Multiple sequence alignment - TraesCS2A01G364000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G364000 chr2A 100.000 2930 0 0 818 3747 607908192 607911121 0.000000e+00 5411.0
1 TraesCS2A01G364000 chr2A 100.000 410 0 0 1 410 607907375 607907784 0.000000e+00 758.0
2 TraesCS2A01G364000 chr2D 90.287 2440 129 36 819 3200 467057753 467060142 0.000000e+00 3094.0
3 TraesCS2A01G364000 chr2D 85.747 435 35 17 1 410 467057014 467057446 5.750000e-118 435.0
4 TraesCS2A01G364000 chr2B 88.862 2092 135 38 977 2999 545755410 545757472 0.000000e+00 2483.0
5 TraesCS2A01G364000 chr2B 79.911 448 58 18 1404 1824 9921616 9922058 2.190000e-77 300.0
6 TraesCS2A01G364000 chr2B 91.979 187 12 3 219 402 545754685 545754871 3.710000e-65 259.0
7 TraesCS2A01G364000 chr6B 87.604 839 66 24 947 1763 685151335 685152157 0.000000e+00 939.0
8 TraesCS2A01G364000 chr6B 83.748 523 66 10 2267 2775 685152556 685153073 9.420000e-131 477.0
9 TraesCS2A01G364000 chr6D 87.381 840 75 21 952 1771 451098656 451099484 0.000000e+00 935.0
10 TraesCS2A01G364000 chr6D 84.542 524 65 13 2267 2777 451099872 451100392 4.320000e-139 505.0
11 TraesCS2A01G364000 chr6A 86.909 825 76 19 965 1764 596744660 596745477 0.000000e+00 896.0
12 TraesCS2A01G364000 chr6A 82.543 527 61 17 2267 2777 596745869 596746380 5.750000e-118 435.0
13 TraesCS2A01G364000 chr5D 95.437 263 10 2 3390 3651 503325691 503325430 5.790000e-113 418.0
14 TraesCS2A01G364000 chr5D 95.057 263 11 2 3390 3651 6241103 6241364 2.690000e-111 412.0
15 TraesCS2A01G364000 chr5D 94.361 266 13 2 3387 3651 444306280 444306544 1.250000e-109 407.0
16 TraesCS2A01G364000 chr3D 95.437 263 10 2 3390 3651 24160351 24160090 5.790000e-113 418.0
17 TraesCS2A01G364000 chr3B 95.437 263 10 2 3390 3651 201487907 201487646 5.790000e-113 418.0
18 TraesCS2A01G364000 chr3B 95.057 263 11 2 3390 3651 201484634 201484373 2.690000e-111 412.0
19 TraesCS2A01G364000 chr3A 95.437 263 10 2 3390 3651 524023369 524023108 5.790000e-113 418.0
20 TraesCS2A01G364000 chrUn 94.677 263 12 2 3390 3651 423004132 423003871 1.250000e-109 407.0
21 TraesCS2A01G364000 chrUn 91.837 49 3 1 851 899 117191541 117191494 2.420000e-07 67.6
22 TraesCS2A01G364000 chr1D 94.677 263 12 2 3390 3651 254471598 254471337 1.250000e-109 407.0
23 TraesCS2A01G364000 chr1B 78.547 592 81 25 1212 1764 490598163 490598747 7.700000e-92 348.0
24 TraesCS2A01G364000 chr7B 84.896 192 23 6 1637 1824 348045198 348045387 4.940000e-44 189.0
25 TraesCS2A01G364000 chr7B 81.545 233 34 9 1637 1862 27649285 27649515 2.300000e-42 183.0
26 TraesCS2A01G364000 chr5B 82.812 192 27 6 1637 1824 680845857 680846046 2.310000e-37 167.0
27 TraesCS2A01G364000 chr4B 80.488 164 13 16 822 979 69135844 69135694 1.420000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G364000 chr2A 607907375 607911121 3746 False 3084.5 5411 100.0000 1 3747 2 chr2A.!!$F1 3746
1 TraesCS2A01G364000 chr2D 467057014 467060142 3128 False 1764.5 3094 88.0170 1 3200 2 chr2D.!!$F1 3199
2 TraesCS2A01G364000 chr2B 545754685 545757472 2787 False 1371.0 2483 90.4205 219 2999 2 chr2B.!!$F2 2780
3 TraesCS2A01G364000 chr6B 685151335 685153073 1738 False 708.0 939 85.6760 947 2775 2 chr6B.!!$F1 1828
4 TraesCS2A01G364000 chr6D 451098656 451100392 1736 False 720.0 935 85.9615 952 2777 2 chr6D.!!$F1 1825
5 TraesCS2A01G364000 chr6A 596744660 596746380 1720 False 665.5 896 84.7260 965 2777 2 chr6A.!!$F1 1812
6 TraesCS2A01G364000 chr3B 201484373 201487907 3534 True 415.0 418 95.2470 3390 3651 2 chr3B.!!$R1 261
7 TraesCS2A01G364000 chr1B 490598163 490598747 584 False 348.0 348 78.5470 1212 1764 1 chr1B.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 208 0.250989 AAATCGGTTTCGGCCCTCAA 60.251 50.000 0.0 0.0 36.95 3.02 F
206 209 0.250989 AATCGGTTTCGGCCCTCAAA 60.251 50.000 0.0 0.0 36.95 2.69 F
1330 1682 1.151899 TCACCCAGTAAGCACCCCT 60.152 57.895 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1684 0.247460 CCGACAGGAAGAGATGTGCA 59.753 55.0 0.0 0.0 41.02 4.57 R
1333 1685 0.247736 ACCGACAGGAAGAGATGTGC 59.752 55.0 0.0 0.0 41.02 4.57 R
3206 3792 0.031111 TACCCCTGATAGTGGCAGCT 60.031 55.0 0.0 0.0 32.06 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.229304 TCTTGAAACAAAGACCAGTCCA 57.771 40.909 0.00 0.00 31.19 4.02
76 77 5.946486 AGACCAGTCCAGAAGAAAGAAAAT 58.054 37.500 0.00 0.00 0.00 1.82
77 78 6.000840 AGACCAGTCCAGAAGAAAGAAAATC 58.999 40.000 0.00 0.00 0.00 2.17
83 84 5.049405 GTCCAGAAGAAAGAAAATCGAGCAA 60.049 40.000 0.00 0.00 0.00 3.91
89 90 6.566197 AGAAAGAAAATCGAGCAAACAGAT 57.434 33.333 0.00 0.00 0.00 2.90
90 91 6.606768 AGAAAGAAAATCGAGCAAACAGATC 58.393 36.000 0.00 0.00 0.00 2.75
118 119 4.038080 CCAAACGGGCGAACAGGC 62.038 66.667 0.00 0.00 45.91 4.85
154 155 2.705821 CGAGCGGAGAGAACAGGCT 61.706 63.158 0.00 0.00 36.51 4.58
167 169 3.254657 AGAACAGGCTAGCGATGAGTATC 59.745 47.826 21.49 14.05 0.00 2.24
193 196 1.734163 CTTCGCCCTGTAAAATCGGT 58.266 50.000 0.00 0.00 0.00 4.69
195 198 2.188062 TCGCCCTGTAAAATCGGTTT 57.812 45.000 0.00 0.00 0.00 3.27
196 199 2.078392 TCGCCCTGTAAAATCGGTTTC 58.922 47.619 0.00 0.00 0.00 2.78
199 202 1.131693 CCCTGTAAAATCGGTTTCGGC 59.868 52.381 0.00 0.00 36.95 5.54
201 204 1.131693 CTGTAAAATCGGTTTCGGCCC 59.868 52.381 0.00 0.00 36.95 5.80
202 205 1.271488 TGTAAAATCGGTTTCGGCCCT 60.271 47.619 0.00 0.00 36.95 5.19
205 208 0.250989 AAATCGGTTTCGGCCCTCAA 60.251 50.000 0.00 0.00 36.95 3.02
206 209 0.250989 AATCGGTTTCGGCCCTCAAA 60.251 50.000 0.00 0.00 36.95 2.69
305 329 1.677633 CGCCCTTTCCCAAACCGAT 60.678 57.895 0.00 0.00 0.00 4.18
314 339 1.571773 CCCAAACCGATCCTCCCCTT 61.572 60.000 0.00 0.00 0.00 3.95
350 376 3.023949 GCAGCATCTCGGACCCACT 62.024 63.158 0.00 0.00 0.00 4.00
834 875 2.911143 CCATTCCCCTCTCCACCG 59.089 66.667 0.00 0.00 0.00 4.94
953 995 1.223763 GGTTTCTCGATCCACCCCC 59.776 63.158 0.00 0.00 0.00 5.40
1330 1682 1.151899 TCACCCAGTAAGCACCCCT 60.152 57.895 0.00 0.00 0.00 4.79
1332 1684 1.161113 ACCCAGTAAGCACCCCTCT 59.839 57.895 0.00 0.00 0.00 3.69
1333 1685 1.201429 ACCCAGTAAGCACCCCTCTG 61.201 60.000 0.00 0.00 0.00 3.35
1334 1686 1.078143 CCAGTAAGCACCCCTCTGC 60.078 63.158 0.00 0.00 37.44 4.26
1335 1687 1.679311 CAGTAAGCACCCCTCTGCA 59.321 57.895 0.00 0.00 39.86 4.41
1337 1689 1.127567 AGTAAGCACCCCTCTGCACA 61.128 55.000 0.00 0.00 39.86 4.57
1338 1690 0.035056 GTAAGCACCCCTCTGCACAT 60.035 55.000 0.00 0.00 39.86 3.21
1340 1692 1.495579 AAGCACCCCTCTGCACATCT 61.496 55.000 0.00 0.00 39.86 2.90
1346 1713 1.202330 CCCTCTGCACATCTCTTCCT 58.798 55.000 0.00 0.00 0.00 3.36
1364 1733 2.024273 TCCTGTCGGTCCTCTTCCTTAT 60.024 50.000 0.00 0.00 0.00 1.73
1408 1793 1.029681 GTTTGGGTGGGTCAACAGAC 58.970 55.000 0.00 0.00 0.00 3.51
1474 1859 2.764128 GAGCACCTCGGGATCCCA 60.764 66.667 30.42 16.14 35.37 4.37
1480 1865 1.231641 CCTCGGGATCCCAGACTCT 59.768 63.158 30.42 0.00 35.37 3.24
1566 1951 2.954020 ATCGGCGACACTGGTATGCG 62.954 60.000 13.76 0.00 31.21 4.73
1606 1993 3.694043 TTATTGTGGTCTGCTGCACTA 57.306 42.857 0.00 0.00 0.00 2.74
1631 2058 7.319646 AGTCATCTCTGTTTCTTACATGTCTC 58.680 38.462 0.00 0.00 35.85 3.36
1633 2060 7.763528 GTCATCTCTGTTTCTTACATGTCTCAT 59.236 37.037 0.00 0.00 35.85 2.90
1637 2064 4.910195 TGTTTCTTACATGTCTCATGGCT 58.090 39.130 0.00 0.00 0.00 4.75
