Multiple sequence alignment - TraesCS2A01G364100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G364100 chr2A 100.000 6457 0 0 1 6457 608001543 607995087 0.000000e+00 11924.0
1 TraesCS2A01G364100 chr2B 93.257 2966 138 20 3369 6316 546204050 546201129 0.000000e+00 4313.0
2 TraesCS2A01G364100 chr2B 88.446 1783 114 38 465 2208 546207480 546205751 0.000000e+00 2067.0
3 TraesCS2A01G364100 chr2B 88.241 1063 69 32 2213 3250 546205582 546204551 0.000000e+00 1219.0
4 TraesCS2A01G364100 chr2B 82.338 402 67 4 5918 6316 563692428 563692028 4.790000e-91 346.0
5 TraesCS2A01G364100 chr2B 79.572 421 78 6 5902 6316 550734191 550733773 1.760000e-75 294.0
6 TraesCS2A01G364100 chr2B 92.090 177 12 2 34 209 546207945 546207770 1.390000e-61 248.0
7 TraesCS2A01G364100 chr2B 95.238 105 4 1 3261 3364 546204229 546204125 1.440000e-36 165.0
8 TraesCS2A01G364100 chr2B 85.915 142 13 4 307 447 546207767 546207632 1.880000e-30 145.0
9 TraesCS2A01G364100 chr2B 80.690 145 22 3 6318 6457 356864816 356864959 2.460000e-19 108.0
10 TraesCS2A01G364100 chr2D 96.251 2561 75 8 3256 5805 467243157 467240607 0.000000e+00 4178.0
11 TraesCS2A01G364100 chr2D 92.303 1767 91 18 1494 3250 467245216 467243485 0.000000e+00 2468.0
12 TraesCS2A01G364100 chr2D 85.907 518 30 13 770 1270 467245912 467245421 4.470000e-141 512.0
13 TraesCS2A01G364100 chr2D 83.453 417 64 5 5903 6316 480589014 480588600 3.650000e-102 383.0
14 TraesCS2A01G364100 chr2D 81.333 150 21 3 6313 6456 296893369 296893517 1.470000e-21 115.0
15 TraesCS2A01G364100 chr6D 78.606 1837 356 28 3595 5408 292966688 292964866 0.000000e+00 1181.0
16 TraesCS2A01G364100 chr6D 82.857 420 67 5 5901 6316 388266098 388266516 7.910000e-99 372.0
17 TraesCS2A01G364100 chr6D 84.000 150 18 3 6313 6457 282472931 282473079 8.730000e-29 139.0
18 TraesCS2A01G364100 chr6D 80.000 150 24 2 6313 6457 226272712 226272860 8.850000e-19 106.0
19 TraesCS2A01G364100 chr6A 78.093 1835 369 24 3595 5408 428071625 428073447 0.000000e+00 1131.0
20 TraesCS2A01G364100 chr1D 82.619 420 66 7 5900 6314 484104206 484104623 1.320000e-96 364.0
21 TraesCS2A01G364100 chr4A 84.553 369 47 8 5956 6316 571028865 571029231 2.210000e-94 357.0
22 TraesCS2A01G364100 chr3D 80.986 426 67 12 5900 6316 579263651 579263231 6.240000e-85 326.0
23 TraesCS2A01G364100 chr3D 82.402 358 58 5 5961 6315 539133882 539134237 2.260000e-79 307.0
24 TraesCS2A01G364100 chr7D 86.395 147 14 2 6316 6457 311314213 311314068 8.670000e-34 156.0
25 TraesCS2A01G364100 chr7D 85.714 147 15 4 6316 6457 424648391 424648246 4.030000e-32 150.0
26 TraesCS2A01G364100 chr5A 88.636 132 9 2 6331 6457 216890448 216890318 8.670000e-34 156.0
27 TraesCS2A01G364100 chr5A 83.673 147 18 2 6316 6457 295648926 295648781 4.060000e-27 134.0
28 TraesCS2A01G364100 chr3A 78.912 147 25 2 6316 6457 374148268 374148123 1.920000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G364100 chr2A 607995087 608001543 6456 True 11924.0 11924 100.000000 1 6457 1 chr2A.!!$R1 6456
1 TraesCS2A01G364100 chr2B 546201129 546207945 6816 True 1359.5 4313 90.531167 34 6316 6 chr2B.!!$R3 6282
2 TraesCS2A01G364100 chr2D 467240607 467245912 5305 True 2386.0 4178 91.487000 770 5805 3 chr2D.!!$R2 5035
3 TraesCS2A01G364100 chr6D 292964866 292966688 1822 True 1181.0 1181 78.606000 3595 5408 1 chr6D.!!$R1 1813
4 TraesCS2A01G364100 chr6A 428071625 428073447 1822 False 1131.0 1131 78.093000 3595 5408 1 chr6A.!!$F1 1813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.105039 CTGGTTCGCTAGTCCCCATC 59.895 60.000 0.00 0.00 0.00 3.51 F
782 942 0.108567 GCACGTTTCTCCTCTCCTCC 60.109 60.000 0.00 0.00 0.00 4.30 F
1539 1757 0.249238 CCTGTAGACTGCAGCCGATC 60.249 60.000 15.27 3.45 32.93 3.69 F
2574 2965 0.184211 AAAGTTTGGTGGTAGGCGGT 59.816 50.000 0.00 0.00 0.00 5.68 F
3865 4710 1.021202 CAAGTTCCAAACCGTCAGCA 58.979 50.000 0.00 0.00 0.00 4.41 F
4469 5314 1.204704 CTGTCTGACGGGCAAGATACA 59.795 52.381 8.80 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2407 0.985549 GCGCACAACAAAACGTCAAA 59.014 45.000 0.30 0.00 0.00 2.69 R
2296 2685 0.108329 CTGCGGTCGGTCCAACTTAT 60.108 55.000 0.00 0.00 35.57 1.73 R
3058 3490 2.092323 GTTTCCGCTTAAGCTGGGAAT 58.908 47.619 27.26 0.00 39.26 3.01 R
4049 4894 0.615331 TAGCACTGGGAGCTTTCAGG 59.385 55.000 17.67 10.08 43.25 3.86 R
5030 5878 0.527817 GTATGCGGTTCCTCTCACGG 60.528 60.000 0.00 0.00 0.00 4.94 R
6407 7265 0.036388 GACCATGCTGTTTCCGGAGA 60.036 55.000 3.34 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 7.820648 ACATTTTGTTAGTCAGATTGATGGTC 58.179 34.615 0.00 0.00 0.00 4.02
117 118 5.183713 TCAAAGTTGGACCTTGCAATATGAG 59.816 40.000 0.00 0.00 28.47 2.90
174 175 6.980051 AAATACGAAGTTGCCTAGTTAAGG 57.020 37.500 0.00 0.00 44.97 2.69
175 176 5.672421 ATACGAAGTTGCCTAGTTAAGGT 57.328 39.130 0.00 0.00 44.11 3.50
176 177 3.922910 ACGAAGTTGCCTAGTTAAGGTC 58.077 45.455 0.00 0.00 44.11 3.85
178 179 4.321824 ACGAAGTTGCCTAGTTAAGGTCTC 60.322 45.833 0.00 0.00 44.11 3.36
187 188 3.957591 AGTTAAGGTCTCCTTCGGTTC 57.042 47.619 4.21 0.00 43.57 3.62
191 192 1.915141 AGGTCTCCTTCGGTTCGTAA 58.085 50.000 0.00 0.00 0.00 3.18
247 248 8.324163 TCTTGTACAGAAAATTCCTTTAGAGC 57.676 34.615 0.00 0.00 0.00 4.09
248 249 7.390718 TCTTGTACAGAAAATTCCTTTAGAGCC 59.609 37.037 0.00 0.00 0.00 4.70
249 250 6.779860 TGTACAGAAAATTCCTTTAGAGCCT 58.220 36.000 0.00 0.00 0.00 4.58
250 251 7.231467 TGTACAGAAAATTCCTTTAGAGCCTT 58.769 34.615 0.00 0.00 0.00 4.35
251 252 8.380099 TGTACAGAAAATTCCTTTAGAGCCTTA 58.620 33.333 0.00 0.00 0.00 2.69
252 253 9.397280 GTACAGAAAATTCCTTTAGAGCCTTAT 57.603 33.333 0.00 0.00 0.00 1.73
254 255 9.620259 ACAGAAAATTCCTTTAGAGCCTTATAG 57.380 33.333 0.00 0.00 0.00 1.31
255 256 9.620259 CAGAAAATTCCTTTAGAGCCTTATAGT 57.380 33.333 0.00 0.00 0.00 2.12
259 260 9.755122 AAATTCCTTTAGAGCCTTATAGTTTGT 57.245 29.630 0.00 0.00 0.00 2.83
279 280 8.971073 AGTTTGTAAAATATTCCTGATTCCTGG 58.029 33.333 0.00 0.00 0.00 4.45
280 281 8.749354 GTTTGTAAAATATTCCTGATTCCTGGT 58.251 33.333 0.00 0.00 33.58 4.00
281 282 8.893563 TTGTAAAATATTCCTGATTCCTGGTT 57.106 30.769 0.00 0.00 33.58 3.67
282 283 8.519799 TGTAAAATATTCCTGATTCCTGGTTC 57.480 34.615 0.00 0.00 33.58 3.62
283 284 6.699575 AAAATATTCCTGATTCCTGGTTCG 57.300 37.500 0.00 0.00 33.58 3.95
284 285 2.044123 ATTCCTGATTCCTGGTTCGC 57.956 50.000 0.00 0.00 33.58 4.70
285 286 0.984230 TTCCTGATTCCTGGTTCGCT 59.016 50.000 0.00 0.00 33.58 4.93
286 287 1.860641 TCCTGATTCCTGGTTCGCTA 58.139 50.000 0.00 0.00 33.58 4.26
287 288 1.757118 TCCTGATTCCTGGTTCGCTAG 59.243 52.381 0.00 0.00 33.58 3.42
288 289 1.482593 CCTGATTCCTGGTTCGCTAGT 59.517 52.381 0.00 0.00 0.00 2.57
289 290 2.482142 CCTGATTCCTGGTTCGCTAGTC 60.482 54.545 0.00 0.00 0.00 2.59
290 291 1.480954 TGATTCCTGGTTCGCTAGTCC 59.519 52.381 0.00 0.00 0.00 3.85
