Multiple sequence alignment - TraesCS2A01G363600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G363600 chr2A 100.000 4151 0 0 1 4151 607827067 607831217 0.000000e+00 7666.0
1 TraesCS2A01G363600 chr2A 87.981 208 22 3 2351 2556 117393213 117393007 4.150000e-60 243.0
2 TraesCS2A01G363600 chr2D 91.411 1630 89 22 2552 4151 466683641 466685249 0.000000e+00 2187.0
3 TraesCS2A01G363600 chr2D 84.152 896 65 34 819 1681 466682020 466682871 0.000000e+00 797.0
4 TraesCS2A01G363600 chr2D 95.592 363 15 1 1680 2041 466683056 466683418 7.740000e-162 580.0
5 TraesCS2A01G363600 chr2D 86.547 446 24 9 1 439 463879499 463879915 3.780000e-125 459.0
6 TraesCS2A01G363600 chr2D 91.250 240 15 4 580 818 466681512 466681746 5.180000e-84 322.0
7 TraesCS2A01G363600 chr2D 90.256 195 19 0 2352 2546 128025767 128025961 5.330000e-64 255.0
8 TraesCS2A01G363600 chr2D 90.503 179 14 1 1506 1681 466682816 466682994 2.500000e-57 233.0
9 TraesCS2A01G363600 chr2D 92.500 120 8 1 442 561 466680670 466680788 1.980000e-38 171.0
10 TraesCS2A01G363600 chr2D 95.238 63 3 0 1503 1565 466682936 466682998 2.640000e-17 100.0
11 TraesCS2A01G363600 chr2B 90.529 1626 93 24 2561 4151 545269804 545271403 0.000000e+00 2093.0
12 TraesCS2A01G363600 chr2B 86.826 1169 64 33 645 1747 545267940 545269084 0.000000e+00 1223.0
13 TraesCS2A01G363600 chr2B 86.733 701 58 17 1680 2350 545269100 545269795 0.000000e+00 747.0
14 TraesCS2A01G363600 chr2B 89.095 431 26 11 1 428 545267188 545267600 2.210000e-142 516.0
15 TraesCS2A01G363600 chr2B 90.000 220 16 4 451 666 545267706 545267923 3.160000e-71 279.0
16 TraesCS2A01G363600 chr2B 94.915 59 3 0 1503 1561 545268963 545269021 4.420000e-15 93.5
17 TraesCS2A01G363600 chr1D 85.465 516 43 14 2552 3040 211698490 211697980 3.700000e-140 508.0
18 TraesCS2A01G363600 chr1D 86.585 410 32 8 1958 2352 211698889 211698488 8.240000e-117 431.0
19 TraesCS2A01G363600 chr3B 83.902 410 43 8 1958 2352 486884481 486884882 1.820000e-98 370.0
20 TraesCS2A01G363600 chr3B 89.202 213 21 2 2825 3037 486895211 486895421 8.850000e-67 265.0
21 TraesCS2A01G363600 chr3B 82.034 295 26 23 2552 2820 486884880 486885173 4.180000e-55 226.0
22 TraesCS2A01G363600 chr3D 91.053 190 17 0 2357 2546 436020077 436020266 1.480000e-64 257.0
23 TraesCS2A01G363600 chr1A 87.560 209 24 2 2352 2560 404032363 404032569 1.490000e-59 241.0
24 TraesCS2A01G363600 chr1A 88.325 197 21 2 2351 2546 440899063 440899258 6.940000e-58 235.0
25 TraesCS2A01G363600 chr4B 88.718 195 21 1 2352 2546 173325481 173325288 1.930000e-58 237.0
26 TraesCS2A01G363600 chr5A 87.805 205 20 5 2352 2555 504722202 504722402 6.940000e-58 235.0
27 TraesCS2A01G363600 chr6B 88.000 200 21 3 2348 2546 536704331 536704528 2.500000e-57 233.0
28 TraesCS2A01G363600 chr7B 86.385 213 28 1 2352 2564 290835428 290835217 8.970000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G363600 chr2A 607827067 607831217 4150 False 7666.000000 7666 100.000000 1 4151 1 chr2A.!!$F1 4150
1 TraesCS2A01G363600 chr2D 466680670 466685249 4579 False 627.142857 2187 91.520857 442 4151 7 chr2D.!!$F3 3709
2 TraesCS2A01G363600 chr2B 545267188 545271403 4215 False 825.250000 2093 89.683000 1 4151 6 chr2B.!!$F1 4150
3 TraesCS2A01G363600 chr1D 211697980 211698889 909 True 469.500000 508 86.025000 1958 3040 2 chr1D.!!$R1 1082
4 TraesCS2A01G363600 chr3B 486884481 486885173 692 False 298.000000 370 82.968000 1958 2820 2 chr3B.!!$F2 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.108186 CAGATGCCAGCCTCGTTGTA 60.108 55.0 0.00 0.0 0.0 2.41 F
1124 2254 0.257328 TCTGCCTCTCCGACTCATCT 59.743 55.0 0.00 0.0 0.0 2.90 F
1758 3147 0.037232 GCCCTGTTGACGCTAACTCT 60.037 55.0 4.35 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1458 2623 0.040204 CCCAATCCCTTGCAAGAGGT 59.960 55.0 28.05 8.23 34.88 3.85 R
2504 3921 0.842635 AATAAGCTGCCTCTCCCCAG 59.157 55.0 0.00 0.00 0.00 4.45 R
3236 4681 0.249447 GCCCTGAACTTGCCAAACAC 60.249 55.0 0.00 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 0.108186 CAGATGCCAGCCTCGTTGTA 60.108 55.000 0.00 0.00 0.00 2.41
56 57 2.227865 GCCAGCCTCGTTGTAAATTTCA 59.772 45.455 0.00 0.00 0.00 2.69
65 66 4.979197 TCGTTGTAAATTTCAACCATGTGC 59.021 37.500 19.09 0.00 41.13 4.57
79 80 8.744568 TCAACCATGTGCATATGTTATTTCTA 57.255 30.769 20.40 0.00 0.00 2.10
80 81 8.839343 TCAACCATGTGCATATGTTATTTCTAG 58.161 33.333 20.40 5.97 0.00 2.43
81 82 7.206981 ACCATGTGCATATGTTATTTCTAGC 57.793 36.000 20.40 0.00 0.00 3.42
102 103 1.377856 GAAGCCTCTGGAGTTGGGC 60.378 63.158 0.00 0.00 44.38 5.36
116 117 2.359975 GGGCGGACCAGGTTCAAG 60.360 66.667 0.00 0.00 39.85 3.02
123 124 2.495084 GGACCAGGTTCAAGTTCACTC 58.505 52.381 0.00 0.00 0.00 3.51
133 134 0.882042 AAGTTCACTCTGGCTGTGCG 60.882 55.000 0.00 0.00 35.58 5.34
170 171 9.281371 GTATTTTGATTGAGATGATGAGATGGA 57.719 33.333 0.00 0.00 0.00 3.41
176 177 5.013258 TGAGATGATGAGATGGAGGATCT 57.987 43.478 0.00 0.00 44.78 2.75
180 181 6.743788 AGATGATGAGATGGAGGATCTGATA 58.256 40.000 0.00 0.00 41.91 2.15
188 189 3.106827 TGGAGGATCTGATACAGTTGCA 58.893 45.455 2.12 0.00 33.73 4.08
193 194 4.880120 AGGATCTGATACAGTTGCATTGTG 59.120 41.667 13.04 2.34 32.61 3.33
245 246 9.640963 ACTTCGTGTTAATAATCTGCTATATCC 57.359 33.333 0.00 0.00 0.00 2.59
248 249 7.966753 TCGTGTTAATAATCTGCTATATCCGAC 59.033 37.037 0.00 0.00 0.00 4.79
259 260 4.649674 TGCTATATCCGACCATATCCCTTC 59.350 45.833 0.00 0.00 0.00 3.46
286 287 5.622687 CGTTTGTTGGGTAAATAATGGTCCC 60.623 44.000 0.00 0.00 38.68 4.46
292 293 3.558533 GGGTAAATAATGGTCCCTAGGCG 60.559 52.174 2.05 0.00 35.63 5.52
293 294 2.951229 AAATAATGGTCCCTAGGCGG 57.049 50.000 2.05 0.00 0.00 6.13
294 295 0.400594 AATAATGGTCCCTAGGCGGC 59.599 55.000 2.05 0.00 0.00 6.53
295 296 1.489560 ATAATGGTCCCTAGGCGGCC 61.490 60.000 12.11 12.11 0.00 6.13
296 297 2.900269 TAATGGTCCCTAGGCGGCCA 62.900 60.000 23.09 21.43 34.79 5.36
298 299 3.723922 GGTCCCTAGGCGGCCAAA 61.724 66.667 23.09 7.91 0.00 3.28
299 300 2.437895 GTCCCTAGGCGGCCAAAC 60.438 66.667 23.09 7.59 0.00 2.93
300 301 2.609610 TCCCTAGGCGGCCAAACT 60.610 61.111 23.09 2.24 0.00 2.66
357 358 0.835941 AGCCTAGCCTTCTGTCCATG 59.164 55.000 0.00 0.00 0.00 3.66
367 368 3.500343 CTTCTGTCCATGTCCCCTTTTT 58.500 45.455 0.00 0.00 0.00 1.94
417 418 7.496529 TTCGTTTCTCACTTCTGATTGAAAT 57.503 32.000 0.00 0.00 33.79 2.17