1639 2066 4.824479 TTCTTACATGTCTCATGGCTGA 57.176 40.909 0.00 5.94 0.00 4.26
1640 2067 4.128925 TCTTACATGTCTCATGGCTGAC 57.871 45.455 0.00 0.24 0.00 3.51
1641 2068 2.584492 TACATGTCTCATGGCTGACG 57.416 50.000 0.00 0.00 36.10 4.35
1643 2070 1.520120 ATGTCTCATGGCTGACGCG 60.520 57.895 3.53 3.53 36.10 6.01
1645 2072 3.381983 TCTCATGGCTGACGCGGT 61.382 61.111 12.47 0.00 36.88 5.68
1764 2206 3.000727 CAAGACCGTTGACAAGGTATCC 58.999 50.000 7.09 0.00 41.51 2.59
1774 2216 4.009675 TGACAAGGTATCCTGCATTGTTC 58.990 43.478 1.47 0.00 40.29 3.18
1881 2329 2.810274 CCGATTGCAGGGATGATTGTAG 59.190 50.000 0.00 0.00 0.00 2.74
1925 2385 4.095483 AGCAACATAAATAGTCAGCTGCAC 59.905 41.667 9.47 8.49 31.72 4.57
1926 2386 4.731773 GCAACATAAATAGTCAGCTGCACC 60.732 45.833 9.47 0.00 0.00 5.01
1927 2387 3.545703 ACATAAATAGTCAGCTGCACCC 58.454 45.455 9.47 0.00 0.00 4.61
1928 2388 3.054434 ACATAAATAGTCAGCTGCACCCA 60.054 43.478 9.47 0.23 0.00 4.51
1929 2389 2.584835 AAATAGTCAGCTGCACCCAA 57.415 45.000 9.47 0.00 0.00 4.12
1930 2390 2.814805 AATAGTCAGCTGCACCCAAT 57.185 45.000 9.47 0.00 0.00 3.16
1931 2391 2.814805 ATAGTCAGCTGCACCCAATT 57.185 45.000 9.47 0.00 0.00 2.32
1932 2392 2.113860 TAGTCAGCTGCACCCAATTC 57.886 50.000 9.47 0.00 0.00 2.17
1933 2393 0.403271 AGTCAGCTGCACCCAATTCT 59.597 50.000 9.47 0.00 0.00 2.40
1934 2394 0.807496 GTCAGCTGCACCCAATTCTC 59.193 55.000 9.47 0.00 0.00 2.87
1935 2395 0.401356 TCAGCTGCACCCAATTCTCA 59.599 50.000 9.47 0.00 0.00 3.27
1936 2396 1.202915 TCAGCTGCACCCAATTCTCAA 60.203 47.619 9.47 0.00 0.00 3.02
1995 2455 5.106475 TGGACGATTTGGTAGTTATTGTTGC 60.106 40.000 0.00 0.00 0.00 4.17
2204 2708 4.808414 TGAGTCCAACAGATCTACAAGG 57.192 45.455 0.00 0.00 0.00 3.61
2280 2803 1.519719 CCCTGTACTCTGAGCTGGC 59.480 63.158 4.19 0.00 0.00 4.85
2403 2942 5.130311 TCAGCTTAAGCCATGTGGAGTATTA 59.870 40.000 23.71 0.00 43.38 0.98
2507 3046 8.870116 ACATGTATCAGTATGGTAGCTAATGAA 58.130 33.333 0.00 0.00 28.16 2.57
2563 3103 2.489938 TAGAAATGCAAGAGCCGGTT 57.510 45.000 1.90 0.00 41.13 4.44
2602 3142 4.160329 TGAGGTACATGAACTCCTTCACT 58.840 43.478 0.00 0.00 39.28 3.41
2770 3310 6.899393 TTGTGTTTCAAGGATCTGCTTATT 57.101 33.333 0.00 0.00 0.00 1.40
2777 3317 5.018809 TCAAGGATCTGCTTATTTTGCCTT 58.981 37.500 0.00 0.00 35.03 4.35
2780 3320 5.206587 AGGATCTGCTTATTTTGCCTTCAT 58.793 37.500 0.00 0.00 0.00 2.57
2786 3326 6.437162 TCTGCTTATTTTGCCTTCATTAGGTT 59.563 34.615 0.00 0.00 46.61 3.50
2800 3340 3.375647 TTAGGTTTTATCTGGCACCCC 57.624 47.619 0.00 0.00 0.00 4.95
2812 3355 0.462759 GGCACCCCAAGATCGAAGAG 60.463 60.000 0.00 0.00 43.63 2.85
2814 3357 1.066143 GCACCCCAAGATCGAAGAGAA 60.066 52.381 0.00 0.00 43.63 2.87
2815 3358 2.420687 GCACCCCAAGATCGAAGAGAAT 60.421 50.000 0.00 0.00 43.63 2.40
2816 3359 3.878778 CACCCCAAGATCGAAGAGAATT 58.121 45.455 0.00 0.00 43.63 2.17
2817 3360 4.265073 CACCCCAAGATCGAAGAGAATTT 58.735 43.478 0.00 0.00 43.63 1.82
2832 3375 7.362056 CGAAGAGAATTTAGGAAATGAAGGCAA 60.362 37.037 0.00 0.00 0.00 4.52
2833 3376 7.781324 AGAGAATTTAGGAAATGAAGGCAAA 57.219 32.000 0.00 0.00 0.00 3.68
2849 3393 7.098477 TGAAGGCAAATTATGTTTCAAGGATG 58.902 34.615 0.00 0.00 34.23 3.51
2851 3395 6.400568 AGGCAAATTATGTTTCAAGGATGTG 58.599 36.000 0.00 0.00 0.00 3.21
2854 3398 6.035327 GCAAATTATGTTTCAAGGATGTGCTC 59.965 38.462 0.00 0.00 0.00 4.26
2857 3401 4.978083 ATGTTTCAAGGATGTGCTCATC 57.022 40.909 18.37 18.37 46.82 2.92
2865 3409 2.709934 AGGATGTGCTCATCTTGCCTAT 59.290 45.455 23.83 4.00 46.74 2.57
2866 3410 2.812591 GGATGTGCTCATCTTGCCTATG 59.187 50.000 23.83 0.00 46.74 2.23
2870 3414 3.273434 GTGCTCATCTTGCCTATGTTCA 58.727 45.455 0.00 0.00 0.00 3.18
2882 3435 5.242434 TGCCTATGTTCACAGTCGTTAAAT 58.758 37.500 0.00 0.00 0.00 1.40
2884 3437 5.350365 GCCTATGTTCACAGTCGTTAAATCA 59.650 40.000 0.00 0.00 0.00 2.57
2923 3477 7.763172 AACGATTGTTTGTAAGCAAAAATGA 57.237 28.000 0.00 0.00 45.01 2.57
2960 3522 4.727507 AGCTACTTGTATCTGTGACTGG 57.272 45.455 0.00 0.00 0.00 4.00
2965 3527 3.391296 ACTTGTATCTGTGACTGGTGGTT 59.609 43.478 0.00 0.00 0.00 3.67
2979 3542 4.463891 ACTGGTGGTTCATGGATTTTCATC 59.536 41.667 0.00 0.00 0.00 2.92
2980 3543 4.676109 TGGTGGTTCATGGATTTTCATCT 58.324 39.130 0.00 0.00 0.00 2.90
2993 3556 7.774134 TGGATTTTCATCTATGAATGTTGGTG 58.226 34.615 6.24 0.00 45.30 4.17
3000 3563 8.279970 TCATCTATGAATGTTGGTGTTTTAGG 57.720 34.615 0.00 0.00 33.08 2.69
3016 3579 7.097834 GTGTTTTAGGAGCTACTTGTATCTGT 58.902 38.462 2.22 0.00 0.00 3.41
3017 3580 7.063544 GTGTTTTAGGAGCTACTTGTATCTGTG 59.936 40.741 2.22 0.00 0.00 3.66
3028 3591 4.345257 ACTTGTATCTGTGACTGTTGGTCT 59.655 41.667 0.00 0.00 44.74 3.85
3052 3615 4.456535 TGTTACACCAGTGCTGTTATTGT 58.543 39.130 0.00 0.00 0.00 2.71
3060 3623 4.475944 CAGTGCTGTTATTGTTAGGCAAC 58.524 43.478 0.00 0.00 40.28 4.17
3066 3629 5.121142 GCTGTTATTGTTAGGCAACGACTTA 59.879 40.000 0.00 0.00 46.39 2.24
3071 3634 5.856126 TTGTTAGGCAACGACTTAGATTG 57.144 39.130 0.00 0.00 46.39 2.67
3072 3635 4.890088 TGTTAGGCAACGACTTAGATTGT 58.110 39.130 0.00 0.00 46.39 2.71
3073 3636 5.302360 TGTTAGGCAACGACTTAGATTGTT 58.698 37.500 0.00 0.00 46.39 2.83
3074 3637 5.761234 TGTTAGGCAACGACTTAGATTGTTT 59.239 36.000 0.00 0.00 46.39 2.83
3075 3638 6.261381 TGTTAGGCAACGACTTAGATTGTTTT 59.739 34.615 0.00 0.00 46.39 2.43
3076 3639 5.767816 AGGCAACGACTTAGATTGTTTTT 57.232 34.783 0.00 0.00 46.39 1.94
3103 3666 7.881775 ATCATAAAATTCTACTGGTTGGTCC 57.118 36.000 0.00 0.00 0.00 4.46
3104 3667 7.027874 TCATAAAATTCTACTGGTTGGTCCT 57.972 36.000 0.00 0.00 37.07 3.85
3105 3668 7.466804 TCATAAAATTCTACTGGTTGGTCCTT 58.533 34.615 0.00 0.00 37.07 3.36
3106 3669 7.610305 TCATAAAATTCTACTGGTTGGTCCTTC 59.390 37.037 0.00 0.00 37.07 3.46
3121 3684 4.220382 TGGTCCTTCGATTGAATGCATTTT 59.780 37.500 14.33 1.65 32.61 1.82
3122 3685 5.417266 TGGTCCTTCGATTGAATGCATTTTA 59.583 36.000 14.33 5.14 32.61 1.52
3123 3686 5.973565 GGTCCTTCGATTGAATGCATTTTAG 59.026 40.000 14.33 4.40 32.61 1.85
3125 3688 5.652014 TCCTTCGATTGAATGCATTTTAGGT 59.348 36.000 14.33 0.00 32.61 3.08
3126 3689 6.826231 TCCTTCGATTGAATGCATTTTAGGTA 59.174 34.615 14.33 0.00 32.61 3.08
3127 3690 7.502226 TCCTTCGATTGAATGCATTTTAGGTAT 59.498 33.333 14.33 1.48 32.61 2.73
3129 3692 8.854979 TTCGATTGAATGCATTTTAGGTATTG 57.145 30.769 14.33 5.58 0.00 1.90
3130 3693 6.917477 TCGATTGAATGCATTTTAGGTATTGC 59.083 34.615 14.33 0.00 35.67 3.56
3131 3694 6.129378 CGATTGAATGCATTTTAGGTATTGCG 60.129 38.462 14.33 3.68 37.92 4.85
3163 3749 2.584492 GCAACTGCAAAAACTGTCCT 57.416 45.000 0.00 0.00 41.59 3.85
3171 3757 6.389906 ACTGCAAAAACTGTCCTAATAATGC 58.610 36.000 0.00 0.00 0.00 3.56
3174 3760 8.116651 TGCAAAAACTGTCCTAATAATGCTAA 57.883 30.769 0.00 0.00 0.00 3.09
3175 3761 8.748412 TGCAAAAACTGTCCTAATAATGCTAAT 58.252 29.630 0.00 0.00 0.00 1.73
3202 3788 2.927553 GCTGGAGGCATTACAAGTTG 57.072 50.000 0.00 0.00 41.35 3.16
3203 3789 1.135286 GCTGGAGGCATTACAAGTTGC 60.135 52.381 1.81 0.00 41.35 4.17
3204 3790 1.131126 CTGGAGGCATTACAAGTTGCG 59.869 52.381 1.81 0.00 39.78 4.85
3205 3791 0.451783 GGAGGCATTACAAGTTGCGG 59.548 55.000 1.81 0.00 39.78 5.69
3206 3792 1.448985 GAGGCATTACAAGTTGCGGA 58.551 50.000 1.81 0.00 39.78 5.54
3207 3793 1.398390 GAGGCATTACAAGTTGCGGAG 59.602 52.381 1.81 0.00 39.78 4.63
3220 3806 4.746361 CGGAGCTGCCACTATCAG 57.254 61.111 0.00 0.00 35.94 2.90