291 292 0.831307 ATTCCTGGTTCGCTAGTCCC 59.169 55.000 0.00 0.00 0.00 4.46
292 293 1.262640 TTCCTGGTTCGCTAGTCCCC 61.263 60.000 0.00 0.00 0.00 4.81
293 294 1.987855 CCTGGTTCGCTAGTCCCCA 60.988 63.158 0.00 0.00 0.00 4.96
294 295 1.338136 CCTGGTTCGCTAGTCCCCAT 61.338 60.000 0.00 0.00 0.00 4.00
295 296 0.105039 CTGGTTCGCTAGTCCCCATC 59.895 60.000 0.00 0.00 0.00 3.51
296 297 0.616395 TGGTTCGCTAGTCCCCATCA 60.616 55.000 0.00 0.00 0.00 3.07
297 298 0.759346 GGTTCGCTAGTCCCCATCAT 59.241 55.000 0.00 0.00 0.00 2.45
298 299 1.968493 GGTTCGCTAGTCCCCATCATA 59.032 52.381 0.00 0.00 0.00 2.15
299 300 2.567615 GGTTCGCTAGTCCCCATCATAT 59.432 50.000 0.00 0.00 0.00 1.78
300 301 3.008049 GGTTCGCTAGTCCCCATCATATT 59.992 47.826 0.00 0.00 0.00 1.28
301 302 4.505039 GGTTCGCTAGTCCCCATCATATTT 60.505 45.833 0.00 0.00 0.00 1.40
302 303 4.537135 TCGCTAGTCCCCATCATATTTC 57.463 45.455 0.00 0.00 0.00 2.17
303 304 3.056821 TCGCTAGTCCCCATCATATTTCG 60.057 47.826 0.00 0.00 0.00 3.46
304 305 3.056821 CGCTAGTCCCCATCATATTTCGA 60.057 47.826 0.00 0.00 0.00 3.71
305 306 4.246458 GCTAGTCCCCATCATATTTCGAC 58.754 47.826 0.00 0.00 0.00 4.20
354 355 5.808403 GTTGTACGTACCAAAACAACATCA 58.192 37.500 22.43 0.00 46.87 3.07
355 356 6.432107 GTTGTACGTACCAAAACAACATCAT 58.568 36.000 22.43 0.00 46.87 2.45
363 365 8.476142 CGTACCAAAACAACATCATTGTAAAAG 58.524 33.333 0.00 0.00 34.06 2.27
365 367 8.419076 ACCAAAACAACATCATTGTAAAAGTC 57.581 30.769 0.00 0.00 34.06 3.01
388 390 7.533900 AGTCATTCAAATACGAATTCAACAACG 59.466 33.333 6.22 0.00 33.27 4.10
431 433 9.221775 CCATTAACGTTTTGCTAGTCAAATATC 57.778 33.333 5.91 6.57 43.53 1.63
560 696 0.179129 CAGAATTCATTGCACCGCCC 60.179 55.000 8.44 0.00 0.00 6.13
590 726 1.003233 GTGACCTCCAGCTCCAACC 60.003 63.158 0.00 0.00 0.00 3.77
594 730 2.673523 CTCCAGCTCCAACCAGGG 59.326 66.667 0.00 0.00 38.24 4.45
595 731 3.635268 CTCCAGCTCCAACCAGGGC 62.635 68.421 0.00 0.00 38.24 5.19
680 830 2.969300 AAACGCCGGAAAGGAGCCAA 62.969 55.000 5.05 0.00 44.30 4.52
681 831 2.671619 CGCCGGAAAGGAGCCAAA 60.672 61.111 5.05 0.00 45.00 3.28
683 833 2.636412 GCCGGAAAGGAGCCAAACC 61.636 63.158 5.05 0.00 45.00 3.27
684 834 1.977009 CCGGAAAGGAGCCAAACCC 60.977 63.158 0.00 0.00 45.00 4.11
685 835 1.977009 CGGAAAGGAGCCAAACCCC 60.977 63.158 0.00 0.00 0.00 4.95
687 837 1.977009 GAAAGGAGCCAAACCCCCG 60.977 63.158 0.00 0.00 0.00 5.73
688 838 2.708593 GAAAGGAGCCAAACCCCCGT 62.709 60.000 0.00 0.00 0.00 5.28
689 839 2.306715 AAAGGAGCCAAACCCCCGTT 62.307 55.000 0.00 0.00 0.00 4.44
701 851 4.729856 CCCGTTCCCGTCGTCACC 62.730 72.222 0.00 0.00 0.00 4.02
721 871 1.735571 CCGTCACTGGATTTAAACCCG 59.264 52.381 0.00 0.00 0.00 5.28
733 883 4.988598 AACCCGCACGCTGACCTG 62.989 66.667 0.00 0.00 0.00 4.00
782 942 0.108567 GCACGTTTCTCCTCTCCTCC 60.109 60.000 0.00 0.00 0.00 4.30
811 972 2.919494 GCGGGTCAAACCAAGCCAG 61.919 63.158 0.00 0.00 41.02 4.85
822 983 0.607489 CCAAGCCAGAGGACACAAGG 60.607 60.000 0.00 0.00 0.00 3.61
855 1016 1.071471 CAAACGCTCCACCTCCAGT 59.929 57.895 0.00 0.00 0.00 4.00
900 1061 1.973281 AATTCCACCACAGCCGCAG 60.973 57.895 0.00 0.00 0.00 5.18
939 1116 0.666913 GCGGTATAAGAGCCAGACGA 59.333 55.000 0.00 0.00 0.00 4.20
944 1121 1.739338 ATAAGAGCCAGACGAGCGGG 61.739 60.000 0.00 0.00 34.64 6.13
974 1156 2.124278 GGTTCGGGCCTGGGAATC 60.124 66.667 12.87 5.49 0.00 2.52
1242 1424 1.082104 GAGGCAGTTTCCGTTTGCG 60.082 57.895 0.00 0.00 38.69 4.85
1243 1425 2.729491 GGCAGTTTCCGTTTGCGC 60.729 61.111 0.00 0.00 38.69 6.09
1251 1436 1.837538 TTCCGTTTGCGCTTTCCGAG 61.838 55.000 9.73 0.85 40.02 4.63
1274 1459 7.149224 CGAGTAATAATACCTCGCGTTTCTAAC 60.149 40.741 5.77 0.00 31.20 2.34
1309 1494 6.106003 ACAAAATCAAATAAAATCGGGAGCC 58.894 36.000 0.00 0.00 0.00 4.70
1314 1499 0.535102 ATAAAATCGGGAGCCCTGCG 60.535 55.000 3.70 0.00 0.00 5.18
1339 1524 8.798153 CGTTTACTGAATTAGATTTGAAATGCC 58.202 33.333 0.00 0.00 0.00 4.40
1345 1530 7.831753 TGAATTAGATTTGAAATGCCGGTTTA 58.168 30.769 1.90 0.00 0.00 2.01
1398 1583 1.276622 GGTTCTCCTGACCTGCCTAA 58.723 55.000 0.00 0.00 0.00 2.69
1404 1589 3.198635 TCTCCTGACCTGCCTAAGATTTG 59.801 47.826 0.00 0.00 0.00 2.32
1412 1597 4.042934 ACCTGCCTAAGATTTGTTACCAGT 59.957 41.667 0.00 0.00 0.00 4.00
1435 1620 0.729116 CGACCGATTTTCTGCATGCT 59.271 50.000 20.33 0.00 0.00 3.79
1438 1623 3.181511 CGACCGATTTTCTGCATGCTTAA 60.182 43.478 20.33 10.16 0.00 1.85
1489 1678 0.944386 TTTCACAAGTTCAGCGCTCC 59.056 50.000 7.13 0.00 0.00 4.70
1505 1723 3.712187 CGCTCCTGGAAGAAGATACTTC 58.288 50.000 0.00 0.00 43.60 3.01
1531 1749 1.272807 TTACCACCCCTGTAGACTGC 58.727 55.000 0.00 0.00 0.00 4.40
1539 1757 0.249238 CCTGTAGACTGCAGCCGATC 60.249 60.000 15.27 3.45 32.93 3.69
1637 1855 7.042335 CCCTGTTTTCAATCCTGTACTACTAG 58.958 42.308 0.00 0.00 0.00 2.57
1643 1861 9.595823 TTTTCAATCCTGTACTACTAGTATTGC 57.404 33.333 2.33 2.14 32.65 3.56
1644 1862 8.534954 TTCAATCCTGTACTACTAGTATTGCT 57.465 34.615 2.33 0.00 32.65 3.91
1645 1863 7.941919 TCAATCCTGTACTACTAGTATTGCTG 58.058 38.462 2.33 5.75 32.65 4.41
1646 1864 7.560262 TCAATCCTGTACTACTAGTATTGCTGT 59.440 37.037 2.33 0.05 32.65 4.40
1647 1865 6.694877 TCCTGTACTACTAGTATTGCTGTG 57.305 41.667 2.33 1.48 32.65 3.66
1648 1866 6.185511 TCCTGTACTACTAGTATTGCTGTGT 58.814 40.000 2.33 0.00 32.65 3.72
1649 1867 7.341030 TCCTGTACTACTAGTATTGCTGTGTA 58.659 38.462 2.33 0.00 32.65 2.90
1650 1868 7.281774 TCCTGTACTACTAGTATTGCTGTGTAC 59.718 40.741 14.72 14.72 32.65 2.90
1651 1869 7.282675 CCTGTACTACTAGTATTGCTGTGTACT 59.717 40.741 19.11 0.00 32.65 2.73
1652 1870 9.322773 CTGTACTACTAGTATTGCTGTGTACTA 57.677 37.037 19.11 10.30 32.65 1.82
1657 1875 4.737855 AGTATTGCTGTGTACTAGTGGG 57.262 45.455 5.39 0.00 29.75 4.61
1665 1883 4.159879 GCTGTGTACTAGTGGGAGTATTGT 59.840 45.833 5.39 0.00 34.50 2.71
1677 1895 3.153919 GGAGTATTGTTGTGGCTTTGGA 58.846 45.455 0.00 0.00 0.00 3.53
1692 1910 4.301628 GCTTTGGACCATTCACTTCTTTG 58.698 43.478 0.00 0.00 0.00 2.77
1695 1913 1.546029 GGACCATTCACTTCTTTGCCC 59.454 52.381 0.00 0.00 0.00 5.36
1785 2007 7.301054 CGCCATATCTTTTTAAGCTAATCCAG 58.699 38.462 0.00 0.00 0.00 3.86
1923 2145 0.813821 GCTTCCTTTGCTCATCACCC 59.186 55.000 0.00 0.00 0.00 4.61
1986 2208 2.832129 CTCCTACCACCAGCTTTCTGTA 59.168 50.000 0.00 0.00 38.66 2.74
2000 2222 4.265320 GCTTTCTGTATTTATGGCAAACGC 59.735 41.667 0.00 0.00 0.00 4.84
2152 2375 7.200455 TGACCATACGTACTATGACAATTCAG 58.800 38.462 0.00 0.00 35.06 3.02
2158 2381 4.548916 CGTACTATGACAATTCAGCAAGCG 60.549 45.833 0.00 0.00 34.35 4.68
2190 2413 2.892373 TTGCGCCTCTTTATTTGACG 57.108 45.000 4.18 0.00 0.00 4.35
2313 2702 2.298411 TTATAAGTTGGACCGACCGC 57.702 50.000 8.37 0.00 42.61 5.68
2335 2724 1.609208 CACAGCCTGCACCTAGTTTT 58.391 50.000 0.00 0.00 0.00 2.43
2353 2742 8.227119 CCTAGTTTTGTTTTGGTTCTTTTGTTG 58.773 33.333 0.00 0.00 0.00 3.33
2359 2748 8.608844 TTGTTTTGGTTCTTTTGTTGTGTATT 57.391 26.923 0.00 0.00 0.00 1.89