421 422 8.474577 CGTTTCTCACTTCTGATTGAAATTTTG 58.525 33.333 0.00 0.00 33.79 2.44
422 423 7.935338 TTCTCACTTCTGATTGAAATTTTGC 57.065 32.000 0.00 0.00 33.79 3.68
423 424 6.144854 TCTCACTTCTGATTGAAATTTTGCG 58.855 36.000 0.00 0.00 33.79 4.85
425 426 4.984161 CACTTCTGATTGAAATTTTGCGGT 59.016 37.500 0.00 0.00 33.79 5.68
426 427 4.984161 ACTTCTGATTGAAATTTTGCGGTG 59.016 37.500 0.00 0.00 33.79 4.94
428 429 3.571828 TCTGATTGAAATTTTGCGGTGGA 59.428 39.130 0.00 0.00 0.00 4.02
429 430 4.038522 TCTGATTGAAATTTTGCGGTGGAA 59.961 37.500 0.00 0.00 0.00 3.53
430 431 4.892433 TGATTGAAATTTTGCGGTGGAAT 58.108 34.783 0.00 0.00 0.00 3.01
431 432 4.689812 TGATTGAAATTTTGCGGTGGAATG 59.310 37.500 0.00 0.00 0.00 2.67
435 436 3.483808 AATTTTGCGGTGGAATGGTTT 57.516 38.095 0.00 0.00 0.00 3.27
436 437 4.608948 AATTTTGCGGTGGAATGGTTTA 57.391 36.364 0.00 0.00 0.00 2.01
460 515 5.975988 ATACTTCCATTGGTCCTATGTGT 57.024 39.130 11.68 9.66 0.00 3.72
507 594 7.313646 TGTATCTGGAAAGTAAAGAACTCTCG 58.686 38.462 0.00 0.00 37.50 4.04
566 654 1.375551 GGTGGTCAACGGCGATTATT 58.624 50.000 16.62 0.00 0.00 1.40
670 1469 2.210961 GTCGCCTTCTACATTTAGGGC 58.789 52.381 0.00 0.00 32.13 5.19
671 1470 1.140252 TCGCCTTCTACATTTAGGGCC 59.860 52.381 0.00 0.00 31.90 5.80
674 1473 3.215151 GCCTTCTACATTTAGGGCCTTC 58.785 50.000 13.45 0.00 30.21 3.46
675 1474 3.821748 CCTTCTACATTTAGGGCCTTCC 58.178 50.000 13.45 0.00 0.00 3.46
676 1475 3.467803 CTTCTACATTTAGGGCCTTCCG 58.532 50.000 13.45 0.16 41.52 4.30
686 1517 3.047877 GCCTTCCGTTCCGTGTGG 61.048 66.667 0.00 0.00 0.00 4.17
716 1547 1.517257 CTCCTCGCCGTACAGCAAG 60.517 63.158 1.35 0.00 0.00 4.01
733 1564 9.004146 GTACAGCAAGAAGTACGTACTAAATAC 57.996 37.037 27.59 16.96 34.99 1.89
734 1565 7.824672 ACAGCAAGAAGTACGTACTAAATACT 58.175 34.615 27.59 18.73 34.99 2.12
735 1566 7.967303 ACAGCAAGAAGTACGTACTAAATACTC 59.033 37.037 27.59 19.34 34.99 2.59
736 1567 7.163845 CAGCAAGAAGTACGTACTAAATACTCG 59.836 40.741 27.59 12.66 34.99 4.18
830 1945 2.479412 AAGAGAGTCTCCACACGCGC 62.479 60.000 16.74 0.00 0.00 6.86
899 2023 1.883084 CACTGATTACGCGAGCCCC 60.883 63.158 15.93 0.00 0.00 5.80
900 2024 2.355986 ACTGATTACGCGAGCCCCA 61.356 57.895 15.93 2.81 0.00 4.96
901 2025 1.153449 CTGATTACGCGAGCCCCAA 60.153 57.895 15.93 0.00 0.00 4.12
902 2026 1.153449 TGATTACGCGAGCCCCAAG 60.153 57.895 15.93 0.00 0.00 3.61
903 2027 1.887707 GATTACGCGAGCCCCAAGG 60.888 63.158 15.93 0.00 0.00 3.61
1087 2217 3.127352 GAGATCGTCGCCTCCGCTT 62.127 63.158 3.91 0.00 0.00 4.68
1109 2239 0.729816 GTCGTCGTCTTCAGGTCTGC 60.730 60.000 0.00 0.00 0.00 4.26
1110 2240 1.444553 CGTCGTCTTCAGGTCTGCC 60.445 63.158 0.00 0.00 0.00 4.85
1115 2245 0.534873 GTCTTCAGGTCTGCCTCTCC 59.465 60.000 0.00 0.00 44.97 3.71
1116 2246 0.967887 TCTTCAGGTCTGCCTCTCCG 60.968 60.000 0.00 0.00 44.97 4.63
1117 2247 0.967887 CTTCAGGTCTGCCTCTCCGA 60.968 60.000 0.00 0.00 44.97 4.55
1118 2248 1.251527 TTCAGGTCTGCCTCTCCGAC 61.252 60.000 0.00 0.00 44.97 4.79
1119 2249 1.680651 CAGGTCTGCCTCTCCGACT 60.681 63.158 0.00 0.00 44.97 4.18
1120 2250 1.379309 AGGTCTGCCTCTCCGACTC 60.379 63.158 0.00 0.00 42.67 3.36
1121 2251 1.679305 GGTCTGCCTCTCCGACTCA 60.679 63.158 0.00 0.00 0.00 3.41
1124 2254 0.257328 TCTGCCTCTCCGACTCATCT 59.743 55.000 0.00 0.00 0.00 2.90
1135 2275 1.817740 CGACTCATCTCCCCTCTCTCC 60.818 61.905 0.00 0.00 0.00 3.71
1136 2276 1.216678 GACTCATCTCCCCTCTCTCCA 59.783 57.143 0.00 0.00 0.00 3.86
1218 2367 4.662278 TGTGATAAGAACTGAAAAGGGGG 58.338 43.478 0.00 0.00 0.00 5.40
1219 2368 3.444034 GTGATAAGAACTGAAAAGGGGGC 59.556 47.826 0.00 0.00 0.00 5.80
1221 2370 1.179174 AAGAACTGAAAAGGGGGCGC 61.179 55.000 0.00 0.00 0.00 6.53
1229 2384 3.774599 AAAGGGGGCGCGGATGATC 62.775 63.158 8.83 0.00 0.00 2.92
1231 2386 4.996434 GGGGGCGCGGATGATCAG 62.996 72.222 8.83 0.00 0.00 2.90
1267 2422 4.747108 CACTAGTTCCGCATCTTATCCTTG 59.253 45.833 0.00 0.00 0.00 3.61
1279 2434 5.437191 TCTTATCCTTGGTCTTCTTTCCC 57.563 43.478 0.00 0.00 0.00 3.97
1281 2436 1.827792 TCCTTGGTCTTCTTTCCCCA 58.172 50.000 0.00 0.00 0.00 4.96
1282 2437 2.358258 TCCTTGGTCTTCTTTCCCCAT 58.642 47.619 0.00 0.00 0.00 4.00
1283 2438 2.308866 TCCTTGGTCTTCTTTCCCCATC 59.691 50.000 0.00 0.00 0.00 3.51
1419 2584 6.408869 CCAAATCCTATTGGCTTGTTTGAAT 58.591 36.000 11.54 0.00 43.11 2.57
1422 2587 5.659440 TCCTATTGGCTTGTTTGAATTCC 57.341 39.130 2.27 0.00 0.00 3.01
1459 2624 5.993106 CTTGAAATTAAGGATCCTCGGAC 57.007 43.478 16.52 5.77 0.00 4.79
1460 2625 4.417426 TGAAATTAAGGATCCTCGGACC 57.583 45.455 16.52 4.00 0.00 4.46
1461 2626 4.037927 TGAAATTAAGGATCCTCGGACCT 58.962 43.478 16.52 0.00 35.36 3.85
1462 2627 4.101119 TGAAATTAAGGATCCTCGGACCTC 59.899 45.833 16.52 8.56 33.16 3.85
1477 2642 0.040204 ACCTCTTGCAAGGGATTGGG 59.960 55.000 28.25 19.03 41.04 4.12
1479 2644 1.467920 CTCTTGCAAGGGATTGGGAC 58.532 55.000 22.43 0.00 0.00 4.46
1589 2894 5.516044 TGAGCTTAACTACTACTCCATCCA 58.484 41.667 0.00 0.00 0.00 3.41
1608 2913 8.966868 TCCATCCATTCCAAAGTAAATTAAGTC 58.033 33.333 0.00 0.00 0.00 3.01
1610 2915 9.793252 CATCCATTCCAAAGTAAATTAAGTCTG 57.207 33.333 0.00 0.00 0.00 3.51
1635 2940 6.256975 GGTGGTTTTGGTTCAAGTTTTATGTC 59.743 38.462 0.00 0.00 0.00 3.06
1640 2945 3.312973 TGGTTCAAGTTTTATGTCGCGTT 59.687 39.130 5.77 0.00 0.00 4.84
1651 2956 9.698617 AGTTTTATGTCGCGTTCTAAATATTTC 57.301 29.630 5.77 0.00 0.00 2.17
1758 3147 0.037232 GCCCTGTTGACGCTAACTCT 60.037 55.000 4.35 0.00 0.00 3.24
1813 3202 3.136626 AGTCTTACTGCCCTTTCTGTGTT 59.863 43.478 0.00 0.00 0.00 3.32
1829 3218 4.094887 TCTGTGTTCAAGTGAAGAAGTTGC 59.905 41.667 0.00 0.00 38.84 4.17
1859 3248 1.172180 TGGAGCAAGTTTCAAGGCCG 61.172 55.000 0.00 0.00 0.00 6.13
1865 3254 1.946768 CAAGTTTCAAGGCCGTTGAGA 59.053 47.619 14.59 9.77 46.09 3.27
1971 3371 0.678950 CACGGGCTCCCAACAATTTT 59.321 50.000 5.70 0.00 35.37 1.82
2016 3417 1.033746 CCTGCATCCGGATGTTGCTT 61.034 55.000 37.88 5.93 39.84 3.91
2026 3427 3.554524 CGGATGTTGCTTTGTACTGTTG 58.445 45.455 0.00 0.00 0.00 3.33
2041 3442 4.468095 ACTGTTGCGTTGAAATAGTGTC 57.532 40.909 0.00 0.00 29.07 3.67
2046 3447 3.472652 TGCGTTGAAATAGTGTCCTTGT 58.527 40.909 0.00 0.00 0.00 3.16
2093 3494 6.314400 CAGGTTATTTTCCTGCATTTGGATTG 59.686 38.462 0.00 0.00 44.46 2.67
2125 3526 8.012809 TGTACTGTTTTGTTGAAATACTATGCG 58.987 33.333 0.00 0.00 0.00 4.73