3221 3807 1.068753 CGGAGCTGCCACTATCAGG 59.931 63.158 0.00 0.00 35.94 3.86
3222 3808 1.449353 GGAGCTGCCACTATCAGGG 59.551 63.158 0.00 0.00 36.34 4.45
3223 3809 1.449353 GAGCTGCCACTATCAGGGG 59.551 63.158 0.00 0.00 43.37 4.79
3224 3810 1.307343 AGCTGCCACTATCAGGGGT 60.307 57.895 0.00 0.00 42.17 4.95
3225 3811 0.031111 AGCTGCCACTATCAGGGGTA 60.031 55.000 0.00 0.00 42.17 3.69
3226 3812 0.106894 GCTGCCACTATCAGGGGTAC 59.893 60.000 0.00 0.00 42.17 3.34
3227 3813 1.496060 CTGCCACTATCAGGGGTACA 58.504 55.000 0.00 0.00 42.17 2.90
3228 3814 1.837439 CTGCCACTATCAGGGGTACAA 59.163 52.381 0.00 0.00 42.17 2.41
3229 3815 1.837439 TGCCACTATCAGGGGTACAAG 59.163 52.381 0.00 0.00 42.17 3.16
3230 3816 1.838077 GCCACTATCAGGGGTACAAGT 59.162 52.381 0.00 0.00 42.17 3.16
3231 3817 2.420129 GCCACTATCAGGGGTACAAGTG 60.420 54.545 0.00 0.00 42.17 3.16
3232 3818 2.420129 CCACTATCAGGGGTACAAGTGC 60.420 54.545 0.00 0.00 32.85 4.40
3233 3819 2.501723 CACTATCAGGGGTACAAGTGCT 59.498 50.000 0.00 0.00 0.00 4.40
3234 3820 3.055094 CACTATCAGGGGTACAAGTGCTT 60.055 47.826 0.00 0.00 0.00 3.91
3235 3821 2.789409 ATCAGGGGTACAAGTGCTTC 57.211 50.000 0.00 0.00 0.00 3.86
3236 3822 0.690762 TCAGGGGTACAAGTGCTTCC 59.309 55.000 0.00 0.00 0.00 3.46
3237 3823 0.400213 CAGGGGTACAAGTGCTTCCA 59.600 55.000 0.00 0.00 0.00 3.53
3238 3824 1.004745 CAGGGGTACAAGTGCTTCCAT 59.995 52.381 0.00 0.00 0.00 3.41
3239 3825 1.710809 AGGGGTACAAGTGCTTCCATT 59.289 47.619 0.00 0.00 0.00 3.16
3240 3826 1.818674 GGGGTACAAGTGCTTCCATTG 59.181 52.381 0.00 0.00 0.00 2.82
3241 3827 1.202348 GGGTACAAGTGCTTCCATTGC 59.798 52.381 0.00 0.00 0.00 3.56
3242 3828 1.885887 GGTACAAGTGCTTCCATTGCA 59.114 47.619 0.00 0.00 38.19 4.08
3243 3829 2.295909 GGTACAAGTGCTTCCATTGCAA 59.704 45.455 0.00 0.00 42.41 4.08
3244 3830 2.514205 ACAAGTGCTTCCATTGCAAC 57.486 45.000 0.00 0.00 42.41 4.17
3245 3831 1.755959 ACAAGTGCTTCCATTGCAACA 59.244 42.857 0.00 0.00 42.41 3.33
3246 3832 2.366266 ACAAGTGCTTCCATTGCAACAT 59.634 40.909 0.00 0.00 42.41 2.71
3247 3833 2.734606 CAAGTGCTTCCATTGCAACATG 59.265 45.455 0.00 0.00 42.41 3.21
3248 3834 1.965643 AGTGCTTCCATTGCAACATGT 59.034 42.857 0.00 0.00 42.41 3.21
3249 3835 3.156293 AGTGCTTCCATTGCAACATGTA 58.844 40.909 0.00 0.00 42.41 2.29
3250 3836 3.057315 AGTGCTTCCATTGCAACATGTAC 60.057 43.478 0.00 1.40 42.41 2.90
3251 3837 2.230992 TGCTTCCATTGCAACATGTACC 59.769 45.455 0.00 0.00 37.51 3.34
3252 3838 2.417243 GCTTCCATTGCAACATGTACCC 60.417 50.000 0.00 0.00 0.00 3.69
3253 3839 1.846007 TCCATTGCAACATGTACCCC 58.154 50.000 0.00 0.00 0.00 4.95
3254 3840 0.823460 CCATTGCAACATGTACCCCC 59.177 55.000 0.00 0.00 0.00 5.40
3269 3855 3.329889 CCCCAGGTGCCAGCACTA 61.330 66.667 21.19 0.00 45.52 2.74
3270 3856 2.045926 CCCAGGTGCCAGCACTAC 60.046 66.667 21.19 6.81 45.52 2.73
3271 3857 2.596851 CCCAGGTGCCAGCACTACT 61.597 63.158 21.19 8.99 45.52 2.57
3272 3858 1.376424 CCAGGTGCCAGCACTACTG 60.376 63.158 21.19 18.92 45.52 2.74
3273 3859 2.037136 CAGGTGCCAGCACTACTGC 61.037 63.158 21.19 5.40 45.78 4.40
3274 3860 2.747855 GGTGCCAGCACTACTGCC 60.748 66.667 21.19 0.88 45.53 4.85
3275 3861 2.032528 GTGCCAGCACTACTGCCA 59.967 61.111 15.41 0.00 45.53 4.92
3276 3862 1.600636 GTGCCAGCACTACTGCCAA 60.601 57.895 15.41 0.00 45.53 4.52
3277 3863 0.962356 GTGCCAGCACTACTGCCAAT 60.962 55.000 15.41 0.00 45.53 3.16
3278 3864 0.961857 TGCCAGCACTACTGCCAATG 60.962 55.000 0.00 0.00 45.53 2.82
3279 3865 1.805254 CCAGCACTACTGCCAATGC 59.195 57.895 0.00 0.00 45.53 3.56
3280 3866 1.660560 CCAGCACTACTGCCAATGCC 61.661 60.000 0.00 0.00 45.53 4.40
3281 3867 0.679002 CAGCACTACTGCCAATGCCT 60.679 55.000 0.00 0.00 45.53 4.75
3282 3868 0.679002 AGCACTACTGCCAATGCCTG 60.679 55.000 0.00 0.00 45.53 4.85
3283 3869 1.805254 CACTACTGCCAATGCCTGC 59.195 57.895 0.00 0.00 36.33 4.85
3284 3870 0.961857 CACTACTGCCAATGCCTGCA 60.962 55.000 0.00 0.00 36.33 4.41
3285 3871 0.251297 ACTACTGCCAATGCCTGCAA 60.251 50.000 0.00 0.00 36.98 4.08
3286 3872 0.454600 CTACTGCCAATGCCTGCAAG 59.545 55.000 0.00 0.00 36.98 4.01
3300 3886 4.488790 CAAGGCTGCAACCTCTGT 57.511 55.556 9.60 0.00 39.93 3.41
3301 3887 3.631453 CAAGGCTGCAACCTCTGTA 57.369 52.632 9.60 0.00 39.93 2.74
3302 3888 1.446907 CAAGGCTGCAACCTCTGTAG 58.553 55.000 9.60 0.00 39.93 2.74
3312 3898 2.268022 CCTCTGTAGGCGTGTGAGT 58.732 57.895 0.00 0.00 35.64 3.41
3313 3899 0.109086 CCTCTGTAGGCGTGTGAGTG 60.109 60.000 0.00 0.00 35.64 3.51
3314 3900 0.598562 CTCTGTAGGCGTGTGAGTGT 59.401 55.000 0.00 0.00 0.00 3.55
3315 3901 0.313987 TCTGTAGGCGTGTGAGTGTG 59.686 55.000 0.00 0.00 0.00 3.82
3316 3902 0.313987 CTGTAGGCGTGTGAGTGTGA 59.686 55.000 0.00 0.00 0.00 3.58
3317 3903 0.313987 TGTAGGCGTGTGAGTGTGAG 59.686 55.000 0.00 0.00 0.00 3.51
3318 3904 1.009389 GTAGGCGTGTGAGTGTGAGC 61.009 60.000 0.00 0.00 0.00 4.26
3319 3905 1.179174 TAGGCGTGTGAGTGTGAGCT 61.179 55.000 0.00 0.00 0.00 4.09
3320 3906 2.024319 GGCGTGTGAGTGTGAGCTC 61.024 63.158 6.82 6.82 36.12 4.09
3321 3907 1.006805 GCGTGTGAGTGTGAGCTCT 60.007 57.895 16.19 0.00 36.51 4.09
3322 3908 1.006314 GCGTGTGAGTGTGAGCTCTC 61.006 60.000 16.19 12.36 36.51 3.20
3323 3909 0.595588 CGTGTGAGTGTGAGCTCTCT 59.404 55.000 16.19 10.53 36.50 3.10
3324 3910 1.400888 CGTGTGAGTGTGAGCTCTCTC 60.401 57.143 16.19 18.30 39.78 3.20
3325 3911 1.067915 GTGTGAGTGTGAGCTCTCTCC 60.068 57.143 16.19 12.97 38.58 3.71
3326 3912 0.530288 GTGAGTGTGAGCTCTCTCCC 59.470 60.000 16.19 7.87 38.58 4.30
3327 3913 0.407528 TGAGTGTGAGCTCTCTCCCT 59.592 55.000 16.19 8.82 38.58 4.20
3328 3914 0.817013 GAGTGTGAGCTCTCTCCCTG 59.183 60.000 16.19 0.00 38.58 4.45
3329 3915 1.217779 GTGTGAGCTCTCTCCCTGC 59.782 63.158 16.19 0.00 38.58 4.85
3330 3916 1.078166 TGTGAGCTCTCTCCCTGCT 59.922 57.895 16.19 0.00 38.58 4.24
3331 3917 0.332972 TGTGAGCTCTCTCCCTGCTA 59.667 55.000 16.19 0.00 38.58 3.49
3332 3918 1.032014 GTGAGCTCTCTCCCTGCTAG 58.968 60.000 16.19 0.00 38.58 3.42
3333 3919 0.106268 TGAGCTCTCTCCCTGCTAGG 60.106 60.000 16.19 0.00 38.58 3.02
3334 3920 0.106217 GAGCTCTCTCCCTGCTAGGT 60.106 60.000 6.43 0.00 37.16 3.08
3335 3921 1.144093 GAGCTCTCTCCCTGCTAGGTA 59.856 57.143 6.43 0.00 37.16 3.08
3336 3922 1.571457 AGCTCTCTCCCTGCTAGGTAA 59.429 52.381 0.00 0.00 35.05 2.85
3337 3923 2.178984 AGCTCTCTCCCTGCTAGGTAAT 59.821 50.000 0.00 0.00 35.05 1.89
3338 3924 2.969262 GCTCTCTCCCTGCTAGGTAATT 59.031 50.000 0.00 0.00 31.93 1.40
3339 3925 3.389656 GCTCTCTCCCTGCTAGGTAATTT 59.610 47.826 0.00 0.00 31.93 1.82
3340 3926 4.742138 GCTCTCTCCCTGCTAGGTAATTTG 60.742 50.000 0.00 0.00 31.93 2.32
3341 3927 3.711704 TCTCTCCCTGCTAGGTAATTTGG 59.288 47.826 0.00 0.00 31.93 3.28
3342 3928 2.172717 TCTCCCTGCTAGGTAATTTGGC 59.827 50.000 0.00 0.00 31.93 4.52
3343 3929 1.919654 TCCCTGCTAGGTAATTTGGCA 59.080 47.619 0.00 0.00 31.93 4.92
3344 3930 2.310349 TCCCTGCTAGGTAATTTGGCAA 59.690 45.455 0.00 0.00 31.93 4.52
3345 3931 3.052944 TCCCTGCTAGGTAATTTGGCAAT 60.053 43.478 0.00 0.00 31.93 3.56
3346 3932 3.068590 CCCTGCTAGGTAATTTGGCAATG 59.931 47.826 0.00 0.00 31.93 2.82
3347 3933 3.068590 CCTGCTAGGTAATTTGGCAATGG 59.931 47.826 0.00 0.00 32.43 3.16
3348 3934 2.430332 TGCTAGGTAATTTGGCAATGGC 59.570 45.455 0.00 0.00 40.13 4.40
3349 3935 2.430332 GCTAGGTAATTTGGCAATGGCA 59.570 45.455 5.05 5.05 43.71 4.92