2408 2798 0.601057 GGCGGGTTTACTTTGCATGT 59.399 50.000 0.00 0.00 0.00 3.21
2418 2808 3.146104 ACTTTGCATGTGAAGGTAGCT 57.854 42.857 12.69 0.00 0.00 3.32
2443 2833 6.857777 TTACCATTTGCAAAACCATTGAAG 57.142 33.333 17.19 0.67 0.00 3.02
2536 2926 2.288666 CAACATGTGGGGATAAGACCG 58.711 52.381 0.00 0.00 0.00 4.79
2574 2965 0.184211 AAAGTTTGGTGGTAGGCGGT 59.816 50.000 0.00 0.00 0.00 5.68
2578 2969 1.997256 TTTGGTGGTAGGCGGTTGGT 61.997 55.000 0.00 0.00 0.00 3.67
2688 3084 4.634443 ACAAACATTTACCTCCGTATGCTC 59.366 41.667 0.00 0.00 0.00 4.26
2724 3153 7.307337 GGTTTGGCAAATTCATGAAACAGTTAG 60.307 37.037 16.74 0.17 0.00 2.34
2736 3165 7.766278 TCATGAAACAGTTAGCCTCTTTATCTC 59.234 37.037 0.00 0.00 0.00 2.75
2783 3214 9.733556 TCTTTGTATAATAGTTGACACAACCAT 57.266 29.630 10.38 1.05 0.00 3.55
2931 3363 3.429492 TCGTGTATGTAAGGTGGTACCA 58.571 45.455 11.60 11.60 41.95 3.25
2943 3375 2.754648 GGTACCAGACCCAGACACA 58.245 57.895 7.15 0.00 43.25 3.72
3058 3490 8.874816 CATTTTCCGGAAACTTAAACAGAAAAA 58.125 29.630 28.97 9.76 36.08 1.94
3062 3494 7.204604 TCCGGAAACTTAAACAGAAAAATTCC 58.795 34.615 0.00 0.00 0.00 3.01
3063 3495 6.422701 CCGGAAACTTAAACAGAAAAATTCCC 59.577 38.462 0.00 0.00 32.16 3.97
3086 3518 1.886542 CTTAAGCGGAAACTTTGCCCT 59.113 47.619 0.00 0.00 0.00 5.19
3099 3531 3.506067 ACTTTGCCCTGGAAAAAGATACG 59.494 43.478 20.85 3.28 35.39 3.06
3142 3574 1.673920 TGGAAACAGAAACAGTTCCGC 59.326 47.619 0.00 0.00 33.92 5.54
3213 3645 2.091555 GGCCCATCCACAATAACCCTAA 60.092 50.000 0.00 0.00 34.01 2.69
3214 3646 3.628769 GGCCCATCCACAATAACCCTAAA 60.629 47.826 0.00 0.00 34.01 1.85
3215 3647 4.223144 GCCCATCCACAATAACCCTAAAT 58.777 43.478 0.00 0.00 0.00 1.40
3216 3648 4.653801 GCCCATCCACAATAACCCTAAATT 59.346 41.667 0.00 0.00 0.00 1.82
3217 3649 5.221441 GCCCATCCACAATAACCCTAAATTC 60.221 44.000 0.00 0.00 0.00 2.17
3250 3682 2.431057 TGTCTAGCTCCCGATCTTTTCC 59.569 50.000 0.00 0.00 0.00 3.13
3251 3683 2.696187 GTCTAGCTCCCGATCTTTTCCT 59.304 50.000 0.00 0.00 0.00 3.36
3252 3684 2.695666 TCTAGCTCCCGATCTTTTCCTG 59.304 50.000 0.00 0.00 0.00 3.86
3254 3686 1.208293 AGCTCCCGATCTTTTCCTGTC 59.792 52.381 0.00 0.00 0.00 3.51
3255 3687 1.208293 GCTCCCGATCTTTTCCTGTCT 59.792 52.381 0.00 0.00 0.00 3.41
3257 3689 3.738590 GCTCCCGATCTTTTCCTGTCTAC 60.739 52.174 0.00 0.00 0.00 2.59
3336 4095 9.573133 AACTGAACTCTTTACAACAGAAATTTG 57.427 29.630 0.00 0.00 0.00 2.32
3361 4120 4.864916 ACTTGCGATGTAATGTCATGTC 57.135 40.909 0.00 0.00 0.00 3.06
3365 4124 6.593770 ACTTGCGATGTAATGTCATGTCTTTA 59.406 34.615 0.00 0.00 0.00 1.85
3519 4358 1.200948 GTGCCATCCAAGAAGCTGTTC 59.799 52.381 0.00 0.00 0.00 3.18
3865 4710 1.021202 CAAGTTCCAAACCGTCAGCA 58.979 50.000 0.00 0.00 0.00 4.41
4027 4872 3.257469 TCCACAGTCATCATCTCAAGC 57.743 47.619 0.00 0.00 0.00 4.01
4049 4894 3.944015 CTGGATTTTCTGTCCTGATCCAC 59.056 47.826 0.00 0.00 40.85 4.02
4397 5242 4.452455 GCTGAAGCACTTAAGAAAGCTACA 59.548 41.667 10.09 0.27 41.59 2.74
4424 5269 4.991056 GTGATTGAGGATCGCAGCTATAAA 59.009 41.667 0.00 0.00 43.33 1.40
4469 5314 1.204704 CTGTCTGACGGGCAAGATACA 59.795 52.381 8.80 0.00 0.00 2.29
4874 5719 1.734465 GAGAGGGACATTTTGCTGTCG 59.266 52.381 0.00 0.00 45.26 4.35
4876 5721 1.212751 GGGACATTTTGCTGTCGGC 59.787 57.895 0.00 0.00 45.26 5.54
4943 5791 5.248477 TGCTTGTTCTTACAGGGATCTAACT 59.752 40.000 0.00 0.00 35.28 2.24
4967 5815 4.890158 TGAGACCATCAAGCTTCAAGTA 57.110 40.909 0.00 0.00 34.02 2.24
5030 5878 5.647658 TGAACATGTATCCATTGAGGTTGAC 59.352 40.000 0.00 0.00 39.02 3.18
5066 5914 3.257393 CATACAGGCCGCTGATTCTATC 58.743 50.000 0.00 0.00 0.00 2.08
5105 5953 2.270527 GAGAGGGGTGCTCTTGCC 59.729 66.667 0.00 0.00 38.71 4.52
5117 5965 2.031012 CTTGCCGAGGCTGTGACA 59.969 61.111 15.75 0.00 42.51 3.58
5133 5981 1.699083 TGACAATTCTGGAGGACTGCA 59.301 47.619 0.00 0.00 0.00 4.41
5142 5990 1.326951 GGAGGACTGCAGGAGGAGAC 61.327 65.000 19.93 2.54 36.58 3.36
5228 6076 1.301558 GATGCAGGAGAGGATGGCG 60.302 63.158 0.00 0.00 0.00 5.69
5288 6136 0.741326 TATCTGGACTGAGCTCGCAC 59.259 55.000 9.64 2.29 0.00 5.34
5387 6235 4.009675 TGGTTCAGATGTTACAGCATTCC 58.990 43.478 2.79 0.77 0.00 3.01
5396 6244 0.253044 TACAGCATTCCCAGAGCCAC 59.747 55.000 0.00 0.00 0.00 5.01
5408 6256 4.473520 AGCCACATCCCTTCGCCG 62.474 66.667 0.00 0.00 0.00 6.46
5546 6395 1.879380 TGTTTCCTTGATTGCTGGACG 59.121 47.619 0.00 0.00 0.00 4.79
5633 6482 3.571401 GGGATTGAGCTGGGTAATGAATG 59.429 47.826 0.00 0.00 0.00 2.67
5668 6520 9.790297 ATTCTGGGATATCAGTATGTATTACCT 57.210 33.333 4.83 0.00 37.40 3.08
5778 6630 6.186957 TCTTCTGCCTATTTGCTTATTTGGA 58.813 36.000 0.00 0.00 0.00 3.53
5787 6640 2.076100 TGCTTATTTGGAGTCAGCGTG 58.924 47.619 0.00 0.00 32.85 5.34
5788 6641 1.202076 GCTTATTTGGAGTCAGCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
5794 6647 1.725641 TGGAGTCAGCGTGCTTTATG 58.274 50.000 0.00 0.00 0.00 1.90
5829 6682 1.299541 ACGTGCTGGCATATTGCTAC 58.700 50.000 0.00 0.00 44.28 3.58
5830 6683 1.298602 CGTGCTGGCATATTGCTACA 58.701 50.000 0.00 0.00 44.28 2.74
5855 6708 7.965107 CAGTATGCTATTGGAGTGTTTCTTTTC 59.035 37.037 0.00 0.00 0.00 2.29
5867 6720 4.746611 GTGTTTCTTTTCCCTTGCAATCTG 59.253 41.667 0.00 0.00 0.00 2.90
5868 6721 4.648762 TGTTTCTTTTCCCTTGCAATCTGA 59.351 37.500 0.00 0.00 0.00 3.27
5869 6722 5.221303 TGTTTCTTTTCCCTTGCAATCTGAG 60.221 40.000 0.00 0.00 0.00 3.35
5870 6723 4.104383 TCTTTTCCCTTGCAATCTGAGT 57.896 40.909 0.00 0.00 0.00 3.41
5871 6724 5.241403 TCTTTTCCCTTGCAATCTGAGTA 57.759 39.130 0.00 0.00 0.00 2.59
5872 6725 5.003804 TCTTTTCCCTTGCAATCTGAGTAC 58.996 41.667 0.00 0.00 0.00 2.73
5873 6726 4.365514 TTTCCCTTGCAATCTGAGTACA 57.634 40.909 0.00 0.00 0.00 2.90
5874 6727 4.574674 TTCCCTTGCAATCTGAGTACAT 57.425 40.909 0.00 0.00 0.00 2.29
5875 6728 5.692115 TTCCCTTGCAATCTGAGTACATA 57.308 39.130 0.00 0.00 0.00 2.29
5876 6729 5.894298 TCCCTTGCAATCTGAGTACATAT 57.106 39.130 0.00 0.00 0.00 1.78
5887 6740 7.857734 ATCTGAGTACATATCATCTCCTACG 57.142 40.000 0.00 0.00 0.00 3.51
5898 6751 5.904362 TCATCTCCTACGGATGATGTATG 57.096 43.478 15.46 0.00 42.86 2.39
5903 6756 2.093973 CCTACGGATGATGTATGAGGGC 60.094 54.545 0.00 0.00 0.00 5.19
5919 6772 2.129785 GGCATCTCCAATGGCCACC 61.130 63.158 8.16 0.00 45.70 4.61
5921 6774 1.825191 CATCTCCAATGGCCACCCG 60.825 63.158 8.16 0.00 0.00 5.28
5935 6788 0.897863 CACCCGCAAATTTCCTCCCA 60.898 55.000 0.00 0.00 0.00 4.37
5937 6790 0.897863 CCCGCAAATTTCCTCCCACA 60.898 55.000 0.00 0.00 0.00 4.17
5939 6792 1.550072 CCGCAAATTTCCTCCCACATT 59.450 47.619 0.00 0.00 0.00 2.71
5940 6793 2.028203 CCGCAAATTTCCTCCCACATTT 60.028 45.455 0.00 0.00 0.00 2.32
5941 6794 3.194542 CCGCAAATTTCCTCCCACATTTA 59.805 43.478 0.00 0.00 0.00 1.40
5943 6796 5.418676 CGCAAATTTCCTCCCACATTTATT 58.581 37.500 0.00 0.00 0.00 1.40
5944 6797 5.519927 CGCAAATTTCCTCCCACATTTATTC 59.480 40.000 0.00 0.00 0.00 1.75
