Multiple sequence alignment - TraesCS2A01G362500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G362500 chr2A 100.000 3476 0 0 1 3476 606815667 606812192 0.000000e+00 6420
1 TraesCS2A01G362500 chr2A 91.451 1158 67 10 1469 2606 606712135 606710990 0.000000e+00 1561
2 TraesCS2A01G362500 chr2A 90.119 759 37 10 727 1458 606712957 606712210 0.000000e+00 952
3 TraesCS2A01G362500 chr2B 89.419 1909 136 40 753 2627 543852083 543850207 0.000000e+00 2346
4 TraesCS2A01G362500 chr2B 91.201 1648 103 20 739 2353 544711512 544709874 0.000000e+00 2202
5 TraesCS2A01G362500 chr2B 90.262 1715 110 34 753 2439 544282208 544280523 0.000000e+00 2189
6 TraesCS2A01G362500 chr2B 94.649 542 29 0 2884 3425 564985419 564984878 0.000000e+00 841
7 TraesCS2A01G362500 chr2B 94.403 536 30 0 2890 3425 683728688 683728153 0.000000e+00 824
8 TraesCS2A01G362500 chr2D 91.706 1061 58 9 1469 2507 461802531 461801479 0.000000e+00 1445
9 TraesCS2A01G362500 chr2D 91.413 722 43 9 739 1460 461803273 461802571 0.000000e+00 972
10 TraesCS2A01G362500 chr2D 88.402 707 52 20 753 1451 461674190 461673506 0.000000e+00 824
11 TraesCS2A01G362500 chr2D 92.520 508 34 3 1543 2048 461673445 461672940 0.000000e+00 725
12 TraesCS2A01G362500 chr2D 87.980 599 52 4 2043 2623 461660005 461659409 0.000000e+00 689
13 TraesCS2A01G362500 chr2D 84.683 568 73 9 130 686 576275738 576275174 3.920000e-154 555
14 TraesCS2A01G362500 chr2D 83.391 578 81 10 130 693 455935320 455935896 3.980000e-144 521
15 TraesCS2A01G362500 chr2D 93.284 134 9 0 2 135 512281435 512281302 7.610000e-47 198
16 TraesCS2A01G362500 chr2D 91.045 134 12 0 2 135 455934677 455934810 7.660000e-42 182
17 TraesCS2A01G362500 chr4D 95.890 584 22 2 2894 3476 252179596 252179014 0.000000e+00 944
18 TraesCS2A01G362500 chr4D 95.009 581 28 1 2896 3476 15090382 15089803 0.000000e+00 911
19 TraesCS2A01G362500 chr7D 95.712 583 24 1 2894 3476 488079560 488080141 0.000000e+00 937
20 TraesCS2A01G362500 chr7D 93.182 132 9 0 4 135 481619162 481619293 9.840000e-46 195
21 TraesCS2A01G362500 chr7D 91.791 134 11 0 2 135 603159815 603159682 1.650000e-43 187
22 TraesCS2A01G362500 chr7A 93.597 531 34 0 2895 3425 577490461 577489931 0.000000e+00 793
23 TraesCS2A01G362500 chr7A 93.295 522 33 2 2880 3400 5723161 5723681 0.000000e+00 769
24 TraesCS2A01G362500 chr3B 94.466 506 25 2 2878 3382 809089074 809089577 0.000000e+00 776
25 TraesCS2A01G362500 chrUn 94.071 506 27 2 2878 3382 470557952 470558455 0.000000e+00 765
26 TraesCS2A01G362500 chr3A 85.211 568 70 11 135 694 659826932 659826371 3.890000e-159 571
27 TraesCS2A01G362500 chr4B 86.745 513 61 4 948 1458 661122124 661121617 6.510000e-157 564
28 TraesCS2A01G362500 chr4B 83.245 567 81 9 131 694 89053981 89054536 3.100000e-140 508
29 TraesCS2A01G362500 chr4B 84.007 544 72 11 130 663 624463884 624464422 3.100000e-140 508
30 TraesCS2A01G362500 chr4B 91.791 134 11 0 2 135 624463230 624463363 1.650000e-43 187
31 TraesCS2A01G362500 chr3D 84.507 568 77 6 130 686 8938954 8939521 5.070000e-153 551
32 TraesCS2A01G362500 chr3D 94.262 122 7 0 10 131 8938330 8938451 1.650000e-43 187
33 TraesCS2A01G362500 chr5B 83.187 571 85 9 130 692 625040299 625039732 2.390000e-141 512
34 TraesCS2A01G362500 chr5B 83.156 564 84 9 135 690 628611366 628610806 4.000000e-139 505
35 TraesCS2A01G362500 chr5B 87.016 439 56 1 130 568 658913567 658914004 8.670000e-136 494
36 TraesCS2A01G362500 chr5B 90.580 138 12 1 2 138 625040950 625040813 7.660000e-42 182
37 TraesCS2A01G362500 chr5A 93.985 133 8 0 3344 3476 60755115 60754983 5.880000e-48 202
38 TraesCS2A01G362500 chr1D 91.791 134 11 0 2 135 79830235 79830368 1.650000e-43 187
39 TraesCS2A01G362500 chr1D 91.045 134 12 0 2 135 32715029 32714896 7.660000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G362500 chr2A 606812192 606815667 3475 True 6420.0 6420 100.0000 1 3476 1 chr2A.!!$R1 3475
1 TraesCS2A01G362500 chr2A 606710990 606712957 1967 True 1256.5 1561 90.7850 727 2606 2 chr2A.!!$R2 1879
2 TraesCS2A01G362500 chr2B 543850207 543852083 1876 True 2346.0 2346 89.4190 753 2627 1 chr2B.!!$R1 1874
3 TraesCS2A01G362500 chr2B 544709874 544711512 1638 True 2202.0 2202 91.2010 739 2353 1 chr2B.!!$R3 1614
4 TraesCS2A01G362500 chr2B 544280523 544282208 1685 True 2189.0 2189 90.2620 753 2439 1 chr2B.!!$R2 1686
5 TraesCS2A01G362500 chr2B 564984878 564985419 541 True 841.0 841 94.6490 2884 3425 1 chr2B.!!$R4 541
6 TraesCS2A01G362500 chr2B 683728153 683728688 535 True 824.0 824 94.4030 2890 3425 1 chr2B.!!$R5 535
7 TraesCS2A01G362500 chr2D 461801479 461803273 1794 True 1208.5 1445 91.5595 739 2507 2 chr2D.!!$R5 1768
8 TraesCS2A01G362500 chr2D 461672940 461674190 1250 True 774.5 824 90.4610 753 2048 2 chr2D.!!$R4 1295
9 TraesCS2A01G362500 chr2D 461659409 461660005 596 True 689.0 689 87.9800 2043 2623 1 chr2D.!!$R1 580
10 TraesCS2A01G362500 chr2D 576275174 576275738 564 True 555.0 555 84.6830 130 686 1 chr2D.!!$R3 556
11 TraesCS2A01G362500 chr2D 455934677 455935896 1219 False 351.5 521 87.2180 2 693 2 chr2D.!!$F1 691
12 TraesCS2A01G362500 chr4D 252179014 252179596 582 True 944.0 944 95.8900 2894 3476 1 chr4D.!!$R2 582
13 TraesCS2A01G362500 chr4D 15089803 15090382 579 True 911.0 911 95.0090 2896 3476 1 chr4D.!!$R1 580
14 TraesCS2A01G362500 chr7D 488079560 488080141 581 False 937.0 937 95.7120 2894 3476 1 chr7D.!!$F2 582
15 TraesCS2A01G362500 chr7A 577489931 577490461 530 True 793.0 793 93.5970 2895 3425 1 chr7A.!!$R1 530
16 TraesCS2A01G362500 chr7A 5723161 5723681 520 False 769.0 769 93.2950 2880 3400 1 chr7A.!!$F1 520
17 TraesCS2A01G362500 chr3B 809089074 809089577 503 False 776.0 776 94.4660 2878 3382 1 chr3B.!!$F1 504
18 TraesCS2A01G362500 chrUn 470557952 470558455 503 False 765.0 765 94.0710 2878 3382 1 chrUn.!!$F1 504
19 TraesCS2A01G362500 chr3A 659826371 659826932 561 True 571.0 571 85.2110 135 694 1 chr3A.!!$R1 559
20 TraesCS2A01G362500 chr4B 661121617 661122124 507 True 564.0 564 86.7450 948 1458 1 chr4B.!!$R1 510
21 TraesCS2A01G362500 chr4B 89053981 89054536 555 False 508.0 508 83.2450 131 694 1 chr4B.!!$F1 563
22 TraesCS2A01G362500 chr4B 624463230 624464422 1192 False 347.5 508 87.8990 2 663 2 chr4B.!!$F2 661
23 TraesCS2A01G362500 chr3D 8938330 8939521 1191 False 369.0 551 89.3845 10 686 2 chr3D.!!$F1 676
24 TraesCS2A01G362500 chr5B 628610806 628611366 560 True 505.0 505 83.1560 135 690 1 chr5B.!!$R1 555