3350 3936 3.118811 GCTAGGTAATTTGGCAATGGCAA 60.119 43.478 18.49 18.49 46.03 4.52
3351 3937 4.443315 GCTAGGTAATTTGGCAATGGCAAT 60.443 41.667 22.65 11.64 46.84 3.56
3352 3938 3.876341 AGGTAATTTGGCAATGGCAATG 58.124 40.909 22.65 0.00 46.84 2.82
3353 3939 3.263937 AGGTAATTTGGCAATGGCAATGT 59.736 39.130 22.65 15.31 46.84 2.71
3354 3940 4.009002 GGTAATTTGGCAATGGCAATGTT 58.991 39.130 22.65 20.39 46.84 2.71
3355 3941 4.458642 GGTAATTTGGCAATGGCAATGTTT 59.541 37.500 22.65 17.41 46.84 2.83
3356 3942 5.645497 GGTAATTTGGCAATGGCAATGTTTA 59.355 36.000 22.65 16.53 46.84 2.01
3357 3943 6.318396 GGTAATTTGGCAATGGCAATGTTTAT 59.682 34.615 22.65 10.18 46.84 1.40
3358 3944 6.837471 AATTTGGCAATGGCAATGTTTATT 57.163 29.167 22.65 15.31 46.84 1.40
3359 3945 6.837471 ATTTGGCAATGGCAATGTTTATTT 57.163 29.167 22.65 0.00 46.84 1.40
3360 3946 7.934855 ATTTGGCAATGGCAATGTTTATTTA 57.065 28.000 22.65 5.19 46.84 1.40
3361 3947 6.981762 TTGGCAATGGCAATGTTTATTTAG 57.018 33.333 18.49 0.00 42.98 1.85
3362 3948 6.291648 TGGCAATGGCAATGTTTATTTAGA 57.708 33.333 7.14 0.00 43.71 2.10
3363 3949 6.339730 TGGCAATGGCAATGTTTATTTAGAG 58.660 36.000 7.14 0.00 43.71 2.43
3364 3950 6.070881 TGGCAATGGCAATGTTTATTTAGAGT 60.071 34.615 7.14 0.00 43.71 3.24
3365 3951 7.123397 TGGCAATGGCAATGTTTATTTAGAGTA 59.877 33.333 7.14 0.00 43.71 2.59
3366 3952 7.978975 GGCAATGGCAATGTTTATTTAGAGTAA 59.021 33.333 0.58 0.00 43.71 2.24
3367 3953 9.023967 GCAATGGCAATGTTTATTTAGAGTAAG 57.976 33.333 4.21 0.00 40.72 2.34
3368 3954 9.520204 CAATGGCAATGTTTATTTAGAGTAAGG 57.480 33.333 0.00 0.00 0.00 2.69
3369 3955 7.095695 TGGCAATGTTTATTTAGAGTAAGGC 57.904 36.000 0.00 0.00 0.00 4.35
3370 3956 6.661377 TGGCAATGTTTATTTAGAGTAAGGCA 59.339 34.615 0.00 0.00 0.00 4.75
3371 3957 7.341769 TGGCAATGTTTATTTAGAGTAAGGCAT 59.658 33.333 0.00 0.00 0.00 4.40
3372 3958 8.846211 GGCAATGTTTATTTAGAGTAAGGCATA 58.154 33.333 0.00 0.00 0.00 3.14
3383 3969 6.849085 AGAGTAAGGCATATAGTGAGATGG 57.151 41.667 0.00 0.00 0.00 3.51
3384 3970 5.719085 AGAGTAAGGCATATAGTGAGATGGG 59.281 44.000 0.00 0.00 0.00 4.00
3385 3971 5.655394 AGTAAGGCATATAGTGAGATGGGA 58.345 41.667 0.00 0.00 0.00 4.37
3386 3972 6.267635 AGTAAGGCATATAGTGAGATGGGAT 58.732 40.000 0.00 0.00 0.00 3.85
3387 3973 5.432680 AAGGCATATAGTGAGATGGGATG 57.567 43.478 0.00 0.00 0.00 3.51
3388 3974 4.433255 AGGCATATAGTGAGATGGGATGT 58.567 43.478 0.00 0.00 0.00 3.06
3433 4019 3.370840 TCCAATGCTATGCCTTGAACT 57.629 42.857 8.67 0.00 36.53 3.01
3437 4023 2.205022 TGCTATGCCTTGAACTGCTT 57.795 45.000 0.00 0.00 0.00 3.91
3438 4024 3.348647 TGCTATGCCTTGAACTGCTTA 57.651 42.857 0.00 0.00 0.00 3.09
3457 4043 5.244851 TGCTTAGCCATCTCTCCTACATAAG 59.755 44.000 0.29 0.00 0.00 1.73
3495 4081 3.660865 ACCGAGTGAATAGCGAGTTTTT 58.339 40.909 0.00 0.00 0.00 1.94
3511 4097 6.183360 GCGAGTTTTTCTTATTCCTGCAGTAT 60.183 38.462 13.81 8.32 0.00 2.12
3587 7446 7.995488 CCTTTTGATCTAAGTGGAAGGATACAT 59.005 37.037 0.00 0.00 35.36 2.29
3651 7511 4.502105 AATTTGGGTTTTCCTGCAACTT 57.498 36.364 0.00 0.00 40.46 2.66
3652 7512 2.977772 TTGGGTTTTCCTGCAACTTG 57.022 45.000 0.00 0.00 40.46 3.16
3653 7513 1.118838 TGGGTTTTCCTGCAACTTGG 58.881 50.000 0.00 0.00 40.46 3.61
3654 7514 1.119684 GGGTTTTCCTGCAACTTGGT 58.880 50.000 0.00 0.00 40.46 3.67
3655 7515 1.484653 GGGTTTTCCTGCAACTTGGTT 59.515 47.619 0.00 0.00 40.46 3.67
3656 7516 2.549926 GGTTTTCCTGCAACTTGGTTG 58.450 47.619 6.10 6.10 40.46 3.77
3657 7517 2.167487 GGTTTTCCTGCAACTTGGTTGA 59.833 45.455 13.63 0.05 40.19 3.18
3658 7518 3.368948 GGTTTTCCTGCAACTTGGTTGAA 60.369 43.478 13.63 2.98 40.19 2.69
3659 7519 3.799281 TTTCCTGCAACTTGGTTGAAG 57.201 42.857 13.63 12.02 45.91 3.02
3666 7526 5.336150 TGCAACTTGGTTGAAGAAATTGA 57.664 34.783 13.63 0.00 45.28 2.57
3667 7527 5.728471 TGCAACTTGGTTGAAGAAATTGAA 58.272 33.333 13.63 0.00 45.28 2.69
3668 7528 6.169094 TGCAACTTGGTTGAAGAAATTGAAA 58.831 32.000 13.63 0.00 45.28 2.69
3669 7529 6.091986 TGCAACTTGGTTGAAGAAATTGAAAC 59.908 34.615 13.63 0.00 45.28 2.78
3670 7530 6.456853 GCAACTTGGTTGAAGAAATTGAAACC 60.457 38.462 13.63 0.00 45.28 3.27
3671 7531 5.348164 ACTTGGTTGAAGAAATTGAAACCG 58.652 37.500 0.00 0.00 42.63 4.44
3672 7532 5.126384 ACTTGGTTGAAGAAATTGAAACCGA 59.874 36.000 0.00 0.00 42.63 4.69
3673 7533 5.782893 TGGTTGAAGAAATTGAAACCGAT 57.217 34.783 0.00 0.00 42.63 4.18
3674 7534 6.885952 TGGTTGAAGAAATTGAAACCGATA 57.114 33.333 0.00 0.00 42.63 2.92
3675 7535 7.278461 TGGTTGAAGAAATTGAAACCGATAA 57.722 32.000 0.00 0.00 42.63 1.75
3676 7536 7.142680 TGGTTGAAGAAATTGAAACCGATAAC 58.857 34.615 0.00 0.00 42.63 1.89
3677 7537 7.013846 TGGTTGAAGAAATTGAAACCGATAACT 59.986 33.333 0.00 0.00 42.63 2.24
3678 7538 8.508875 GGTTGAAGAAATTGAAACCGATAACTA 58.491 33.333 0.00 0.00 31.69 2.24
3679 7539 9.326339 GTTGAAGAAATTGAAACCGATAACTAC 57.674 33.333 0.00 0.00 0.00 2.73
3680 7540 8.842358 TGAAGAAATTGAAACCGATAACTACT 57.158 30.769 0.00 0.00 0.00 2.57
3681 7541 8.932791 TGAAGAAATTGAAACCGATAACTACTC 58.067 33.333 0.00 0.00 0.00 2.59
3682 7542 9.152595 GAAGAAATTGAAACCGATAACTACTCT 57.847 33.333 0.00 0.00 0.00 3.24
3684 7544 9.583765 AGAAATTGAAACCGATAACTACTCTAC 57.416 33.333 0.00 0.00 0.00 2.59
3685 7545 8.713737 AAATTGAAACCGATAACTACTCTACC 57.286 34.615 0.00 0.00 0.00 3.18
3686 7546 7.657023 ATTGAAACCGATAACTACTCTACCT 57.343 36.000 0.00 0.00 0.00 3.08
3687 7547 8.757982 ATTGAAACCGATAACTACTCTACCTA 57.242 34.615 0.00 0.00 0.00 3.08
3688 7548 7.559590 TGAAACCGATAACTACTCTACCTAC 57.440 40.000 0.00 0.00 0.00 3.18
3689 7549 7.341805 TGAAACCGATAACTACTCTACCTACT 58.658 38.462 0.00 0.00 0.00 2.57
3690 7550 7.831193 TGAAACCGATAACTACTCTACCTACTT 59.169 37.037 0.00 0.00 0.00 2.24
3691 7551 7.565323 AACCGATAACTACTCTACCTACTTG 57.435 40.000 0.00 0.00 0.00 3.16
3692 7552 6.060788 ACCGATAACTACTCTACCTACTTGG 58.939 44.000 0.00 0.00 42.93 3.61
3693 7553 6.126652 ACCGATAACTACTCTACCTACTTGGA 60.127 42.308 0.00 0.00 39.71 3.53
3694 7554 6.204495 CCGATAACTACTCTACCTACTTGGAC 59.796 46.154 0.00 0.00 39.71 4.02
3695 7555 6.765036 CGATAACTACTCTACCTACTTGGACA 59.235 42.308 0.00 0.00 39.71 4.02
3696 7556 7.444792 CGATAACTACTCTACCTACTTGGACAT 59.555 40.741 0.00 0.00 39.71 3.06
3697 7557 9.134055 GATAACTACTCTACCTACTTGGACATT 57.866 37.037 0.00 0.00 39.71 2.71
3698 7558 6.777213 ACTACTCTACCTACTTGGACATTG 57.223 41.667 0.00 0.00 39.71 2.82
3699 7559 6.254522 ACTACTCTACCTACTTGGACATTGT 58.745 40.000 0.00 0.00 39.71 2.71
3700 7560 5.407407 ACTCTACCTACTTGGACATTGTG 57.593 43.478 0.00 0.00 39.71 3.33
3701 7561 5.084519 ACTCTACCTACTTGGACATTGTGA 58.915 41.667 0.00 0.00 39.71 3.58
3702 7562 5.721960 ACTCTACCTACTTGGACATTGTGAT 59.278 40.000 0.00 0.00 39.71 3.06
3703 7563 6.213600 ACTCTACCTACTTGGACATTGTGATT 59.786 38.462 0.00 0.00 39.71 2.57
3704 7564 6.406370 TCTACCTACTTGGACATTGTGATTG 58.594 40.000 0.00 0.00 39.71 2.67
3705 7565 4.985538 ACCTACTTGGACATTGTGATTGT 58.014 39.130 0.00 0.00 39.71 2.71
3706 7566 6.121776 ACCTACTTGGACATTGTGATTGTA 57.878 37.500 0.00 0.00 39.71 2.41
3707 7567 5.938125 ACCTACTTGGACATTGTGATTGTAC 59.062 40.000 0.00 0.00 39.71 2.90
3708 7568 5.937540 CCTACTTGGACATTGTGATTGTACA 59.062 40.000 0.00 0.00 36.14 2.90
3709 7569 5.947228 ACTTGGACATTGTGATTGTACAG 57.053 39.130 0.00 0.00 39.06 2.74
3710 7570 4.216257 ACTTGGACATTGTGATTGTACAGC 59.784 41.667 0.00 0.00 39.06 4.40