5963 6817 1.562008 TCGTGGAGAGAGGATCAGTCT 59.438 52.381 0.00 0.00 37.82 3.24
5964 6818 1.675483 CGTGGAGAGAGGATCAGTCTG 59.325 57.143 1.68 0.00 37.82 3.51
5971 6825 0.532573 GAGGATCAGTCTGCGGACAA 59.467 55.000 27.02 15.11 44.36 3.18
5972 6826 1.137872 GAGGATCAGTCTGCGGACAAT 59.862 52.381 27.02 19.01 44.36 2.71
6056 6910 4.548077 CGAATGAAAATCGTACAAACACGG 59.452 41.667 0.00 0.00 42.19 4.94
6068 6922 3.013921 ACAAACACGGCGGATTTCATAT 58.986 40.909 13.24 0.00 0.00 1.78
6069 6923 3.181501 ACAAACACGGCGGATTTCATATG 60.182 43.478 13.24 0.00 0.00 1.78
6073 6927 2.154963 CACGGCGGATTTCATATGTACG 59.845 50.000 13.24 0.00 0.00 3.67
6075 6929 2.608506 CGGCGGATTTCATATGTACGGA 60.609 50.000 0.00 0.00 0.00 4.69
6076 6930 3.596214 GGCGGATTTCATATGTACGGAT 58.404 45.455 1.90 0.00 0.00 4.18
6077 6931 4.000988 GGCGGATTTCATATGTACGGATT 58.999 43.478 1.90 0.00 0.00 3.01
6078 6932 5.172934 GGCGGATTTCATATGTACGGATTA 58.827 41.667 1.90 0.00 0.00 1.75
6079 6933 5.063060 GGCGGATTTCATATGTACGGATTAC 59.937 44.000 1.90 0.00 0.00 1.89
6080 6934 5.636121 GCGGATTTCATATGTACGGATTACA 59.364 40.000 1.90 0.00 45.03 2.41
6090 6945 6.691754 ATGTACGGATTACAATCATGCAAA 57.308 33.333 0.00 0.00 44.11 3.68
6114 6969 5.105917 ACATGGCGGATTTTCGTTAGATTTT 60.106 36.000 0.00 0.00 0.00 1.82
6166 7024 2.555757 CGACCCTAAACCTATCCTACGG 59.444 54.545 0.00 0.00 0.00 4.02
6168 7026 2.322658 CCCTAAACCTATCCTACGGCA 58.677 52.381 0.00 0.00 0.00 5.69
6169 7027 2.299297 CCCTAAACCTATCCTACGGCAG 59.701 54.545 0.00 0.00 0.00 4.85
6174 7032 1.286260 CTATCCTACGGCAGCGTCC 59.714 63.158 0.00 0.00 0.00 4.79
6175 7033 1.452953 CTATCCTACGGCAGCGTCCA 61.453 60.000 0.00 0.00 0.00 4.02
6176 7034 1.452953 TATCCTACGGCAGCGTCCAG 61.453 60.000 0.00 0.00 0.00 3.86
6220 7078 3.499737 CGCCGCCTTCATGACCAC 61.500 66.667 0.00 0.00 0.00 4.16
6223 7081 2.819595 CGCCTTCATGACCACCGG 60.820 66.667 0.00 0.00 0.00 5.28
6224 7082 3.134127 GCCTTCATGACCACCGGC 61.134 66.667 0.00 0.00 0.00 6.13
6250 7108 1.016130 ACCGATGAAGTGAAGCTGCG 61.016 55.000 0.00 0.00 0.00 5.18
6275 7133 4.224594 TCTCCTACGAGGAAGAGTAGAACA 59.775 45.833 4.40 0.00 45.28 3.18
6276 7134 4.260170 TCCTACGAGGAAGAGTAGAACAC 58.740 47.826 4.40 0.00 42.51 3.32
6279 7137 1.132643 CGAGGAAGAGTAGAACACGGG 59.867 57.143 0.00 0.00 0.00 5.28
6283 7141 2.164017 GGAAGAGTAGAACACGGGAGAC 59.836 54.545 0.00 0.00 0.00 3.36
6340 7198 3.757623 CGTAGCTATCGACCTGCTC 57.242 57.895 11.15 4.51 38.15 4.26
6341 7199 0.110599 CGTAGCTATCGACCTGCTCG 60.111 60.000 11.15 10.86 44.44 5.03
6352 7210 2.875188 CCTGCTCGAGGTGACTAGT 58.125 57.895 15.58 0.00 44.43 2.57
6353 7211 1.178276 CCTGCTCGAGGTGACTAGTT 58.822 55.000 15.58 0.00 44.43 2.24
6354 7212 1.135257 CCTGCTCGAGGTGACTAGTTG 60.135 57.143 15.58 0.00 44.43 3.16
6355 7213 1.813178 CTGCTCGAGGTGACTAGTTGA 59.187 52.381 15.58 0.00 44.43 3.18
6356 7214 2.229062 CTGCTCGAGGTGACTAGTTGAA 59.771 50.000 15.58 0.00 44.43 2.69
6357 7215 2.826128 TGCTCGAGGTGACTAGTTGAAT 59.174 45.455 15.58 0.00 44.43 2.57
6358 7216 3.258372 TGCTCGAGGTGACTAGTTGAATT 59.742 43.478 15.58 0.00 44.43 2.17
6359 7217 3.614616 GCTCGAGGTGACTAGTTGAATTG 59.385 47.826 15.58 0.00 44.43 2.32
6360 7218 4.177026 CTCGAGGTGACTAGTTGAATTGG 58.823 47.826 3.91 0.00 44.43 3.16
6361 7219 2.673368 CGAGGTGACTAGTTGAATTGGC 59.327 50.000 0.00 0.00 44.43 4.52
6362 7220 3.674997 GAGGTGACTAGTTGAATTGGCA 58.325 45.455 0.00 0.00 44.43 4.92
6363 7221 3.412386 AGGTGACTAGTTGAATTGGCAC 58.588 45.455 0.00 0.00 40.61 5.01
6364 7222 2.159627 GGTGACTAGTTGAATTGGCACG 59.840 50.000 0.00 0.00 0.00 5.34
6365 7223 1.804151 TGACTAGTTGAATTGGCACGC 59.196 47.619 0.00 0.00 0.00 5.34
6366 7224 0.796312 ACTAGTTGAATTGGCACGCG 59.204 50.000 3.53 3.53 0.00 6.01
6367 7225 0.796312 CTAGTTGAATTGGCACGCGT 59.204 50.000 5.58 5.58 0.00 6.01
6368 7226 1.996898 CTAGTTGAATTGGCACGCGTA 59.003 47.619 13.44 0.00 0.00 4.42
6369 7227 0.796312 AGTTGAATTGGCACGCGTAG 59.204 50.000 13.44 7.98 0.00 3.51
6382 7240 3.335513 CGTAGCCGCCAAACACAA 58.664 55.556 0.00 0.00 0.00 3.33
6383 7241 1.649815 CGTAGCCGCCAAACACAAA 59.350 52.632 0.00 0.00 0.00 2.83
6384 7242 0.385473 CGTAGCCGCCAAACACAAAG 60.385 55.000 0.00 0.00 0.00 2.77
6385 7243 0.948678 GTAGCCGCCAAACACAAAGA 59.051 50.000 0.00 0.00 0.00 2.52
6386 7244 1.335496 GTAGCCGCCAAACACAAAGAA 59.665 47.619 0.00 0.00 0.00 2.52
6387 7245 0.385390 AGCCGCCAAACACAAAGAAG 59.615 50.000 0.00 0.00 0.00 2.85
6388 7246 1.215014 GCCGCCAAACACAAAGAAGC 61.215 55.000 0.00 0.00 0.00 3.86
6389 7247 0.385390 CCGCCAAACACAAAGAAGCT 59.615 50.000 0.00 0.00 0.00 3.74
6390 7248 1.480205 CGCCAAACACAAAGAAGCTG 58.520 50.000 0.00 0.00 0.00 4.24
6391 7249 1.065401 CGCCAAACACAAAGAAGCTGA 59.935 47.619 0.00 0.00 0.00 4.26
6392 7250 2.463876 GCCAAACACAAAGAAGCTGAC 58.536 47.619 0.00 0.00 0.00 3.51
6393 7251 2.799562 GCCAAACACAAAGAAGCTGACC 60.800 50.000 0.00 0.00 0.00 4.02
6394 7252 2.426738 CCAAACACAAAGAAGCTGACCA 59.573 45.455 0.00 0.00 0.00 4.02
6395 7253 3.489738 CCAAACACAAAGAAGCTGACCAG 60.490 47.826 0.00 0.00 0.00 4.00
6396 7254 1.972872 ACACAAAGAAGCTGACCAGG 58.027 50.000 0.00 0.00 0.00 4.45
6397 7255 1.490490 ACACAAAGAAGCTGACCAGGA 59.510 47.619 0.00 0.00 0.00 3.86
6398 7256 2.092429 ACACAAAGAAGCTGACCAGGAA 60.092 45.455 0.00 0.00 0.00 3.36
6399 7257 2.551459 CACAAAGAAGCTGACCAGGAAG 59.449 50.000 0.00 0.00 0.00 3.46
6400 7258 2.439507 ACAAAGAAGCTGACCAGGAAGA 59.560 45.455 0.00 0.00 0.00 2.87
6401 7259 3.117888 ACAAAGAAGCTGACCAGGAAGAA 60.118 43.478 0.00 0.00 0.00 2.52
6402 7260 3.864789 AAGAAGCTGACCAGGAAGAAA 57.135 42.857 0.00 0.00 0.00 2.52
6403 7261 3.415457 AGAAGCTGACCAGGAAGAAAG 57.585 47.619 0.00 0.00 0.00 2.62
6404 7262 2.039613 AGAAGCTGACCAGGAAGAAAGG 59.960 50.000 0.00 0.00 0.00 3.11
6405 7263 1.439543 AGCTGACCAGGAAGAAAGGT 58.560 50.000 0.00 0.00 38.63 3.50
6406 7264 1.777272 AGCTGACCAGGAAGAAAGGTT 59.223 47.619 0.00 0.00 35.36 3.50
6407 7265 2.175715 AGCTGACCAGGAAGAAAGGTTT 59.824 45.455 0.00 0.00 35.36 3.27
6408 7266 2.554462 GCTGACCAGGAAGAAAGGTTTC 59.446 50.000 0.00 0.00 35.36 2.78
6410 7268 4.068599 CTGACCAGGAAGAAAGGTTTCTC 58.931 47.826 5.45 0.65 46.22 2.87
6411 7269 3.181443 TGACCAGGAAGAAAGGTTTCTCC 60.181 47.826 5.45 8.56 46.22 3.71
6412 7270 2.224548 ACCAGGAAGAAAGGTTTCTCCG 60.225 50.000 5.45 5.94 46.22 4.63
6413 7271 2.427506 CAGGAAGAAAGGTTTCTCCGG 58.572 52.381 5.45 0.00 46.22 5.14
6414 7272 2.038557 CAGGAAGAAAGGTTTCTCCGGA 59.961 50.000 2.93 2.93 46.22 5.14
6415 7273 2.709397 AGGAAGAAAGGTTTCTCCGGAA 59.291 45.455 5.23 0.00 46.22 4.30
6416 7274 3.137728 AGGAAGAAAGGTTTCTCCGGAAA 59.862 43.478 5.23 0.00 46.22 3.13
6424 7282 1.533625 TTTCTCCGGAAACAGCATGG 58.466 50.000 5.23 0.00 43.62 3.66
6425 7283 0.400213 TTCTCCGGAAACAGCATGGT 59.600 50.000 5.23 0.00 38.54 3.55
6426 7284 0.036388 TCTCCGGAAACAGCATGGTC 60.036 55.000 5.23 0.00 27.21 4.02