25 TraesCS2A01G362500 chr5B 625039732 625040950 1218 True 347.0 512 86.8835 2 692 2 chr5B.!!$R2 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 1093 0.032952 AGATGGTGTGCGTTACGTGT 59.967 50.0 6.63 0.0 0.00 4.49 F
679 1195 0.034186 TCGATGCATTGGGCCTCTTT 60.034 50.0 14.12 0.0 43.89 2.52 F
680 1196 0.819582 CGATGCATTGGGCCTCTTTT 59.180 50.0 4.53 0.0 43.89 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 2364 0.460109 TCGTCACCTTCATGCCATCG 60.460 55.000 0.0 0.0 0.00 3.84 R
2325 3557 0.888736 CAGGAATGTGGAACGTGGCA 60.889 55.000 0.0 0.0 42.39 4.92 R
2638 3893 1.347707 TGCCTGAAGGTAGTGTTCCTG 59.652 52.381 0.0 0.0 37.57 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 2.092882 GCGCCACTGTTCGAGGTAC 61.093 63.158 0.00 0.00 0.00 3.34
133 649 2.933287 ACATCGCCCCCAACCAGA 60.933 61.111 0.00 0.00 0.00 3.86
147 663 2.632544 CCAGACGTGCGACAGGGTA 61.633 63.158 0.00 0.00 0.00 3.69
217 733 4.012895 GCACTGGCACGTTGACGG 62.013 66.667 8.52 0.00 44.95 4.79
291 807 0.917333 AAGGAATGGCGGGGGACTTA 60.917 55.000 0.00 0.00 0.00 2.24
307 823 1.598701 CTTACCCTTGGCCTTGCTGC 61.599 60.000 3.32 0.00 0.00 5.25
337 853 0.399233 GGAGTAGAGGCCCATCTGGT 60.399 60.000 0.00 0.00 36.04 4.00
340 856 2.239907 GAGTAGAGGCCCATCTGGTTTT 59.760 50.000 0.00 0.00 36.04 2.43
341 857 3.454812 GAGTAGAGGCCCATCTGGTTTTA 59.545 47.826 0.00 0.00 36.04 1.52
342 858 4.047883 AGTAGAGGCCCATCTGGTTTTAT 58.952 43.478 0.00 0.00 36.04 1.40
344 860 3.635591 AGAGGCCCATCTGGTTTTATTG 58.364 45.455 0.00 0.00 36.04 1.90
369 885 3.599285 CTAGGGTTTGCCGGCGACA 62.599 63.158 27.40 13.29 34.97 4.35
370 886 3.599285 TAGGGTTTGCCGGCGACAG 62.599 63.158 27.40 0.00 34.97 3.51
392 908 1.202510 GGAGCAGAGTGTGGCTAGATG 60.203 57.143 0.00 0.00 41.22 2.90
411 927 3.743017 GGATGGGGGCTGGCTGAA 61.743 66.667 0.00 0.00 0.00 3.02
412 928 2.360191 GATGGGGGCTGGCTGAAA 59.640 61.111 0.00 0.00 0.00 2.69
413 929 1.305213 GATGGGGGCTGGCTGAAAA 60.305 57.895 0.00 0.00 0.00 2.29
414 930 1.607801 GATGGGGGCTGGCTGAAAAC 61.608 60.000 0.00 0.00 0.00 2.43
415 931 3.373565 GGGGGCTGGCTGAAAACG 61.374 66.667 0.00 0.00 0.00 3.60
416 932 2.282180 GGGGCTGGCTGAAAACGA 60.282 61.111 0.00 0.00 0.00 3.85
417 933 1.901464 GGGGCTGGCTGAAAACGAA 60.901 57.895 0.00 0.00 0.00 3.85
418 934 1.285950 GGGCTGGCTGAAAACGAAC 59.714 57.895 0.00 0.00 0.00 3.95
419 935 1.082104 GGCTGGCTGAAAACGAACG 60.082 57.895 0.00 0.00 0.00 3.95
420 936 1.503818 GGCTGGCTGAAAACGAACGA 61.504 55.000 0.14 0.00 0.00 3.85
421 937 0.110644 GCTGGCTGAAAACGAACGAG 60.111 55.000 0.14 0.00 0.00 4.18
422 938 0.512952 CTGGCTGAAAACGAACGAGG 59.487 55.000 0.14 0.00 0.00 4.63
423 939 0.105224 TGGCTGAAAACGAACGAGGA 59.895 50.000 0.14 0.00 0.00 3.71
424 940 0.511653 GGCTGAAAACGAACGAGGAC 59.488 55.000 0.14 0.00 0.00 3.85
425 941 0.161024 GCTGAAAACGAACGAGGACG 59.839 55.000 0.14 0.00 45.75 4.79
426 942 0.782384 CTGAAAACGAACGAGGACGG 59.218 55.000 0.14 0.00 44.46 4.79
427 943 0.102844 TGAAAACGAACGAGGACGGT 59.897 50.000 0.14 0.00 44.28 4.83
433 949 3.308705 AACGAGGACGGTCCCACC 61.309 66.667 23.21 11.90 44.46 4.61
449 965 2.739287 CCGCACGGTCGGCTTAAA 60.739 61.111 0.00 0.00 43.18 1.52
450 966 2.319096 CCGCACGGTCGGCTTAAAA 61.319 57.895 0.00 0.00 43.18 1.52
451 967 1.570475 CGCACGGTCGGCTTAAAAA 59.430 52.632 0.00 0.00 0.00 1.94
485 1001 3.108289 CTGACGCGTGTGCCTGAG 61.108 66.667 20.70 0.00 38.08 3.35
486 1002 4.662961 TGACGCGTGTGCCTGAGG 62.663 66.667 20.70 0.00 38.08 3.86
487 1003 4.664677 GACGCGTGTGCCTGAGGT 62.665 66.667 20.70 0.00 38.08 3.85
488 1004 4.664677 ACGCGTGTGCCTGAGGTC 62.665 66.667 12.93 0.00 38.08 3.85
489 1005 4.662961 CGCGTGTGCCTGAGGTCA 62.663 66.667 0.00 0.00 38.08 4.02
490 1006 2.046892 GCGTGTGCCTGAGGTCAT 60.047 61.111 0.00 0.00 33.98 3.06
491 1007 1.218047 GCGTGTGCCTGAGGTCATA 59.782 57.895 0.00 0.00 33.98 2.15
492 1008 0.391130 GCGTGTGCCTGAGGTCATAA 60.391 55.000 0.00 0.00 33.98 1.90
493 1009 1.943968 GCGTGTGCCTGAGGTCATAAA 60.944 52.381 0.00 0.00 33.98 1.40
494 1010 2.632377 CGTGTGCCTGAGGTCATAAAT 58.368 47.619 0.00 0.00 0.00 1.40
495 1011 3.009723 CGTGTGCCTGAGGTCATAAATT 58.990 45.455 0.00 0.00 0.00 1.82
496 1012 4.188462 CGTGTGCCTGAGGTCATAAATTA 58.812 43.478 0.00 0.00 0.00 1.40
497 1013 4.634004 CGTGTGCCTGAGGTCATAAATTAA 59.366 41.667 0.00 0.00 0.00 1.40
498 1014 5.220662 CGTGTGCCTGAGGTCATAAATTAAG 60.221 44.000 0.00 0.00 0.00 1.85
499 1015 4.640201 TGTGCCTGAGGTCATAAATTAAGC 59.360 41.667 0.00 0.00 0.00 3.09
500 1016 4.884164 GTGCCTGAGGTCATAAATTAAGCT 59.116 41.667 0.00 0.00 0.00 3.74
501 1017 4.883585 TGCCTGAGGTCATAAATTAAGCTG 59.116 41.667 0.00 0.00 0.00 4.24
502 1018 5.126067 GCCTGAGGTCATAAATTAAGCTGA 58.874 41.667 0.00 0.00 0.00 4.26
503 1019 5.008118 GCCTGAGGTCATAAATTAAGCTGAC 59.992 44.000 0.00 0.00 37.79 3.51
504 1020 6.352516 CCTGAGGTCATAAATTAAGCTGACT 58.647 40.000 5.54 0.00 38.41 3.41
505 1021 7.500992 CCTGAGGTCATAAATTAAGCTGACTA 58.499 38.462 5.54 0.00 38.41 2.59
506 1022 7.655328 CCTGAGGTCATAAATTAAGCTGACTAG 59.345 40.741 5.54 0.00 38.41 2.57
507 1023 7.500992 TGAGGTCATAAATTAAGCTGACTAGG 58.499 38.462 5.54 0.00 38.41 3.02
508 1024 7.125811 TGAGGTCATAAATTAAGCTGACTAGGT 59.874 37.037 5.54 0.00 38.41 3.08
509 1025 8.548880 AGGTCATAAATTAAGCTGACTAGGTA 57.451 34.615 5.54 0.00 38.41 3.08
510 1026 8.643324 AGGTCATAAATTAAGCTGACTAGGTAG 58.357 37.037 5.54 0.00 38.41 3.18
511 1027 7.873505 GGTCATAAATTAAGCTGACTAGGTAGG 59.126 40.741 5.54 0.00 38.41 3.18
512 1028 7.385478 GTCATAAATTAAGCTGACTAGGTAGGC 59.615 40.741 0.00 0.00 36.07 3.93
513 1029 5.959583 AAATTAAGCTGACTAGGTAGGCT 57.040 39.130 0.00 0.00 33.49 4.58
514 1030 8.585881 CATAAATTAAGCTGACTAGGTAGGCTA 58.414 37.037 0.00 0.00 33.49 3.93
515 1031 7.619512 AAATTAAGCTGACTAGGTAGGCTAT 57.380 36.000 0.00 0.00 33.49 2.97
516 1032 6.597832 ATTAAGCTGACTAGGTAGGCTATG 57.402 41.667 0.00 0.00 33.49 2.23
517 1033 2.883026 AGCTGACTAGGTAGGCTATGG 58.117 52.381 0.00 0.00 31.69 2.74
518 1034 1.896465 GCTGACTAGGTAGGCTATGGG 59.104 57.143 0.00 0.00 30.79 4.00
519 1035 1.896465 CTGACTAGGTAGGCTATGGGC 59.104 57.143 0.00 0.00 40.90 5.36
520 1036 1.219469 TGACTAGGTAGGCTATGGGCA 59.781 52.381 5.19 0.00 44.01 5.36
521 1037 1.896465 GACTAGGTAGGCTATGGGCAG 59.104 57.143 5.19 0.00 44.01 4.85
522 1038 1.220750 ACTAGGTAGGCTATGGGCAGT 59.779 52.381 5.19 0.00 44.01 4.40
523 1039 2.330216 CTAGGTAGGCTATGGGCAGTT 58.670 52.381 5.19 0.00 44.01 3.16
524 1040 0.839946 AGGTAGGCTATGGGCAGTTG 59.160 55.000 5.19 0.00 44.01 3.16