2137 3538 8.911918 TGAAATACTATGCGTATTGGGTTTAT 57.088 30.769 0.00 0.00 45.65 1.40
2142 3543 3.275617 TGCGTATTGGGTTTATGAGCT 57.724 42.857 0.00 0.00 0.00 4.09
2186 3588 8.801299 TGGAAAAGAATTTAATATGACAGCACA 58.199 29.630 0.00 0.00 37.28 4.57
2197 3599 9.770097 TTAATATGACAGCACAATTTTTGGAAA 57.230 25.926 0.00 0.00 34.12 3.13
2199 3601 6.607735 ATGACAGCACAATTTTTGGAAAAG 57.392 33.333 0.00 0.00 34.12 2.27
2200 3602 5.728471 TGACAGCACAATTTTTGGAAAAGA 58.272 33.333 0.00 0.00 34.12 2.52
2201 3603 6.347696 TGACAGCACAATTTTTGGAAAAGAT 58.652 32.000 0.00 0.00 34.12 2.40
2202 3604 6.822676 TGACAGCACAATTTTTGGAAAAGATT 59.177 30.769 0.00 0.00 34.12 2.40
2218 3632 7.387948 TGGAAAAGATTTCAGTAAGCTCACTAC 59.612 37.037 0.00 0.00 29.38 2.73
2238 3652 7.066525 TCACTACGTAATGATGTGAGTGTGATA 59.933 37.037 1.95 0.00 33.45 2.15
2252 3666 6.820656 GTGAGTGTGATATCAAATCTCTTGGT 59.179 38.462 22.15 0.00 0.00 3.67
2275 3689 5.886960 AGCTTTGATGATTGGTTAGACAC 57.113 39.130 0.00 0.00 0.00 3.67
2278 3692 6.435277 AGCTTTGATGATTGGTTAGACACATT 59.565 34.615 0.00 0.00 0.00 2.71
2300 3714 8.416329 ACATTAAGAAGCAATTGAGTTTTCTGT 58.584 29.630 10.34 4.88 0.00 3.41
2301 3715 9.252962 CATTAAGAAGCAATTGAGTTTTCTGTT 57.747 29.630 10.34 1.77 0.00 3.16
2323 3740 4.590850 AACAAAGAAGCAATTGAGGTCC 57.409 40.909 10.34 0.00 0.00 4.46
2330 3747 1.642762 AGCAATTGAGGTCCCAAGGAT 59.357 47.619 10.34 0.00 32.73 3.24
2336 3753 0.991920 GAGGTCCCAAGGATCCAACA 59.008 55.000 15.82 0.00 32.20 3.33
2351 3768 7.805163 AGGATCCAACAATGAATCACTATGTA 58.195 34.615 15.82 0.00 0.00 2.29
2352 3769 7.935755 AGGATCCAACAATGAATCACTATGTAG 59.064 37.037 15.82 0.00 0.00 2.74
2353 3770 7.173907 GGATCCAACAATGAATCACTATGTAGG 59.826 40.741 6.95 0.00 0.00 3.18
2354 3771 6.356556 TCCAACAATGAATCACTATGTAGGG 58.643 40.000 0.00 0.00 0.00 3.53
2355 3772 5.532406 CCAACAATGAATCACTATGTAGGGG 59.468 44.000 0.00 0.00 0.00 4.79
2356 3773 4.718961 ACAATGAATCACTATGTAGGGGC 58.281 43.478 0.00 0.00 0.00 5.80
2357 3774 4.165950 ACAATGAATCACTATGTAGGGGCA 59.834 41.667 0.00 0.00 0.00 5.36
2358 3775 4.630644 ATGAATCACTATGTAGGGGCAG 57.369 45.455 0.00 0.00 0.00 4.85
2359 3776 2.104792 TGAATCACTATGTAGGGGCAGC 59.895 50.000 0.00 0.00 0.00 5.25
2360 3777 2.109229 ATCACTATGTAGGGGCAGCT 57.891 50.000 0.00 0.00 0.00 4.24
2361 3778 1.414158 TCACTATGTAGGGGCAGCTC 58.586 55.000 0.00 0.00 0.00 4.09
2362 3779 1.062886 TCACTATGTAGGGGCAGCTCT 60.063 52.381 0.00 0.00 0.00 4.09
2363 3780 1.765314 CACTATGTAGGGGCAGCTCTT 59.235 52.381 0.00 0.00 0.00 2.85
2364 3781 2.171448 CACTATGTAGGGGCAGCTCTTT 59.829 50.000 0.00 0.00 0.00 2.52
2365 3782 2.846827 ACTATGTAGGGGCAGCTCTTTT 59.153 45.455 0.00 0.00 0.00 2.27
2366 3783 2.134789 ATGTAGGGGCAGCTCTTTTG 57.865 50.000 0.00 0.00 0.00 2.44
2367 3784 0.038166 TGTAGGGGCAGCTCTTTTGG 59.962 55.000 0.00 0.00 0.00 3.28
2368 3785 1.000896 TAGGGGCAGCTCTTTTGGC 60.001 57.895 0.00 0.00 40.11 4.52
2369 3786 1.788518 TAGGGGCAGCTCTTTTGGCA 61.789 55.000 0.00 0.00 42.38 4.92
2370 3787 2.643232 GGGGCAGCTCTTTTGGCAG 61.643 63.158 0.00 0.00 42.38 4.85
2371 3788 2.260743 GGCAGCTCTTTTGGCAGC 59.739 61.111 0.00 0.00 40.50 5.25
2373 3790 1.664306 GCAGCTCTTTTGGCAGCTT 59.336 52.632 0.00 0.00 43.80 3.74
2374 3791 0.883833 GCAGCTCTTTTGGCAGCTTA 59.116 50.000 0.00 0.00 43.80 3.09
2375 3792 1.270550 GCAGCTCTTTTGGCAGCTTAA 59.729 47.619 0.00 0.00 43.80 1.85
2376 3793 2.288395 GCAGCTCTTTTGGCAGCTTAAA 60.288 45.455 0.00 0.00 43.80 1.52
2377 3794 3.799917 GCAGCTCTTTTGGCAGCTTAAAA 60.800 43.478 0.00 0.33 43.80 1.52
2378 3795 4.370917 CAGCTCTTTTGGCAGCTTAAAAA 58.629 39.130 8.69 5.67 43.80 1.94
2399 3816 5.780958 AAATAAGCCACCTTCTTCCTAGT 57.219 39.130 0.00 0.00 32.47 2.57
2400 3817 5.780958 AATAAGCCACCTTCTTCCTAGTT 57.219 39.130 0.00 0.00 32.47 2.24
2401 3818 5.780958 ATAAGCCACCTTCTTCCTAGTTT 57.219 39.130 0.00 0.00 32.47 2.66
2402 3819 4.455070 AAGCCACCTTCTTCCTAGTTTT 57.545 40.909 0.00 0.00 0.00 2.43
2403 3820 4.455070 AGCCACCTTCTTCCTAGTTTTT 57.545 40.909 0.00 0.00 0.00 1.94
2404 3821 4.399219 AGCCACCTTCTTCCTAGTTTTTC 58.601 43.478 0.00 0.00 0.00 2.29
2405 3822 3.506455 GCCACCTTCTTCCTAGTTTTTCC 59.494 47.826 0.00 0.00 0.00 3.13
2406 3823 4.750096 GCCACCTTCTTCCTAGTTTTTCCT 60.750 45.833 0.00 0.00 0.00 3.36
2407 3824 5.514310 GCCACCTTCTTCCTAGTTTTTCCTA 60.514 44.000 0.00 0.00 0.00 2.94
2408 3825 6.722328 CCACCTTCTTCCTAGTTTTTCCTAT 58.278 40.000 0.00 0.00 0.00 2.57
2409 3826 7.582828 GCCACCTTCTTCCTAGTTTTTCCTATA 60.583 40.741 0.00 0.00 0.00 1.31
2410 3827 8.326529 CCACCTTCTTCCTAGTTTTTCCTATAA 58.673 37.037 0.00 0.00 0.00 0.98
2411 3828 9.384764 CACCTTCTTCCTAGTTTTTCCTATAAG 57.615 37.037 0.00 0.00 0.00 1.73
2412 3829 8.047911 ACCTTCTTCCTAGTTTTTCCTATAAGC 58.952 37.037 0.00 0.00 0.00 3.09
2413 3830 7.499563 CCTTCTTCCTAGTTTTTCCTATAAGCC 59.500 40.741 0.00 0.00 0.00 4.35
2414 3831 7.750947 TCTTCCTAGTTTTTCCTATAAGCCT 57.249 36.000 0.00 0.00 0.00 4.58
2415 3832 8.159229 TCTTCCTAGTTTTTCCTATAAGCCTT 57.841 34.615 0.00 0.00 0.00 4.35
2416 3833 8.265764 TCTTCCTAGTTTTTCCTATAAGCCTTC 58.734 37.037 0.00 0.00 0.00 3.46
2417 3834 7.750947 TCCTAGTTTTTCCTATAAGCCTTCT 57.249 36.000 0.00 0.00 0.00 2.85
2418 3835 7.793036 TCCTAGTTTTTCCTATAAGCCTTCTC 58.207 38.462 0.00 0.00 0.00 2.87
2419 3836 7.624077 TCCTAGTTTTTCCTATAAGCCTTCTCT 59.376 37.037 0.00 0.00 0.00 3.10
2420 3837 7.929245 CCTAGTTTTTCCTATAAGCCTTCTCTC 59.071 40.741 0.00 0.00 0.00 3.20
2421 3838 7.503492 AGTTTTTCCTATAAGCCTTCTCTCT 57.497 36.000 0.00 0.00 0.00 3.10
2422 3839 7.923461 AGTTTTTCCTATAAGCCTTCTCTCTT 58.077 34.615 0.00 0.00 0.00 2.85
2423 3840 9.047947 AGTTTTTCCTATAAGCCTTCTCTCTTA 57.952 33.333 0.00 0.00 0.00 2.10
2424 3841 9.839817 GTTTTTCCTATAAGCCTTCTCTCTTAT 57.160 33.333 0.00 0.00 38.57 1.73
2427 3844 8.783660 TTCCTATAAGCCTTCTCTCTTATTCA 57.216 34.615 0.00 0.00 36.95 2.57
2428 3845 8.964533 TCCTATAAGCCTTCTCTCTTATTCAT 57.035 34.615 0.00 0.00 36.95 2.57
2429 3846 9.030452 TCCTATAAGCCTTCTCTCTTATTCATC 57.970 37.037 0.00 0.00 36.95 2.92
2430 3847 7.973388 CCTATAAGCCTTCTCTCTTATTCATCG 59.027 40.741 0.00 0.00 36.95 3.84
2431 3848 4.599047 AGCCTTCTCTCTTATTCATCGG 57.401 45.455 0.00 0.00 0.00 4.18
2432 3849 3.323403 AGCCTTCTCTCTTATTCATCGGG 59.677 47.826 0.00 0.00 0.00 5.14
2433 3850 3.556004 GCCTTCTCTCTTATTCATCGGGG 60.556 52.174 0.00 0.00 0.00 5.73