3711 7571 4.019792 TGGACATTGTGATTGTACAGCT 57.980 40.909 0.00 0.00 32.99 4.24
3712 7572 3.752747 TGGACATTGTGATTGTACAGCTG 59.247 43.478 13.48 13.48 32.99 4.24
3713 7573 3.127548 GGACATTGTGATTGTACAGCTGG 59.872 47.826 19.93 0.00 0.00 4.85
3714 7574 3.753272 GACATTGTGATTGTACAGCTGGT 59.247 43.478 19.93 6.35 0.00 4.00
3715 7575 4.905429 ACATTGTGATTGTACAGCTGGTA 58.095 39.130 19.93 5.30 0.00 3.25
3716 7576 5.500234 ACATTGTGATTGTACAGCTGGTAT 58.500 37.500 19.93 5.26 33.76 2.73
3717 7577 5.945784 ACATTGTGATTGTACAGCTGGTATT 59.054 36.000 19.93 0.00 33.76 1.89
3718 7578 6.094048 ACATTGTGATTGTACAGCTGGTATTC 59.906 38.462 19.93 8.65 33.76 1.75
3719 7579 5.420725 TGTGATTGTACAGCTGGTATTCT 57.579 39.130 19.93 0.00 33.76 2.40
3720 7580 5.178061 TGTGATTGTACAGCTGGTATTCTG 58.822 41.667 19.93 0.00 33.76 3.02
3721 7581 5.178797 GTGATTGTACAGCTGGTATTCTGT 58.821 41.667 19.93 0.00 44.76 3.41
3722 7582 5.063944 GTGATTGTACAGCTGGTATTCTGTG 59.936 44.000 19.93 0.00 42.83 3.66
3723 7583 4.617253 TTGTACAGCTGGTATTCTGTGT 57.383 40.909 19.93 0.00 42.83 3.72
3724 7584 4.188247 TGTACAGCTGGTATTCTGTGTC 57.812 45.455 19.93 0.00 42.83 3.67
3725 7585 3.832490 TGTACAGCTGGTATTCTGTGTCT 59.168 43.478 19.93 0.00 42.83 3.41
3726 7586 3.601443 ACAGCTGGTATTCTGTGTCTC 57.399 47.619 19.93 0.00 41.53 3.36
3727 7587 2.899900 ACAGCTGGTATTCTGTGTCTCA 59.100 45.455 19.93 0.00 41.53 3.27
3728 7588 3.324846 ACAGCTGGTATTCTGTGTCTCAA 59.675 43.478 19.93 0.00 41.53 3.02
3729 7589 4.202357 ACAGCTGGTATTCTGTGTCTCAAA 60.202 41.667 19.93 0.00 41.53 2.69
3730 7590 4.391216 CAGCTGGTATTCTGTGTCTCAAAG 59.609 45.833 5.57 0.00 0.00 2.77
3731 7591 4.040952 AGCTGGTATTCTGTGTCTCAAAGT 59.959 41.667 0.00 0.00 0.00 2.66
3732 7592 4.757149 GCTGGTATTCTGTGTCTCAAAGTT 59.243 41.667 0.00 0.00 0.00 2.66
3733 7593 5.932303 GCTGGTATTCTGTGTCTCAAAGTTA 59.068 40.000 0.00 0.00 0.00 2.24
3734 7594 6.426937 GCTGGTATTCTGTGTCTCAAAGTTAA 59.573 38.462 0.00 0.00 0.00 2.01
3735 7595 7.360438 GCTGGTATTCTGTGTCTCAAAGTTAAG 60.360 40.741 0.00 0.00 0.00 1.85
3736 7596 7.732025 TGGTATTCTGTGTCTCAAAGTTAAGA 58.268 34.615 0.00 0.00 0.00 2.10
3737 7597 7.872993 TGGTATTCTGTGTCTCAAAGTTAAGAG 59.127 37.037 0.03 0.03 0.00 2.85
3738 7598 6.793492 ATTCTGTGTCTCAAAGTTAAGAGC 57.207 37.500 1.38 0.00 0.00 4.09
3739 7599 5.276461 TCTGTGTCTCAAAGTTAAGAGCA 57.724 39.130 1.38 1.27 0.00 4.26
3740 7600 5.858381 TCTGTGTCTCAAAGTTAAGAGCAT 58.142 37.500 1.38 0.00 0.00 3.79
3741 7601 5.928839 TCTGTGTCTCAAAGTTAAGAGCATC 59.071 40.000 1.38 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.749354 ACTGGTCTTTGTTTCAAGATAAAAACT 58.251 29.630 0.00 0.00 36.54 2.66
36 37 8.194769 GGACTGGTCTTTGTTTCAAGATAAAAA 58.805 33.333 0.67 0.00 0.00 1.94
44 45 4.229304 TCTGGACTGGTCTTTGTTTCAA 57.771 40.909 0.67 0.00 0.00 2.69
63 64 6.260936 TCTGTTTGCTCGATTTTCTTTCTTCT 59.739 34.615 0.00 0.00 0.00 2.85
118 119 4.521062 CTCGCTCTTCGCCCCTGG 62.521 72.222 0.00 0.00 38.27 4.45
129 130 4.605967 CTCTCCGCTCGCTCGCTC 62.606 72.222 0.00 0.00 0.00 5.03
137 138 0.383949 CTAGCCTGTTCTCTCCGCTC 59.616 60.000 0.00 0.00 0.00 5.03
154 155 2.899900 AGCCCATTGATACTCATCGCTA 59.100 45.455 0.00 0.00 33.51 4.26
182 185 1.166989 GGGCCGAAACCGATTTTACA 58.833 50.000 0.00 0.00 0.00 2.41
278 302 1.971695 GGAAAGGGCGGGTGTTCTG 60.972 63.158 0.00 0.00 0.00 3.02
279 303 2.434774 GGAAAGGGCGGGTGTTCT 59.565 61.111 0.00 0.00 0.00 3.01
280 304 2.675423 GGGAAAGGGCGGGTGTTC 60.675 66.667 0.00 0.00 0.00 3.18
305 329 1.080354 ATGTCGGTGAAGGGGAGGA 59.920 57.895 0.00 0.00 0.00 3.71
314 339 4.028490 GGCCCCACATGTCGGTGA 62.028 66.667 8.79 0.00 41.32 4.02
350 376 1.078214 CTGGAAGATTGGCCTGCGA 60.078 57.895 3.32 0.00 34.07 5.10
1167 1519 1.519455 GCAGCGGTAGTGCTCGAAT 60.519 57.895 0.00 0.00 45.23 3.34
1330 1682 1.203287 CGACAGGAAGAGATGTGCAGA 59.797 52.381 0.00 0.00 0.00 4.26
1332 1684 0.247460 CCGACAGGAAGAGATGTGCA 59.753 55.000 0.00 0.00 41.02 4.57
1333 1685 0.247736 ACCGACAGGAAGAGATGTGC 59.752 55.000 0.00 0.00 41.02 4.57
1334 1686 1.134965 GGACCGACAGGAAGAGATGTG 60.135 57.143 0.00 0.00 41.02 3.21
1335 1687 1.187087 GGACCGACAGGAAGAGATGT 58.813 55.000 0.00 0.00 41.02 3.06
1337 1689 1.286553 AGAGGACCGACAGGAAGAGAT 59.713 52.381 0.00 0.00 41.02 2.75
1338 1690 0.699399 AGAGGACCGACAGGAAGAGA 59.301 55.000 0.00 0.00 41.02 3.10
1340 1692 1.546961 GAAGAGGACCGACAGGAAGA 58.453 55.000 0.00 0.00 41.02 2.87
1346 1713 2.385803 GGATAAGGAAGAGGACCGACA 58.614 52.381 0.00 0.00 0.00 4.35
1364 1733 0.899253 TTACCATCGACACCCACGGA 60.899 55.000 0.00 0.00 0.00 4.69
1408 1793 2.918712 AGTCGGCAATCTTATCCTGG 57.081 50.000 0.00 0.00 0.00 4.45
1474 1859 0.409876 TGGCCTGGTACTCAGAGTCT 59.590 55.000 6.27 0.00 46.18 3.24
1480 1865 0.535335 GAACGATGGCCTGGTACTCA 59.465 55.000 3.32 0.00 0.00 3.41
1566 1951 3.903530 ATACAGGAAATGGGGGATTCC 57.096 47.619 0.00 0.00 44.45 3.01
1606 1993 7.039434 TGAGACATGTAAGAAACAGAGATGACT 60.039 37.037 0.00 0.00 42.70 3.41
1631 2058 2.034879 AGAAACCGCGTCAGCCATG 61.035 57.895 4.92 0.00 41.18 3.66
1633 2060 2.664851 CAGAAACCGCGTCAGCCA 60.665 61.111 4.92 0.00 41.18 4.75
1637 2064 3.334751 CGCACAGAAACCGCGTCA 61.335 61.111 4.92 0.00 43.86 4.35
1643 2070 2.063541 AACTGCAGCGCACAGAAACC 62.064 55.000 29.99 2.68 38.55 3.27
1645 2072 1.522668 ATAACTGCAGCGCACAGAAA 58.477 45.000 29.99 19.47 38.55 2.52
1764 2206 3.340814 ACTAGTGGAGGAACAATGCAG 57.659 47.619 0.00 0.00 0.00 4.41
1774 2216 7.589958 ACAGATCTATACAAACTAGTGGAGG 57.410 40.000 0.00 0.00 0.00 4.30
1881 2329 9.124807 GTTGCTACAATTAAGGTATTGACAAAC 57.875 33.333 0.00 0.00 38.56 2.93
1925 2385 5.473066 AAACAATCTGGTTGAGAATTGGG 57.527 39.130 7.81 0.00 40.37 4.12
1926 2386 7.219484 AGTAAACAATCTGGTTGAGAATTGG 57.781 36.000 7.81 0.00 40.37 3.16
1929 2389 9.739276 TGATTAGTAAACAATCTGGTTGAGAAT 57.261 29.630 7.81 0.00 40.37 2.40
1930 2390 8.999431 GTGATTAGTAAACAATCTGGTTGAGAA 58.001 33.333 7.81 0.00 40.37 2.87
1931 2391 8.375506 AGTGATTAGTAAACAATCTGGTTGAGA 58.624 33.333 7.81 0.00 40.37 3.27
1932 2392 8.553459 AGTGATTAGTAAACAATCTGGTTGAG 57.447 34.615 7.81 0.00 40.37 3.02
1933 2393 8.154203 TGAGTGATTAGTAAACAATCTGGTTGA 58.846 33.333 17.76 0.00 40.37 3.18
1934 2394 8.322906 TGAGTGATTAGTAAACAATCTGGTTG 57.677 34.615 17.76 0.00 43.64 3.77
1935 2395 8.157476 ACTGAGTGATTAGTAAACAATCTGGTT 58.843 33.333 22.13 7.92 34.05 3.67
1936 2396 7.680730 ACTGAGTGATTAGTAAACAATCTGGT 58.319 34.615 22.13 16.50 34.05 4.00
2019 2479 2.154567 ATGAAGACATGCTGGGCAAT 57.845 45.000 0.00 0.00 43.62 3.56
2027 2487 3.875727 AGTGTGCATCTATGAAGACATGC 59.124 43.478 1.44 0.00 37.96 4.06
2201 2705 5.711976 ACAAAAATATGTAGCTGCAGTCCTT 59.288 36.000 16.64 4.54 0.00 3.36
2204 2708 7.526608 TGTTACAAAAATATGTAGCTGCAGTC 58.473 34.615 16.64 7.83 37.73 3.51
2280 2803 0.588252 CACTTCAGTTGCCAGGTTCG 59.412 55.000 0.00 0.00 0.00 3.95
2373 2910 4.036027 CCACATGGCTTAAGCTGAATACAG 59.964 45.833 25.88 10.81 45.91 2.74
2403 2942 7.620880 TGCAAGTGTAAACTATAGGTGAGATT 58.379 34.615 4.43 0.00 0.00 2.40
2507 3046 4.018490 TCAGGCTGCATTGATACAAACAT 58.982 39.130 10.34 0.00 0.00 2.71
2563 3103 3.391296 ACCTCAGAGCAAAGGTAAGTGAA 59.609 43.478 0.00 0.00 44.12 3.18
2602 3142 0.036732 CTGACAGTGGGCTTGCCTTA 59.963 55.000 11.71 0.00 0.00 2.69
2777 3317 4.532834 GGGTGCCAGATAAAACCTAATGA 58.467 43.478 0.00 0.00 33.02 2.57