6427 7285 1.002624 TCCGGAAACAGCATGGTCC 60.003 57.895 0.00 0.00 27.21 4.46
6428 7286 2.046285 CCGGAAACAGCATGGTCCC 61.046 63.158 0.00 0.00 27.21 4.46
6429 7287 2.046285 CGGAAACAGCATGGTCCCC 61.046 63.158 0.00 0.00 27.21 4.81
6430 7288 2.046285 GGAAACAGCATGGTCCCCG 61.046 63.158 0.00 0.00 27.21 5.73
6431 7289 1.002624 GAAACAGCATGGTCCCCGA 60.003 57.895 0.00 0.00 27.21 5.14
6432 7290 1.303317 AAACAGCATGGTCCCCGAC 60.303 57.895 0.00 0.00 27.21 4.79
6433 7291 3.605749 AACAGCATGGTCCCCGACG 62.606 63.158 0.00 0.00 43.62 5.12
6434 7292 3.770040 CAGCATGGTCCCCGACGA 61.770 66.667 0.00 0.00 32.65 4.20
6435 7293 3.771160 AGCATGGTCCCCGACGAC 61.771 66.667 0.00 0.00 32.65 4.34
6436 7294 4.077184 GCATGGTCCCCGACGACA 62.077 66.667 0.00 0.00 34.24 4.35
6437 7295 2.660206 CATGGTCCCCGACGACAA 59.340 61.111 0.00 0.00 34.24 3.18
6438 7296 1.004320 CATGGTCCCCGACGACAAA 60.004 57.895 0.00 0.00 34.24 2.83
6439 7297 0.392461 CATGGTCCCCGACGACAAAT 60.392 55.000 0.00 0.00 34.24 2.32
6440 7298 0.107848 ATGGTCCCCGACGACAAATC 60.108 55.000 0.00 0.00 34.24 2.17
6453 7311 3.615849 GACAAATCGAGCCATCAATCC 57.384 47.619 0.00 0.00 0.00 3.01
6454 7312 3.209410 GACAAATCGAGCCATCAATCCT 58.791 45.455 0.00 0.00 0.00 3.24
6455 7313 3.624777 ACAAATCGAGCCATCAATCCTT 58.375 40.909 0.00 0.00 0.00 3.36
6456 7314 3.629398 ACAAATCGAGCCATCAATCCTTC 59.371 43.478 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 4.082571 GGTCCAACTTTGACCATCAATCTG 60.083 45.833 7.09 0.00 36.11 2.90
94 95 5.047802 ACTCATATTGCAAGGTCCAACTTTG 60.048 40.000 4.94 0.00 38.11 2.77
117 118 9.941664 GCATGTTCCTATTAATATATGATGCAC 57.058 33.333 15.10 0.00 0.00 4.57
142 143 4.086574 GCAACTTCGTATTTTTACTCCGC 58.913 43.478 0.00 0.00 0.00 5.54
221 222 8.784043 GCTCTAAAGGAATTTTCTGTACAAGAA 58.216 33.333 0.00 0.37 43.37 2.52
222 223 7.390718 GGCTCTAAAGGAATTTTCTGTACAAGA 59.609 37.037 0.00 0.00 0.00 3.02
223 224 7.391833 AGGCTCTAAAGGAATTTTCTGTACAAG 59.608 37.037 0.00 0.00 0.00 3.16
224 225 7.231467 AGGCTCTAAAGGAATTTTCTGTACAA 58.769 34.615 0.00 0.00 0.00 2.41
225 226 6.779860 AGGCTCTAAAGGAATTTTCTGTACA 58.220 36.000 0.00 0.00 0.00 2.90
226 227 7.689446 AAGGCTCTAAAGGAATTTTCTGTAC 57.311 36.000 0.00 0.00 0.00 2.90
228 229 9.620259 CTATAAGGCTCTAAAGGAATTTTCTGT 57.380 33.333 0.00 0.00 0.00 3.41
229 230 9.620259 ACTATAAGGCTCTAAAGGAATTTTCTG 57.380 33.333 0.00 0.00 0.00 3.02
233 234 9.755122 ACAAACTATAAGGCTCTAAAGGAATTT 57.245 29.630 0.00 0.00 0.00 1.82
253 254 8.971073 CCAGGAATCAGGAATATTTTACAAACT 58.029 33.333 0.00 0.00 0.00 2.66
254 255 8.749354 ACCAGGAATCAGGAATATTTTACAAAC 58.251 33.333 0.00 0.00 0.00 2.93
255 256 8.893563 ACCAGGAATCAGGAATATTTTACAAA 57.106 30.769 0.00 0.00 0.00 2.83
256 257 8.893563 AACCAGGAATCAGGAATATTTTACAA 57.106 30.769 0.00 0.00 0.00 2.41
257 258 7.282224 CGAACCAGGAATCAGGAATATTTTACA 59.718 37.037 0.00 0.00 0.00 2.41
258 259 7.639945 CGAACCAGGAATCAGGAATATTTTAC 58.360 38.462 0.00 0.00 0.00 2.01
259 260 6.262273 GCGAACCAGGAATCAGGAATATTTTA 59.738 38.462 0.00 0.00 0.00 1.52
260 261 5.067805 GCGAACCAGGAATCAGGAATATTTT 59.932 40.000 0.00 0.00 0.00 1.82
261 262 4.580580 GCGAACCAGGAATCAGGAATATTT 59.419 41.667 0.00 0.00 0.00 1.40
262 263 4.137543 GCGAACCAGGAATCAGGAATATT 58.862 43.478 0.00 0.00 0.00 1.28
263 264 3.392616 AGCGAACCAGGAATCAGGAATAT 59.607 43.478 0.00 0.00 0.00 1.28
264 265 2.771943 AGCGAACCAGGAATCAGGAATA 59.228 45.455 0.00 0.00 0.00 1.75
265 266 1.561542 AGCGAACCAGGAATCAGGAAT 59.438 47.619 0.00 0.00 0.00 3.01
266 267 0.984230 AGCGAACCAGGAATCAGGAA 59.016 50.000 0.00 0.00 0.00 3.36
267 268 1.757118 CTAGCGAACCAGGAATCAGGA 59.243 52.381 0.00 0.00 0.00 3.86
268 269 1.482593 ACTAGCGAACCAGGAATCAGG 59.517 52.381 0.00 0.00 0.00 3.86
269 270 2.482142 GGACTAGCGAACCAGGAATCAG 60.482 54.545 0.00 0.00 0.00 2.90
270 271 1.480954 GGACTAGCGAACCAGGAATCA 59.519 52.381 0.00 0.00 0.00 2.57
271 272 1.202545 GGGACTAGCGAACCAGGAATC 60.203 57.143 0.00 0.00 0.00 2.52
272 273 0.831307 GGGACTAGCGAACCAGGAAT 59.169 55.000 0.00 0.00 0.00 3.01
273 274 1.262640 GGGGACTAGCGAACCAGGAA 61.263 60.000 0.00 0.00 0.00 3.36
274 275 1.684734 GGGGACTAGCGAACCAGGA 60.685 63.158 0.00 0.00 0.00 3.86
275 276 1.338136 ATGGGGACTAGCGAACCAGG 61.338 60.000 0.00 0.00 34.23 4.45
276 277 0.105039 GATGGGGACTAGCGAACCAG 59.895 60.000 0.00 0.00 34.23 4.00
277 278 0.616395 TGATGGGGACTAGCGAACCA 60.616 55.000 0.00 0.00 35.39 3.67
278 279 0.759346 ATGATGGGGACTAGCGAACC 59.241 55.000 0.00 0.00 0.00 3.62
279 280 3.963428 ATATGATGGGGACTAGCGAAC 57.037 47.619 0.00 0.00 0.00 3.95
280 281 4.560716 CGAAATATGATGGGGACTAGCGAA 60.561 45.833 0.00 0.00 0.00 4.70
281 282 3.056821 CGAAATATGATGGGGACTAGCGA 60.057 47.826 0.00 0.00 0.00 4.93
282 283 3.056821 TCGAAATATGATGGGGACTAGCG 60.057 47.826 0.00 0.00 0.00 4.26
283 284 4.246458 GTCGAAATATGATGGGGACTAGC 58.754 47.826 0.00 0.00 0.00 3.42
284 285 4.283467 TGGTCGAAATATGATGGGGACTAG 59.717 45.833 0.00 0.00 0.00 2.57
285 286 4.228010 TGGTCGAAATATGATGGGGACTA 58.772 43.478 0.00 0.00 0.00 2.59
286 287 3.045634 TGGTCGAAATATGATGGGGACT 58.954 45.455 0.00 0.00 0.00 3.85
287 288 3.485463 TGGTCGAAATATGATGGGGAC 57.515 47.619 0.00 0.00 0.00 4.46
288 289 3.650461 TCATGGTCGAAATATGATGGGGA 59.350 43.478 0.00 0.00 0.00 4.81
289 290 4.019792 TCATGGTCGAAATATGATGGGG 57.980 45.455 0.00 0.00 0.00 4.96
290 291 6.579666 AAATCATGGTCGAAATATGATGGG 57.420 37.500 16.39 0.00 39.82 4.00
291 292 9.398170 GTTAAAATCATGGTCGAAATATGATGG 57.602 33.333 16.39 0.00 39.82 3.51
294 295 9.173021 ACAGTTAAAATCATGGTCGAAATATGA 57.827 29.630 9.16 9.16 35.52 2.15
295 296 9.787532 AACAGTTAAAATCATGGTCGAAATATG 57.212 29.630 0.00 0.00 0.00 1.78
335 336 6.621316 ACAATGATGTTGTTTTGGTACGTA 57.379 33.333 0.00 0.00 35.91 3.57
363 365 7.322699 ACGTTGTTGAATTCGTATTTGAATGAC 59.677 33.333 0.04 0.00 38.54 3.06
365 367 7.547285 ACGTTGTTGAATTCGTATTTGAATG 57.453 32.000 0.04 0.00 38.54 2.67
396 398 4.673441 CAAAACGTTAATGGGTGTCAACA 58.327 39.130 0.00 0.00 0.00 3.33
397 399 3.487942 GCAAAACGTTAATGGGTGTCAAC 59.512 43.478 0.00 0.00 0.00 3.18
399 401 2.952978 AGCAAAACGTTAATGGGTGTCA 59.047 40.909 0.00 0.00 0.00 3.58
400 402 3.636282 AGCAAAACGTTAATGGGTGTC 57.364 42.857 0.00 0.00 0.00 3.67
401 403 4.139038 ACTAGCAAAACGTTAATGGGTGT 58.861 39.130 0.00 0.00 0.00 4.16
403 405 4.391155 TGACTAGCAAAACGTTAATGGGT 58.609 39.130 0.00 0.00 0.00 4.51
404 406 5.365403 TTGACTAGCAAAACGTTAATGGG 57.635 39.130 0.00 0.00 32.46 4.00
539 675 0.179129 GCGGTGCAATGAATTCTGGG 60.179 55.000 7.05 0.00 0.00 4.45
560 696 1.344763 GGAGGTCACAAGATATCGGGG 59.655 57.143 0.00 0.00 0.00 5.73
563 699 2.363680 AGCTGGAGGTCACAAGATATCG 59.636 50.000 0.00 0.00 0.00 2.92
565 701 2.703007 GGAGCTGGAGGTCACAAGATAT 59.297 50.000 8.06 0.00 43.82 1.63
566 702 2.111384 GGAGCTGGAGGTCACAAGATA 58.889 52.381 8.06 0.00 43.82 1.98
567 703 0.908198 GGAGCTGGAGGTCACAAGAT 59.092 55.000 8.06 0.00 43.82 2.40