525 1041 0.179018 GGTAGGCTATGGGCAGTTGG 60.179 60.000 5.19 0.00 44.01 3.77
526 1042 0.837272 GTAGGCTATGGGCAGTTGGA 59.163 55.000 5.19 0.00 44.01 3.53
527 1043 0.837272 TAGGCTATGGGCAGTTGGAC 59.163 55.000 5.19 0.00 44.01 4.02
528 1044 1.819632 GGCTATGGGCAGTTGGACG 60.820 63.158 0.00 0.00 44.01 4.79
529 1045 1.220749 GCTATGGGCAGTTGGACGA 59.779 57.895 0.00 0.00 41.35 4.20
530 1046 1.090052 GCTATGGGCAGTTGGACGAC 61.090 60.000 0.00 0.00 41.35 4.34
531 1047 0.462047 CTATGGGCAGTTGGACGACC 60.462 60.000 0.00 0.00 0.00 4.79
532 1048 2.233605 TATGGGCAGTTGGACGACCG 62.234 60.000 0.00 0.00 39.42 4.79
533 1049 4.309950 GGGCAGTTGGACGACCGT 62.310 66.667 0.00 0.00 39.42 4.83
534 1050 2.737376 GGCAGTTGGACGACCGTC 60.737 66.667 13.56 13.56 43.87 4.79
535 1051 2.028484 GCAGTTGGACGACCGTCA 59.972 61.111 21.79 7.54 46.20 4.35
536 1052 2.022129 GCAGTTGGACGACCGTCAG 61.022 63.158 21.79 8.70 46.20 3.51
537 1053 1.372997 CAGTTGGACGACCGTCAGG 60.373 63.158 21.79 4.78 46.20 3.86
549 1065 3.112709 GTCAGGTGAAGACGCGGC 61.113 66.667 12.47 7.86 0.00 6.53
550 1066 4.717629 TCAGGTGAAGACGCGGCG 62.718 66.667 22.36 22.36 0.00 6.46
551 1067 4.717629 CAGGTGAAGACGCGGCGA 62.718 66.667 30.94 2.30 0.00 5.54
552 1068 3.986006 AGGTGAAGACGCGGCGAA 61.986 61.111 30.94 5.89 0.00 4.70
553 1069 3.774702 GGTGAAGACGCGGCGAAC 61.775 66.667 30.94 20.93 0.00 3.95
554 1070 3.033764 GTGAAGACGCGGCGAACA 61.034 61.111 30.94 18.33 0.00 3.18
555 1071 2.279584 TGAAGACGCGGCGAACAA 60.280 55.556 30.94 7.40 0.00 2.83
556 1072 2.170273 GAAGACGCGGCGAACAAC 59.830 61.111 30.94 13.65 0.00 3.32
557 1073 3.609422 GAAGACGCGGCGAACAACG 62.609 63.158 30.94 6.71 45.66 4.10
558 1074 4.634133 AGACGCGGCGAACAACGA 62.634 61.111 30.94 0.00 45.77 3.85
559 1075 4.117372 GACGCGGCGAACAACGAG 62.117 66.667 30.94 0.00 45.77 4.18
560 1076 4.634133 ACGCGGCGAACAACGAGA 62.634 61.111 30.94 0.00 45.77 4.04
561 1077 3.179265 CGCGGCGAACAACGAGAT 61.179 61.111 19.16 0.00 45.77 2.75
562 1078 2.395690 GCGGCGAACAACGAGATG 59.604 61.111 12.98 0.00 45.77 2.90
563 1079 3.081133 CGGCGAACAACGAGATGG 58.919 61.111 0.00 0.00 45.77 3.51
564 1080 1.736645 CGGCGAACAACGAGATGGT 60.737 57.895 0.00 0.00 45.77 3.55
565 1081 1.787847 GGCGAACAACGAGATGGTG 59.212 57.895 0.00 0.00 45.77 4.17
566 1082 0.949105 GGCGAACAACGAGATGGTGT 60.949 55.000 0.00 0.00 45.77 4.16
567 1083 0.163788 GCGAACAACGAGATGGTGTG 59.836 55.000 0.00 0.00 45.77 3.82
568 1084 0.163788 CGAACAACGAGATGGTGTGC 59.836 55.000 0.00 0.00 45.77 4.57
569 1085 0.163788 GAACAACGAGATGGTGTGCG 59.836 55.000 0.00 0.00 0.00 5.34
570 1086 0.531974 AACAACGAGATGGTGTGCGT 60.532 50.000 0.00 0.00 38.81 5.24
571 1087 0.531974 ACAACGAGATGGTGTGCGTT 60.532 50.000 0.00 0.00 46.45 4.84
572 1088 1.269883 ACAACGAGATGGTGTGCGTTA 60.270 47.619 0.00 0.00 44.07 3.18
573 1089 1.126113 CAACGAGATGGTGTGCGTTAC 59.874 52.381 0.00 0.00 44.07 2.50
574 1090 0.731514 ACGAGATGGTGTGCGTTACG 60.732 55.000 0.00 0.00 32.42 3.18
575 1091 0.731514 CGAGATGGTGTGCGTTACGT 60.732 55.000 6.63 0.00 0.00 3.57
576 1092 0.713883 GAGATGGTGTGCGTTACGTG 59.286 55.000 6.63 0.00 0.00 4.49
577 1093 0.032952 AGATGGTGTGCGTTACGTGT 59.967 50.000 6.63 0.00 0.00 4.49
578 1094 0.437295 GATGGTGTGCGTTACGTGTC 59.563 55.000 6.63 0.00 0.00 3.67
579 1095 0.947180 ATGGTGTGCGTTACGTGTCC 60.947 55.000 6.63 5.20 0.00 4.02
580 1096 2.651137 GGTGTGCGTTACGTGTCCG 61.651 63.158 6.63 0.00 40.83 4.79
584 1100 3.820164 GCGTTACGTGTCCGCGTC 61.820 66.667 9.38 0.00 44.55 5.19
585 1101 3.517699 CGTTACGTGTCCGCGTCG 61.518 66.667 9.38 7.02 44.55 5.12
586 1102 2.127270 GTTACGTGTCCGCGTCGA 60.127 61.111 9.38 0.00 44.55 4.20
587 1103 2.127270 TTACGTGTCCGCGTCGAC 60.127 61.111 9.38 5.18 44.55 4.20
588 1104 2.891221 TTACGTGTCCGCGTCGACA 61.891 57.895 17.16 13.22 44.55 4.35
592 1108 2.337170 TGTCCGCGTCGACACATT 59.663 55.556 17.16 0.00 37.85 2.71
593 1109 1.300311 TGTCCGCGTCGACACATTT 60.300 52.632 17.16 0.00 37.85 2.32
594 1110 0.876777 TGTCCGCGTCGACACATTTT 60.877 50.000 17.16 0.00 37.85 1.82
595 1111 0.450482 GTCCGCGTCGACACATTTTG 60.450 55.000 17.16 0.00 32.74 2.44
596 1112 0.876777 TCCGCGTCGACACATTTTGT 60.877 50.000 17.16 0.00 43.10 2.83
597 1113 0.785378 CCGCGTCGACACATTTTGTA 59.215 50.000 17.16 0.00 39.17 2.41
598 1114 1.201769 CCGCGTCGACACATTTTGTAG 60.202 52.381 17.16 0.00 39.17 2.74
599 1115 1.454276 CGCGTCGACACATTTTGTAGT 59.546 47.619 17.16 0.00 39.17 2.73
600 1116 2.717595 CGCGTCGACACATTTTGTAGTG 60.718 50.000 17.16 0.00 39.17 2.74
601 1117 2.822827 CGTCGACACATTTTGTAGTGC 58.177 47.619 17.16 0.00 39.17 4.40
602 1118 2.219903 CGTCGACACATTTTGTAGTGCA 59.780 45.455 17.16 0.00 39.17 4.57
603 1119 3.302805 CGTCGACACATTTTGTAGTGCAA 60.303 43.478 17.16 0.00 39.17 4.08
604 1120 4.593157 GTCGACACATTTTGTAGTGCAAA 58.407 39.130 11.55 1.88 44.52 3.68
605 1121 5.212194 GTCGACACATTTTGTAGTGCAAAT 58.788 37.500 11.55 0.00 45.38 2.32
606 1122 5.685511 GTCGACACATTTTGTAGTGCAAATT 59.314 36.000 11.55 1.42 45.38 1.82
607 1123 6.198216 GTCGACACATTTTGTAGTGCAAATTT 59.802 34.615 11.55 0.00 45.38 1.82
608 1124 6.198029 TCGACACATTTTGTAGTGCAAATTTG 59.802 34.615 14.03 14.03 45.38 2.32
609 1125 6.198029 CGACACATTTTGTAGTGCAAATTTGA 59.802 34.615 22.31 4.41 45.38 2.69
610 1126 7.467557 ACACATTTTGTAGTGCAAATTTGAG 57.532 32.000 22.31 14.08 45.38 3.02
611 1127 6.018832 ACACATTTTGTAGTGCAAATTTGAGC 60.019 34.615 22.31 12.52 45.38 4.26
612 1128 6.018913 CACATTTTGTAGTGCAAATTTGAGCA 60.019 34.615 22.31 10.66 45.38 4.26
613 1129 6.201425 ACATTTTGTAGTGCAAATTTGAGCAG 59.799 34.615 22.31 1.48 45.38 4.24
614 1130 3.287312 TGTAGTGCAAATTTGAGCAGC 57.713 42.857 22.31 6.43 42.14 5.25
615 1131 2.622470 TGTAGTGCAAATTTGAGCAGCA 59.378 40.909 22.31 9.14 42.14 4.41
616 1132 2.894763 AGTGCAAATTTGAGCAGCAA 57.105 40.000 22.31 0.00 42.14 3.91
617 1133 5.910206 TTGTAGTGCAAATTTGAGCAGCAAA 60.910 36.000 22.31 7.13 42.14 3.68
627 1143 2.571611 GCAGCAAATGCGTCGACG 60.572 61.111 32.57 32.57 46.99 5.12
638 1154 2.730604 GTCGACGCGGACGGAAAA 60.731 61.111 22.77 5.75 46.04 2.29
639 1155 2.730604 TCGACGCGGACGGAAAAC 60.731 61.111 22.77 0.00 46.04 2.43
640 1156 3.031457 CGACGCGGACGGAAAACA 61.031 61.111 12.47 0.00 46.04 2.83
641 1157 2.851104 GACGCGGACGGAAAACAG 59.149 61.111 12.47 0.00 46.04 3.16
642 1158 1.662446 GACGCGGACGGAAAACAGA 60.662 57.895 12.47 0.00 46.04 3.41
643 1159 1.883725 GACGCGGACGGAAAACAGAC 61.884 60.000 12.47 0.00 46.04 3.51
644 1160 1.663702 CGCGGACGGAAAACAGACT 60.664 57.895 0.00 0.00 34.97 3.24