2780 3320 2.650322 TGGGGTGCCAGATAAAACCTAA 59.350 45.455 0.00 0.00 33.02 2.69
2786 3326 2.421388 CGATCTTGGGGTGCCAGATAAA 60.421 50.000 0.00 0.00 0.00 1.40
2800 3340 9.102757 TCATTTCCTAAATTCTCTTCGATCTTG 57.897 33.333 0.00 0.00 0.00 3.02
2816 3359 9.651913 GAAACATAATTTGCCTTCATTTCCTAA 57.348 29.630 0.00 0.00 0.00 2.69
2817 3360 8.811017 TGAAACATAATTTGCCTTCATTTCCTA 58.189 29.630 0.00 0.00 29.84 2.94
2832 3375 6.839124 TGAGCACATCCTTGAAACATAATT 57.161 33.333 0.00 0.00 0.00 1.40
2833 3376 7.035840 GATGAGCACATCCTTGAAACATAAT 57.964 36.000 12.62 0.00 44.89 1.28
2836 3380 4.978083 GATGAGCACATCCTTGAAACAT 57.022 40.909 12.62 0.00 44.89 2.71
2849 3393 3.064545 GTGAACATAGGCAAGATGAGCAC 59.935 47.826 1.65 5.25 0.00 4.40
2851 3395 3.273434 TGTGAACATAGGCAAGATGAGC 58.727 45.455 1.65 0.00 0.00 4.26
2854 3398 3.308053 CGACTGTGAACATAGGCAAGATG 59.692 47.826 5.37 0.00 0.00 2.90
2857 3401 2.688507 ACGACTGTGAACATAGGCAAG 58.311 47.619 5.37 0.00 0.00 4.01
2865 3409 5.120399 AGGTTGATTTAACGACTGTGAACA 58.880 37.500 0.00 0.00 40.28 3.18
2866 3410 5.333875 GGAGGTTGATTTAACGACTGTGAAC 60.334 44.000 0.00 0.00 40.28 3.18
2870 3414 4.345859 TGGAGGTTGATTTAACGACTGT 57.654 40.909 0.00 0.00 40.28 3.55
2882 3435 3.745799 TCGTTAAGCAAATGGAGGTTGA 58.254 40.909 0.00 0.00 0.00 3.18
2884 3437 4.522789 ACAATCGTTAAGCAAATGGAGGTT 59.477 37.500 0.00 0.00 0.00 3.50
2923 3477 8.110860 ACAAGTAGCTAAAACAAGCATAACAT 57.889 30.769 0.00 0.00 45.30 2.71
2960 3522 7.572523 TCATAGATGAAAATCCATGAACCAC 57.427 36.000 0.00 0.00 33.08 4.16
2979 3542 6.375455 AGCTCCTAAAACACCAACATTCATAG 59.625 38.462 0.00 0.00 0.00 2.23
2980 3543 6.245408 AGCTCCTAAAACACCAACATTCATA 58.755 36.000 0.00 0.00 0.00 2.15
2993 3556 7.275999 GTCACAGATACAAGTAGCTCCTAAAAC 59.724 40.741 0.00 0.00 27.88 2.43
2999 3562 4.158764 ACAGTCACAGATACAAGTAGCTCC 59.841 45.833 0.00 0.00 27.88 4.70
3000 3563 5.317733 ACAGTCACAGATACAAGTAGCTC 57.682 43.478 0.00 0.00 27.88 4.09
3016 3579 4.890088 GGTGTAACATAGACCAACAGTCA 58.110 43.478 0.00 0.00 44.02 3.41
3028 3591 6.234920 ACAATAACAGCACTGGTGTAACATA 58.765 36.000 14.12 3.93 43.73 2.29
3052 3615 6.870971 AAAACAATCTAAGTCGTTGCCTAA 57.129 33.333 0.00 0.00 0.00 2.69
3077 3640 9.403583 GGACCAACCAGTAGAATTTTATGATAA 57.596 33.333 0.00 0.00 38.79 1.75
3078 3641 8.778059 AGGACCAACCAGTAGAATTTTATGATA 58.222 33.333 0.00 0.00 42.04 2.15
3079 3642 7.643123 AGGACCAACCAGTAGAATTTTATGAT 58.357 34.615 0.00 0.00 42.04 2.45
3080 3643 7.027874 AGGACCAACCAGTAGAATTTTATGA 57.972 36.000 0.00 0.00 42.04 2.15
3081 3644 7.414098 CGAAGGACCAACCAGTAGAATTTTATG 60.414 40.741 0.00 0.00 42.04 1.90
3082 3645 6.598064 CGAAGGACCAACCAGTAGAATTTTAT 59.402 38.462 0.00 0.00 42.04 1.40
3083 3646 5.935789 CGAAGGACCAACCAGTAGAATTTTA 59.064 40.000 0.00 0.00 42.04 1.52
3084 3647 4.760204 CGAAGGACCAACCAGTAGAATTTT 59.240 41.667 0.00 0.00 42.04 1.82
3085 3648 4.041198 TCGAAGGACCAACCAGTAGAATTT 59.959 41.667 0.00 0.00 42.04 1.82
3086 3649 3.581332 TCGAAGGACCAACCAGTAGAATT 59.419 43.478 0.00 0.00 42.04 2.17
3087 3650 3.170717 TCGAAGGACCAACCAGTAGAAT 58.829 45.455 0.00 0.00 42.04 2.40
3088 3651 2.600790 TCGAAGGACCAACCAGTAGAA 58.399 47.619 0.00 0.00 42.04 2.10
3089 3652 2.297698 TCGAAGGACCAACCAGTAGA 57.702 50.000 0.00 0.00 42.04 2.59
3090 3653 3.056107 TCAATCGAAGGACCAACCAGTAG 60.056 47.826 0.00 0.00 42.04 2.57
3091 3654 2.901192 TCAATCGAAGGACCAACCAGTA 59.099 45.455 0.00 0.00 42.04 2.74
3092 3655 1.697432 TCAATCGAAGGACCAACCAGT 59.303 47.619 0.00 0.00 42.04 4.00
3093 3656 2.472695 TCAATCGAAGGACCAACCAG 57.527 50.000 0.00 0.00 42.04 4.00
3094 3657 2.940994 TTCAATCGAAGGACCAACCA 57.059 45.000 0.00 0.00 42.04 3.67
3095 3658 2.159379 GCATTCAATCGAAGGACCAACC 60.159 50.000 0.00 0.00 34.85 3.77
3096 3659 2.487762 TGCATTCAATCGAAGGACCAAC 59.512 45.455 0.00 0.00 34.85 3.77
3097 3660 2.789213 TGCATTCAATCGAAGGACCAA 58.211 42.857 0.00 0.00 34.85 3.67
3098 3661 2.488204 TGCATTCAATCGAAGGACCA 57.512 45.000 0.00 0.00 34.85 4.02
3099 3662 4.376340 AAATGCATTCAATCGAAGGACC 57.624 40.909 13.38 0.00 34.85 4.46
3100 3663 5.973565 CCTAAAATGCATTCAATCGAAGGAC 59.026 40.000 13.38 0.00 34.85 3.85
3101 3664 5.652014 ACCTAAAATGCATTCAATCGAAGGA 59.348 36.000 13.38 0.00 34.85 3.36
3102 3665 5.894807 ACCTAAAATGCATTCAATCGAAGG 58.105 37.500 13.38 13.10 36.01 3.46
3103 3666 8.961092 CAATACCTAAAATGCATTCAATCGAAG 58.039 33.333 13.38 3.03 33.74 3.79
3104 3667 7.434897 GCAATACCTAAAATGCATTCAATCGAA 59.565 33.333 13.38 0.00 38.63 3.71
3105 3668 6.917477 GCAATACCTAAAATGCATTCAATCGA 59.083 34.615 13.38 0.00 38.63 3.59
3106 3669 6.129378 CGCAATACCTAAAATGCATTCAATCG 60.129 38.462 13.38 2.38 38.69 3.34
3150 3736 9.586435 AATTAGCATTATTAGGACAGTTTTTGC 57.414 29.630 0.00 0.00 0.00 3.68
3157 3743 9.888878 CAATGACAATTAGCATTATTAGGACAG 57.111 33.333 5.05 0.00 33.68 3.51
3158 3744 8.352201 GCAATGACAATTAGCATTATTAGGACA 58.648 33.333 5.05 0.00 33.68 4.02
3159 3745 8.571336 AGCAATGACAATTAGCATTATTAGGAC 58.429 33.333 5.05 0.00 33.68 3.85
3160 3746 8.570488 CAGCAATGACAATTAGCATTATTAGGA 58.430 33.333 5.05 0.00 33.68 2.94
3161 3747 7.811236 CCAGCAATGACAATTAGCATTATTAGG 59.189 37.037 5.05 3.08 33.68 2.69
3163 3749 8.462589 TCCAGCAATGACAATTAGCATTATTA 57.537 30.769 5.05 0.00 33.68 0.98
3171 3757 3.705043 GCCTCCAGCAATGACAATTAG 57.295 47.619 0.00 0.00 42.97 1.73
3195 3781 2.980233 GGCAGCTCCGCAACTTGT 60.980 61.111 0.00 0.00 0.00 3.16
3202 3788 1.593750 CTGATAGTGGCAGCTCCGC 60.594 63.158 7.45 7.45 45.76 5.54
3203 3789 1.068753 CCTGATAGTGGCAGCTCCG 59.931 63.158 0.00 0.00 37.80 4.63
3204 3790 1.449353 CCCTGATAGTGGCAGCTCC 59.551 63.158 0.00 0.00 32.06 4.70
3205 3791 1.341156 ACCCCTGATAGTGGCAGCTC 61.341 60.000 0.00 0.00 32.06 4.09
3206 3792 0.031111 TACCCCTGATAGTGGCAGCT 60.031 55.000 0.00 0.00 32.06 4.24
3207 3793 0.106894 GTACCCCTGATAGTGGCAGC 59.893 60.000 0.00 0.00 32.06 5.25
3208 3794 1.496060 TGTACCCCTGATAGTGGCAG 58.504 55.000 0.00 0.00 0.00 4.85
3209 3795 1.837439 CTTGTACCCCTGATAGTGGCA 59.163 52.381 0.00 0.00 0.00 4.92
3210 3796 1.838077 ACTTGTACCCCTGATAGTGGC 59.162 52.381 0.00 0.00 0.00 5.01
3211 3797 2.420129 GCACTTGTACCCCTGATAGTGG 60.420 54.545 0.00 0.00 34.92 4.00
3212 3798 2.501723 AGCACTTGTACCCCTGATAGTG 59.498 50.000 0.00 0.00 36.85 2.74
3213 3799 2.834113 AGCACTTGTACCCCTGATAGT 58.166 47.619 0.00 0.00 0.00 2.12
3214 3800 3.432326 GGAAGCACTTGTACCCCTGATAG 60.432 52.174 0.00 0.00 0.00 2.08
3215 3801 2.504175 GGAAGCACTTGTACCCCTGATA 59.496 50.000 0.00 0.00 0.00 2.15
3216 3802 1.282157 GGAAGCACTTGTACCCCTGAT 59.718 52.381 0.00 0.00 0.00 2.90
3217 3803 0.690762 GGAAGCACTTGTACCCCTGA 59.309 55.000 0.00 0.00 0.00 3.86
3218 3804 0.400213 TGGAAGCACTTGTACCCCTG 59.600 55.000 0.00 0.00 0.00 4.45
3219 3805 1.372501 ATGGAAGCACTTGTACCCCT 58.627 50.000 0.00 0.00 0.00 4.79
3220 3806 1.818674 CAATGGAAGCACTTGTACCCC 59.181 52.381 0.00 0.00 0.00 4.95
3221 3807 1.202348 GCAATGGAAGCACTTGTACCC 59.798 52.381 0.00 0.00 0.00 3.69
3222 3808 1.885887 TGCAATGGAAGCACTTGTACC 59.114 47.619 0.00 0.00 37.02 3.34
3223 3809 3.243367 TGTTGCAATGGAAGCACTTGTAC 60.243 43.478 0.59 0.00 42.54 2.90
3224 3810 2.954989 TGTTGCAATGGAAGCACTTGTA 59.045 40.909 0.59 0.00 42.54 2.41
3225 3811 1.755959 TGTTGCAATGGAAGCACTTGT 59.244 42.857 0.59 0.00 42.54 3.16