2434 3851 3.556004 CCTTCTCTCTTATTCATCGGGGC 60.556 52.174 0.00 0.00 0.00 5.80
2435 3852 2.964209 TCTCTCTTATTCATCGGGGCT 58.036 47.619 0.00 0.00 0.00 5.19
2436 3853 3.309296 TCTCTCTTATTCATCGGGGCTT 58.691 45.455 0.00 0.00 0.00 4.35
2437 3854 3.322254 TCTCTCTTATTCATCGGGGCTTC 59.678 47.826 0.00 0.00 0.00 3.86
2438 3855 3.309296 TCTCTTATTCATCGGGGCTTCT 58.691 45.455 0.00 0.00 0.00 2.85
2439 3856 4.480115 TCTCTTATTCATCGGGGCTTCTA 58.520 43.478 0.00 0.00 0.00 2.10
2440 3857 4.899457 TCTCTTATTCATCGGGGCTTCTAA 59.101 41.667 0.00 0.00 0.00 2.10
2441 3858 5.365605 TCTCTTATTCATCGGGGCTTCTAAA 59.634 40.000 0.00 0.00 0.00 1.85
2442 3859 6.043243 TCTCTTATTCATCGGGGCTTCTAAAT 59.957 38.462 0.00 0.00 0.00 1.40
2443 3860 6.601332 TCTTATTCATCGGGGCTTCTAAATT 58.399 36.000 0.00 0.00 0.00 1.82
2444 3861 7.741785 TCTTATTCATCGGGGCTTCTAAATTA 58.258 34.615 0.00 0.00 0.00 1.40
2445 3862 7.878127 TCTTATTCATCGGGGCTTCTAAATTAG 59.122 37.037 0.00 0.00 0.00 1.73
2446 3863 5.367945 TTCATCGGGGCTTCTAAATTAGT 57.632 39.130 0.00 0.00 0.00 2.24
2447 3864 5.367945 TCATCGGGGCTTCTAAATTAGTT 57.632 39.130 0.00 0.00 0.00 2.24
2448 3865 6.488769 TCATCGGGGCTTCTAAATTAGTTA 57.511 37.500 0.00 0.00 0.00 2.24
2449 3866 7.074653 TCATCGGGGCTTCTAAATTAGTTAT 57.925 36.000 0.00 0.00 0.00 1.89
2450 3867 6.934645 TCATCGGGGCTTCTAAATTAGTTATG 59.065 38.462 0.00 0.00 0.00 1.90
2451 3868 5.617252 TCGGGGCTTCTAAATTAGTTATGG 58.383 41.667 0.00 0.00 0.00 2.74
2452 3869 4.760204 CGGGGCTTCTAAATTAGTTATGGG 59.240 45.833 0.00 0.00 0.00 4.00
2453 3870 5.455612 CGGGGCTTCTAAATTAGTTATGGGA 60.456 44.000 0.00 0.00 0.00 4.37
2454 3871 6.552932 GGGGCTTCTAAATTAGTTATGGGAT 58.447 40.000 0.00 0.00 0.00 3.85
2455 3872 7.528205 CGGGGCTTCTAAATTAGTTATGGGATA 60.528 40.741 0.00 0.00 0.00 2.59
2456 3873 8.168058 GGGGCTTCTAAATTAGTTATGGGATAA 58.832 37.037 0.00 0.00 0.00 1.75
2457 3874 9.582648 GGGCTTCTAAATTAGTTATGGGATAAA 57.417 33.333 0.00 0.00 0.00 1.40
2488 3905 9.677567 TTAGAAGTCTCAACAAATTTTATGTGC 57.322 29.630 0.00 0.00 0.00 4.57
2489 3906 6.857964 AGAAGTCTCAACAAATTTTATGTGCG 59.142 34.615 0.00 0.00 0.00 5.34
2490 3907 5.460646 AGTCTCAACAAATTTTATGTGCGG 58.539 37.500 0.00 0.00 0.00 5.69
2491 3908 4.089923 GTCTCAACAAATTTTATGTGCGGC 59.910 41.667 0.00 0.00 0.00 6.53
2492 3909 4.022416 TCTCAACAAATTTTATGTGCGGCT 60.022 37.500 0.00 0.00 0.00 5.52
2493 3910 4.626042 TCAACAAATTTTATGTGCGGCTT 58.374 34.783 0.00 0.00 0.00 4.35
2494 3911 5.773575 TCAACAAATTTTATGTGCGGCTTA 58.226 33.333 0.00 0.00 0.00 3.09
2495 3912 6.393990 TCAACAAATTTTATGTGCGGCTTAT 58.606 32.000 0.00 0.00 0.00 1.73
2496 3913 6.870965 TCAACAAATTTTATGTGCGGCTTATT 59.129 30.769 0.00 0.00 0.00 1.40
2497 3914 7.386299 TCAACAAATTTTATGTGCGGCTTATTT 59.614 29.630 0.00 0.00 0.00 1.40
2498 3915 7.665561 ACAAATTTTATGTGCGGCTTATTTT 57.334 28.000 0.00 0.00 0.00 1.82
2499 3916 8.764524 ACAAATTTTATGTGCGGCTTATTTTA 57.235 26.923 0.00 0.00 0.00 1.52
2500 3917 9.377312 ACAAATTTTATGTGCGGCTTATTTTAT 57.623 25.926 0.00 0.00 0.00 1.40
2504 3921 8.568732 TTTTATGTGCGGCTTATTTTATAAGC 57.431 30.769 18.55 18.55 46.64 3.09
2505 3922 7.504924 TTATGTGCGGCTTATTTTATAAGCT 57.495 32.000 23.24 10.73 46.58 3.74
2511 3928 5.966742 GGCTTATTTTATAAGCTGGGGAG 57.033 43.478 23.24 0.00 46.58 4.30
2512 3929 5.631119 GGCTTATTTTATAAGCTGGGGAGA 58.369 41.667 23.24 0.00 46.58 3.71
2513 3930 5.707764 GGCTTATTTTATAAGCTGGGGAGAG 59.292 44.000 23.24 0.00 46.58 3.20
2514 3931 5.707764 GCTTATTTTATAAGCTGGGGAGAGG 59.292 44.000 19.18 0.00 44.64 3.69
2515 3932 3.577805 TTTTATAAGCTGGGGAGAGGC 57.422 47.619 0.00 0.00 0.00 4.70
2516 3933 2.190398 TTATAAGCTGGGGAGAGGCA 57.810 50.000 0.00 0.00 0.00 4.75
2517 3934 1.722034 TATAAGCTGGGGAGAGGCAG 58.278 55.000 0.00 0.00 0.00 4.85
2518 3935 1.704007 ATAAGCTGGGGAGAGGCAGC 61.704 60.000 0.00 0.00 40.66 5.25
2519 3936 4.737476 AGCTGGGGAGAGGCAGCT 62.737 66.667 0.00 0.00 45.07 4.24
2520 3937 3.726144 GCTGGGGAGAGGCAGCTT 61.726 66.667 0.00 0.00 37.66 3.74
2521 3938 2.370445 GCTGGGGAGAGGCAGCTTA 61.370 63.158 0.00 0.00 37.66 3.09
2522 3939 1.704007 GCTGGGGAGAGGCAGCTTAT 61.704 60.000 0.00 0.00 37.66 1.73
2523 3940 0.842635 CTGGGGAGAGGCAGCTTATT 59.157 55.000 0.00 0.00 0.00 1.40
2524 3941 1.213926 CTGGGGAGAGGCAGCTTATTT 59.786 52.381 0.00 0.00 0.00 1.40
2525 3942 1.640670 TGGGGAGAGGCAGCTTATTTT 59.359 47.619 0.00 0.00 0.00 1.82
2526 3943 2.042979 TGGGGAGAGGCAGCTTATTTTT 59.957 45.455 0.00 0.00 0.00 1.94
2545 3962 5.777850 TTTTTAAGCCGCCTAAAAGAACT 57.222 34.783 6.93 0.00 0.00 3.01
2546 3963 6.880942 TTTTTAAGCCGCCTAAAAGAACTA 57.119 33.333 6.93 0.00 0.00 2.24
2547 3964 6.490566 TTTTAAGCCGCCTAAAAGAACTAG 57.509 37.500 3.26 0.00 0.00 2.57
2548 3965 3.975168 AAGCCGCCTAAAAGAACTAGA 57.025 42.857 0.00 0.00 0.00 2.43
2549 3966 3.248495 AGCCGCCTAAAAGAACTAGAC 57.752 47.619 0.00 0.00 0.00 2.59
2550 3967 2.093606 AGCCGCCTAAAAGAACTAGACC 60.094 50.000 0.00 0.00 0.00 3.85
2551 3968 2.537401 CCGCCTAAAAGAACTAGACCG 58.463 52.381 0.00 0.00 0.00 4.79
2552 3969 2.094338 CCGCCTAAAAGAACTAGACCGT 60.094 50.000 0.00 0.00 0.00 4.83
2556 3973 5.231568 CGCCTAAAAGAACTAGACCGTAATG 59.768 44.000 0.00 0.00 0.00 1.90
2557 3974 6.335777 GCCTAAAAGAACTAGACCGTAATGA 58.664 40.000 0.00 0.00 0.00 2.57
2563 3980 6.585695 AGAACTAGACCGTAATGAAAGTGA 57.414 37.500 0.00 0.00 0.00 3.41
2582 3999 6.653526 AGTGATATCATCAGAACCTCAGAG 57.346 41.667 9.02 0.00 40.53 3.35
2589 4006 7.581213 ATCATCAGAACCTCAGAGTAGTTAG 57.419 40.000 0.00 0.00 0.00 2.34
2635 4052 5.458779 GCTATGAGCAAAACACGTTTCTTTT 59.541 36.000 0.00 0.00 41.89 2.27
2636 4053 6.635239 GCTATGAGCAAAACACGTTTCTTTTA 59.365 34.615 0.00 0.00 41.89 1.52
2637 4054 7.149128 GCTATGAGCAAAACACGTTTCTTTTAG 60.149 37.037 0.00 0.00 41.89 1.85
2638 4055 6.184580 TGAGCAAAACACGTTTCTTTTAGA 57.815 33.333 0.00 0.00 31.45 2.10
2639 4056 6.791303 TGAGCAAAACACGTTTCTTTTAGAT 58.209 32.000 0.00 0.00 31.45 1.98
2680 4123 2.159947 CGCTACTACTCATCTACGCTCG 60.160 54.545 0.00 0.00 0.00 5.03
2689 4133 4.095932 ACTCATCTACGCTCGTGATAAACA 59.904 41.667 5.05 0.00 0.00 2.83
2755 4199 1.271127 TTGGGATGATCGGCACAGGA 61.271 55.000 0.00 0.00 0.00 3.86
2774 4219 4.944317 CAGGACTTGGGAGAAACCTTATTC 59.056 45.833 0.00 0.00 38.98 1.75
2946 4391 8.134895 ACAACCATGTTAAACTGTTGATTGTAG 58.865 33.333 13.45 0.00 38.81 2.74
2984 4429 0.717224 GCAGCAAATTCCATTGTGCG 59.283 50.000 0.00 0.00 41.90 5.34