645 1161 1.615107 CGCGGACGGAAAACAGACTC 61.615 60.000 0.00 0.00 34.97 3.36
646 1162 0.599204 GCGGACGGAAAACAGACTCA 60.599 55.000 0.00 0.00 0.00 3.41
647 1163 1.860676 CGGACGGAAAACAGACTCAA 58.139 50.000 0.00 0.00 0.00 3.02
648 1164 2.413837 CGGACGGAAAACAGACTCAAT 58.586 47.619 0.00 0.00 0.00 2.57
649 1165 2.806244 CGGACGGAAAACAGACTCAATT 59.194 45.455 0.00 0.00 0.00 2.32
650 1166 3.250040 CGGACGGAAAACAGACTCAATTT 59.750 43.478 0.00 0.00 0.00 1.82
651 1167 4.537015 GGACGGAAAACAGACTCAATTTG 58.463 43.478 0.00 0.00 0.00 2.32
652 1168 4.274950 GGACGGAAAACAGACTCAATTTGA 59.725 41.667 0.00 0.00 0.00 2.69
665 1181 4.726416 CTCAATTTGAGTTTGGGTCGATG 58.274 43.478 16.71 0.00 39.58 3.84
666 1182 3.057596 TCAATTTGAGTTTGGGTCGATGC 60.058 43.478 0.00 0.00 0.00 3.91
667 1183 1.974265 TTTGAGTTTGGGTCGATGCA 58.026 45.000 0.00 0.00 0.00 3.96
668 1184 2.198827 TTGAGTTTGGGTCGATGCAT 57.801 45.000 0.00 0.00 0.00 3.96
669 1185 2.198827 TGAGTTTGGGTCGATGCATT 57.801 45.000 0.00 0.00 0.00 3.56
670 1186 1.811965 TGAGTTTGGGTCGATGCATTG 59.188 47.619 7.70 7.70 0.00 2.82
671 1187 1.133025 GAGTTTGGGTCGATGCATTGG 59.867 52.381 14.12 3.25 0.00 3.16
672 1188 0.173255 GTTTGGGTCGATGCATTGGG 59.827 55.000 14.12 0.65 0.00 4.12
673 1189 1.603236 TTTGGGTCGATGCATTGGGC 61.603 55.000 14.12 4.46 45.13 5.36
674 1190 3.219198 GGGTCGATGCATTGGGCC 61.219 66.667 14.12 13.24 43.89 5.80
675 1191 2.124151 GGTCGATGCATTGGGCCT 60.124 61.111 14.12 0.00 43.89 5.19
676 1192 2.189499 GGTCGATGCATTGGGCCTC 61.189 63.158 14.12 0.00 43.89 4.70
677 1193 1.153086 GTCGATGCATTGGGCCTCT 60.153 57.895 14.12 0.00 43.89 3.69
678 1194 0.749454 GTCGATGCATTGGGCCTCTT 60.749 55.000 14.12 0.00 43.89 2.85
679 1195 0.034186 TCGATGCATTGGGCCTCTTT 60.034 50.000 14.12 0.00 43.89 2.52
680 1196 0.819582 CGATGCATTGGGCCTCTTTT 59.180 50.000 4.53 0.00 43.89 2.27
681 1197 1.205417 CGATGCATTGGGCCTCTTTTT 59.795 47.619 4.53 0.00 43.89 1.94
710 1226 2.828549 GCGGGCGAATGGGTCATT 60.829 61.111 0.00 0.00 36.72 2.57
711 1227 2.414785 GCGGGCGAATGGGTCATTT 61.415 57.895 0.00 0.00 33.90 2.32
712 1228 1.944234 GCGGGCGAATGGGTCATTTT 61.944 55.000 0.00 0.00 33.90 1.82
713 1229 1.384525 CGGGCGAATGGGTCATTTTA 58.615 50.000 0.00 0.00 33.90 1.52
714 1230 1.953686 CGGGCGAATGGGTCATTTTAT 59.046 47.619 0.00 0.00 33.90 1.40
715 1231 2.360801 CGGGCGAATGGGTCATTTTATT 59.639 45.455 0.00 0.00 33.90 1.40
716 1232 3.716601 GGGCGAATGGGTCATTTTATTG 58.283 45.455 0.00 0.00 33.90 1.90
717 1233 3.492482 GGGCGAATGGGTCATTTTATTGG 60.492 47.826 0.00 0.00 33.90 3.16
718 1234 3.383185 GGCGAATGGGTCATTTTATTGGA 59.617 43.478 0.00 0.00 33.90 3.53
719 1235 4.499696 GGCGAATGGGTCATTTTATTGGAG 60.500 45.833 0.00 0.00 33.90 3.86
720 1236 4.097892 GCGAATGGGTCATTTTATTGGAGT 59.902 41.667 0.00 0.00 33.90 3.85
721 1237 5.394115 GCGAATGGGTCATTTTATTGGAGTT 60.394 40.000 0.00 0.00 33.90 3.01
722 1238 6.035843 CGAATGGGTCATTTTATTGGAGTTG 58.964 40.000 0.00 0.00 33.90 3.16
723 1239 4.799564 TGGGTCATTTTATTGGAGTTGC 57.200 40.909 0.00 0.00 0.00 4.17
724 1240 4.415596 TGGGTCATTTTATTGGAGTTGCT 58.584 39.130 0.00 0.00 0.00 3.91
725 1241 5.575157 TGGGTCATTTTATTGGAGTTGCTA 58.425 37.500 0.00 0.00 0.00 3.49
773 1300 3.245990 TGCGCTGAACAATTCTCATATCG 59.754 43.478 9.73 0.00 0.00 2.92
829 1357 5.335897 CCAAACCACGATGAATTCTTCACAT 60.336 40.000 18.39 0.00 43.48 3.21
892 1436 2.727777 TGTTCGTACGCTCATAGATGC 58.272 47.619 11.24 0.00 0.00 3.91
893 1437 2.098443 TGTTCGTACGCTCATAGATGCA 59.902 45.455 11.24 0.00 0.00 3.96
963 1512 3.410958 GCTAACTAAGCGGCAGGC 58.589 61.111 1.45 0.00 42.53 4.85
981 1546 4.442472 GCAGGCTTAAACCGGTAATCTAGA 60.442 45.833 8.00 0.00 33.69 2.43
1128 1859 3.135027 GGAGAGCCTCCGGTTCTAT 57.865 57.895 0.00 0.00 43.17 1.98
1140 1871 1.534163 CGGTTCTATCGCTCCGTCATA 59.466 52.381 0.00 0.00 38.45 2.15
1483 2286 4.923415 CCCAGACTAGGGTTGAAGAATTT 58.077 43.478 0.00 0.00 44.24 1.82
1502 2305 8.310122 AGAATTTGTGGTGCATCCTTAATTAT 57.690 30.769 0.00 0.00 37.07 1.28
1503 2306 8.416329 AGAATTTGTGGTGCATCCTTAATTATC 58.584 33.333 0.00 0.00 37.07 1.75
1504 2307 7.658525 ATTTGTGGTGCATCCTTAATTATCA 57.341 32.000 0.00 0.00 37.07 2.15
1507 2311 8.759481 TTGTGGTGCATCCTTAATTATCATTA 57.241 30.769 0.00 0.00 37.07 1.90
1725 2531 3.636231 CCTGTGTGGGCGAGGGAA 61.636 66.667 0.00 0.00 0.00 3.97
2477 3731 2.037772 CCATACTGTCCAGGATGTAGGC 59.962 54.545 16.37 0.00 46.10 3.93
2483 3737 2.700371 TGTCCAGGATGTAGGCATGTAG 59.300 50.000 0.00 0.00 35.07 2.74
2525 3779 3.443681 ACATAATCACTTTTCCTTGCGGG 59.556 43.478 0.00 0.00 0.00 6.13
2530 3784 1.200020 CACTTTTCCTTGCGGGACATC 59.800 52.381 0.00 0.00 45.03 3.06
2544 3798 5.184864 TGCGGGACATCTCAAACATAAATTT 59.815 36.000 0.00 0.00 0.00 1.82
2606 3861 8.273605 TCTAAAAAGTGTAGTTGGTTTTAGGGA 58.726 33.333 12.01 0.00 40.07 4.20
2615 3870 9.675464 TGTAGTTGGTTTTAGGGAATACTATTG 57.325 33.333 0.00 0.00 0.00 1.90
2628 3883 8.808092 AGGGAATACTATTGTCACTTATAGAGC 58.192 37.037 4.98 0.00 0.00 4.09
2629 3884 8.585881 GGGAATACTATTGTCACTTATAGAGCA 58.414 37.037 4.98 0.00 0.00 4.26
2645 3900 3.533606 GAGCATCTAAGAGCAGGAACA 57.466 47.619 0.00 0.00 0.00 3.18
2646 3901 3.194062 GAGCATCTAAGAGCAGGAACAC 58.806 50.000 0.00 0.00 0.00 3.32
2647 3902 2.836981 AGCATCTAAGAGCAGGAACACT 59.163 45.455 0.00 0.00 0.00 3.55
2648 3903 4.026744 AGCATCTAAGAGCAGGAACACTA 58.973 43.478 0.00 0.00 0.00 2.74
2649 3904 4.116238 GCATCTAAGAGCAGGAACACTAC 58.884 47.826 0.00 0.00 0.00 2.73
2650 3905 4.688021 CATCTAAGAGCAGGAACACTACC 58.312 47.826 0.00 0.00 0.00 3.18
2651 3906 4.048970 TCTAAGAGCAGGAACACTACCT 57.951 45.455 0.00 0.00 38.40 3.08
2652 3907 4.417437 TCTAAGAGCAGGAACACTACCTT 58.583 43.478 0.00 0.00 35.35 3.50
2653 3908 3.686916 AAGAGCAGGAACACTACCTTC 57.313 47.619 0.00 0.00 35.35 3.46
2654 3909 2.609747 AGAGCAGGAACACTACCTTCA 58.390 47.619 0.00 0.00 35.35 3.02
2655 3910 2.564947 AGAGCAGGAACACTACCTTCAG 59.435 50.000 0.00 0.00 35.35 3.02
2656 3911 1.625818 AGCAGGAACACTACCTTCAGG 59.374 52.381 0.00 0.00 42.17 3.86
2657 3912 1.946283 GCAGGAACACTACCTTCAGGC 60.946 57.143 0.00 0.00 39.32 4.85
2658 3913 1.347707 CAGGAACACTACCTTCAGGCA 59.652 52.381 0.00 0.00 39.32 4.75
2659 3914 2.054799 AGGAACACTACCTTCAGGCAA 58.945 47.619 0.00 0.00 39.32 4.52
2660 3915 2.644798 AGGAACACTACCTTCAGGCAAT 59.355 45.455 0.00 0.00 39.32 3.56
2661 3916 3.844211 AGGAACACTACCTTCAGGCAATA 59.156 43.478 0.00 0.00 39.32 1.90
2662 3917 4.475016 AGGAACACTACCTTCAGGCAATAT 59.525 41.667 0.00 0.00 39.32 1.28
