.00 3.16
2953 6977 9.453572 TTTTTCTCTCTTGCATAATATGTCACT 57.546 29.630 1.92 0.00 0.00 3.41
2954 6978 9.713740 CTTTTTCTCTCTTGCATAATATGTCAC 57.286 33.333 1.92 0.00 0.00 3.67
2955 6979 9.671279 TCTTTTTCTCTCTTGCATAATATGTCA 57.329 29.630 1.92 0.00 0.00 3.58
2961 6985 9.071276 TCACTTTCTTTTTCTCTCTTGCATAAT 57.929 29.630 0.00 0.00 0.00 1.28
2962 6986 8.450578 TCACTTTCTTTTTCTCTCTTGCATAA 57.549 30.769 0.00 0.00 0.00 1.90
2963 6987 8.627208 ATCACTTTCTTTTTCTCTCTTGCATA 57.373 30.769 0.00 0.00 0.00 3.14
2964 6988 6.949352 TCACTTTCTTTTTCTCTCTTGCAT 57.051 33.333 0.00 0.00 0.00 3.96
2965 6989 6.949352 ATCACTTTCTTTTTCTCTCTTGCA 57.051 33.333 0.00 0.00 0.00 4.08
2966 6990 8.640091 AAAATCACTTTCTTTTTCTCTCTTGC 57.360 30.769 0.00 0.00 0.00 4.01
2994 7018 9.679661 TGAAATCTTACATTAAGACCTATGCAA 57.320 29.630 0.00 0.00 46.58 4.08
2995 7019 9.851686 ATGAAATCTTACATTAAGACCTATGCA 57.148 29.630 0.00 0.00 46.58 3.96
3013 7037 9.467796 TCAGTCGATACTATATCCATGAAATCT 57.532 33.333 0.00 0.00 33.48 2.40
3014 7038 9.729023 CTCAGTCGATACTATATCCATGAAATC 57.271 37.037 0.00 0.00 33.48 2.17
3015 7039 9.467796 TCTCAGTCGATACTATATCCATGAAAT 57.532 33.333 0.00 0.00 33.48 2.17
3016 7040 8.731605 GTCTCAGTCGATACTATATCCATGAAA 58.268 37.037 0.00 0.00 33.48 2.69
3017 7041 8.103935 AGTCTCAGTCGATACTATATCCATGAA 58.896 37.037 0.00 0.00 33.48 2.57
3018 7042 7.625469 AGTCTCAGTCGATACTATATCCATGA 58.375 38.462 0.00 0.00 33.48 3.07
3019 7043 7.857734 AGTCTCAGTCGATACTATATCCATG 57.142 40.000 0.00 0.00 33.48 3.66
3020 7044 9.961264 TTAAGTCTCAGTCGATACTATATCCAT 57.039 33.333 0.00 0.00 33.48 3.41
3021 7045 9.217278 GTTAAGTCTCAGTCGATACTATATCCA 57.783 37.037 0.00 0.00 33.48 3.41
3022 7046 8.382130 CGTTAAGTCTCAGTCGATACTATATCC 58.618 40.741 0.00 0.00 33.48 2.59
3023 7047 9.138062 TCGTTAAGTCTCAGTCGATACTATATC 57.862 37.037 0.00 0.00 33.48 1.63
3024 7048 9.486497 TTCGTTAAGTCTCAGTCGATACTATAT 57.514 33.333 0.00 0.00 33.48 0.86
3025 7049 8.877808 TTCGTTAAGTCTCAGTCGATACTATA 57.122 34.615 0.00 0.00 33.48 1.31
3026 7050 7.495279 ACTTCGTTAAGTCTCAGTCGATACTAT 59.505 37.037 0.00 0.00 42.42 2.12
3027 7051 6.815641 ACTTCGTTAAGTCTCAGTCGATACTA 59.184 38.462 0.00 0.00 42.42 1.82
3028 7052 5.642919 ACTTCGTTAAGTCTCAGTCGATACT 59.357 40.000 0.00 0.00 42.42 2.12
3029 7053 5.867166 ACTTCGTTAAGTCTCAGTCGATAC 58.133 41.667 0.00 0.00 42.42 2.24
3042 7066 8.640291 GTCTTAATTGACTCAGACTTCGTTAAG 58.360 37.037 0.00 0.00 34.07 1.85
3043 7067 8.358148 AGTCTTAATTGACTCAGACTTCGTTAA 58.642 33.333 0.00 0.00 42.79 2.01