3226 3812 2.512485 TGTTGCAATGGAAGCACTTG 57.488 45.000 0.59 0.00 42.54 3.16
3227 3813 2.366266 ACATGTTGCAATGGAAGCACTT 59.634 40.909 0.59 0.00 42.54 3.16
3228 3814 1.965643 ACATGTTGCAATGGAAGCACT 59.034 42.857 0.59 0.00 42.54 4.40
3229 3815 2.443887 ACATGTTGCAATGGAAGCAC 57.556 45.000 0.59 0.00 42.54 4.40
3230 3816 2.230992 GGTACATGTTGCAATGGAAGCA 59.769 45.455 2.30 0.00 40.85 3.91
3231 3817 2.417243 GGGTACATGTTGCAATGGAAGC 60.417 50.000 2.30 0.66 31.46 3.86
3232 3818 2.166254 GGGGTACATGTTGCAATGGAAG 59.834 50.000 2.30 0.00 31.46 3.46
3233 3819 2.175202 GGGGTACATGTTGCAATGGAA 58.825 47.619 2.30 0.00 31.46 3.53
3234 3820 1.618345 GGGGGTACATGTTGCAATGGA 60.618 52.381 2.30 0.00 31.46 3.41
3235 3821 0.823460 GGGGGTACATGTTGCAATGG 59.177 55.000 2.30 0.00 31.46 3.16
3265 3851 0.961857 TGCAGGCATTGGCAGTAGTG 60.962 55.000 13.20 2.64 43.71 2.74
3266 3852 0.251297 TTGCAGGCATTGGCAGTAGT 60.251 50.000 13.20 0.00 43.71 2.73
3267 3853 0.454600 CTTGCAGGCATTGGCAGTAG 59.545 55.000 13.20 3.22 43.71 2.57
3268 3854 0.966875 CCTTGCAGGCATTGGCAGTA 60.967 55.000 13.20 0.71 43.71 2.74
3269 3855 2.280552 CCTTGCAGGCATTGGCAGT 61.281 57.895 13.20 0.00 43.71 4.40
3270 3856 2.577059 CCTTGCAGGCATTGGCAG 59.423 61.111 13.20 5.57 43.71 4.85
3283 3869 1.446907 CTACAGAGGTTGCAGCCTTG 58.553 55.000 24.15 22.50 39.34 3.61
3284 3870 0.326264 CCTACAGAGGTTGCAGCCTT 59.674 55.000 24.15 10.55 39.34 4.35
3285 3871 1.986413 CCTACAGAGGTTGCAGCCT 59.014 57.895 23.56 23.56 42.53 4.58
3286 3872 1.746991 GCCTACAGAGGTTGCAGCC 60.747 63.158 12.39 12.39 45.78 4.85
3287 3873 2.103042 CGCCTACAGAGGTTGCAGC 61.103 63.158 0.00 0.00 45.78 5.25
3288 3874 1.016130 CACGCCTACAGAGGTTGCAG 61.016 60.000 0.00 0.00 45.78 4.41
3289 3875 1.005037 CACGCCTACAGAGGTTGCA 60.005 57.895 0.00 0.00 45.78 4.08
3290 3876 1.004918 ACACGCCTACAGAGGTTGC 60.005 57.895 0.00 0.00 45.78 4.17
3291 3877 0.317160 TCACACGCCTACAGAGGTTG 59.683 55.000 0.00 0.00 45.78 3.77
3292 3878 0.603569 CTCACACGCCTACAGAGGTT 59.396 55.000 0.00 0.00 45.78 3.50
3293 3879 0.539901 ACTCACACGCCTACAGAGGT 60.540 55.000 0.00 0.00 45.78 3.85
3294 3880 0.109086 CACTCACACGCCTACAGAGG 60.109 60.000 0.00 0.00 46.93 3.69
3295 3881 0.598562 ACACTCACACGCCTACAGAG 59.401 55.000 0.00 0.00 0.00 3.35
3296 3882 0.313987 CACACTCACACGCCTACAGA 59.686 55.000 0.00 0.00 0.00 3.41
3297 3883 0.313987 TCACACTCACACGCCTACAG 59.686 55.000 0.00 0.00 0.00 2.74
3298 3884 0.313987 CTCACACTCACACGCCTACA 59.686 55.000 0.00 0.00 0.00 2.74
3299 3885 1.009389 GCTCACACTCACACGCCTAC 61.009 60.000 0.00 0.00 0.00 3.18
3300 3886 1.179174 AGCTCACACTCACACGCCTA 61.179 55.000 0.00 0.00 0.00 3.93
3301 3887 2.029666 GCTCACACTCACACGCCT 59.970 61.111 0.00 0.00 0.00 5.52
3302 3888 2.024319 GAGCTCACACTCACACGCC 61.024 63.158 9.40 0.00 36.65 5.68
3303 3889 1.006314 GAGAGCTCACACTCACACGC 61.006 60.000 17.77 0.00 39.26 5.34
3304 3890 0.595588 AGAGAGCTCACACTCACACG 59.404 55.000 17.77 0.00 39.26 4.49
3305 3891 1.067915 GGAGAGAGCTCACACTCACAC 60.068 57.143 25.34 12.63 43.14 3.82
3306 3892 1.252175 GGAGAGAGCTCACACTCACA 58.748 55.000 25.34 0.00 43.14 3.58
3307 3893 0.530288 GGGAGAGAGCTCACACTCAC 59.470 60.000 25.34 21.66 44.25 3.51
3308 3894 2.968737 GGGAGAGAGCTCACACTCA 58.031 57.895 25.34 0.00 44.25 3.41
3313 3899 1.032014 CTAGCAGGGAGAGAGCTCAC 58.968 60.000 17.77 10.21 45.22 3.51
3314 3900 0.106268 CCTAGCAGGGAGAGAGCTCA 60.106 60.000 17.77 0.00 43.14 4.26
3315 3901 0.106217 ACCTAGCAGGGAGAGAGCTC 60.106 60.000 5.27 5.27 40.58 4.09
3316 3902 1.227249 TACCTAGCAGGGAGAGAGCT 58.773 55.000 7.06 0.00 40.58 4.09
3317 3903 2.074729 TTACCTAGCAGGGAGAGAGC 57.925 55.000 7.06 0.00 40.58 4.09
3318 3904 4.202305 CCAAATTACCTAGCAGGGAGAGAG 60.202 50.000 7.06 0.00 40.58 3.20
3319 3905 3.711704 CCAAATTACCTAGCAGGGAGAGA 59.288 47.826 7.06 0.00 40.58 3.10
3320 3906 3.745797 GCCAAATTACCTAGCAGGGAGAG 60.746 52.174 7.06 0.00 40.58 3.20
3321 3907 2.172717 GCCAAATTACCTAGCAGGGAGA 59.827 50.000 7.06 0.00 40.58 3.71
3322 3908 2.092429 TGCCAAATTACCTAGCAGGGAG 60.092 50.000 7.06 0.00 40.58 4.30
3323 3909 1.919654 TGCCAAATTACCTAGCAGGGA 59.080 47.619 7.06 0.00 40.58 4.20
3324 3910 2.435372 TGCCAAATTACCTAGCAGGG 57.565 50.000 7.06 0.71 40.58 4.45
3325 3911 3.068590 CCATTGCCAAATTACCTAGCAGG 59.931 47.826 1.16 1.16 42.49 4.85
3326 3912 3.491447 GCCATTGCCAAATTACCTAGCAG 60.491 47.826 0.00 0.00 34.45 4.24
3327 3913 2.430332 GCCATTGCCAAATTACCTAGCA 59.570 45.455 0.00 0.00 0.00 3.49
3328 3914 2.430332 TGCCATTGCCAAATTACCTAGC 59.570 45.455 0.00 0.00 36.33 3.42
3329 3915 4.734398 TTGCCATTGCCAAATTACCTAG 57.266 40.909 0.00 0.00 36.33 3.02
3330 3916 4.469227 ACATTGCCATTGCCAAATTACCTA 59.531 37.500 0.00 0.00 36.33 3.08
3331 3917 3.263937 ACATTGCCATTGCCAAATTACCT 59.736 39.130 0.00 0.00 36.33 3.08
3332 3918 3.608796 ACATTGCCATTGCCAAATTACC 58.391 40.909 0.00 0.00 36.33 2.85
3333 3919 5.625921 AAACATTGCCATTGCCAAATTAC 57.374 34.783 0.00 0.00 36.33 1.89
3334 3920 7.934855 AATAAACATTGCCATTGCCAAATTA 57.065 28.000 0.00 0.00 36.33 1.40
3335 3921 6.837471 AATAAACATTGCCATTGCCAAATT 57.163 29.167 0.00 0.00 36.33 1.82
3336 3922 6.837471 AAATAAACATTGCCATTGCCAAAT 57.163 29.167 0.00 0.00 36.33 2.32
3337 3923 7.164122 TCTAAATAAACATTGCCATTGCCAAA 58.836 30.769 0.00 0.00 36.33 3.28
3338 3924 6.705302 TCTAAATAAACATTGCCATTGCCAA 58.295 32.000 0.00 0.00 36.33 4.52
3339 3925 6.070881 ACTCTAAATAAACATTGCCATTGCCA 60.071 34.615 0.00 0.00 36.33 4.92
3340 3926 6.340522 ACTCTAAATAAACATTGCCATTGCC 58.659 36.000 0.00 0.00 36.33 4.52
3341 3927 8.925161 TTACTCTAAATAAACATTGCCATTGC 57.075 30.769 0.00 0.00 38.26 3.56
3342 3928 9.520204 CCTTACTCTAAATAAACATTGCCATTG 57.480 33.333 0.00 0.00 0.00 2.82
3343 3929 8.197439 GCCTTACTCTAAATAAACATTGCCATT 58.803 33.333 0.00 0.00 0.00 3.16
3344 3930 7.341769 TGCCTTACTCTAAATAAACATTGCCAT 59.658 33.333 0.00 0.00 0.00 4.40
3345 3931 6.661377 TGCCTTACTCTAAATAAACATTGCCA 59.339 34.615 0.00 0.00 0.00 4.92
3346 3932 7.095695 TGCCTTACTCTAAATAAACATTGCC 57.904 36.000 0.00 0.00 0.00 4.52
3357 3943 8.807118 CCATCTCACTATATGCCTTACTCTAAA 58.193 37.037 0.00 0.00 0.00 1.85
3358 3944 7.397476 CCCATCTCACTATATGCCTTACTCTAA 59.603 40.741 0.00 0.00 0.00 2.10
3359 3945 6.892456 CCCATCTCACTATATGCCTTACTCTA 59.108 42.308 0.00 0.00 0.00 2.43
3360 3946 5.719085 CCCATCTCACTATATGCCTTACTCT 59.281 44.000 0.00 0.00 0.00 3.24
3361 3947 5.717178 TCCCATCTCACTATATGCCTTACTC 59.283 44.000 0.00 0.00 0.00 2.59
3362 3948 5.655394 TCCCATCTCACTATATGCCTTACT 58.345 41.667 0.00 0.00 0.00 2.24
3363 3949 6.070538 ACATCCCATCTCACTATATGCCTTAC 60.071 42.308 0.00 0.00 0.00 2.34
3364 3950 6.025539 ACATCCCATCTCACTATATGCCTTA 58.974 40.000 0.00 0.00 0.00 2.69
3365 3951 4.848660 ACATCCCATCTCACTATATGCCTT 59.151 41.667 0.00 0.00 0.00 4.35
3366 3952 4.224594 CACATCCCATCTCACTATATGCCT 59.775 45.833 0.00 0.00 0.00 4.75
3367 3953 4.019860 ACACATCCCATCTCACTATATGCC 60.020 45.833 0.00 0.00 0.00 4.40
3368 3954 5.157940 ACACATCCCATCTCACTATATGC 57.842 43.478 0.00 0.00 0.00 3.14
3369 3955 8.150296 TGTTTACACATCCCATCTCACTATATG 58.850 37.037 0.00 0.00 0.00 1.78
3370 3956 8.262601 TGTTTACACATCCCATCTCACTATAT 57.737 34.615 0.00 0.00 0.00 0.86
3371 3957 7.669089 TGTTTACACATCCCATCTCACTATA 57.331 36.000 0.00 0.00 0.00 1.31
3372 3958 6.560003 TGTTTACACATCCCATCTCACTAT 57.440 37.500 0.00 0.00 0.00 2.12