2987 4432 1.203052 AGCAAATTCCATTGTGCGAGG 59.797 47.619 0.00 0.00 41.90 4.63
2988 4433 1.632422 CAAATTCCATTGTGCGAGGC 58.368 50.000 0.00 0.00 0.00 4.70
2989 4434 1.203052 CAAATTCCATTGTGCGAGGCT 59.797 47.619 0.00 0.00 0.00 4.58
3153 4598 0.320771 CCACCGTCACTGCTTAGCTT 60.321 55.000 5.60 0.00 0.00 3.74
3168 4613 2.939460 AGCTTTGTTTGCGAGTTGTT 57.061 40.000 0.00 0.00 35.28 2.83
3204 4649 6.262049 TGTTAGTGTGTTACATGAGTTGCATT 59.738 34.615 0.00 0.00 34.15 3.56
3366 4811 2.419667 ACCCCAAATTACTGTCGTTCG 58.580 47.619 0.00 0.00 0.00 3.95
3407 4855 4.761739 CACTCTTTATTGTTTCCCTGCTGA 59.238 41.667 0.00 0.00 0.00 4.26
3446 4894 6.016276 ACGTTTAAGGCAGAATTCAGTTTCAT 60.016 34.615 8.44 0.00 0.00 2.57
3447 4895 6.306356 CGTTTAAGGCAGAATTCAGTTTCATG 59.694 38.462 8.44 0.00 0.00 3.07
3448 4896 7.370383 GTTTAAGGCAGAATTCAGTTTCATGA 58.630 34.615 8.44 0.00 0.00 3.07
3462 4924 4.694509 AGTTTCATGACAGAATCTGCAGAC 59.305 41.667 20.97 7.48 34.37 3.51
3482 4961 2.290197 ACCAATTTTTCTACCGCCGGTA 60.290 45.455 16.33 16.33 37.09 4.02
3499 4978 2.671070 CGGTAACCAAGCATTTTCAGGC 60.671 50.000 0.00 0.00 0.00 4.85
3615 5094 2.036731 ATCCACCACTCCGTCCGA 59.963 61.111 0.00 0.00 0.00 4.55
3881 5360 3.723348 GGCAAAGACGTCGGGCAC 61.723 66.667 23.58 13.36 0.00 5.01
3897 5376 1.709760 CACGGCGTACAATCTGCAG 59.290 57.895 14.22 7.63 0.00 4.41
3903 5382 2.100631 GTACAATCTGCAGCGCCGT 61.101 57.895 9.47 6.00 0.00 5.68
3967 5446 2.292267 CCTGCGGCTTATTCATGTCTT 58.708 47.619 0.00 0.00 0.00 3.01
3969 5448 2.016318 TGCGGCTTATTCATGTCTTGG 58.984 47.619 0.00 0.00 0.00 3.61
3970 5449 2.017049 GCGGCTTATTCATGTCTTGGT 58.983 47.619 0.00 0.00 0.00 3.67
3977 5456 1.514678 TTCATGTCTTGGTGGTGCGC 61.515 55.000 0.00 0.00 0.00 6.09
3978 5457 3.049674 ATGTCTTGGTGGTGCGCG 61.050 61.111 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.968017 CTTTTCCCGCAGCTGCTGA 60.968 57.895 34.22 26.64 39.32 4.26
35 36 2.227865 TGAAATTTACAACGAGGCTGGC 59.772 45.455 0.00 0.00 0.00 4.85
49 50 9.669887 AATAACATATGCACATGGTTGAAATTT 57.330 25.926 10.24 0.00 0.00 1.82
56 57 7.503566 AGCTAGAAATAACATATGCACATGGTT 59.496 33.333 10.24 5.12 0.00 3.67
65 66 6.939163 AGGCTTCCAGCTAGAAATAACATATG 59.061 38.462 0.00 0.00 41.99 1.78
79 80 0.839853 AACTCCAGAGGCTTCCAGCT 60.840 55.000 0.00 0.00 41.99 4.24
80 81 0.676151 CAACTCCAGAGGCTTCCAGC 60.676 60.000 0.00 0.00 41.46 4.85
81 82 0.035630 CCAACTCCAGAGGCTTCCAG 60.036 60.000 0.00 0.00 0.00 3.86
102 103 1.202651 AGTGAACTTGAACCTGGTCCG 60.203 52.381 0.00 0.00 0.00 4.79
116 117 2.959357 GCGCACAGCCAGAGTGAAC 61.959 63.158 0.30 0.00 39.30 3.18
133 134 5.320723 TCAATCAAAATACGTGACGAATGC 58.679 37.500 13.70 0.00 0.00 3.56
170 171 4.880120 CACAATGCAACTGTATCAGATCCT 59.120 41.667 4.62 0.00 35.18 3.24
176 177 3.749226 TCCACACAATGCAACTGTATCA 58.251 40.909 4.62 0.00 0.00 2.15
180 181 1.067516 GCTTCCACACAATGCAACTGT 59.932 47.619 0.00 0.00 0.00 3.55
188 189 6.482973 CCTTACAAAAATTGCTTCCACACAAT 59.517 34.615 0.00 0.00 38.11 2.71
193 194 3.745975 GGCCTTACAAAAATTGCTTCCAC 59.254 43.478 0.00 0.00 0.00 4.02
259 260 3.555917 TTATTTACCCAACAAACGCCG 57.444 42.857 0.00 0.00 0.00 6.46
286 287 0.824759 AGTCTAGTTTGGCCGCCTAG 59.175 55.000 11.61 14.07 0.00 3.02
292 293 4.079253 TCCATTCAAAGTCTAGTTTGGCC 58.921 43.478 9.74 0.00 37.89 5.36
293 294 4.762251 AGTCCATTCAAAGTCTAGTTTGGC 59.238 41.667 9.74 0.00 37.89 4.52
294 295 6.486657 TGAAGTCCATTCAAAGTCTAGTTTGG 59.513 38.462 9.74 0.00 45.00 3.28
295 296 7.496529 TGAAGTCCATTCAAAGTCTAGTTTG 57.503 36.000 4.24 4.24 45.00 2.93
324 325 7.835181 AGAAGGCTAGGCTAATAATCTACGTAT 59.165 37.037 20.55 0.00 0.00 3.06
327 328 6.071840 ACAGAAGGCTAGGCTAATAATCTACG 60.072 42.308 20.55 9.49 0.00 3.51
328 329 7.234661 ACAGAAGGCTAGGCTAATAATCTAC 57.765 40.000 20.55 3.33 0.00 2.59
329 330 6.437793 GGACAGAAGGCTAGGCTAATAATCTA 59.562 42.308 20.55 0.00 0.00 1.98
330 331 5.247337 GGACAGAAGGCTAGGCTAATAATCT 59.753 44.000 20.55 14.96 0.00 2.40
331 332 5.012148 TGGACAGAAGGCTAGGCTAATAATC 59.988 44.000 20.55 12.81 0.00 1.75
332 333 4.907875 TGGACAGAAGGCTAGGCTAATAAT 59.092 41.667 20.55 2.71 0.00 1.28
334 335 3.923648 TGGACAGAAGGCTAGGCTAATA 58.076 45.455 20.55 0.00 0.00 0.98
335 336 2.764269 TGGACAGAAGGCTAGGCTAAT 58.236 47.619 20.55 8.33 0.00 1.73
336 337 2.247699 TGGACAGAAGGCTAGGCTAA 57.752 50.000 20.55 0.00 0.00 3.09
337 338 2.042464 CATGGACAGAAGGCTAGGCTA 58.958 52.381 20.55 1.74 0.00 3.93
338 339 0.835941 CATGGACAGAAGGCTAGGCT 59.164 55.000 14.10 14.10 0.00 4.58
339 340 0.543749 ACATGGACAGAAGGCTAGGC 59.456 55.000 8.55 8.55 0.00 3.93
340 341 1.139853 GGACATGGACAGAAGGCTAGG 59.860 57.143 0.00 0.00 0.00 3.02
341 342 1.139853 GGGACATGGACAGAAGGCTAG 59.860 57.143 0.00 0.00 0.00 3.42
412 413 2.366916 ACCATTCCACCGCAAAATTTCA 59.633 40.909 0.00 0.00 0.00 2.69
417 418 5.923733 ATATAAACCATTCCACCGCAAAA 57.076 34.783 0.00 0.00 0.00 2.44
421 422 5.180680 GGAAGTATATAAACCATTCCACCGC 59.819 44.000 0.00 0.00 36.91 5.68
422 423 6.292923 TGGAAGTATATAAACCATTCCACCG 58.707 40.000 0.46 0.00 40.83 4.94
423 424 8.576442 CAATGGAAGTATATAAACCATTCCACC 58.424 37.037 18.35 0.00 46.42 4.61
426 427 8.706322 ACCAATGGAAGTATATAAACCATTCC 57.294 34.615 6.16 12.20 45.60 3.01
429 430 8.057246 AGGACCAATGGAAGTATATAAACCAT 57.943 34.615 6.16 9.43 42.17 3.55
430 431 7.460214 AGGACCAATGGAAGTATATAAACCA 57.540 36.000 6.16 0.00 35.09 3.67
431 432 9.449719 CATAGGACCAATGGAAGTATATAAACC 57.550 37.037 6.16 0.00 0.00 3.27
435 436 8.736097 ACACATAGGACCAATGGAAGTATATA 57.264 34.615 6.16 0.00 0.00 0.86
436 437 7.633018 ACACATAGGACCAATGGAAGTATAT 57.367 36.000 6.16 0.00 0.00 0.86
502 589 4.647291 ACAATTTTACAGCGAACGAGAG 57.353 40.909 0.00 0.00 0.00 3.20
507 594 6.983910 TGTTTTGAACAATTTTACAGCGAAC 58.016 32.000 0.00 0.00 38.72 3.95
566 654 3.270027 CACGCATAATGACCTTCCTTGA 58.730 45.455 0.00 0.00 0.00 3.02
603 1402 2.513897 GAATCCCCCGCCTTCACG 60.514 66.667 0.00 0.00 0.00 4.35
646 1445 2.295253 AAATGTAGAAGGCGACCTCG 57.705 50.000 0.00 0.00 43.27 4.63
662 1461 3.896854 GGAACGGAAGGCCCTAAAT 57.103 52.632 0.00 0.00 0.00 1.40
716 1547 8.570505 CACAAACGAGTATTTAGTACGTACTTC 58.429 37.037 31.58 20.32 38.38 3.01
729 1560 4.184629 GCCTCAGATCACAAACGAGTATT 58.815 43.478 0.00 0.00 0.00 1.89
730 1561 3.430929 GGCCTCAGATCACAAACGAGTAT 60.431 47.826 0.00 0.00 0.00 2.12
731 1562 2.094182 GGCCTCAGATCACAAACGAGTA 60.094 50.000 0.00 0.00 0.00 2.59