570 706 0.108585 GTTGGAGCTGGAGGTCACAA 59.891 55.000 8.06 6.86 43.82 3.33
595 731 3.151022 GTGAGGAGGGAGGGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
596 732 2.766229 GGTGAGGAGGGAGGGAGC 60.766 72.222 0.00 0.00 0.00 4.70
597 733 2.443016 CGGTGAGGAGGGAGGGAG 60.443 72.222 0.00 0.00 0.00 4.30
598 734 4.779733 GCGGTGAGGAGGGAGGGA 62.780 72.222 0.00 0.00 0.00 4.20
628 764 1.725641 TACAGCAGGCAATCAAGTCG 58.274 50.000 0.00 0.00 0.00 4.18
656 801 1.607148 CTCCTTTCCGGCGTTTCTTTT 59.393 47.619 6.01 0.00 0.00 2.27
701 851 1.735571 CGGGTTTAAATCCAGTGACGG 59.264 52.381 17.64 0.00 0.00 4.79
811 972 1.611936 GGCTTCTTCCCTTGTGTCCTC 60.612 57.143 0.00 0.00 0.00 3.71
822 983 1.901464 TTTGGGTGCGGCTTCTTCC 60.901 57.895 0.00 0.00 0.00 3.46
944 1121 2.046217 GAACCAACCCGGCTCTCC 60.046 66.667 0.00 0.00 39.03 3.71
1242 1424 4.385146 GCGAGGTATTATTACTCGGAAAGC 59.615 45.833 14.08 0.00 37.92 3.51
1243 1425 4.615961 CGCGAGGTATTATTACTCGGAAAG 59.384 45.833 0.00 0.00 37.92 2.62
1285 1470 6.106003 GGCTCCCGATTTTATTTGATTTTGT 58.894 36.000 0.00 0.00 0.00 2.83
1286 1471 5.523552 GGGCTCCCGATTTTATTTGATTTTG 59.476 40.000 0.00 0.00 0.00 2.44
1288 1473 4.962362 AGGGCTCCCGATTTTATTTGATTT 59.038 37.500 0.00 0.00 41.95 2.17
1289 1474 4.342092 CAGGGCTCCCGATTTTATTTGATT 59.658 41.667 0.00 0.00 41.95 2.57
1290 1475 3.891366 CAGGGCTCCCGATTTTATTTGAT 59.109 43.478 0.00 0.00 41.95 2.57
1291 1476 3.287222 CAGGGCTCCCGATTTTATTTGA 58.713 45.455 0.00 0.00 41.95 2.69
1292 1477 2.223805 GCAGGGCTCCCGATTTTATTTG 60.224 50.000 0.00 0.00 41.95 2.32
1309 1494 7.072177 TCAAATCTAATTCAGTAAACGCAGG 57.928 36.000 0.00 0.00 0.00 4.85
1314 1499 8.798153 CGGCATTTCAAATCTAATTCAGTAAAC 58.202 33.333 0.00 0.00 0.00 2.01
1339 1524 1.767289 ACGCATCTCGCTATAAACCG 58.233 50.000 0.00 0.00 43.23 4.44
1372 1557 1.555533 AGGTCAGGAGAACCCGAAATC 59.444 52.381 0.00 0.00 40.87 2.17
1404 1589 3.772060 AATCGGTCGTCTACTGGTAAC 57.228 47.619 0.00 0.00 34.96 2.50
1412 1597 3.186909 CATGCAGAAAATCGGTCGTCTA 58.813 45.455 0.00 0.00 0.00 2.59
1463 1648 2.531508 GCTGAACTTGTGAAACGCTTTG 59.468 45.455 0.00 0.00 42.39 2.77
1473 1658 1.572085 CCAGGAGCGCTGAACTTGTG 61.572 60.000 18.48 0.62 0.00 3.33
1489 1678 5.667539 TCCACAGAAGTATCTTCTTCCAG 57.332 43.478 8.98 2.21 43.17 3.86
1531 1749 3.544167 CTACGCTCGGGATCGGCTG 62.544 68.421 0.00 0.00 36.95 4.85
1539 1757 3.825833 GACGATGGCTACGCTCGGG 62.826 68.421 0.00 0.00 36.74 5.14
1574 1792 2.010817 GGCGCACGAAACAAAGCAG 61.011 57.895 10.83 0.00 0.00 4.24
1637 1855 4.159879 ACTCCCACTAGTACACAGCAATAC 59.840 45.833 0.00 0.00 0.00 1.89
1640 1858 2.605257 ACTCCCACTAGTACACAGCAA 58.395 47.619 0.00 0.00 0.00 3.91
1642 1860 4.159879 ACAATACTCCCACTAGTACACAGC 59.840 45.833 0.00 0.00 34.87 4.40
1643 1861 5.916661 ACAATACTCCCACTAGTACACAG 57.083 43.478 0.00 0.00 34.87 3.66
1644 1862 5.541101 ACAACAATACTCCCACTAGTACACA 59.459 40.000 0.00 0.00 34.87 3.72
1645 1863 5.867716 CACAACAATACTCCCACTAGTACAC 59.132 44.000 0.00 0.00 34.87 2.90
1646 1864 5.046878 CCACAACAATACTCCCACTAGTACA 60.047 44.000 0.00 0.00 34.87 2.90
1647 1865 5.416947 CCACAACAATACTCCCACTAGTAC 58.583 45.833 0.00 0.00 34.87 2.73
1648 1866 4.081309 GCCACAACAATACTCCCACTAGTA 60.081 45.833 0.00 0.00 36.44 1.82
1649 1867 3.307480 GCCACAACAATACTCCCACTAGT 60.307 47.826 0.00 0.00 0.00 2.57
1650 1868 3.055094 AGCCACAACAATACTCCCACTAG 60.055 47.826 0.00 0.00 0.00 2.57
1651 1869 2.910319 AGCCACAACAATACTCCCACTA 59.090 45.455 0.00 0.00 0.00 2.74
1652 1870 1.705186 AGCCACAACAATACTCCCACT 59.295 47.619 0.00 0.00 0.00 4.00
1653 1871 2.200373 AGCCACAACAATACTCCCAC 57.800 50.000 0.00 0.00 0.00 4.61
1654 1872 2.890311 CAAAGCCACAACAATACTCCCA 59.110 45.455 0.00 0.00 0.00 4.37
1655 1873 2.231235 CCAAAGCCACAACAATACTCCC 59.769 50.000 0.00 0.00 0.00 4.30
1656 1874 3.057526 GTCCAAAGCCACAACAATACTCC 60.058 47.826 0.00 0.00 0.00 3.85
1657 1875 3.057526 GGTCCAAAGCCACAACAATACTC 60.058 47.826 0.00 0.00 0.00 2.59
1665 1883 1.686052 GTGAATGGTCCAAAGCCACAA 59.314 47.619 0.00 0.00 39.03 3.33
1677 1895 1.632589 GGGGCAAAGAAGTGAATGGT 58.367 50.000 0.00 0.00 0.00 3.55
1692 1910 2.441822 CTACTATCTGCTGCCGGGGC 62.442 65.000 2.18 1.86 42.35 5.80
1695 1913 2.231529 ACTACTACTATCTGCTGCCGG 58.768 52.381 0.00 0.00 0.00 6.13
1756 1978 3.316308 AGCTTAAAAAGATATGGCGCTGG 59.684 43.478 7.64 0.00 0.00 4.85
1785 2007 6.520792 GCATATCCAATGCAAAGTCAAATC 57.479 37.500 5.14 0.00 44.00 2.17
1986 2208 2.825532 AGTTGGAGCGTTTGCCATAAAT 59.174 40.909 0.00 0.00 44.31 1.40
2000 2222 2.620112 CGCTGGTGCCAAGTTGGAG 61.620 63.158 26.52 14.47 40.96 3.86
2055 2277 9.426837 CACATTCACCACAGAAAAATAAATGAT 57.573 29.630 0.00 0.00 0.00 2.45
2056 2278 7.384660 GCACATTCACCACAGAAAAATAAATGA 59.615 33.333 0.00 0.00 0.00 2.57
2057 2279 7.385752 AGCACATTCACCACAGAAAAATAAATG 59.614 33.333 0.00 0.00 0.00 2.32
2058 2280 7.444299 AGCACATTCACCACAGAAAAATAAAT 58.556 30.769 0.00 0.00 0.00 1.40
2059 2281 6.815089 AGCACATTCACCACAGAAAAATAAA 58.185 32.000 0.00 0.00 0.00 1.40
2060 2282 6.403866 AGCACATTCACCACAGAAAAATAA 57.596 33.333 0.00 0.00 0.00 1.40
2061 2283 6.403866 AAGCACATTCACCACAGAAAAATA 57.596 33.333 0.00 0.00 0.00 1.40
2134 2356 4.330074 GCTTGCTGAATTGTCATAGTACGT 59.670 41.667 0.00 0.00 31.85 3.57
2152 2375 2.811317 CCTCGTGAGGTCGCTTGC 60.811 66.667 7.79 0.00 43.61 4.01
2184 2407 0.985549 GCGCACAACAAAACGTCAAA 59.014 45.000 0.30 0.00 0.00 2.69
2190 2413 1.996191 TGGAAAAGCGCACAACAAAAC 59.004 42.857 11.47 0.00 0.00 2.43
2296 2685 0.108329 CTGCGGTCGGTCCAACTTAT 60.108 55.000 0.00 0.00 35.57 1.73
2297 2686 1.290955 CTGCGGTCGGTCCAACTTA 59.709 57.895 0.00 0.00 35.57 2.24
2298 2687 2.030562 CTGCGGTCGGTCCAACTT 59.969 61.111 0.00 0.00 35.57 2.66
2300 2689 4.980805 TGCTGCGGTCGGTCCAAC 62.981 66.667 0.00 0.00 35.57 3.77
2301 2690 4.980805 GTGCTGCGGTCGGTCCAA 62.981 66.667 0.00 0.00 35.57 3.53
2335 2724 9.141400 GTAATACACAACAAAAGAACCAAAACA 57.859 29.630 0.00 0.00 0.00 2.83
2353 2742 8.693542 ACGTAACCTACAAGAATGTAATACAC 57.306 34.615 0.00 0.00 41.36 2.90
2359 2748 6.594788 AAGGACGTAACCTACAAGAATGTA 57.405 37.500 0.00 0.00 41.05 2.29
2376 2765 2.809601 CCGCCAACTCGAAGGACG 60.810 66.667 2.64 5.56 44.09 4.79
2408 2798 4.830046 TGCAAATGGTAAAAGCTACCTTCA 59.170 37.500 5.75 0.00 38.39 3.02
2418 2808 7.337942 ACTTCAATGGTTTTGCAAATGGTAAAA 59.662 29.630 13.65 2.44 38.51 1.52
2453 2843 2.176045 CCACCATAAGTTTCAACCCCC 58.824 52.381 0.00 0.00 0.00 5.40
2485 2875 4.942761 AGCAATTGACCATTCACTTTGT 57.057 36.364 10.34 0.00 31.75 2.83
2561 2952 2.850130 ACCAACCGCCTACCACCA 60.850 61.111 0.00 0.00 0.00 4.17
2592 2983 5.723492 ACGAAAGTACAAACCAAGTACAC 57.277 39.130 6.30 0.00 46.88 2.90
2688 3084 4.759516 ATTTGCCAAACCAACTACTACG 57.240 40.909 0.00 0.00 0.00 3.51
2724 3153 5.241662 AGTGTTTCACAGAGATAAAGAGGC 58.758 41.667 2.80 0.00 36.74 4.70