2663 3918 4.576463 GGAACACTACCTTCAGGCAATATG 59.424 45.833 0.00 0.00 39.32 1.78
2664 3919 5.428253 GAACACTACCTTCAGGCAATATGA 58.572 41.667 0.00 0.00 39.32 2.15
2665 3920 5.435686 ACACTACCTTCAGGCAATATGAA 57.564 39.130 0.00 0.00 39.32 2.57
2666 3921 6.006275 ACACTACCTTCAGGCAATATGAAT 57.994 37.500 0.00 0.00 36.16 2.57
2667 3922 7.136822 ACACTACCTTCAGGCAATATGAATA 57.863 36.000 0.00 0.00 36.16 1.75
2668 3923 7.749666 ACACTACCTTCAGGCAATATGAATAT 58.250 34.615 0.00 0.00 36.16 1.28
2669 3924 8.880244 ACACTACCTTCAGGCAATATGAATATA 58.120 33.333 0.00 0.00 36.16 0.86
2670 3925 9.155975 CACTACCTTCAGGCAATATGAATATAC 57.844 37.037 0.00 0.00 36.16 1.47
2671 3926 8.880244 ACTACCTTCAGGCAATATGAATATACA 58.120 33.333 0.00 0.00 36.16 2.29
2672 3927 9.725019 CTACCTTCAGGCAATATGAATATACAA 57.275 33.333 0.00 0.00 36.16 2.41
2701 3956 9.748708 TGTTCTCAATTTTCTAAGGAACAAATG 57.251 29.630 0.00 0.00 38.62 2.32
2702 3957 9.750125 GTTCTCAATTTTCTAAGGAACAAATGT 57.250 29.630 0.00 0.00 33.91 2.71
2735 3990 9.635404 TTTTTCAAAGGGAGAATAGTACTTTCA 57.365 29.630 0.00 0.00 29.64 2.69
2736 3991 9.807921 TTTTCAAAGGGAGAATAGTACTTTCAT 57.192 29.630 0.00 0.00 29.64 2.57
2737 3992 8.792830 TTCAAAGGGAGAATAGTACTTTCATG 57.207 34.615 0.00 0.00 29.64 3.07
2738 3993 7.918076 TCAAAGGGAGAATAGTACTTTCATGT 58.082 34.615 0.00 0.00 29.64 3.21
2739 3994 8.383175 TCAAAGGGAGAATAGTACTTTCATGTT 58.617 33.333 0.00 0.00 29.64 2.71
2740 3995 9.667107 CAAAGGGAGAATAGTACTTTCATGTTA 57.333 33.333 0.00 0.00 29.64 2.41
2785 4040 2.554370 TTTCCACCGGAAACTGTAGG 57.446 50.000 9.46 0.00 45.42 3.18
2786 4041 1.719529 TTCCACCGGAAACTGTAGGA 58.280 50.000 9.46 0.00 38.93 2.94
2787 4042 1.719529 TCCACCGGAAACTGTAGGAA 58.280 50.000 9.46 0.00 0.00 3.36
2788 4043 2.262637 TCCACCGGAAACTGTAGGAAT 58.737 47.619 9.46 0.00 0.00 3.01
2789 4044 2.640826 TCCACCGGAAACTGTAGGAATT 59.359 45.455 9.46 0.00 0.00 2.17
2790 4045 3.007635 CCACCGGAAACTGTAGGAATTC 58.992 50.000 9.46 0.00 0.00 2.17
2791 4046 3.007635 CACCGGAAACTGTAGGAATTCC 58.992 50.000 17.31 17.31 38.35 3.01
2795 4050 3.268330 GGAAACTGTAGGAATTCCGTCC 58.732 50.000 18.82 13.05 42.08 4.79
2796 4051 3.268330 GAAACTGTAGGAATTCCGTCCC 58.732 50.000 18.82 8.54 42.08 4.46
2797 4052 1.946984 ACTGTAGGAATTCCGTCCCA 58.053 50.000 18.82 12.35 42.08 4.37
2798 4053 1.553704 ACTGTAGGAATTCCGTCCCAC 59.446 52.381 18.82 12.61 42.08 4.61
2799 4054 0.533491 TGTAGGAATTCCGTCCCACG 59.467 55.000 18.82 0.00 42.08 4.94
2817 4072 9.211485 CGTCCCACGGTAAATTTTTATATATCT 57.789 33.333 0.00 0.00 38.08 1.98
3342 4598 0.034863 GTTTCCTGGTTATGGGCCGA 60.035 55.000 0.00 0.00 0.00 5.54
3401 4657 2.025418 GCCGGCCCGATTACGTATG 61.025 63.158 18.11 0.00 37.88 2.39
3403 4659 1.300311 CGGCCCGATTACGTATGCA 60.300 57.895 0.00 0.00 37.88 3.96
3412 4668 4.093703 CCGATTACGTATGCAAGGTTTCAA 59.906 41.667 0.00 0.00 37.88 2.69
3413 4669 5.220777 CCGATTACGTATGCAAGGTTTCAAT 60.221 40.000 0.00 0.00 37.88 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 3.291101 TACCTCGAACAGTGGCGCC 62.291 63.158 22.73 22.73 37.00 6.53
90 91 3.818787 GAGGCGGCGTACCTCGAA 61.819 66.667 16.05 0.00 44.10 3.71
116 117 2.933287 TCTGGTTGGGGGCGATGT 60.933 61.111 0.00 0.00 0.00 3.06
118 119 4.096003 CGTCTGGTTGGGGGCGAT 62.096 66.667 0.00 0.00 0.00 4.58
128 129 3.991051 CCCTGTCGCACGTCTGGT 61.991 66.667 10.98 0.00 0.00 4.00
133 649 4.415332 CGCTACCCTGTCGCACGT 62.415 66.667 0.00 0.00 0.00 4.49
147 663 2.754658 CTCCTGTACCCCGACGCT 60.755 66.667 0.00 0.00 0.00 5.07
245 761 4.698625 AGTTCCTCCCGCCTCCGT 62.699 66.667 0.00 0.00 0.00 4.69
255 771 1.443802 CTTTTCCCGCAGAGTTCCTC 58.556 55.000 0.00 0.00 0.00 3.71
264 780 2.339556 CGCCATTCCTTTTCCCGCA 61.340 57.895 0.00 0.00 0.00 5.69
266 782 2.414785 CCCGCCATTCCTTTTCCCG 61.415 63.158 0.00 0.00 0.00 5.14
291 807 3.907130 AGCAGCAAGGCCAAGGGT 61.907 61.111 5.01 0.00 0.00 4.34
322 838 4.386312 CCAATAAAACCAGATGGGCCTCTA 60.386 45.833 4.53 0.00 42.05 2.43
337 853 2.004589 ACCCTAGCCACCCCAATAAAA 58.995 47.619 0.00 0.00 0.00 1.52
340 856 1.286553 CAAACCCTAGCCACCCCAATA 59.713 52.381 0.00 0.00 0.00 1.90
341 857 0.041090 CAAACCCTAGCCACCCCAAT 59.959 55.000 0.00 0.00 0.00 3.16
342 858 1.462928 CAAACCCTAGCCACCCCAA 59.537 57.895 0.00 0.00 0.00 4.12
344 860 2.362503 GCAAACCCTAGCCACCCC 60.363 66.667 0.00 0.00 0.00 4.95
369 885 2.461986 TAGCCACACTCTGCTCCCCT 62.462 60.000 0.00 0.00 39.00 4.79
370 886 1.965754 CTAGCCACACTCTGCTCCCC 61.966 65.000 0.00 0.00 39.00 4.81
376 892 0.467384 CCCCATCTAGCCACACTCTG 59.533 60.000 0.00 0.00 0.00 3.35
410 926 0.598419 GGACCGTCCTCGTTCGTTTT 60.598 55.000 10.59 0.00 32.53 2.43
411 927 1.006922 GGACCGTCCTCGTTCGTTT 60.007 57.895 10.59 0.00 32.53 3.60
412 928 2.647297 GGACCGTCCTCGTTCGTT 59.353 61.111 10.59 0.00 32.53 3.85
413 929 3.368571 GGGACCGTCCTCGTTCGT 61.369 66.667 17.27 0.00 36.57 3.85
414 930 3.367743 TGGGACCGTCCTCGTTCG 61.368 66.667 17.27 0.00 36.57 3.95
415 931 2.260743 GTGGGACCGTCCTCGTTC 59.739 66.667 17.27 0.79 36.57 3.95
416 932 3.308705 GGTGGGACCGTCCTCGTT 61.309 66.667 17.27 0.00 36.57 3.85
433 949 1.570475 TTTTTAAGCCGACCGTGCG 59.430 52.632 0.00 0.00 0.00 5.34
468 984 3.108289 CTCAGGCACACGCGTCAG 61.108 66.667 9.86 5.82 39.92 3.51
469 985 4.662961 CCTCAGGCACACGCGTCA 62.663 66.667 9.86 0.00 39.92 4.35
470 986 4.664677 ACCTCAGGCACACGCGTC 62.665 66.667 9.86 0.00 39.92 5.19
471 987 4.664677 GACCTCAGGCACACGCGT 62.665 66.667 5.58 5.58 39.92 6.01
472 988 2.557059 TATGACCTCAGGCACACGCG 62.557 60.000 3.53 3.53 39.92 6.01
473 989 0.391130 TTATGACCTCAGGCACACGC 60.391 55.000 0.00 0.00 37.44 5.34
474 990 2.093306 TTTATGACCTCAGGCACACG 57.907 50.000 0.00 0.00 0.00 4.49
475 991 5.449177 GCTTAATTTATGACCTCAGGCACAC 60.449 44.000 0.00 0.00 0.00 3.82
476 992 4.640201 GCTTAATTTATGACCTCAGGCACA 59.360 41.667 0.00 0.00 0.00 4.57
477 993 4.884164 AGCTTAATTTATGACCTCAGGCAC 59.116 41.667 0.00 0.00 0.00 5.01
478 994 4.883585 CAGCTTAATTTATGACCTCAGGCA 59.116 41.667 0.00 0.00 0.00 4.75
479 995 5.008118 GTCAGCTTAATTTATGACCTCAGGC 59.992 44.000 0.00 0.00 36.83 4.85
480 996 6.352516 AGTCAGCTTAATTTATGACCTCAGG 58.647 40.000 0.00 0.00 42.39 3.86
481 997 7.655328 CCTAGTCAGCTTAATTTATGACCTCAG 59.345 40.741 5.45 2.50 42.39 3.35
482 998 7.125811 ACCTAGTCAGCTTAATTTATGACCTCA 59.874 37.037 5.45 0.00 42.39 3.86
483 999 7.501844 ACCTAGTCAGCTTAATTTATGACCTC 58.498 38.462 5.45 0.00 42.39 3.85
484 1000 7.439108 ACCTAGTCAGCTTAATTTATGACCT 57.561 36.000 5.45 0.00 42.39 3.85