732 1563 1.338200 GGCCTCAGATCACAAACGAGT 60.338 52.381 0.00 0.00 0.00 4.18
733 1564 1.066573 AGGCCTCAGATCACAAACGAG 60.067 52.381 0.00 0.00 0.00 4.18
734 1565 0.976641 AGGCCTCAGATCACAAACGA 59.023 50.000 0.00 0.00 0.00 3.85
735 1566 1.081892 CAGGCCTCAGATCACAAACG 58.918 55.000 0.00 0.00 0.00 3.60
736 1567 2.079925 GTCAGGCCTCAGATCACAAAC 58.920 52.381 0.00 0.00 0.00 2.93
880 2004 1.883084 GGGCTCGCGTAATCAGTGG 60.883 63.158 5.77 0.00 0.00 4.00
908 2032 4.660938 GTGCTGGTGGGGTGGGTC 62.661 72.222 0.00 0.00 0.00 4.46
910 2034 4.666253 CTGTGCTGGTGGGGTGGG 62.666 72.222 0.00 0.00 0.00 4.61
961 2085 3.671437 TGTATTTATACGGCCGGAGGGG 61.671 54.545 31.76 0.00 41.79 4.79
1087 2217 1.572085 GACCTGAAGACGACGACGGA 61.572 60.000 12.58 0.00 44.46 4.69
1109 2239 0.825840 GGGGAGATGAGTCGGAGAGG 60.826 65.000 0.00 0.00 36.95 3.69
1110 2240 0.184933 AGGGGAGATGAGTCGGAGAG 59.815 60.000 0.00 0.00 36.95 3.20
1115 2245 1.604604 GAGAGAGGGGAGATGAGTCG 58.395 60.000 0.00 0.00 0.00 4.18
1116 2246 1.216678 TGGAGAGAGGGGAGATGAGTC 59.783 57.143 0.00 0.00 0.00 3.36
1117 2247 1.313889 TGGAGAGAGGGGAGATGAGT 58.686 55.000 0.00 0.00 0.00 3.41
1118 2248 2.110543 AGATGGAGAGAGGGGAGATGAG 59.889 54.545 0.00 0.00 0.00 2.90
1119 2249 2.109834 GAGATGGAGAGAGGGGAGATGA 59.890 54.545 0.00 0.00 0.00 2.92
1120 2250 2.158340 TGAGATGGAGAGAGGGGAGATG 60.158 54.545 0.00 0.00 0.00 2.90
1121 2251 2.151266 TGAGATGGAGAGAGGGGAGAT 58.849 52.381 0.00 0.00 0.00 2.75
1124 2254 0.263172 GGTGAGATGGAGAGAGGGGA 59.737 60.000 0.00 0.00 0.00 4.81
1135 2275 0.318529 CAGGAGCGATCGGTGAGATG 60.319 60.000 26.49 13.14 40.26 2.90
1136 2276 2.037053 CAGGAGCGATCGGTGAGAT 58.963 57.895 26.49 4.41 43.51 2.75
1218 2367 1.067565 TCTATTCCTGATCATCCGCGC 60.068 52.381 0.00 0.00 0.00 6.86
1219 2368 3.443037 GATCTATTCCTGATCATCCGCG 58.557 50.000 0.00 0.00 39.85 6.46
1221 2370 3.771479 TGGGATCTATTCCTGATCATCCG 59.229 47.826 0.00 0.00 44.75 4.18
1229 2384 5.221541 GGAACTAGTGTGGGATCTATTCCTG 60.222 48.000 0.00 0.00 44.75 3.86
1230 2385 4.902448 GGAACTAGTGTGGGATCTATTCCT 59.098 45.833 0.00 0.00 44.75 3.36
1231 2386 4.262079 CGGAACTAGTGTGGGATCTATTCC 60.262 50.000 0.00 0.00 44.62 3.01
1249 2404 2.872858 GACCAAGGATAAGATGCGGAAC 59.127 50.000 0.00 0.00 0.00 3.62
1267 2422 0.259065 GGGGATGGGGAAAGAAGACC 59.741 60.000 0.00 0.00 0.00 3.85
1279 2434 2.894731 TGCTCTACTCATAGGGGATGG 58.105 52.381 0.00 0.00 36.08 3.51
1281 2436 5.596361 CGAATATGCTCTACTCATAGGGGAT 59.404 44.000 0.00 0.00 42.31 3.85
1282 2437 4.950475 CGAATATGCTCTACTCATAGGGGA 59.050 45.833 0.00 0.00 33.10 4.81
1283 2438 4.707448 ACGAATATGCTCTACTCATAGGGG 59.293 45.833 0.00 0.00 30.84 4.79
1334 2489 3.518992 TCCTCCACCGGAAAAGAATTT 57.481 42.857 9.46 0.00 42.41 1.82
1343 2498 0.836400 AGCTTTCTTCCTCCACCGGA 60.836 55.000 9.46 0.00 0.00 5.14
1376 2531 9.110502 GGATTTGGGTACAGTTCTTCTAATTAG 57.889 37.037 6.11 6.11 0.00 1.73
1438 2603 4.473559 AGGTCCGAGGATCCTTAATTTCAA 59.526 41.667 17.42 0.00 0.00 2.69
1456 2621 1.467920 CAATCCCTTGCAAGAGGTCC 58.532 55.000 28.05 0.00 34.88 4.46
1457 2622 1.467920 CCAATCCCTTGCAAGAGGTC 58.532 55.000 28.05 0.00 34.88 3.85
1458 2623 0.040204 CCCAATCCCTTGCAAGAGGT 59.960 55.000 28.05 8.23 34.88 3.85
1459 2624 0.332632 TCCCAATCCCTTGCAAGAGG 59.667 55.000 28.05 24.24 36.52 3.69
1460 2625 1.467920 GTCCCAATCCCTTGCAAGAG 58.532 55.000 28.05 15.54 0.00 2.85
1461 2626 0.322456 CGTCCCAATCCCTTGCAAGA 60.322 55.000 28.05 9.59 0.00 3.02
1462 2627 0.609131 ACGTCCCAATCCCTTGCAAG 60.609 55.000 19.93 19.93 0.00 4.01
1477 2642 4.261530 GCTAGTAGATCCCCTAACAACGTC 60.262 50.000 0.00 0.00 0.00 4.34
1479 2644 3.890147 AGCTAGTAGATCCCCTAACAACG 59.110 47.826 0.00 0.00 0.00 4.10
1589 2894 7.728532 ACCACCAGACTTAATTTACTTTGGAAT 59.271 33.333 0.00 0.00 0.00 3.01
1608 2913 3.885724 AACTTGAACCAAAACCACCAG 57.114 42.857 0.00 0.00 0.00 4.00
1610 2915 6.110033 ACATAAAACTTGAACCAAAACCACC 58.890 36.000 0.00 0.00 0.00 4.61
1635 2940 4.765281 TGGACGAAATATTTAGAACGCG 57.235 40.909 14.33 3.53 0.00 6.01
1640 2945 9.715121 AAACAGTAGTTGGACGAAATATTTAGA 57.285 29.630 14.33 0.00 38.17 2.10
1651 2956 3.739300 CAGGTACAAACAGTAGTTGGACG 59.261 47.826 0.00 0.00 38.17 4.79
1758 3147 4.863548 AGCCCAAAGAATCAGATGAATCA 58.136 39.130 1.04 0.00 0.00 2.57
1813 3202 2.866156 CGTGAGCAACTTCTTCACTTGA 59.134 45.455 2.84 0.00 0.00 3.02
1829 3218 1.909141 CTTGCTCCAAGCTGCGTGAG 61.909 60.000 17.13 13.29 42.97 3.51
1840 3229 1.172180 CGGCCTTGAAACTTGCTCCA 61.172 55.000 0.00 0.00 0.00 3.86
1859 3248 5.992217 ACTTACTTTCAGTGTCCATCTCAAC 59.008 40.000 0.00 0.00 0.00 3.18
1865 3254 8.157476 ACAATTCTACTTACTTTCAGTGTCCAT 58.843 33.333 0.00 0.00 0.00 3.41
2016 3417 5.294799 ACACTATTTCAACGCAACAGTACAA 59.705 36.000 0.00 0.00 0.00 2.41
2026 3427 4.219033 CAACAAGGACACTATTTCAACGC 58.781 43.478 0.00 0.00 0.00 4.84
2041 3442 7.696992 TTAAGCTCTTATAAACCCAACAAGG 57.303 36.000 0.00 0.00 37.03 3.61
2046 3447 6.321181 CCTGCATTAAGCTCTTATAAACCCAA 59.679 38.462 0.00 0.00 45.94 4.12
2093 3494 2.685897 TCAACAAAACAGTACACAGGGC 59.314 45.455 0.00 0.00 0.00 5.19
2123 3524 4.095782 TGAAAGCTCATAAACCCAATACGC 59.904 41.667 0.00 0.00 0.00 4.42
2125 3526 8.345565 CAGTATGAAAGCTCATAAACCCAATAC 58.654 37.037 0.00 0.00 44.36 1.89
2137 3538 2.703416 CCACAGCAGTATGAAAGCTCA 58.297 47.619 0.00 0.00 39.69 4.26
2142 3543 1.614051 CCAGGCCACAGCAGTATGAAA 60.614 52.381 5.01 0.00 42.56 2.69
2186 3588 9.836864 AGCTTACTGAAATCTTTTCCAAAAATT 57.163 25.926 0.00 0.00 0.00 1.82
2191 3593 6.772716 AGTGAGCTTACTGAAATCTTTTCCAA 59.227 34.615 10.85 0.00 0.00 3.53
2197 3599 6.026947 ACGTAGTGAGCTTACTGAAATCTT 57.973 37.500 20.67 0.00 42.51 2.40
2199 3601 7.701078 TCATTACGTAGTGAGCTTACTGAAATC 59.299 37.037 20.67 5.70 45.73 2.17
2200 3602 7.544622 TCATTACGTAGTGAGCTTACTGAAAT 58.455 34.615 20.67 11.27 45.73 2.17
2201 3603 6.916440 TCATTACGTAGTGAGCTTACTGAAA 58.084 36.000 20.67 9.65 45.73 2.69
2202 3604 6.505044 TCATTACGTAGTGAGCTTACTGAA 57.495 37.500 20.67 9.80 45.73 3.02
2218 3632 7.698836 TTGATATCACACTCACATCATTACG 57.301 36.000 4.48 0.00 0.00 3.18
2252 3666 6.472016 TGTGTCTAACCAATCATCAAAGCTA 58.528 36.000 0.00 0.00 0.00 3.32
2275 3689 8.807667 ACAGAAAACTCAATTGCTTCTTAATG 57.192 30.769 0.00 0.00 0.00 1.90
2278 3692 9.730420 GTTAACAGAAAACTCAATTGCTTCTTA 57.270 29.630 0.00 0.00 0.00 2.10