2736 3165 8.499162 CAAAGATAAAGAGGTAGTGTTTCACAG 58.501 37.037 2.80 0.00 36.74 3.66
2783 3214 7.444183 GGTCCATCACCATCGAGAAAATATAAA 59.556 37.037 0.00 0.00 45.98 1.40
2787 3218 4.703897 GGTCCATCACCATCGAGAAAATA 58.296 43.478 0.00 0.00 45.98 1.40
2931 3363 3.117512 ACATTTTTCCTGTGTCTGGGTCT 60.118 43.478 0.00 0.00 0.00 3.85
3058 3490 2.092323 GTTTCCGCTTAAGCTGGGAAT 58.908 47.619 27.26 0.00 39.26 3.01
3062 3494 2.922335 GCAAAGTTTCCGCTTAAGCTGG 60.922 50.000 24.33 24.06 39.32 4.85
3063 3495 2.319472 GCAAAGTTTCCGCTTAAGCTG 58.681 47.619 24.33 18.42 39.32 4.24
3086 3518 5.389859 TTCCGACTACGTATCTTTTTCCA 57.610 39.130 0.00 0.00 37.88 3.53
3099 3531 3.552294 GCAGAAACAGCTATTCCGACTAC 59.448 47.826 7.59 0.00 0.00 2.73
3142 3574 9.169468 GACACACAGTTACATAAACAGAAATTG 57.831 33.333 0.00 0.00 40.83 2.32
3213 3645 7.121907 GGAGCTAGACAGGAAAAGAATTGAATT 59.878 37.037 0.00 0.00 0.00 2.17
3214 3646 6.601217 GGAGCTAGACAGGAAAAGAATTGAAT 59.399 38.462 0.00 0.00 0.00 2.57
3215 3647 5.940470 GGAGCTAGACAGGAAAAGAATTGAA 59.060 40.000 0.00 0.00 0.00 2.69
3216 3648 5.491982 GGAGCTAGACAGGAAAAGAATTGA 58.508 41.667 0.00 0.00 0.00 2.57
3217 3649 4.637977 GGGAGCTAGACAGGAAAAGAATTG 59.362 45.833 0.00 0.00 0.00 2.32
3250 3682 3.257393 GTCAGCTCAATGTGGTAGACAG 58.743 50.000 10.04 0.00 38.23 3.51
3251 3683 2.632512 TGTCAGCTCAATGTGGTAGACA 59.367 45.455 12.17 12.17 39.53 3.41
3252 3684 3.319137 TGTCAGCTCAATGTGGTAGAC 57.681 47.619 0.00 8.80 0.00 2.59
3254 3686 5.048504 ACAAAATGTCAGCTCAATGTGGTAG 60.049 40.000 0.00 0.00 0.00 3.18
3255 3687 4.826733 ACAAAATGTCAGCTCAATGTGGTA 59.173 37.500 0.00 0.00 0.00 3.25
3257 3689 4.247267 ACAAAATGTCAGCTCAATGTGG 57.753 40.909 0.00 0.00 0.00 4.17
3336 4095 5.520288 ACATGACATTACATCGCAAGTACTC 59.480 40.000 0.00 0.00 39.48 2.59
3344 4103 6.589830 ACTAAAGACATGACATTACATCGC 57.410 37.500 0.00 0.00 0.00 4.58
3865 4710 3.442977 AGTATGTAAGCGACGAACTCCTT 59.557 43.478 0.00 0.00 0.00 3.36
4027 4872 3.944015 GTGGATCAGGACAGAAAATCCAG 59.056 47.826 2.73 0.00 44.83 3.86
4049 4894 0.615331 TAGCACTGGGAGCTTTCAGG 59.385 55.000 17.67 10.08 43.25 3.86
4328 5173 2.985896 AGCGAGTTAATAGCCTGCAAA 58.014 42.857 0.00 0.00 0.00 3.68
4397 5242 2.636830 CTGCGATCCTCAATCACCTTT 58.363 47.619 0.00 0.00 33.65 3.11
4424 5269 4.219944 AGAATGATGCTGCACACTGAATTT 59.780 37.500 3.57 0.00 0.00 1.82
4469 5314 6.170506 TCGAACATTTGAGCTAAGGTTGTAT 58.829 36.000 4.12 0.00 0.00 2.29
4693 5538 2.038557 ACGACAACACTAAGAAGCCCAT 59.961 45.455 0.00 0.00 0.00 4.00
4874 5719 1.298859 GACACTGTGGGATGTTCGCC 61.299 60.000 13.09 0.00 0.00 5.54
4876 5721 1.626654 GCGACACTGTGGGATGTTCG 61.627 60.000 13.09 11.68 0.00 3.95
4943 5791 5.809001 ACTTGAAGCTTGATGGTCTCATTA 58.191 37.500 2.10 0.00 32.72 1.90
4967 5815 3.370315 GCCTGTTGATCTTCACCTCATCT 60.370 47.826 0.00 0.00 0.00 2.90
5030 5878 0.527817 GTATGCGGTTCCTCTCACGG 60.528 60.000 0.00 0.00 0.00 4.94
5066 5914 3.267860 GCAGCCCTCGCAGATTCG 61.268 66.667 0.00 0.00 37.52 3.34
5105 5953 1.081892 CCAGAATTGTCACAGCCTCG 58.918 55.000 0.00 0.00 0.00 4.63
5117 5965 1.558756 CTCCTGCAGTCCTCCAGAATT 59.441 52.381 13.81 0.00 0.00 2.17
5142 5990 4.094590 CCTGCTTGCAAAAGACTCTGATAG 59.905 45.833 0.00 0.00 0.00 2.08
5153 6001 2.563798 CCCGCTCCTGCTTGCAAAA 61.564 57.895 0.00 0.00 36.97 2.44
5180 6028 2.282180 GCGTCAAGGGCCAAGGAA 60.282 61.111 6.18 0.00 0.00 3.36
5228 6076 1.867698 GCTTCATAGAGCTGGCGACTC 60.868 57.143 0.00 0.00 39.57 3.36
5387 6235 1.153289 CGAAGGGATGTGGCTCTGG 60.153 63.158 0.00 0.00 0.00 3.86
5450 6298 2.728318 GACGAAACGGTTCAACTACCTC 59.272 50.000 14.64 0.00 35.97 3.85
5546 6395 5.725362 AGCAGAAGAATCAACAGGTACTAC 58.275 41.667 0.00 0.00 36.02 2.73
5612 6461 3.005155 GCATTCATTACCCAGCTCAATCC 59.995 47.826 0.00 0.00 0.00 3.01
5633 6482 1.053424 TATCCCAGAATGTACCCGGC 58.947 55.000 0.00 0.00 0.00 6.13
5668 6520 8.112822 TCCCAAATATTATTCCTGACAGAACAA 58.887 33.333 3.32 0.00 0.00 2.83
5733 6585 8.515414 AGAAGAATTTAGGATTCAAGGAAAACG 58.485 33.333 2.07 0.00 0.00 3.60
5774 6626 2.076100 CATAAAGCACGCTGACTCCAA 58.924 47.619 0.00 0.00 0.00 3.53
5794 6647 2.726066 GCACGTTTCTAGAATGCAGTGC 60.726 50.000 25.05 25.05 45.03 4.40
5829 6682 6.992063 AAGAAACACTCCAATAGCATACTG 57.008 37.500 0.00 0.00 0.00 2.74
5830 6683 7.121315 GGAAAAGAAACACTCCAATAGCATACT 59.879 37.037 0.00 0.00 0.00 2.12
5855 6708 5.614308 TGATATGTACTCAGATTGCAAGGG 58.386 41.667 4.94 0.00 0.00 3.95
5887 6740 3.370315 GGAGATGCCCTCATACATCATCC 60.370 52.174 5.84 5.96 44.16 3.51
5898 6751 1.530183 GGCCATTGGAGATGCCCTC 60.530 63.158 6.95 0.00 41.22 4.30
5903 6756 1.825191 CGGGTGGCCATTGGAGATG 60.825 63.158 9.72 0.00 0.00 2.90
5916 6769 0.897863 TGGGAGGAAATTTGCGGGTG 60.898 55.000 3.87 0.00 0.00 4.61
5919 6772 1.185315 ATGTGGGAGGAAATTTGCGG 58.815 50.000 3.87 0.00 0.00 5.69
5921 6774 5.519927 CGAATAAATGTGGGAGGAAATTTGC 59.480 40.000 0.68 0.68 0.00 3.68
5935 6788 5.363868 TGATCCTCTCTCCACGAATAAATGT 59.636 40.000 0.00 0.00 0.00 2.71
5937 6790 5.600484 ACTGATCCTCTCTCCACGAATAAAT 59.400 40.000 0.00 0.00 0.00 1.40
5939 6792 4.537751 ACTGATCCTCTCTCCACGAATAA 58.462 43.478 0.00 0.00 0.00 1.40
5940 6793 4.138290 GACTGATCCTCTCTCCACGAATA 58.862 47.826 0.00 0.00 0.00 1.75
5941 6794 2.955660 GACTGATCCTCTCTCCACGAAT 59.044 50.000 0.00 0.00 0.00 3.34
5943 6796 1.562008 AGACTGATCCTCTCTCCACGA 59.438 52.381 0.00 0.00 0.00 4.35
5944 6797 1.675483 CAGACTGATCCTCTCTCCACG 59.325 57.143 0.00 0.00 0.00 4.94
5950 6803 0.383949 GTCCGCAGACTGATCCTCTC 59.616 60.000 6.65 0.00 40.10 3.20
5963 6817 2.823593 CCCGCATCATTGTCCGCA 60.824 61.111 0.00 0.00 0.00 5.69
5964 6818 2.513666 TCCCGCATCATTGTCCGC 60.514 61.111 0.00 0.00 0.00 5.54
6035 6889 4.223659 GCCGTGTTTGTACGATTTTCATT 58.776 39.130 0.00 0.00 46.46 2.57
6042 6896 0.108520 ATCCGCCGTGTTTGTACGAT 60.109 50.000 0.00 0.00 46.46 3.73
6056 6910 5.636121 TGTAATCCGTACATATGAAATCCGC 59.364 40.000 10.38 0.00 37.81 5.54
6068 6922 5.412904 TGTTTGCATGATTGTAATCCGTACA 59.587 36.000 0.00 0.00 41.10 2.90
6069 6923 5.874831 TGTTTGCATGATTGTAATCCGTAC 58.125 37.500 0.00 0.00 34.50 3.67
6086 6941 0.991344 CGAAAATCCGCCATGTTTGC 59.009 50.000 0.00 0.00 0.00 3.68
6090 6945 2.980568 TCTAACGAAAATCCGCCATGT 58.019 42.857 0.00 0.00 0.00 3.21
6095 6950 5.854338 TGTTCAAAATCTAACGAAAATCCGC 59.146 36.000 0.00 0.00 0.00 5.54
6130 6988 1.302366 GGTCGGGTCAGAACGTTTTT 58.698 50.000 0.46 0.00 0.00 1.94
6134 6992 0.540365 TTAGGGTCGGGTCAGAACGT 60.540 55.000 0.00 0.00 0.00 3.99
6139 6997 1.856629 TAGGTTTAGGGTCGGGTCAG 58.143 55.000 0.00 0.00 0.00 3.51
6174 7032 1.337817 CGACAAGGACTTCGACGCTG 61.338 60.000 0.00 0.00 37.43 5.18
6175 7033 1.081376 CGACAAGGACTTCGACGCT 60.081 57.895 0.00 0.00 37.43 5.07
6176 7034 1.335697 GACGACAAGGACTTCGACGC 61.336 60.000 0.00 0.00 38.63 5.19
6177 7035 0.728466 GGACGACAAGGACTTCGACG 60.728 60.000 0.00 0.00 38.63 5.12