485 1001 7.873505 CCTACCTAGTCAGCTTAATTTATGACC 59.126 40.741 5.45 0.00 42.39 4.02
486 1002 7.385478 GCCTACCTAGTCAGCTTAATTTATGAC 59.615 40.741 0.00 0.00 41.86 3.06
487 1003 7.290248 AGCCTACCTAGTCAGCTTAATTTATGA 59.710 37.037 0.00 0.00 0.00 2.15
488 1004 7.445945 AGCCTACCTAGTCAGCTTAATTTATG 58.554 38.462 0.00 0.00 0.00 1.90
489 1005 7.619512 AGCCTACCTAGTCAGCTTAATTTAT 57.380 36.000 0.00 0.00 0.00 1.40
490 1006 8.585881 CATAGCCTACCTAGTCAGCTTAATTTA 58.414 37.037 0.00 0.00 35.03 1.40
491 1007 5.959583 AGCCTACCTAGTCAGCTTAATTT 57.040 39.130 0.00 0.00 0.00 1.82
492 1008 6.014156 CCATAGCCTACCTAGTCAGCTTAATT 60.014 42.308 0.00 0.00 35.03 1.40
493 1009 5.482175 CCATAGCCTACCTAGTCAGCTTAAT 59.518 44.000 0.00 0.00 35.03 1.40
494 1010 4.833380 CCATAGCCTACCTAGTCAGCTTAA 59.167 45.833 0.00 0.00 35.03 1.85
495 1011 4.408276 CCATAGCCTACCTAGTCAGCTTA 58.592 47.826 0.00 0.00 35.03 3.09
496 1012 3.235200 CCATAGCCTACCTAGTCAGCTT 58.765 50.000 0.00 0.00 35.03 3.74
497 1013 2.491825 CCCATAGCCTACCTAGTCAGCT 60.492 54.545 0.00 0.00 37.58 4.24
498 1014 1.896465 CCCATAGCCTACCTAGTCAGC 59.104 57.143 0.00 0.00 0.00 4.26
499 1015 1.896465 GCCCATAGCCTACCTAGTCAG 59.104 57.143 0.00 0.00 34.35 3.51
500 1016 1.219469 TGCCCATAGCCTACCTAGTCA 59.781 52.381 0.00 0.00 42.71 3.41
501 1017 1.896465 CTGCCCATAGCCTACCTAGTC 59.104 57.143 0.00 0.00 42.71 2.59
502 1018 1.220750 ACTGCCCATAGCCTACCTAGT 59.779 52.381 0.00 0.00 42.71 2.57
503 1019 2.016905 ACTGCCCATAGCCTACCTAG 57.983 55.000 0.00 0.00 42.71 3.02
504 1020 2.047061 CAACTGCCCATAGCCTACCTA 58.953 52.381 0.00 0.00 42.71 3.08
505 1021 0.839946 CAACTGCCCATAGCCTACCT 59.160 55.000 0.00 0.00 42.71 3.08
506 1022 0.179018 CCAACTGCCCATAGCCTACC 60.179 60.000 0.00 0.00 42.71 3.18
507 1023 0.837272 TCCAACTGCCCATAGCCTAC 59.163 55.000 0.00 0.00 42.71 3.18
508 1024 0.837272 GTCCAACTGCCCATAGCCTA 59.163 55.000 0.00 0.00 42.71 3.93
509 1025 1.609783 GTCCAACTGCCCATAGCCT 59.390 57.895 0.00 0.00 42.71 4.58
510 1026 1.819632 CGTCCAACTGCCCATAGCC 60.820 63.158 0.00 0.00 42.71 3.93
511 1027 1.090052 GTCGTCCAACTGCCCATAGC 61.090 60.000 0.00 0.00 44.14 2.97
512 1028 0.462047 GGTCGTCCAACTGCCCATAG 60.462 60.000 0.00 0.00 0.00 2.23
513 1029 1.600107 GGTCGTCCAACTGCCCATA 59.400 57.895 0.00 0.00 0.00 2.74
514 1030 2.351276 GGTCGTCCAACTGCCCAT 59.649 61.111 0.00 0.00 0.00 4.00
515 1031 4.308458 CGGTCGTCCAACTGCCCA 62.308 66.667 0.00 0.00 0.00 5.36
516 1032 4.309950 ACGGTCGTCCAACTGCCC 62.310 66.667 0.00 0.00 0.00 5.36
517 1033 2.737376 GACGGTCGTCCAACTGCC 60.737 66.667 11.96 0.00 39.08 4.85
518 1034 2.022129 CTGACGGTCGTCCAACTGC 61.022 63.158 18.96 0.00 43.97 4.40
519 1035 1.372997 CCTGACGGTCGTCCAACTG 60.373 63.158 18.96 6.01 43.97 3.16
520 1036 1.831286 ACCTGACGGTCGTCCAACT 60.831 57.895 18.96 0.00 40.27 3.16
521 1037 1.663702 CACCTGACGGTCGTCCAAC 60.664 63.158 18.96 0.00 43.24 3.77
522 1038 1.393487 TTCACCTGACGGTCGTCCAA 61.393 55.000 18.96 2.67 43.24 3.53
523 1039 1.802337 CTTCACCTGACGGTCGTCCA 61.802 60.000 18.96 7.92 43.24 4.02
524 1040 1.080705 CTTCACCTGACGGTCGTCC 60.081 63.158 18.96 4.02 43.24 4.79
525 1041 0.386985 GTCTTCACCTGACGGTCGTC 60.387 60.000 15.60 15.60 43.24 4.20
526 1042 1.658673 GTCTTCACCTGACGGTCGT 59.341 57.895 3.34 0.00 43.24 4.34
527 1043 4.554163 GTCTTCACCTGACGGTCG 57.446 61.111 3.34 0.00 43.24 4.79
532 1048 3.112709 GCCGCGTCTTCACCTGAC 61.113 66.667 4.92 0.00 0.00 3.51
533 1049 4.717629 CGCCGCGTCTTCACCTGA 62.718 66.667 4.92 0.00 0.00 3.86
534 1050 4.717629 TCGCCGCGTCTTCACCTG 62.718 66.667 13.39 0.00 0.00 4.00
535 1051 3.986006 TTCGCCGCGTCTTCACCT 61.986 61.111 13.39 0.00 0.00 4.00
536 1052 3.774702 GTTCGCCGCGTCTTCACC 61.775 66.667 13.39 0.00 0.00 4.02
537 1053 2.591311 TTGTTCGCCGCGTCTTCAC 61.591 57.895 13.39 4.07 0.00 3.18
538 1054 2.279584 TTGTTCGCCGCGTCTTCA 60.280 55.556 13.39 5.39 0.00 3.02
539 1055 2.170273 GTTGTTCGCCGCGTCTTC 59.830 61.111 13.39 2.86 0.00 2.87
540 1056 3.698463 CGTTGTTCGCCGCGTCTT 61.698 61.111 13.39 0.00 0.00 3.01
541 1057 4.634133 TCGTTGTTCGCCGCGTCT 62.634 61.111 13.39 0.00 39.67 4.18
542 1058 4.117372 CTCGTTGTTCGCCGCGTC 62.117 66.667 13.39 8.10 39.67 5.19
543 1059 3.909258 ATCTCGTTGTTCGCCGCGT 62.909 57.895 13.39 0.00 39.67 6.01
544 1060 3.179265 ATCTCGTTGTTCGCCGCG 61.179 61.111 6.39 6.39 39.67 6.46
545 1061 2.395690 CATCTCGTTGTTCGCCGC 59.604 61.111 0.00 0.00 39.67 6.53
546 1062 1.736645 ACCATCTCGTTGTTCGCCG 60.737 57.895 0.00 0.00 39.67 6.46
547 1063 0.949105 ACACCATCTCGTTGTTCGCC 60.949 55.000 0.00 0.00 39.67 5.54
548 1064 0.163788 CACACCATCTCGTTGTTCGC 59.836 55.000 0.00 0.00 39.67 4.70
549 1065 0.163788 GCACACCATCTCGTTGTTCG 59.836 55.000 0.00 0.00 41.41 3.95
550 1066 0.163788 CGCACACCATCTCGTTGTTC 59.836 55.000 0.00 0.00 0.00 3.18
551 1067 0.531974 ACGCACACCATCTCGTTGTT 60.532 50.000 0.00 0.00 0.00 2.83
552 1068 0.531974 AACGCACACCATCTCGTTGT 60.532 50.000 0.00 0.00 42.55 3.32
553 1069 1.126113 GTAACGCACACCATCTCGTTG 59.874 52.381 8.81 0.00 43.70 4.10
554 1070 1.425412 GTAACGCACACCATCTCGTT 58.575 50.000 4.35 4.35 45.46 3.85
555 1071 0.731514 CGTAACGCACACCATCTCGT 60.732 55.000 0.00 0.00 36.67 4.18
556 1072 0.731514 ACGTAACGCACACCATCTCG 60.732 55.000 0.00 0.00 0.00 4.04
557 1073 0.713883 CACGTAACGCACACCATCTC 59.286 55.000 0.00 0.00 0.00 2.75
558 1074 0.032952 ACACGTAACGCACACCATCT 59.967 50.000 0.00 0.00 0.00 2.90
559 1075 0.437295 GACACGTAACGCACACCATC 59.563 55.000 0.00 0.00 0.00 3.51
560 1076 0.947180 GGACACGTAACGCACACCAT 60.947 55.000 0.00 0.00 0.00 3.55
561 1077 1.592131 GGACACGTAACGCACACCA 60.592 57.895 0.00 0.00 0.00 4.17
562 1078 2.651137 CGGACACGTAACGCACACC 61.651 63.158 0.00 0.00 34.81 4.16
563 1079 2.841389 CGGACACGTAACGCACAC 59.159 61.111 0.00 0.00 34.81 3.82
575 1091 0.876777 AAAATGTGTCGACGCGGACA 60.877 50.000 23.01 15.77 44.25 4.02
576 1092 0.450482 CAAAATGTGTCGACGCGGAC 60.450 55.000 23.01 10.03 37.45 4.79
577 1093 0.876777 ACAAAATGTGTCGACGCGGA 60.877 50.000 23.01 8.10 34.38 5.54
578 1094 0.785378 TACAAAATGTGTCGACGCGG 59.215 50.000 23.01 12.48 41.98 6.46
579 1095 1.454276 ACTACAAAATGTGTCGACGCG 59.546 47.619 23.01 3.53 41.98 6.01
580 1096 2.822827 CACTACAAAATGTGTCGACGC 58.177 47.619 22.00 22.00 41.98 5.19
581 1097 2.219903 TGCACTACAAAATGTGTCGACG 59.780 45.455 11.62 0.00 41.98 5.12
582 1098 3.870723 TGCACTACAAAATGTGTCGAC 57.129 42.857 9.11 9.11 41.98 4.20
583 1099 4.884458 TTTGCACTACAAAATGTGTCGA 57.116 36.364 0.00 0.00 45.22 4.20