2300 3714 5.010617 GGGACCTCAATTGCTTCTTTGTTAA 59.989 40.000 0.00 0.00 0.00 2.01
2301 3715 4.522789 GGGACCTCAATTGCTTCTTTGTTA 59.477 41.667 0.00 0.00 0.00 2.41
2323 3740 4.708421 AGTGATTCATTGTTGGATCCTTGG 59.292 41.667 14.23 0.00 37.08 3.61
2330 3747 6.356556 CCCTACATAGTGATTCATTGTTGGA 58.643 40.000 19.43 4.89 35.93 3.53
2336 3753 4.747931 GCTGCCCCTACATAGTGATTCATT 60.748 45.833 0.00 0.00 0.00 2.57
2351 3768 2.283460 GCCAAAAGAGCTGCCCCT 60.283 61.111 0.00 0.00 0.00 4.79
2352 3769 2.601367 TGCCAAAAGAGCTGCCCC 60.601 61.111 0.00 0.00 0.00 5.80
2353 3770 2.968206 CTGCCAAAAGAGCTGCCC 59.032 61.111 0.00 0.00 0.00 5.36
2354 3771 2.260743 GCTGCCAAAAGAGCTGCC 59.739 61.111 0.00 0.00 46.05 4.85
2356 3773 3.648339 TTTAAGCTGCCAAAAGAGCTG 57.352 42.857 0.00 0.00 44.97 4.24
2375 3792 6.552932 ACTAGGAAGAAGGTGGCTTATTTTT 58.447 36.000 0.00 0.00 0.00 1.94
2376 3793 6.140968 ACTAGGAAGAAGGTGGCTTATTTT 57.859 37.500 0.00 0.00 0.00 1.82
2377 3794 5.780958 ACTAGGAAGAAGGTGGCTTATTT 57.219 39.130 0.00 0.00 0.00 1.40
2378 3795 5.780958 AACTAGGAAGAAGGTGGCTTATT 57.219 39.130 0.00 0.00 0.00 1.40
2379 3796 5.780958 AAACTAGGAAGAAGGTGGCTTAT 57.219 39.130 0.00 0.00 0.00 1.73
2380 3797 5.578157 AAAACTAGGAAGAAGGTGGCTTA 57.422 39.130 0.00 0.00 0.00 3.09
2381 3798 4.455070 AAAACTAGGAAGAAGGTGGCTT 57.545 40.909 0.00 0.00 0.00 4.35
2382 3799 4.399219 GAAAAACTAGGAAGAAGGTGGCT 58.601 43.478 0.00 0.00 0.00 4.75
2383 3800 3.506455 GGAAAAACTAGGAAGAAGGTGGC 59.494 47.826 0.00 0.00 0.00 5.01
2384 3801 4.986783 AGGAAAAACTAGGAAGAAGGTGG 58.013 43.478 0.00 0.00 0.00 4.61
2385 3802 9.384764 CTTATAGGAAAAACTAGGAAGAAGGTG 57.615 37.037 0.00 0.00 0.00 4.00
2386 3803 8.047911 GCTTATAGGAAAAACTAGGAAGAAGGT 58.952 37.037 0.00 0.00 0.00 3.50
2387 3804 7.499563 GGCTTATAGGAAAAACTAGGAAGAAGG 59.500 40.741 0.00 0.00 0.00 3.46
2388 3805 8.268605 AGGCTTATAGGAAAAACTAGGAAGAAG 58.731 37.037 0.00 0.00 0.00 2.85
2389 3806 8.159229 AGGCTTATAGGAAAAACTAGGAAGAA 57.841 34.615 0.00 0.00 0.00 2.52
2390 3807 7.750947 AGGCTTATAGGAAAAACTAGGAAGA 57.249 36.000 0.00 0.00 0.00 2.87
2391 3808 8.268605 AGAAGGCTTATAGGAAAAACTAGGAAG 58.731 37.037 0.00 0.00 0.00 3.46
2392 3809 8.159229 AGAAGGCTTATAGGAAAAACTAGGAA 57.841 34.615 0.00 0.00 0.00 3.36
2393 3810 7.624077 AGAGAAGGCTTATAGGAAAAACTAGGA 59.376 37.037 0.00 0.00 0.00 2.94
2394 3811 7.797062 AGAGAAGGCTTATAGGAAAAACTAGG 58.203 38.462 0.00 0.00 0.00 3.02
2395 3812 8.700973 AGAGAGAAGGCTTATAGGAAAAACTAG 58.299 37.037 0.00 0.00 0.00 2.57
2396 3813 8.611051 AGAGAGAAGGCTTATAGGAAAAACTA 57.389 34.615 0.00 0.00 0.00 2.24
2397 3814 7.503492 AGAGAGAAGGCTTATAGGAAAAACT 57.497 36.000 0.00 0.00 0.00 2.66
2398 3815 9.839817 ATAAGAGAGAAGGCTTATAGGAAAAAC 57.160 33.333 0.00 0.00 35.99 2.43
2401 3818 9.213777 TGAATAAGAGAGAAGGCTTATAGGAAA 57.786 33.333 0.00 0.00 36.56 3.13
2402 3819 8.783660 TGAATAAGAGAGAAGGCTTATAGGAA 57.216 34.615 0.00 0.00 36.56 3.36
2403 3820 8.964533 ATGAATAAGAGAGAAGGCTTATAGGA 57.035 34.615 0.00 0.00 36.56 2.94
2404 3821 7.973388 CGATGAATAAGAGAGAAGGCTTATAGG 59.027 40.741 0.00 0.00 36.56 2.57
2405 3822 7.973388 CCGATGAATAAGAGAGAAGGCTTATAG 59.027 40.741 0.00 0.00 36.56 1.31
2406 3823 7.093727 CCCGATGAATAAGAGAGAAGGCTTATA 60.094 40.741 0.00 0.00 36.56 0.98
2407 3824 6.295575 CCCGATGAATAAGAGAGAAGGCTTAT 60.296 42.308 0.00 0.00 38.57 1.73
2408 3825 5.011125 CCCGATGAATAAGAGAGAAGGCTTA 59.989 44.000 0.00 0.00 0.00 3.09
2409 3826 4.202305 CCCGATGAATAAGAGAGAAGGCTT 60.202 45.833 0.00 0.00 0.00 4.35
2410 3827 3.323403 CCCGATGAATAAGAGAGAAGGCT 59.677 47.826 0.00 0.00 0.00 4.58
2411 3828 3.556004 CCCCGATGAATAAGAGAGAAGGC 60.556 52.174 0.00 0.00 0.00 4.35
2412 3829 3.556004 GCCCCGATGAATAAGAGAGAAGG 60.556 52.174 0.00 0.00 0.00 3.46
2413 3830 3.323403 AGCCCCGATGAATAAGAGAGAAG 59.677 47.826 0.00 0.00 0.00 2.85
2414 3831 3.309296 AGCCCCGATGAATAAGAGAGAA 58.691 45.455 0.00 0.00 0.00 2.87
2415 3832 2.964209 AGCCCCGATGAATAAGAGAGA 58.036 47.619 0.00 0.00 0.00 3.10
2416 3833 3.323403 AGAAGCCCCGATGAATAAGAGAG 59.677 47.826 0.00 0.00 0.00 3.20
2417 3834 3.309296 AGAAGCCCCGATGAATAAGAGA 58.691 45.455 0.00 0.00 0.00 3.10
2418 3835 3.760580 AGAAGCCCCGATGAATAAGAG 57.239 47.619 0.00 0.00 0.00 2.85
2419 3836 5.623956 TTTAGAAGCCCCGATGAATAAGA 57.376 39.130 0.00 0.00 0.00 2.10
2420 3837 6.884280 AATTTAGAAGCCCCGATGAATAAG 57.116 37.500 0.00 0.00 0.00 1.73
2421 3838 7.514721 ACTAATTTAGAAGCCCCGATGAATAA 58.485 34.615 10.39 0.00 0.00 1.40
2422 3839 7.074653 ACTAATTTAGAAGCCCCGATGAATA 57.925 36.000 10.39 0.00 0.00 1.75
2423 3840 5.941788 ACTAATTTAGAAGCCCCGATGAAT 58.058 37.500 10.39 0.00 0.00 2.57
2424 3841 5.367945 ACTAATTTAGAAGCCCCGATGAA 57.632 39.130 10.39 0.00 0.00 2.57
2425 3842 5.367945 AACTAATTTAGAAGCCCCGATGA 57.632 39.130 10.39 0.00 0.00 2.92
2426 3843 6.149474 CCATAACTAATTTAGAAGCCCCGATG 59.851 42.308 10.39 2.56 0.00 3.84
2427 3844 6.238648 CCATAACTAATTTAGAAGCCCCGAT 58.761 40.000 10.39 0.00 0.00 4.18
2428 3845 5.455612 CCCATAACTAATTTAGAAGCCCCGA 60.456 44.000 10.39 0.00 0.00 5.14
2429 3846 4.760204 CCCATAACTAATTTAGAAGCCCCG 59.240 45.833 10.39 0.00 0.00 5.73
2430 3847 5.948842 TCCCATAACTAATTTAGAAGCCCC 58.051 41.667 10.39 0.00 0.00 5.80
2431 3848 9.582648 TTTATCCCATAACTAATTTAGAAGCCC 57.417 33.333 10.39 0.00 0.00 5.19
2462 3879 9.677567 GCACATAAAATTTGTTGAGACTTCTAA 57.322 29.630 7.43 0.00 0.00 2.10
2463 3880 8.015087 CGCACATAAAATTTGTTGAGACTTCTA 58.985 33.333 7.43 0.00 0.00 2.10
2464 3881 6.857964 CGCACATAAAATTTGTTGAGACTTCT 59.142 34.615 7.43 0.00 0.00 2.85
2465 3882 6.088085 CCGCACATAAAATTTGTTGAGACTTC 59.912 38.462 7.43 0.00 0.00 3.01
2466 3883 5.920273 CCGCACATAAAATTTGTTGAGACTT 59.080 36.000 7.43 0.00 0.00 3.01
2467 3884 5.460646 CCGCACATAAAATTTGTTGAGACT 58.539 37.500 7.43 0.00 0.00 3.24
2468 3885 4.089923 GCCGCACATAAAATTTGTTGAGAC 59.910 41.667 7.43 0.00 0.00 3.36
2469 3886 4.022416 AGCCGCACATAAAATTTGTTGAGA 60.022 37.500 7.43 0.00 0.00 3.27
2470 3887 4.236935 AGCCGCACATAAAATTTGTTGAG 58.763 39.130 7.43 1.92 0.00 3.02
2471 3888 4.250116 AGCCGCACATAAAATTTGTTGA 57.750 36.364 7.43 0.00 0.00 3.18
2472 3889 4.988708 AAGCCGCACATAAAATTTGTTG 57.011 36.364 0.00 0.00 0.00 3.33
2473 3890 7.665561 AAATAAGCCGCACATAAAATTTGTT 57.334 28.000 0.00 0.00 0.00 2.83
2474 3891 7.665561 AAAATAAGCCGCACATAAAATTTGT 57.334 28.000 0.00 0.00 0.00 2.83
