Multiple sequence alignment - TraesCS2A01G361600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G361600 chr2A 100.000 3079 0 0 1 3079 605397621 605400699 0.000000e+00 5686
1 TraesCS2A01G361600 chr2A 88.177 2123 226 17 970 3079 605129771 605127661 0.000000e+00 2507
2 TraesCS2A01G361600 chr2A 86.933 2051 208 25 879 2897 605188635 605186613 0.000000e+00 2248
3 TraesCS2A01G361600 chr2A 87.172 1029 130 2 2051 3078 605167463 605166436 0.000000e+00 1168
4 TraesCS2A01G361600 chr2A 90.300 866 77 5 999 1859 605171283 605170420 0.000000e+00 1127
5 TraesCS2A01G361600 chr2A 92.523 107 3 3 865 971 605398334 605398435 6.880000e-32 148
6 TraesCS2A01G361600 chr2A 92.523 107 3 3 714 815 605398485 605398591 6.880000e-32 148
7 TraesCS2A01G361600 chr3A 91.034 2119 173 4 970 3079 727397604 727399714 0.000000e+00 2844
8 TraesCS2A01G361600 chr3A 88.366 2123 222 17 970 3079 727469494 727471604 0.000000e+00 2529
9 TraesCS2A01G361600 chr3A 98.491 464 7 0 1 464 154929566 154929103 0.000000e+00 819
10 TraesCS2A01G361600 chr3B 89.250 2121 208 11 970 3079 804130128 804132239 0.000000e+00 2636
11 TraesCS2A01G361600 chr3B 88.371 2124 219 16 970 3079 804237788 804239897 0.000000e+00 2529
12 TraesCS2A01G361600 chr3B 86.580 1237 142 12 1857 3079 804170642 804171868 0.000000e+00 1343
13 TraesCS2A01G361600 chr3B 86.281 1210 138 14 1884 3079 804228282 804229477 0.000000e+00 1290
14 TraesCS2A01G361600 chr3B 93.060 879 61 0 969 1847 804167937 804168815 0.000000e+00 1286
15 TraesCS2A01G361600 chr3B 88.177 406 25 7 466 863 804167570 804167960 2.160000e-126 462
16 TraesCS2A01G361600 chr3B 90.426 94 4 4 881 971 804167821 804167912 5.390000e-23 119
17 TraesCS2A01G361600 chr3D 87.489 1119 127 5 1964 3079 597295785 597296893 0.000000e+00 1279
18 TraesCS2A01G361600 chr3D 86.572 1132 141 7 1950 3079 597409485 597410607 0.000000e+00 1238
19 TraesCS2A01G361600 chr3D 93.408 804 50 1 1031 1831 597294069 597294872 0.000000e+00 1188
20 TraesCS2A01G361600 chr3D 91.442 853 70 2 997 1847 597477644 597478495 0.000000e+00 1168
21 TraesCS2A01G361600 chr1B 98.707 464 6 0 1 464 384310092 384310555 0.000000e+00 824
22 TraesCS2A01G361600 chr1B 98.276 464 8 0 1 464 87992590 87993053 0.000000e+00 813
23 TraesCS2A01G361600 chr7A 98.276 464 8 0 1 464 424303556 424303093 0.000000e+00 813
24 TraesCS2A01G361600 chr7A 98.276 464 8 0 1 464 602754901 602754438 0.000000e+00 813
25 TraesCS2A01G361600 chr6B 98.276 464 8 0 1 464 52652566 52652103 0.000000e+00 813
26 TraesCS2A01G361600 chr6B 98.276 464 8 0 1 464 644828806 644828343 0.000000e+00 813
27 TraesCS2A01G361600 chr4A 98.276 464 8 0 1 464 534567630 534568093 0.000000e+00 813
28 TraesCS2A01G361600 chr4A 98.276 464 8 0 1 464 626086049 626086512 0.000000e+00 813


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G361600 chr2A 605397621 605400699 3078 False 1994.0 5686 95.015333 1 3079 3 chr2A.!!$F1 3078