6178 7036 0.597072 AGGACGACAAGGACTTCGAC 59.403 55.000 0.00 0.00 38.63 4.20
6179 7037 0.879765 GAGGACGACAAGGACTTCGA 59.120 55.000 0.00 0.00 38.63 3.71
6180 7038 0.109226 GGAGGACGACAAGGACTTCG 60.109 60.000 0.00 0.00 41.14 3.79
6181 7039 0.966920 TGGAGGACGACAAGGACTTC 59.033 55.000 0.00 0.00 0.00 3.01
6185 7043 1.320344 CGGATGGAGGACGACAAGGA 61.320 60.000 0.00 0.00 0.00 3.36
6223 7081 0.716108 CACTTCATCGGTCTTGTCGC 59.284 55.000 0.00 0.00 0.00 5.19
6224 7082 2.347697 TCACTTCATCGGTCTTGTCG 57.652 50.000 0.00 0.00 0.00 4.35
6234 7092 0.723981 GACCGCAGCTTCACTTCATC 59.276 55.000 0.00 0.00 0.00 2.92
6250 7108 2.423446 ACTCTTCCTCGTAGGAGACC 57.577 55.000 13.99 0.00 46.73 3.85
6275 7133 2.827642 GGTCGATCCGTCTCCCGT 60.828 66.667 0.00 0.00 33.66 5.28
6276 7134 3.593794 GGGTCGATCCGTCTCCCG 61.594 72.222 0.00 0.00 37.00 5.14
6279 7137 0.249073 CATGTGGGTCGATCCGTCTC 60.249 60.000 10.84 1.20 37.00 3.36
6316 7174 1.286260 GTCGATAGCTACGCCCCTG 59.714 63.158 0.00 0.00 0.00 4.45
6317 7175 1.902432 GGTCGATAGCTACGCCCCT 60.902 63.158 0.00 0.00 0.00 4.79
6318 7176 1.902432 AGGTCGATAGCTACGCCCC 60.902 63.158 10.70 11.49 28.63 5.80
6319 7177 1.286260 CAGGTCGATAGCTACGCCC 59.714 63.158 16.93 13.00 0.00 6.13
6320 7178 1.371881 GCAGGTCGATAGCTACGCC 60.372 63.158 0.00 8.05 0.00 5.68
6321 7179 0.386226 GAGCAGGTCGATAGCTACGC 60.386 60.000 8.84 0.00 39.02 4.42
6322 7180 3.757623 GAGCAGGTCGATAGCTACG 57.242 57.895 8.84 2.30 39.02 3.51
6335 7193 1.813178 TCAACTAGTCACCTCGAGCAG 59.187 52.381 6.99 0.98 0.00 4.24
6336 7194 1.905637 TCAACTAGTCACCTCGAGCA 58.094 50.000 6.99 0.00 0.00 4.26
6337 7195 3.512033 ATTCAACTAGTCACCTCGAGC 57.488 47.619 6.99 0.00 0.00 5.03
6338 7196 4.177026 CCAATTCAACTAGTCACCTCGAG 58.823 47.826 5.13 5.13 0.00 4.04
6339 7197 3.616560 GCCAATTCAACTAGTCACCTCGA 60.617 47.826 0.00 0.00 0.00 4.04
6340 7198 2.673368 GCCAATTCAACTAGTCACCTCG 59.327 50.000 0.00 0.00 0.00 4.63
6341 7199 3.437049 GTGCCAATTCAACTAGTCACCTC 59.563 47.826 0.00 0.00 0.00 3.85
6342 7200 3.412386 GTGCCAATTCAACTAGTCACCT 58.588 45.455 0.00 0.00 0.00 4.00
6343 7201 2.159627 CGTGCCAATTCAACTAGTCACC 59.840 50.000 0.00 0.00 0.00 4.02
6344 7202 2.412847 GCGTGCCAATTCAACTAGTCAC 60.413 50.000 0.00 0.00 0.00 3.67
6345 7203 1.804151 GCGTGCCAATTCAACTAGTCA 59.196 47.619 0.00 0.00 0.00 3.41
6346 7204 1.201921 CGCGTGCCAATTCAACTAGTC 60.202 52.381 0.00 0.00 0.00 2.59
6347 7205 0.796312 CGCGTGCCAATTCAACTAGT 59.204 50.000 0.00 0.00 0.00 2.57
6348 7206 0.796312 ACGCGTGCCAATTCAACTAG 59.204 50.000 12.93 0.00 0.00 2.57
6349 7207 1.996898 CTACGCGTGCCAATTCAACTA 59.003 47.619 24.59 0.00 0.00 2.24
6350 7208 0.796312 CTACGCGTGCCAATTCAACT 59.204 50.000 24.59 0.00 0.00 3.16
6351 7209 0.793104 GCTACGCGTGCCAATTCAAC 60.793 55.000 24.59 0.00 0.00 3.18
6352 7210 1.499949 GCTACGCGTGCCAATTCAA 59.500 52.632 24.59 0.00 0.00 2.69
6353 7211 3.173853 GCTACGCGTGCCAATTCA 58.826 55.556 24.59 0.00 0.00 2.57
6365 7223 0.385473 CTTTGTGTTTGGCGGCTACG 60.385 55.000 11.43 0.00 44.63 3.51
6366 7224 0.948678 TCTTTGTGTTTGGCGGCTAC 59.051 50.000 11.43 9.18 0.00 3.58
6367 7225 1.606668 CTTCTTTGTGTTTGGCGGCTA 59.393 47.619 11.43 0.00 0.00 3.93
6368 7226 0.385390 CTTCTTTGTGTTTGGCGGCT 59.615 50.000 11.43 0.00 0.00 5.52
6369 7227 1.215014 GCTTCTTTGTGTTTGGCGGC 61.215 55.000 0.00 0.00 0.00 6.53
6370 7228 0.385390 AGCTTCTTTGTGTTTGGCGG 59.615 50.000 0.00 0.00 0.00 6.13
6371 7229 1.065401 TCAGCTTCTTTGTGTTTGGCG 59.935 47.619 0.00 0.00 0.00 5.69
6372 7230 2.463876 GTCAGCTTCTTTGTGTTTGGC 58.536 47.619 0.00 0.00 0.00 4.52
6373 7231 2.426738 TGGTCAGCTTCTTTGTGTTTGG 59.573 45.455 0.00 0.00 0.00 3.28
6374 7232 3.489738 CCTGGTCAGCTTCTTTGTGTTTG 60.490 47.826 0.00 0.00 0.00 2.93
6375 7233 2.689983 CCTGGTCAGCTTCTTTGTGTTT 59.310 45.455 0.00 0.00 0.00 2.83
6376 7234 2.092429 TCCTGGTCAGCTTCTTTGTGTT 60.092 45.455 0.00 0.00 0.00 3.32
6377 7235 1.490490 TCCTGGTCAGCTTCTTTGTGT 59.510 47.619 0.00 0.00 0.00 3.72
6378 7236 2.260844 TCCTGGTCAGCTTCTTTGTG 57.739 50.000 0.00 0.00 0.00 3.33
6379 7237 2.439507 TCTTCCTGGTCAGCTTCTTTGT 59.560 45.455 0.00 0.00 0.00 2.83
6380 7238 3.131709 TCTTCCTGGTCAGCTTCTTTG 57.868 47.619 0.00 0.00 0.00 2.77
6381 7239 3.864789 TTCTTCCTGGTCAGCTTCTTT 57.135 42.857 0.00 0.00 0.00 2.52
6382 7240 3.497584 CCTTTCTTCCTGGTCAGCTTCTT 60.498 47.826 0.00 0.00 0.00 2.52
6383 7241 2.039613 CCTTTCTTCCTGGTCAGCTTCT 59.960 50.000 0.00 0.00 0.00 2.85
6384 7242 2.224646 ACCTTTCTTCCTGGTCAGCTTC 60.225 50.000 0.00 0.00 0.00 3.86
6385 7243 1.777272 ACCTTTCTTCCTGGTCAGCTT 59.223 47.619 0.00 0.00 0.00 3.74
6386 7244 1.439543 ACCTTTCTTCCTGGTCAGCT 58.560 50.000 0.00 0.00 0.00 4.24
6387 7245 2.278332 AACCTTTCTTCCTGGTCAGC 57.722 50.000 0.00 0.00 32.98 4.26
6388 7246 4.068599 GAGAAACCTTTCTTCCTGGTCAG 58.931 47.826 1.85 0.00 46.84 3.51
6389 7247 3.181443 GGAGAAACCTTTCTTCCTGGTCA 60.181 47.826 1.85 0.00 46.84 4.02
6390 7248 3.413327 GGAGAAACCTTTCTTCCTGGTC 58.587 50.000 1.85 0.00 46.84 4.02
6391 7249 2.224548 CGGAGAAACCTTTCTTCCTGGT 60.225 50.000 1.85 0.00 46.84 4.00
6392 7250 2.427506 CGGAGAAACCTTTCTTCCTGG 58.572 52.381 1.85 0.00 46.84 4.45
6393 7251 2.038557 TCCGGAGAAACCTTTCTTCCTG 59.961 50.000 0.00 2.84 46.84 3.86
6394 7252 2.335933 TCCGGAGAAACCTTTCTTCCT 58.664 47.619 0.00 0.00 46.84 3.36
6395 7253 2.853235 TCCGGAGAAACCTTTCTTCC 57.147 50.000 0.00 4.58 46.84 3.46
6405 7263 1.202879 ACCATGCTGTTTCCGGAGAAA 60.203 47.619 3.34 0.00 39.70 2.52
6406 7264 0.400213 ACCATGCTGTTTCCGGAGAA 59.600 50.000 3.34 0.00 0.00 2.87
6407 7265 0.036388 GACCATGCTGTTTCCGGAGA 60.036 55.000 3.34 0.00 0.00 3.71
6408 7266 1.026718 GGACCATGCTGTTTCCGGAG 61.027 60.000 3.34 0.00 0.00 4.63
6409 7267 1.002624 GGACCATGCTGTTTCCGGA 60.003 57.895 0.00 0.00 0.00 5.14
6410 7268 2.046285 GGGACCATGCTGTTTCCGG 61.046 63.158 0.00 0.00 0.00 5.14
6411 7269 3.590824 GGGACCATGCTGTTTCCG 58.409 61.111 0.00 0.00 0.00 4.30
6424 7282 0.801067 CTCGATTTGTCGTCGGGGAC 60.801 60.000 0.00 0.55 39.45 4.46
6425 7283 1.509463 CTCGATTTGTCGTCGGGGA 59.491 57.895 0.00 0.00 39.45 4.81
6426 7284 2.165301 GCTCGATTTGTCGTCGGGG 61.165 63.158 0.00 0.00 39.87 5.73
6427 7285 2.165301 GGCTCGATTTGTCGTCGGG 61.165 63.158 0.00 0.00 42.31 5.14
6428 7286 0.806102 ATGGCTCGATTTGTCGTCGG 60.806 55.000 0.00 0.00 39.45 4.79
6429 7287 0.572590 GATGGCTCGATTTGTCGTCG 59.427 55.000 0.00 0.00 40.30 5.12
6430 7288 1.640428 TGATGGCTCGATTTGTCGTC 58.360 50.000 0.00 0.00 0.00 4.20
6431 7289 2.093306 TTGATGGCTCGATTTGTCGT 57.907 45.000 0.00 0.00 0.00 4.34
6432 7290 2.032549 GGATTGATGGCTCGATTTGTCG 60.033 50.000 0.00 0.00 0.00 4.35
6433 7291 3.209410 AGGATTGATGGCTCGATTTGTC 58.791 45.455 0.00 0.00 0.00 3.18
6434 7292 3.287867 AGGATTGATGGCTCGATTTGT 57.712 42.857 0.00 0.00 0.00 2.83
6435 7293 4.220533 GAAGGATTGATGGCTCGATTTG 57.779 45.455 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.