2478 3895 9.191995 GCTTATAAAATAAGCCGCACATAAAAT 57.808 29.630 17.12 0.00 42.88 1.82
2479 3896 8.568732 GCTTATAAAATAAGCCGCACATAAAA 57.431 30.769 17.12 0.00 42.88 1.52
2491 3908 5.707764 GCCTCTCCCCAGCTTATAAAATAAG 59.292 44.000 2.88 2.88 0.00 1.73
2492 3909 5.133660 TGCCTCTCCCCAGCTTATAAAATAA 59.866 40.000 0.00 0.00 0.00 1.40
2493 3910 4.663120 TGCCTCTCCCCAGCTTATAAAATA 59.337 41.667 0.00 0.00 0.00 1.40
2494 3911 3.463329 TGCCTCTCCCCAGCTTATAAAAT 59.537 43.478 0.00 0.00 0.00 1.82
2495 3912 2.849943 TGCCTCTCCCCAGCTTATAAAA 59.150 45.455 0.00 0.00 0.00 1.52
2496 3913 2.439507 CTGCCTCTCCCCAGCTTATAAA 59.560 50.000 0.00 0.00 0.00 1.40
2497 3914 2.050144 CTGCCTCTCCCCAGCTTATAA 58.950 52.381 0.00 0.00 0.00 0.98
2498 3915 1.722034 CTGCCTCTCCCCAGCTTATA 58.278 55.000 0.00 0.00 0.00 0.98
2499 3916 2.537600 CTGCCTCTCCCCAGCTTAT 58.462 57.895 0.00 0.00 0.00 1.73
2500 3917 4.056805 CTGCCTCTCCCCAGCTTA 57.943 61.111 0.00 0.00 0.00 3.09
2504 3921 0.842635 AATAAGCTGCCTCTCCCCAG 59.157 55.000 0.00 0.00 0.00 4.45
2505 3922 1.298953 AAATAAGCTGCCTCTCCCCA 58.701 50.000 0.00 0.00 0.00 4.96
2506 3923 2.443958 AAAATAAGCTGCCTCTCCCC 57.556 50.000 0.00 0.00 0.00 4.81
2523 3940 5.777850 AGTTCTTTTAGGCGGCTTAAAAA 57.222 34.783 24.17 17.45 31.67 1.94
2524 3941 6.148315 GTCTAGTTCTTTTAGGCGGCTTAAAA 59.852 38.462 23.13 23.13 0.00 1.52
2525 3942 5.640783 GTCTAGTTCTTTTAGGCGGCTTAAA 59.359 40.000 19.76 19.91 0.00 1.52
2526 3943 5.173664 GTCTAGTTCTTTTAGGCGGCTTAA 58.826 41.667 19.76 12.46 0.00 1.85
2527 3944 4.382362 GGTCTAGTTCTTTTAGGCGGCTTA 60.382 45.833 19.76 4.73 0.00 3.09
2528 3945 3.597255 GTCTAGTTCTTTTAGGCGGCTT 58.403 45.455 19.76 0.75 0.00 4.35
2529 3946 2.093606 GGTCTAGTTCTTTTAGGCGGCT 60.094 50.000 18.33 18.33 0.00 5.52
2530 3947 2.277969 GGTCTAGTTCTTTTAGGCGGC 58.722 52.381 0.00 0.00 0.00 6.53
2531 3948 2.094338 ACGGTCTAGTTCTTTTAGGCGG 60.094 50.000 0.00 0.00 0.00 6.13
2532 3949 3.227810 ACGGTCTAGTTCTTTTAGGCG 57.772 47.619 0.00 0.00 0.00 5.52
2533 3950 6.335777 TCATTACGGTCTAGTTCTTTTAGGC 58.664 40.000 0.00 0.00 0.00 3.93
2534 3951 8.767478 TTTCATTACGGTCTAGTTCTTTTAGG 57.233 34.615 0.00 0.00 0.00 2.69
2535 3952 9.420551 ACTTTCATTACGGTCTAGTTCTTTTAG 57.579 33.333 0.00 0.00 0.00 1.85
2536 3953 9.199982 CACTTTCATTACGGTCTAGTTCTTTTA 57.800 33.333 0.00 0.00 0.00 1.52
2537 3954 7.929785 TCACTTTCATTACGGTCTAGTTCTTTT 59.070 33.333 0.00 0.00 0.00 2.27
2538 3955 7.439381 TCACTTTCATTACGGTCTAGTTCTTT 58.561 34.615 0.00 0.00 0.00 2.52
2539 3956 6.989659 TCACTTTCATTACGGTCTAGTTCTT 58.010 36.000 0.00 0.00 0.00 2.52
2540 3957 6.585695 TCACTTTCATTACGGTCTAGTTCT 57.414 37.500 0.00 0.00 0.00 3.01
2541 3958 9.182933 GATATCACTTTCATTACGGTCTAGTTC 57.817 37.037 0.00 0.00 0.00 3.01
2542 3959 8.692710 TGATATCACTTTCATTACGGTCTAGTT 58.307 33.333 0.00 0.00 0.00 2.24
2543 3960 8.234136 TGATATCACTTTCATTACGGTCTAGT 57.766 34.615 0.00 0.00 0.00 2.57
2544 3961 9.347934 GATGATATCACTTTCATTACGGTCTAG 57.652 37.037 7.78 0.00 32.84 2.43
2545 3962 8.856103 TGATGATATCACTTTCATTACGGTCTA 58.144 33.333 7.78 0.00 32.84 2.59
2546 3963 7.726216 TGATGATATCACTTTCATTACGGTCT 58.274 34.615 7.78 0.00 32.84 3.85
2547 3964 7.867909 TCTGATGATATCACTTTCATTACGGTC 59.132 37.037 7.78 0.00 35.06 4.79
2548 3965 7.726216 TCTGATGATATCACTTTCATTACGGT 58.274 34.615 7.78 0.00 35.06 4.83
2549 3966 8.491152 GTTCTGATGATATCACTTTCATTACGG 58.509 37.037 7.78 0.00 35.06 4.02
2550 3967 8.491152 GGTTCTGATGATATCACTTTCATTACG 58.509 37.037 7.78 0.00 35.06 3.18
2551 3968 9.553064 AGGTTCTGATGATATCACTTTCATTAC 57.447 33.333 7.78 8.67 35.06 1.89
2552 3969 9.770097 GAGGTTCTGATGATATCACTTTCATTA 57.230 33.333 7.78 0.00 35.06 1.90
2556 3973 7.495901 TCTGAGGTTCTGATGATATCACTTTC 58.504 38.462 7.78 2.58 35.06 2.62
2557 3974 7.125507 ACTCTGAGGTTCTGATGATATCACTTT 59.874 37.037 7.78 0.00 35.06 2.66
2563 3980 9.295825 CTAACTACTCTGAGGTTCTGATGATAT 57.704 37.037 9.85 0.00 0.00 1.63
2626 4043 4.695455 TGGGAGCAGAATCTAAAAGAAACG 59.305 41.667 0.00 0.00 0.00 3.60
2635 4052 2.145397 ACGACTGGGAGCAGAATCTA 57.855 50.000 0.00 0.00 0.00 1.98
2636 4053 1.751924 GTACGACTGGGAGCAGAATCT 59.248 52.381 0.00 0.00 0.00 2.40
2637 4054 1.751924 AGTACGACTGGGAGCAGAATC 59.248 52.381 0.00 0.00 0.00 2.52
2638 4055 1.853963 AGTACGACTGGGAGCAGAAT 58.146 50.000 0.00 0.00 0.00 2.40
2639 4056 2.089980 GTAGTACGACTGGGAGCAGAA 58.910 52.381 0.00 0.00 0.00 3.02
2680 4123 9.282247 CTTAGAACATGCTTGATTGTTTATCAC 57.718 33.333 6.60 0.00 42.88 3.06
2755 4199 5.953571 AGTTGAATAAGGTTTCTCCCAAGT 58.046 37.500 0.00 0.00 36.75 3.16
2946 4391 5.123820 TGCTGCTTGTTCATAGAACCATAAC 59.876 40.000 0.00 0.00 0.00 1.89
3029 4474 2.163010 GCCACAGAAGACATTGACATGG 59.837 50.000 0.00 0.00 34.27 3.66
3153 4598 3.690422 GATCACAACAACTCGCAAACAA 58.310 40.909 0.00 0.00 0.00 2.83
3168 4613 4.251543 ACACACTAACATGTCGATCACA 57.748 40.909 0.00 0.00 40.18 3.58
3204 4649 3.433957 CGTTATTTCATGACACGGGAACA 59.566 43.478 0.00 0.00 0.00 3.18
3236 4681 0.249447 GCCCTGAACTTGCCAAACAC 60.249 55.000 0.00 0.00 0.00 3.32
3270 4715 0.735978 TAACAGTCGCTGCGGACATG 60.736 55.000 23.03 16.74 39.42 3.21
3273 4718 1.060698 GATTTAACAGTCGCTGCGGAC 59.939 52.381 23.03 17.72 34.37 4.79
3329 4774 4.940483 TGGGGTTTGATGATATCACCAAA 58.060 39.130 19.48 19.48 37.04 3.28
3424 4872 7.014134 TGTCATGAAACTGAATTCTGCCTTAAA 59.986 33.333 11.86 0.47 0.00 1.52
3446 4894 3.708403 ATTGGTCTGCAGATTCTGTCA 57.292 42.857 21.47 11.79 33.43 3.58
3447 4895 5.382618 AAAATTGGTCTGCAGATTCTGTC 57.617 39.130 21.47 5.37 33.43 3.51
3448 4896 5.537674 AGAAAAATTGGTCTGCAGATTCTGT 59.462 36.000 21.47 2.91 33.43 3.41
3462 4924 1.170442 ACCGGCGGTAGAAAAATTGG 58.830 50.000 33.31 0.00 32.11 3.16
3482 4961 1.761784 TGTGCCTGAAAATGCTTGGTT 59.238 42.857 0.00 0.00 0.00 3.67
3499 4978 1.229428 CTGGTGGTGTACAAGCTGTG 58.771 55.000 0.00 0.00 0.00 3.66
3634 5113 1.172180 TTGTACCGGGAAGACGACGT 61.172 55.000 6.32 0.00 35.47 4.34
3790 5269 3.487202 GTTCTTCGCCGCGCATCA 61.487 61.111 8.75 0.00 0.00 3.07
3796 5275 3.479269 CGAGTGGTTCTTCGCCGC 61.479 66.667 0.00 0.00 36.81 6.53
3880 5359 2.100631 GCTGCAGATTGTACGCCGT 61.101 57.895 20.43 0.00 0.00 5.68
3881 5360 2.703409 GCTGCAGATTGTACGCCG 59.297 61.111 20.43 0.00 0.00 6.46
3909 5388 2.883828 CGACAGCCTCAACCTGGGT 61.884 63.158 0.00 0.00 34.65 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.