3044 7068 7.883217 AGTCTTAATTGACTCAGACTTCGTTA 58.117 34.615 0.00 0.00 42.79 3.18
3045 7069 6.750148 AGTCTTAATTGACTCAGACTTCGTT 58.250 36.000 0.00 0.00 42.79 3.85
3046 7070 6.334102 AGTCTTAATTGACTCAGACTTCGT 57.666 37.500 0.00 0.00 42.79 3.85
3050 7074 7.233389 TGCTAAGTCTTAATTGACTCAGACT 57.767 36.000 1.16 0.00 46.47 3.24
3051 7075 7.815068 TCTTGCTAAGTCTTAATTGACTCAGAC 59.185 37.037 1.16 0.00 45.49 3.51
3052 7076 7.815068 GTCTTGCTAAGTCTTAATTGACTCAGA 59.185 37.037 1.16 0.00 45.49 3.27
3053 7077 7.816995 AGTCTTGCTAAGTCTTAATTGACTCAG 59.183 37.037 0.00 0.00 45.49 3.35
3054 7078 7.600375 CAGTCTTGCTAAGTCTTAATTGACTCA 59.400 37.037 11.22 0.00 45.49 3.41
3055 7079 7.815068 TCAGTCTTGCTAAGTCTTAATTGACTC 59.185 37.037 11.22 0.00 45.49 3.36
3057 7081 7.891183 TCAGTCTTGCTAAGTCTTAATTGAC 57.109 36.000 0.00 1.43 37.23 3.18
3060 7084 9.103861 GCTATTCAGTCTTGCTAAGTCTTAATT 57.896 33.333 0.00 0.00 28.48 1.40
3061 7085 8.260818 TGCTATTCAGTCTTGCTAAGTCTTAAT 58.739 33.333 0.00 0.00 29.91 1.40
3062 7086 7.611770 TGCTATTCAGTCTTGCTAAGTCTTAA 58.388 34.615 0.00 0.00 0.00 1.85
3063 7087 7.170393 TGCTATTCAGTCTTGCTAAGTCTTA 57.830 36.000 0.00 0.00 0.00 2.10
3064 7088 6.042638 TGCTATTCAGTCTTGCTAAGTCTT 57.957 37.500 0.00 0.00 0.00 3.01
3065 7089 5.667539 TGCTATTCAGTCTTGCTAAGTCT 57.332 39.130 0.00 0.00 0.00 3.24
3066 7090 6.370166 AGTTTGCTATTCAGTCTTGCTAAGTC 59.630 38.462 0.00 0.00 0.00 3.01
3067 7091 6.234177 AGTTTGCTATTCAGTCTTGCTAAGT 58.766 36.000 0.00 0.00 0.00 2.24
3068 7092 6.734104 AGTTTGCTATTCAGTCTTGCTAAG 57.266 37.500 0.00 0.00 0.00 2.18
3069 7093 7.386851 AGTAGTTTGCTATTCAGTCTTGCTAA 58.613 34.615 0.00 0.00 0.00 3.09
3070 7094 6.936279 AGTAGTTTGCTATTCAGTCTTGCTA 58.064 36.000 0.00 0.00 0.00 3.49
3071 7095 5.799213 AGTAGTTTGCTATTCAGTCTTGCT 58.201 37.500 0.00 0.00 0.00 3.91
3072 7096 7.036220 TCTAGTAGTTTGCTATTCAGTCTTGC 58.964 38.462 0.00 0.00 0.00 4.01
3073 7097 8.988064 TTCTAGTAGTTTGCTATTCAGTCTTG 57.012 34.615 0.00 0.00 0.00 3.02
3074 7098 9.593134 CATTCTAGTAGTTTGCTATTCAGTCTT 57.407 33.333 0.00 0.00 0.00 3.01
3075 7099 8.972127 TCATTCTAGTAGTTTGCTATTCAGTCT 58.028 33.333 0.00 0.00 0.00 3.24
3076 7100 9.757227 ATCATTCTAGTAGTTTGCTATTCAGTC 57.243 33.333 0.00 0.00 0.00 3.51
3082 7106 9.125026 CCCAAAATCATTCTAGTAGTTTGCTAT 57.875 33.333 0.00 0.00 0.00 2.97
3083 7107 8.325787 TCCCAAAATCATTCTAGTAGTTTGCTA 58.674 33.333 0.00 0.00 0.00 3.49
3084 7108 7.175104 TCCCAAAATCATTCTAGTAGTTTGCT 58.825 34.615 0.00 0.00 0.00 3.91
3085 7109 7.391148 TCCCAAAATCATTCTAGTAGTTTGC 57.609 36.000 0.00 0.00 0.00 3.68