593 1109 3.067883 TGCTGCTCAAATTTGCACTACAA 59.932 39.130 13.54 0.00 35.20 2.41
594 1110 2.622470 TGCTGCTCAAATTTGCACTACA 59.378 40.909 13.54 6.18 35.20 2.74
595 1111 3.287312 TGCTGCTCAAATTTGCACTAC 57.713 42.857 13.54 3.71 35.20 2.73
596 1112 4.319139 TTTGCTGCTCAAATTTGCACTA 57.681 36.364 13.54 0.00 39.58 2.74
597 1113 2.894763 TTGCTGCTCAAATTTGCACT 57.105 40.000 13.54 0.00 35.20 4.40
621 1137 2.730604 TTTTCCGTCCGCGTCGAC 60.731 61.111 19.41 5.18 36.15 4.20
622 1138 2.730604 GTTTTCCGTCCGCGTCGA 60.731 61.111 19.41 1.70 36.15 4.20
623 1139 2.995450 CTGTTTTCCGTCCGCGTCG 61.995 63.158 4.92 9.74 36.15 5.12
624 1140 1.662446 TCTGTTTTCCGTCCGCGTC 60.662 57.895 4.92 0.00 36.15 5.19
625 1141 1.952635 GTCTGTTTTCCGTCCGCGT 60.953 57.895 4.92 0.00 36.15 6.01
626 1142 1.615107 GAGTCTGTTTTCCGTCCGCG 61.615 60.000 0.00 0.00 37.95 6.46
627 1143 0.599204 TGAGTCTGTTTTCCGTCCGC 60.599 55.000 0.00 0.00 0.00 5.54
628 1144 1.860676 TTGAGTCTGTTTTCCGTCCG 58.139 50.000 0.00 0.00 0.00 4.79
629 1145 4.274950 TCAAATTGAGTCTGTTTTCCGTCC 59.725 41.667 0.00 0.00 0.00 4.79
630 1146 5.418310 TCAAATTGAGTCTGTTTTCCGTC 57.582 39.130 0.00 0.00 0.00 4.79
631 1147 5.424121 CTCAAATTGAGTCTGTTTTCCGT 57.576 39.130 14.47 0.00 39.58 4.69
644 1160 3.057596 GCATCGACCCAAACTCAAATTGA 60.058 43.478 0.00 0.00 0.00 2.57
645 1161 3.244976 GCATCGACCCAAACTCAAATTG 58.755 45.455 0.00 0.00 0.00 2.32
646 1162 2.890311 TGCATCGACCCAAACTCAAATT 59.110 40.909 0.00 0.00 0.00 1.82
647 1163 2.513753 TGCATCGACCCAAACTCAAAT 58.486 42.857 0.00 0.00 0.00 2.32
648 1164 1.974265 TGCATCGACCCAAACTCAAA 58.026 45.000 0.00 0.00 0.00 2.69
649 1165 2.198827 ATGCATCGACCCAAACTCAA 57.801 45.000 0.00 0.00 0.00 3.02
650 1166 1.811965 CAATGCATCGACCCAAACTCA 59.188 47.619 0.00 0.00 0.00 3.41
651 1167 1.133025 CCAATGCATCGACCCAAACTC 59.867 52.381 0.00 0.00 0.00 3.01
652 1168 1.176527 CCAATGCATCGACCCAAACT 58.823 50.000 0.00 0.00 0.00 2.66
653 1169 0.173255 CCCAATGCATCGACCCAAAC 59.827 55.000 0.00 0.00 0.00 2.93
654 1170 1.603236 GCCCAATGCATCGACCCAAA 61.603 55.000 0.00 0.00 40.77 3.28
655 1171 2.051518 GCCCAATGCATCGACCCAA 61.052 57.895 0.00 0.00 40.77 4.12
656 1172 2.440065 GCCCAATGCATCGACCCA 60.440 61.111 0.00 0.00 40.77 4.51
657 1173 3.219198 GGCCCAATGCATCGACCC 61.219 66.667 0.00 0.00 43.89 4.46
658 1174 2.124151 AGGCCCAATGCATCGACC 60.124 61.111 0.00 0.00 43.89 4.79
659 1175 3.425422 GAGGCCCAATGCATCGAC 58.575 61.111 0.00 0.00 41.45 4.20
693 1209 1.944234 AAAATGACCCATTCGCCCGC 61.944 55.000 0.00 0.00 32.43 6.13
694 1210 1.384525 TAAAATGACCCATTCGCCCG 58.615 50.000 0.00 0.00 32.43 6.13
695 1211 3.492482 CCAATAAAATGACCCATTCGCCC 60.492 47.826 0.00 0.00 32.43 6.13
696 1212 3.383185 TCCAATAAAATGACCCATTCGCC 59.617 43.478 0.00 0.00 32.43 5.54
697 1213 4.097892 ACTCCAATAAAATGACCCATTCGC 59.902 41.667 0.00 0.00 32.43 4.70
698 1214 5.835113 ACTCCAATAAAATGACCCATTCG 57.165 39.130 0.00 0.00 32.43 3.34
699 1215 5.812127 GCAACTCCAATAAAATGACCCATTC 59.188 40.000 0.00 0.00 32.43 2.67
700 1216 5.484998 AGCAACTCCAATAAAATGACCCATT 59.515 36.000 0.00 0.00 35.39 3.16
701 1217 5.025453 AGCAACTCCAATAAAATGACCCAT 58.975 37.500 0.00 0.00 0.00 4.00
702 1218 4.415596 AGCAACTCCAATAAAATGACCCA 58.584 39.130 0.00 0.00 0.00 4.51
703 1219 6.715347 ATAGCAACTCCAATAAAATGACCC 57.285 37.500 0.00 0.00 0.00 4.46
704 1220 7.862873 GCTTATAGCAACTCCAATAAAATGACC 59.137 37.037 0.00 0.00 41.89 4.02
705 1221 7.587757 CGCTTATAGCAACTCCAATAAAATGAC 59.412 37.037 0.00 0.00 42.58 3.06
706 1222 7.497579 TCGCTTATAGCAACTCCAATAAAATGA 59.502 33.333 0.00 0.00 42.58 2.57
707 1223 7.587757 GTCGCTTATAGCAACTCCAATAAAATG 59.412 37.037 0.00 0.00 42.58 2.32
708 1224 7.255139 GGTCGCTTATAGCAACTCCAATAAAAT 60.255 37.037 0.00 0.00 42.58 1.82
709 1225 6.037830 GGTCGCTTATAGCAACTCCAATAAAA 59.962 38.462 0.00 0.00 42.58 1.52
710 1226 5.526111 GGTCGCTTATAGCAACTCCAATAAA 59.474 40.000 0.00 0.00 42.58 1.40
711 1227 5.054477 GGTCGCTTATAGCAACTCCAATAA 58.946 41.667 0.00 0.00 42.58 1.40
712 1228 4.628074 GGTCGCTTATAGCAACTCCAATA 58.372 43.478 0.00 0.00 42.58 1.90
713 1229 3.467803 GGTCGCTTATAGCAACTCCAAT 58.532 45.455 0.00 0.00 42.58 3.16
714 1230 2.737359 CGGTCGCTTATAGCAACTCCAA 60.737 50.000 0.00 0.00 42.58 3.53
715 1231 1.202371 CGGTCGCTTATAGCAACTCCA 60.202 52.381 0.00 0.00 42.58 3.86
716 1232 1.488527 CGGTCGCTTATAGCAACTCC 58.511 55.000 0.00 0.00 42.58 3.85
717 1233 1.066605 TCCGGTCGCTTATAGCAACTC 59.933 52.381 0.00 0.00 42.58 3.01
718 1234 1.108776 TCCGGTCGCTTATAGCAACT 58.891 50.000 0.00 0.00 42.58 3.16
719 1235 1.206523 GTCCGGTCGCTTATAGCAAC 58.793 55.000 0.00 0.00 42.58 4.17
720 1236 0.103572 GGTCCGGTCGCTTATAGCAA 59.896 55.000 0.00 0.00 42.58 3.91
721 1237 1.038681 TGGTCCGGTCGCTTATAGCA 61.039 55.000 0.00 0.00 42.58 3.49
722 1238 0.596859 GTGGTCCGGTCGCTTATAGC 60.597 60.000 0.00 0.00 38.02 2.97
723 1239 0.317603 CGTGGTCCGGTCGCTTATAG 60.318 60.000 0.00 0.00 0.00 1.31
724 1240 1.729276 CGTGGTCCGGTCGCTTATA 59.271 57.895 0.00 0.00 0.00 0.98
725 1241 2.493030 CGTGGTCCGGTCGCTTAT 59.507 61.111 0.00 0.00 0.00 1.73
750 1270 2.907910 ATGAGAATTGTTCAGCGCAC 57.092 45.000 11.47 0.00 0.00 5.34
751 1271 3.245990 CGATATGAGAATTGTTCAGCGCA 59.754 43.478 11.47 0.00 0.00 6.09
773 1300 4.342352 CGAAGCAAGAAAATGGGAGTAC 57.658 45.455 0.00 0.00 0.00 2.73
829 1357 0.592637 TCGAGTTTACGGCTTCACGA 59.407 50.000 0.00 0.00 37.61 4.35
892 1436 3.541709 CGTAGTCGATCGTCTAGTGTGTG 60.542 52.174 20.01 5.25 39.71 3.82
893 1437 2.602211 CGTAGTCGATCGTCTAGTGTGT 59.398 50.000 20.01 0.00 39.71 3.72
962 1511 5.919707 GCTAGTCTAGATTACCGGTTTAAGC 59.080 44.000 15.04 4.43 0.00 3.09
963 1512 6.141462 CGCTAGTCTAGATTACCGGTTTAAG 58.859 44.000 15.04 3.98 0.00 1.85
964 1513 5.506317 GCGCTAGTCTAGATTACCGGTTTAA 60.506 44.000 15.04 0.99 0.00 1.52
965 1514 4.023707 GCGCTAGTCTAGATTACCGGTTTA 60.024 45.833 15.04 0.87 0.00 2.01
1128 1859 2.563261 AGAGGTATATGACGGAGCGA 57.437 50.000 0.00 0.00 0.00 4.93
1140 1871 2.203596 CGGCCCCGGTAGAGGTAT 60.204 66.667 0.00 0.00 35.56 2.73
1189 1920 1.441729 CCAGGCCGTGACGTATGAT 59.558 57.895 3.64 0.00 0.00 2.45
1330 2061 2.504244 GTCGCCGAACTCGTCCAG 60.504 66.667 0.00 0.00 37.74 3.86
1463 2235 5.182001 CCACAAATTCTTCAACCCTAGTCTG 59.818 44.000 0.00 0.00 0.00 3.51
1467 2244 4.321230 GCACCACAAATTCTTCAACCCTAG 60.321 45.833 0.00 0.00 0.00 3.02
1483 2286 8.759481 TTAATGATAATTAAGGATGCACCACA 57.241 30.769 7.86 0.00 42.04 4.17
1530 2334 3.504520 TGCATGTCAGTCTCACGTACTTA 59.495 43.478 0.00 0.00 0.00 2.24