3373 3959 6.367374 TTGTTTACACATCCCATCTCACTA 57.633 37.500 0.00 0.00 31.06 2.74
3374 3960 4.908601 TGTTTACACATCCCATCTCACT 57.091 40.909 0.00 0.00 0.00 3.41
3375 3961 5.957842 TTTGTTTACACATCCCATCTCAC 57.042 39.130 0.00 0.00 31.06 3.51
3376 3962 6.068010 ACTTTTGTTTACACATCCCATCTCA 58.932 36.000 0.00 0.00 31.06 3.27
3377 3963 6.431234 AGACTTTTGTTTACACATCCCATCTC 59.569 38.462 0.00 0.00 31.06 2.75
3378 3964 6.306987 AGACTTTTGTTTACACATCCCATCT 58.693 36.000 0.00 0.00 31.06 2.90
3379 3965 6.575162 AGACTTTTGTTTACACATCCCATC 57.425 37.500 0.00 0.00 31.06 3.51
3380 3966 7.001674 TGTAGACTTTTGTTTACACATCCCAT 58.998 34.615 0.00 0.00 42.62 4.00
3381 3967 6.358178 TGTAGACTTTTGTTTACACATCCCA 58.642 36.000 0.00 0.00 42.62 4.37
3382 3968 6.870971 TGTAGACTTTTGTTTACACATCCC 57.129 37.500 0.00 0.00 42.62 3.85
3423 4009 0.110295 TGGCTAAGCAGTTCAAGGCA 59.890 50.000 0.00 0.00 41.62 4.75
3433 4019 3.032265 TGTAGGAGAGATGGCTAAGCA 57.968 47.619 0.00 0.00 0.00 3.91
3437 4023 8.958060 AATAACTTATGTAGGAGAGATGGCTA 57.042 34.615 0.00 0.00 0.00 3.93
3438 4024 7.863901 AATAACTTATGTAGGAGAGATGGCT 57.136 36.000 0.00 0.00 0.00 4.75
3476 4062 5.517037 AAGAAAAACTCGCTATTCACTCG 57.483 39.130 0.00 0.00 0.00 4.18
3495 4081 7.201974 GGTTGTACCTATACTGCAGGAATAAGA 60.202 40.741 19.93 0.00 36.61 2.10
3511 4097 1.001181 GAGTGGTTGCGGTTGTACCTA 59.999 52.381 0.00 0.00 35.66 3.08
3651 7511 5.782893 ATCGGTTTCAATTTCTTCAACCA 57.217 34.783 0.00 0.00 37.36 3.67
3652 7512 7.368059 AGTTATCGGTTTCAATTTCTTCAACC 58.632 34.615 0.00 0.00 34.64 3.77
3653 7513 9.326339 GTAGTTATCGGTTTCAATTTCTTCAAC 57.674 33.333 0.00 0.00 0.00 3.18
3654 7514 9.280174 AGTAGTTATCGGTTTCAATTTCTTCAA 57.720 29.630 0.00 0.00 0.00 2.69
3655 7515 8.842358 AGTAGTTATCGGTTTCAATTTCTTCA 57.158 30.769 0.00 0.00 0.00 3.02
3656 7516 9.152595 AGAGTAGTTATCGGTTTCAATTTCTTC 57.847 33.333 0.00 0.00 0.00 2.87
3658 7518 9.583765 GTAGAGTAGTTATCGGTTTCAATTTCT 57.416 33.333 0.00 0.00 0.00 2.52
3659 7519 8.815189 GGTAGAGTAGTTATCGGTTTCAATTTC 58.185 37.037 0.00 0.00 0.00 2.17
3660 7520 8.537858 AGGTAGAGTAGTTATCGGTTTCAATTT 58.462 33.333 0.00 0.00 0.00 1.82
3661 7521 8.075761 AGGTAGAGTAGTTATCGGTTTCAATT 57.924 34.615 0.00 0.00 0.00 2.32
3662 7522 7.657023 AGGTAGAGTAGTTATCGGTTTCAAT 57.343 36.000 0.00 0.00 0.00 2.57
3663 7523 7.831193 AGTAGGTAGAGTAGTTATCGGTTTCAA 59.169 37.037 0.00 0.00 0.00 2.69
3664 7524 7.341805 AGTAGGTAGAGTAGTTATCGGTTTCA 58.658 38.462 0.00 0.00 0.00 2.69
3665 7525 7.800155 AGTAGGTAGAGTAGTTATCGGTTTC 57.200 40.000 0.00 0.00 0.00 2.78
3666 7526 7.067981 CCAAGTAGGTAGAGTAGTTATCGGTTT 59.932 40.741 0.00 0.00 0.00 3.27
3667 7527 6.545298 CCAAGTAGGTAGAGTAGTTATCGGTT 59.455 42.308 0.00 0.00 0.00 4.44
3668 7528 6.060788 CCAAGTAGGTAGAGTAGTTATCGGT 58.939 44.000 0.00 0.00 0.00 4.69
3669 7529 6.204495 GTCCAAGTAGGTAGAGTAGTTATCGG 59.796 46.154 0.00 0.00 39.02 4.18
3670 7530 6.765036 TGTCCAAGTAGGTAGAGTAGTTATCG 59.235 42.308 0.00 0.00 39.02 2.92
3671 7531 8.694581 ATGTCCAAGTAGGTAGAGTAGTTATC 57.305 38.462 0.00 0.00 39.02 1.75
3672 7532 8.915036 CAATGTCCAAGTAGGTAGAGTAGTTAT 58.085 37.037 0.00 0.00 39.02 1.89
3673 7533 7.892241 ACAATGTCCAAGTAGGTAGAGTAGTTA 59.108 37.037 0.00 0.00 39.02 2.24
3674 7534 6.724905 ACAATGTCCAAGTAGGTAGAGTAGTT 59.275 38.462 0.00 0.00 39.02 2.24
3675 7535 6.153000 CACAATGTCCAAGTAGGTAGAGTAGT 59.847 42.308 0.00 0.00 39.02 2.73
3676 7536 6.377429 TCACAATGTCCAAGTAGGTAGAGTAG 59.623 42.308 0.00 0.00 39.02 2.57
3677 7537 6.250711 TCACAATGTCCAAGTAGGTAGAGTA 58.749 40.000 0.00 0.00 39.02 2.59
3678 7538 5.084519 TCACAATGTCCAAGTAGGTAGAGT 58.915 41.667 0.00 0.00 39.02 3.24
3679 7539 5.661056 TCACAATGTCCAAGTAGGTAGAG 57.339 43.478 0.00 0.00 39.02 2.43
3680 7540 6.013725 ACAATCACAATGTCCAAGTAGGTAGA 60.014 38.462 0.00 0.00 39.02 2.59
3681 7541 6.173339 ACAATCACAATGTCCAAGTAGGTAG 58.827 40.000 0.00 0.00 39.02 3.18
3682 7542 6.121776 ACAATCACAATGTCCAAGTAGGTA 57.878 37.500 0.00 0.00 39.02 3.08
3683 7543 4.985538 ACAATCACAATGTCCAAGTAGGT 58.014 39.130 0.00 0.00 39.02 3.08
3684 7544 5.937540 TGTACAATCACAATGTCCAAGTAGG 59.062 40.000 0.00 0.00 39.47 3.18
3685 7545 6.402550 GCTGTACAATCACAATGTCCAAGTAG 60.403 42.308 0.00 0.00 32.27 2.57
3686 7546 5.411361 GCTGTACAATCACAATGTCCAAGTA 59.589 40.000 0.00 0.00 32.27 2.24
3687 7547 4.216257 GCTGTACAATCACAATGTCCAAGT 59.784 41.667 0.00 0.00 32.27 3.16
3688 7548 4.456911 AGCTGTACAATCACAATGTCCAAG 59.543 41.667 0.00 0.00 32.27 3.61
3689 7549 4.216042 CAGCTGTACAATCACAATGTCCAA 59.784 41.667 5.25 0.00 32.27 3.53
3690 7550 3.752747 CAGCTGTACAATCACAATGTCCA 59.247 43.478 5.25 0.00 32.27 4.02
3691 7551 3.127548 CCAGCTGTACAATCACAATGTCC 59.872 47.826 13.81 0.00 32.27 4.02
3692 7552 3.753272 ACCAGCTGTACAATCACAATGTC 59.247 43.478 13.81 0.00 32.27 3.06
3693 7553 3.754965 ACCAGCTGTACAATCACAATGT 58.245 40.909 13.81 0.00 34.81 2.71
3694 7554 6.317140 AGAATACCAGCTGTACAATCACAATG 59.683 38.462 13.81 0.00 30.62 2.82
3695 7555 6.317140 CAGAATACCAGCTGTACAATCACAAT 59.683 38.462 13.81 0.00 30.62 2.71
3696 7556 5.643348 CAGAATACCAGCTGTACAATCACAA 59.357 40.000 13.81 0.00 30.62 3.33
3697 7557 5.178061 CAGAATACCAGCTGTACAATCACA 58.822 41.667 13.81 0.00 30.62 3.58
3698 7558 5.063944 CACAGAATACCAGCTGTACAATCAC 59.936 44.000 13.81 0.00 43.06 3.06
3699 7559 5.178061 CACAGAATACCAGCTGTACAATCA 58.822 41.667 13.81 0.00 43.06 2.57
3700 7560 5.178797 ACACAGAATACCAGCTGTACAATC 58.821 41.667 13.81 4.43 43.06 2.67
3701 7561 5.046304 AGACACAGAATACCAGCTGTACAAT 60.046 40.000 13.81 0.00 43.06 2.71
3702 7562 4.283467 AGACACAGAATACCAGCTGTACAA 59.717 41.667 13.81 0.00 43.06 2.41
3703 7563 3.832490 AGACACAGAATACCAGCTGTACA 59.168 43.478 13.81 0.00 43.06 2.90
3704 7564 4.082190 TGAGACACAGAATACCAGCTGTAC 60.082 45.833 13.81 0.00 43.06 2.90
3705 7565 4.086457 TGAGACACAGAATACCAGCTGTA 58.914 43.478 13.81 5.74 43.06 2.74
3706 7566 2.899900 TGAGACACAGAATACCAGCTGT 59.100 45.455 13.81 3.45 45.62 4.40
3707 7567 3.599730 TGAGACACAGAATACCAGCTG 57.400 47.619 6.78 6.78 38.10 4.24
3708 7568 4.040952 ACTTTGAGACACAGAATACCAGCT 59.959 41.667 0.00 0.00 0.00 4.24
3709 7569 4.319177 ACTTTGAGACACAGAATACCAGC 58.681 43.478 0.00 0.00 0.00 4.85
3710 7570 7.872993 TCTTAACTTTGAGACACAGAATACCAG 59.127 37.037 0.00 0.00 0.00 4.00
3711 7571 7.732025 TCTTAACTTTGAGACACAGAATACCA 58.268 34.615 0.00 0.00 0.00 3.25
3712 7572 7.148557 GCTCTTAACTTTGAGACACAGAATACC 60.149 40.741 0.00 0.00 32.44 2.73
3713 7573 7.385205 TGCTCTTAACTTTGAGACACAGAATAC 59.615 37.037 0.00 0.00 32.44 1.89
3714 7574 7.441836 TGCTCTTAACTTTGAGACACAGAATA 58.558 34.615 0.00 0.00 32.44 1.75
3715 7575 6.291377 TGCTCTTAACTTTGAGACACAGAAT 58.709 36.000 0.00 0.00 32.44 2.40
3716 7576 5.670485 TGCTCTTAACTTTGAGACACAGAA 58.330 37.500 0.00 0.00 32.44 3.02
3717 7577 5.276461 TGCTCTTAACTTTGAGACACAGA 57.724 39.130 0.00 0.00 32.44 3.41
3718 7578 5.931146 AGATGCTCTTAACTTTGAGACACAG 59.069 40.000 0.00 0.00 32.44 3.66
3719 7579 5.858381 AGATGCTCTTAACTTTGAGACACA 58.142 37.500 0.00 0.00 32.44 3.72
3720 7580 6.162777 AGAGATGCTCTTAACTTTGAGACAC 58.837 40.000 0.00 0.00 37.60 3.67
3721 7581 6.352016 AGAGATGCTCTTAACTTTGAGACA 57.648 37.500 0.00 0.00 37.60 3.41
3722 7582 7.985634 CTAGAGATGCTCTTAACTTTGAGAC 57.014 40.000 1.88 0.00 41.50 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.