3088 7112 8.971073 CCAAATCCCAAAATCATTCTAGTAGTT 58.029 33.333 0.00 0.00 0.00 2.24
3089 7113 7.068716 GCCAAATCCCAAAATCATTCTAGTAGT 59.931 37.037 0.00 0.00 0.00 2.73
3090 7114 7.428826 GCCAAATCCCAAAATCATTCTAGTAG 58.571 38.462 0.00 0.00 0.00 2.57
3112 7136 1.197264 GCACGGTTTTGTTATACGCCA 59.803 47.619 0.00 0.00 0.00 5.69
3120 7144 3.238108 TGTTTCATGCACGGTTTTGTT 57.762 38.095 0.00 0.00 0.00 2.83
3121 7145 2.949451 TGTTTCATGCACGGTTTTGT 57.051 40.000 0.00 0.00 0.00 2.83
3122 7146 4.545610 AGTATGTTTCATGCACGGTTTTG 58.454 39.130 0.00 0.00 0.00 2.44
3127 7186 1.327460 CCGAGTATGTTTCATGCACGG 59.673 52.381 17.39 17.39 32.88 4.94
3132 7191 2.930040 ACTTCGCCGAGTATGTTTCATG 59.070 45.455 0.00 0.00 0.00 3.07
3145 7204 0.730840 GGTTAATTGGGACTTCGCCG 59.269 55.000 0.00 0.00 0.00 6.46
3153 7212 2.841881 AGTAAGCCGAGGTTAATTGGGA 59.158 45.455 0.00 0.00 0.00 4.37
3173 7372 4.715527 GGGTACAATACTCGGCCTATAG 57.284 50.000 0.00 0.00 0.00 1.31
3182 7381 0.828677 ACTGGCCGGGTACAATACTC 59.171 55.000 18.00 0.00 0.00 2.59
3186 7385 0.322187 GTGAACTGGCCGGGTACAAT 60.322 55.000 18.00 0.00 0.00 2.71
3193 7392 2.530958 ATAACCCGTGAACTGGCCGG 62.531 60.000 11.02 11.02 41.37 6.13
3194 7393 1.078708 ATAACCCGTGAACTGGCCG 60.079 57.895 0.00 0.00 0.00 6.13
3195 7394 1.654023 GCATAACCCGTGAACTGGCC 61.654 60.000 0.00 0.00 0.00 5.36
3196 7395 1.654023 GGCATAACCCGTGAACTGGC 61.654 60.000 0.00 0.00 0.00 4.85
3197 7396 0.322098 TGGCATAACCCGTGAACTGG 60.322 55.000 0.00 0.00 37.83 4.00
3198 7397 1.401552 CATGGCATAACCCGTGAACTG 59.598 52.381 0.00 0.00 43.20 3.16
3199 7398 1.004277 ACATGGCATAACCCGTGAACT 59.996 47.619 0.00 0.00 43.20 3.01
3200 7399 1.459450 ACATGGCATAACCCGTGAAC 58.541 50.000 0.00 0.00 43.20 3.18
3201 7400 2.634600 GTACATGGCATAACCCGTGAA 58.365 47.619 0.00 0.00 43.20 3.18
3202 7401 1.471851 CGTACATGGCATAACCCGTGA 60.472 52.381 0.00 0.00 43.20 4.35
3203 7402 0.934496 CGTACATGGCATAACCCGTG 59.066 55.000 0.00 0.00 45.45 4.94
3204 7403 0.812412 GCGTACATGGCATAACCCGT 60.812 55.000 0.00 0.00 37.83 5.28
3205 7404 1.503818 GGCGTACATGGCATAACCCG 61.504 60.000 0.00 1.61 37.83 5.28
3206 7405 0.464735 TGGCGTACATGGCATAACCC 60.465 55.000 0.00 6.25 39.79 4.11
3207 7406 1.333619 CTTGGCGTACATGGCATAACC 59.666 52.381 0.00 0.00 44.53 2.85
3208 7407 2.285083 TCTTGGCGTACATGGCATAAC 58.715 47.619 0.00 0.48 44.53 1.89
3209 7408 2.700722 TCTTGGCGTACATGGCATAA 57.299 45.000 0.00 0.00 44.53 1.90
3210 7409 2.928801 ATCTTGGCGTACATGGCATA 57.071 45.000 0.00 0.00 44.53 3.14
3211 7410 1.949525 GAATCTTGGCGTACATGGCAT 59.050 47.619 0.00 0.00 44.53 4.40