1531 2335 2.296190 TGCATGTCAGTCTCACGTACTT 59.704 45.455 0.00 0.00 0.00 2.24
1532 2336 1.886542 TGCATGTCAGTCTCACGTACT 59.113 47.619 0.00 0.00 0.00 2.73
1560 2364 0.460109 TCGTCACCTTCATGCCATCG 60.460 55.000 0.00 0.00 0.00 3.84
1710 2516 2.847234 AGTTCCCTCGCCCACACA 60.847 61.111 0.00 0.00 0.00 3.72
1749 2555 2.613696 TGCTGGTAGGTGGGGCAT 60.614 61.111 0.00 0.00 0.00 4.40
1757 2563 1.380785 TACTCGGGGTGCTGGTAGG 60.381 63.158 0.00 0.00 0.00 3.18
2159 3317 3.642008 GACTGCGCGTAGTCGTCGT 62.642 63.158 35.36 12.74 37.88 4.34
2325 3557 0.888736 CAGGAATGTGGAACGTGGCA 60.889 55.000 0.00 0.00 42.39 4.92
2432 3664 3.365265 CCACGCCACTTGAAGCCC 61.365 66.667 0.00 0.00 0.00 5.19
2439 3671 4.681978 GCCGACTCCACGCCACTT 62.682 66.667 0.00 0.00 0.00 3.16
2458 3708 3.046283 TGCCTACATCCTGGACAGTAT 57.954 47.619 0.00 0.00 0.00 2.12
2460 3710 1.487976 CATGCCTACATCCTGGACAGT 59.512 52.381 0.00 3.50 32.87 3.55
2477 3731 2.816087 AGTTGTGCTTTCAGGCTACATG 59.184 45.455 0.00 0.00 0.00 3.21
2483 3737 2.185004 TAGGAGTTGTGCTTTCAGGC 57.815 50.000 0.00 0.00 0.00 4.85
2525 3779 9.859427 TGGATTCAAATTTATGTTTGAGATGTC 57.141 29.630 0.00 0.00 45.67 3.06
2562 3816 9.515020 CTTTTTAGAAAGTCAAAGCATGTTACA 57.485 29.630 0.00 0.00 37.94 2.41
2615 3870 6.976088 TGCTCTTAGATGCTCTATAAGTGAC 58.024 40.000 5.56 0.00 0.00 3.67
2623 3878 4.098654 GTGTTCCTGCTCTTAGATGCTCTA 59.901 45.833 5.56 0.00 0.00 2.43
2625 3880 3.118811 AGTGTTCCTGCTCTTAGATGCTC 60.119 47.826 5.56 0.00 0.00 4.26
2626 3881 2.836981 AGTGTTCCTGCTCTTAGATGCT 59.163 45.455 5.56 0.00 0.00 3.79
2627 3882 3.258971 AGTGTTCCTGCTCTTAGATGC 57.741 47.619 0.00 0.00 0.00 3.91
2628 3883 4.404073 AGGTAGTGTTCCTGCTCTTAGATG 59.596 45.833 0.00 0.00 33.62 2.90
2629 3884 4.615513 AGGTAGTGTTCCTGCTCTTAGAT 58.384 43.478 0.00 0.00 33.62 1.98
2630 3885 4.048970 AGGTAGTGTTCCTGCTCTTAGA 57.951 45.455 0.00 0.00 33.62 2.10
2631 3886 4.220821 TGAAGGTAGTGTTCCTGCTCTTAG 59.779 45.833 0.00 0.00 35.27 2.18
2632 3887 4.157246 TGAAGGTAGTGTTCCTGCTCTTA 58.843 43.478 0.00 0.00 35.27 2.10
2633 3888 2.972713 TGAAGGTAGTGTTCCTGCTCTT 59.027 45.455 0.00 0.00 35.27 2.85
2634 3889 2.564947 CTGAAGGTAGTGTTCCTGCTCT 59.435 50.000 0.00 0.00 35.27 4.09
2635 3890 2.354203 CCTGAAGGTAGTGTTCCTGCTC 60.354 54.545 0.00 0.00 35.27 4.26
2636 3891 1.625818 CCTGAAGGTAGTGTTCCTGCT 59.374 52.381 0.00 0.00 35.27 4.24
2637 3892 1.946283 GCCTGAAGGTAGTGTTCCTGC 60.946 57.143 0.00 0.00 37.57 4.85
2638 3893 1.347707 TGCCTGAAGGTAGTGTTCCTG 59.652 52.381 0.00 0.00 37.57 3.86
2639 3894 1.729586 TGCCTGAAGGTAGTGTTCCT 58.270 50.000 0.00 0.00 37.57 3.36
2640 3895 2.561478 TTGCCTGAAGGTAGTGTTCC 57.439 50.000 0.00 0.00 37.57 3.62
2641 3896 5.428253 TCATATTGCCTGAAGGTAGTGTTC 58.572 41.667 0.00 0.00 37.57 3.18
2642 3897 5.435686 TCATATTGCCTGAAGGTAGTGTT 57.564 39.130 0.00 0.00 37.57 3.32
2643 3898 5.435686 TTCATATTGCCTGAAGGTAGTGT 57.564 39.130 0.00 0.00 37.57 3.55
2644 3899 9.155975 GTATATTCATATTGCCTGAAGGTAGTG 57.844 37.037 0.00 0.00 36.16 2.74
2645 3900 8.880244 TGTATATTCATATTGCCTGAAGGTAGT 58.120 33.333 0.00 0.00 36.16 2.73
2646 3901 9.725019 TTGTATATTCATATTGCCTGAAGGTAG 57.275 33.333 0.00 0.00 36.16 3.18
2675 3930 9.748708 CATTTGTTCCTTAGAAAATTGAGAACA 57.251 29.630 0.00 0.00 40.06 3.18
2676 3931 9.750125 ACATTTGTTCCTTAGAAAATTGAGAAC 57.250 29.630 0.00 0.00 32.58 3.01
2709 3964 9.635404 TGAAAGTACTATTCTCCCTTTGAAAAA 57.365 29.630 14.65 0.00 0.00 1.94
2710 3965 9.807921 ATGAAAGTACTATTCTCCCTTTGAAAA 57.192 29.630 14.65 0.00 0.00 2.29
2711 3966 9.231297 CATGAAAGTACTATTCTCCCTTTGAAA 57.769 33.333 14.65 0.00 0.00 2.69
2712 3967 8.383175 ACATGAAAGTACTATTCTCCCTTTGAA 58.617 33.333 0.00 0.00 0.00 2.69
2713 3968 7.918076 ACATGAAAGTACTATTCTCCCTTTGA 58.082 34.615 0.00 0.00 0.00 2.69
2714 3969 8.567285 AACATGAAAGTACTATTCTCCCTTTG 57.433 34.615 0.00 8.26 0.00 2.77
2767 4022 1.719529 TCCTACAGTTTCCGGTGGAA 58.280 50.000 0.00 0.00 40.27 3.53
2768 4023 1.719529 TTCCTACAGTTTCCGGTGGA 58.280 50.000 0.00 0.00 0.00 4.02
2769 4024 2.781681 ATTCCTACAGTTTCCGGTGG 57.218 50.000 0.00 0.00 0.00 4.61
2770 4025 3.007635 GGAATTCCTACAGTTTCCGGTG 58.992 50.000 17.73 0.00 0.00 4.94
2771 4026 3.345508 GGAATTCCTACAGTTTCCGGT 57.654 47.619 17.73 0.00 0.00 5.28
2774 4029 3.268330 GGACGGAATTCCTACAGTTTCC 58.732 50.000 22.05 11.43 35.36 3.13
2775 4030 3.268330 GGGACGGAATTCCTACAGTTTC 58.732 50.000 22.05 8.81 35.76 2.78
2776 4031 2.640826 TGGGACGGAATTCCTACAGTTT 59.359 45.455 22.05 0.00 35.76 2.66
2777 4032 2.027469 GTGGGACGGAATTCCTACAGTT 60.027 50.000 22.05 0.00 44.58 3.16
2778 4033 1.553704 GTGGGACGGAATTCCTACAGT 59.446 52.381 22.05 12.32 44.58 3.55
2779 4034 1.470979 CGTGGGACGGAATTCCTACAG 60.471 57.143 22.05 9.09 45.28 2.74
2780 4035 0.533491 CGTGGGACGGAATTCCTACA 59.467 55.000 22.05 12.08 45.28 2.74
2781 4036 3.357504 CGTGGGACGGAATTCCTAC 57.642 57.895 22.05 14.63 42.37 3.18
2791 4046 9.211485 AGATATATAAAAATTTACCGTGGGACG 57.789 33.333 0.00 0.00 42.11 4.79
2857 4112 9.403583 TGTAATATACTATAGATCGATGTGCCA 57.596 33.333 0.54 0.00 0.00 4.92
2858 4113 9.666626 GTGTAATATACTATAGATCGATGTGCC 57.333 37.037 0.54 0.00 0.00 5.01
2873 4128 7.709613 CGGGTCTTTTTGCTAGTGTAATATACT 59.290 37.037 0.00 0.00 0.00 2.12
2874 4129 7.493645 ACGGGTCTTTTTGCTAGTGTAATATAC 59.506 37.037 0.00 0.00 0.00 1.47
2875 4130 7.493320 CACGGGTCTTTTTGCTAGTGTAATATA 59.507 37.037 0.00 0.00 0.00 0.86
2876 4131 6.315393 CACGGGTCTTTTTGCTAGTGTAATAT 59.685 38.462 0.00 0.00 0.00 1.28
2877 4132 5.640357 CACGGGTCTTTTTGCTAGTGTAATA 59.360 40.000 0.00 0.00 0.00 0.98
2878 4133 4.454504 CACGGGTCTTTTTGCTAGTGTAAT 59.545 41.667 0.00 0.00 0.00 1.89
2882 4137 1.069227 GCACGGGTCTTTTTGCTAGTG 60.069 52.381 0.00 0.00 32.00 2.74
3268 4524 3.135348 ACACATGATGGGTTCGATCTCAT 59.865 43.478 8.61 8.61 21.35 2.90
3269 4525 2.501316 ACACATGATGGGTTCGATCTCA 59.499 45.455 0.00 0.00 21.35 3.27
3303 4559 7.174253 AGGAAACGAGAATGTAAAAATAGCACA 59.826 33.333 0.00 0.00 0.00 4.57
3317 4573 3.886123 CCCATAACCAGGAAACGAGAAT 58.114 45.455 0.00 0.00 0.00 2.40
3342 4598 0.383231 CCTCGCGTAAGTAATCGGGT 59.617 55.000 5.77 0.00 40.07 5.28
3401 4657 2.982470 CGAGCTTTGATTGAAACCTTGC 59.018 45.455 0.00 0.00 0.00 4.01
3403 4659 4.023707 CAGTCGAGCTTTGATTGAAACCTT 60.024 41.667 6.58 0.00 0.00 3.50
3412 4668 3.516615 GCTCTAACAGTCGAGCTTTGAT 58.483 45.455 14.55 0.00 46.87 2.57
3413 4669 2.947852 GCTCTAACAGTCGAGCTTTGA 58.052 47.619 14.55 0.00 46.87 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.