3212 7411 1.339535 TGAATCTTGGCGTACATGGCA 60.340 47.619 0.00 0.00 43.36 4.92
3213 7412 1.331756 CTGAATCTTGGCGTACATGGC 59.668 52.381 0.00 0.00 0.00 4.40
3214 7413 2.632377 ACTGAATCTTGGCGTACATGG 58.368 47.619 0.00 0.00 0.00 3.66
3215 7414 3.684305 TGAACTGAATCTTGGCGTACATG 59.316 43.478 0.00 0.00 0.00 3.21
3216 7415 3.684788 GTGAACTGAATCTTGGCGTACAT 59.315 43.478 0.00 0.00 0.00 2.29
3217 7416 3.064207 GTGAACTGAATCTTGGCGTACA 58.936 45.455 0.00 0.00 0.00 2.90
3218 7417 2.092211 CGTGAACTGAATCTTGGCGTAC 59.908 50.000 0.00 0.00 0.00 3.67
3219 7418 2.333926 CGTGAACTGAATCTTGGCGTA 58.666 47.619 0.00 0.00 0.00 4.42
3220 7419 1.148310 CGTGAACTGAATCTTGGCGT 58.852 50.000 0.00 0.00 0.00 5.68
3221 7420 0.443869 CCGTGAACTGAATCTTGGCG 59.556 55.000 0.00 0.00 0.00 5.69
3222 7421 0.804989 CCCGTGAACTGAATCTTGGC 59.195 55.000 0.00 0.00 0.00 4.52
3223 7422 2.185004 ACCCGTGAACTGAATCTTGG 57.815 50.000 0.00 0.00 0.00 3.61
3224 7423 3.926616 AGTACCCGTGAACTGAATCTTG 58.073 45.455 0.00 0.00 0.00 3.02
3225 7424 3.576982 TGAGTACCCGTGAACTGAATCTT 59.423 43.478 0.00 0.00 0.00 2.40
3226 7425 3.162666 TGAGTACCCGTGAACTGAATCT 58.837 45.455 0.00 0.00 0.00 2.40
3227 7426 3.587797 TGAGTACCCGTGAACTGAATC 57.412 47.619 0.00 0.00 0.00 2.52
3228 7427 3.323979 AGTTGAGTACCCGTGAACTGAAT 59.676 43.478 0.00 0.00 0.00 2.57
3229 7428 2.696707 AGTTGAGTACCCGTGAACTGAA 59.303 45.455 0.00 0.00 0.00 3.02
3256 7455 8.129211 GCAGTTATTTTGAACTCGGCTTATATT 58.871 33.333 0.00 0.00 37.57 1.28
3264 7463 4.201628 CGAGAGCAGTTATTTTGAACTCGG 60.202 45.833 0.00 0.00 37.57 4.63
3272 7471 2.380084 TCGCCGAGAGCAGTTATTTT 57.620 45.000 0.00 0.00 44.04 1.82
3273 7472 2.380084 TTCGCCGAGAGCAGTTATTT 57.620 45.000 0.00 0.00 44.04 1.40
3274 7473 2.380084 TTTCGCCGAGAGCAGTTATT 57.620 45.000 0.00 0.00 44.04 1.40
3275 7474 2.604046 ATTTCGCCGAGAGCAGTTAT 57.396 45.000 0.00 0.00 44.04 1.89
3276 7475 3.513680 TTATTTCGCCGAGAGCAGTTA 57.486 42.857 0.00 0.00 44.04 2.24
3277 7476 2.380084 TTATTTCGCCGAGAGCAGTT 57.620 45.000 0.00 0.00 44.04 3.16
3278 7477 2.271800 CTTTATTTCGCCGAGAGCAGT 58.728 47.619 0.00 0.00 44.04 4.40
3279 7478 1.004504 GCTTTATTTCGCCGAGAGCAG 60.005 52.381 0.00 0.00 44.04 4.24
3280 7479 1.006832 GCTTTATTTCGCCGAGAGCA 58.993 50.000 0.00 0.00 44.04 4.26
3281 7480 1.291132 AGCTTTATTTCGCCGAGAGC 58.709 50.000 0.00 0.00 38.52 4.09
3282 7481 3.444916 TGTAGCTTTATTTCGCCGAGAG 58.555 45.455 0.00 0.00 0.00 3.20
3283 7482 3.513680 TGTAGCTTTATTTCGCCGAGA 57.486 42.857 0.00 0.00 0.00 4.04
3284 7483 3.802139 TCATGTAGCTTTATTTCGCCGAG 59.198 43.478 0.00 0.00 0.00 4.63
3285 7484 3.554324 GTCATGTAGCTTTATTTCGCCGA 59.446 43.478 0.00 0.00 0.00 5.54
3286 7485 3.601586 CGTCATGTAGCTTTATTTCGCCG 60.602 47.826 0.00 0.00 0.00 6.46
3287 7486 3.554324 TCGTCATGTAGCTTTATTTCGCC 59.446 43.478 0.00 0.00 0.00 5.54
3290 7489 5.612709 GCCGATCGTCATGTAGCTTTATTTC 60.613 44.000 15.09 0.00 0.00 2.17
3295 7494 1.571919 GCCGATCGTCATGTAGCTTT 58.428 50.000 15.09 0.00 0.00 3.51
3306 7505 2.125310 TTTGCATCGGCCGATCGT 60.125 55.556 37.10 16.69 40.13 3.73
3309 7508 3.202001 CCGTTTGCATCGGCCGAT 61.202 61.111 34.60 34.60 41.48 4.18
3327 7526 3.509967 CCCTTCACAATCCCAAGTTTACC 59.490 47.826 0.00 0.00 0.00 2.85
3328 7527 4.149598 ACCCTTCACAATCCCAAGTTTAC 58.850 43.478 0.00 0.00 0.00 2.01
3331 7530 3.139397 TGTACCCTTCACAATCCCAAGTT 59.861 43.478 0.00 0.00 0.00 2.66
3367 7566 6.935771 AGCATCATTTTGCCATTTTAAAGTGA 59.064 30.769 11.94 0.00 43.83 3.41
3400 7599 3.808728 CCTCAATTTTGCGATCCCTCTA 58.191 45.455 0.00 0.00 0.00 2.43
3401 7600 2.648059 CCTCAATTTTGCGATCCCTCT 58.352 47.619 0.00 0.00 0.00 3.69
3402 7601 1.066152 GCCTCAATTTTGCGATCCCTC 59.934 52.381 0.00 0.00 0.00 4.30
3403 7602 1.106285 GCCTCAATTTTGCGATCCCT 58.894 50.000 0.00 0.00 0.00 4.20
3404 7603 0.817013 TGCCTCAATTTTGCGATCCC 59.183 50.000 0.00 0.00 0.00 3.85
3405 7604 2.735823 GATGCCTCAATTTTGCGATCC 58.264 47.619 0.00 0.00 0.00 3.36
3410 7609 3.836949 TCTTTCGATGCCTCAATTTTGC 58.163 40.909 0.00 0.00 0.00 3.68
3412 7611 3.426695 CGCTCTTTCGATGCCTCAATTTT 60.427 43.478 0.00 0.00 0.00 1.82
3428 7627 5.635700 GTCTGAACTAGTTTTCATCGCTCTT 59.364 40.000 10.02 0.00 34.96 2.85
3430 7629 4.923871 TGTCTGAACTAGTTTTCATCGCTC 59.076 41.667 10.02 0.00 34.96 5.03
3446 7645 7.154656 TCTTTTTCTCATCGATTCTGTCTGAA 58.845 34.615 0.00 0.00 39.24 3.02
3448 7647 6.589523 ACTCTTTTTCTCATCGATTCTGTCTG 59.410 38.462 0.00 0.00 0.00 3.51
3457 7656 8.975410 TCGTATTTTACTCTTTTTCTCATCGA 57.025 30.769 0.00 0.00 0.00 3.59
3567 7785 1.338973 AGAAACTCCGCTTACACGTGA 59.661 47.619 25.01 2.68 0.00 4.35
3578 7796 2.094762 ACCCGATGAAAGAAACTCCG 57.905 50.000 0.00 0.00 0.00 4.63
3640 7860 1.015109 GGCTTTCGGCTTACCTTAGC 58.985 55.000 0.00 0.00 41.46 3.09
3644 7864 2.436115 GCGGCTTTCGGCTTACCT 60.436 61.111 0.00 0.00 41.46 3.08
3661 7881 0.320073 TAAGCCGAACGGTTGTCTGG 60.320 55.000 14.63 0.00 37.65 3.86
3663 7883 2.737679 GCTATAAGCCGAACGGTTGTCT 60.738 50.000 14.63 0.53 34.48 3.41
3665 7885 1.648504 GCTATAAGCCGAACGGTTGT 58.351 50.000 14.63 8.52 34.48 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.