1 TraesCS2A01G361600 chr2A 605127661 605129771 2110 True 2507.0 2507 88.177000 970 3079 1 chr2A.!!$R1 2109
2 TraesCS2A01G361600 chr2A 605186613 605188635 2022 True 2248.0 2248 86.933000 879 2897 1 chr2A.!!$R2 2018
3 TraesCS2A01G361600 chr2A 605166436 605171283 4847 True 1147.5 1168 88.736000 999 3078 2 chr2A.!!$R3 2079
4 TraesCS2A01G361600 chr3A 727397604 727399714 2110 False 2844.0 2844 91.034000 970 3079 1 chr3A.!!$F1 2109
5 TraesCS2A01G361600 chr3A 727469494 727471604 2110 False 2529.0 2529 88.366000 970 3079 1 chr3A.!!$F2 2109
6 TraesCS2A01G361600 chr3B 804130128 804132239 2111 False 2636.0 2636 89.250000 970 3079 1 chr3B.!!$F1 2109
7 TraesCS2A01G361600 chr3B 804237788 804239897 2109 False 2529.0 2529 88.371000 970 3079 1 chr3B.!!$F3 2109
8 TraesCS2A01G361600 chr3B 804228282 804229477 1195 False 1290.0 1290 86.281000 1884 3079 1 chr3B.!!$F2 1195
9 TraesCS2A01G361600 chr3B 804167570 804171868 4298 False 802.5 1343 89.560750 466 3079 4 chr3B.!!$F4 2613
10 TraesCS2A01G361600 chr3D 597409485 597410607 1122 False 1238.0 1238 86.572000 1950 3079 1 chr3D.!!$F1 1129
11 TraesCS2A01G361600 chr3D 597294069 597296893 2824 False 1233.5 1279 90.448500 1031 3079 2 chr3D.!!$F3 2048
12 TraesCS2A01G361600 chr3D 597477644 597478495 851 False 1168.0 1168 91.442000 997 1847 1 chr3D.!!$F2 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.105964 TCAAGCGTACAAGCAGTGGT 59.894 50.0 0.00 0.0 40.15 4.16 F
97 98 0.179215 GCATGAACACACGTGCTAGC 60.179 55.0 17.22 8.1 45.71 3.42 F
900 909 0.315251 GGCTGTTGAAGTTTCTGCCC 59.685 55.0 10.89 0.0 33.45 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 1535 0.040499 GTTGGGCCCTCCATACCAAA 59.960 55.0 25.70 1.57 46.52 3.28 R
1703 1751 0.626382 TTGTCCACACCCAAGTTGGA 59.374 50.0 24.06 0.00 40.96 3.53 R
2109 5181 0.665835 GTGACCGAAACAACATGCCA 59.334 50.0 0.00 0.00 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 7.763172 TGTAATTATTTAATTTTGCAGGCCG 57.237 32.000 0.00 0.00 37.16 6.13
38 39 7.324178 TGTAATTATTTAATTTTGCAGGCCGT 58.676 30.769 0.00 0.00 37.16 5.68
39 40 8.467598 TGTAATTATTTAATTTTGCAGGCCGTA 58.532 29.630 0.00 0.00 37.16 4.02
40 41 7.764695 AATTATTTAATTTTGCAGGCCGTAC 57.235 32.000 0.00 0.00 32.28 3.67
41 42 2.904011 TTAATTTTGCAGGCCGTACG 57.096 45.000 8.69 8.69 0.00 3.67
42 43 2.096220 TAATTTTGCAGGCCGTACGA 57.904 45.000 18.76 0.00 0.00 3.43
43 44 1.459450 AATTTTGCAGGCCGTACGAT 58.541 45.000 18.76 0.00 0.00 3.73
44 45 0.732571 ATTTTGCAGGCCGTACGATG 59.267 50.000 18.76 13.29 0.00 3.84
45 46 1.302383 TTTTGCAGGCCGTACGATGG 61.302 55.000 18.76 0.48 0.00 3.51
46 47 2.173758 TTTGCAGGCCGTACGATGGA 62.174 55.000 18.76 10.85 0.00 3.41
47 48 2.173758 TTGCAGGCCGTACGATGGAA 62.174 55.000 18.76 16.09 0.00 3.53
48 49 1.883084 GCAGGCCGTACGATGGAAG 60.883 63.158 18.76 0.00 0.00 3.46
49 50 1.515954 CAGGCCGTACGATGGAAGT 59.484 57.895 18.76 0.00 0.00 3.01
50 51 0.742505 CAGGCCGTACGATGGAAGTA 59.257 55.000 18.76 0.00 0.00 2.24
51 52 0.743097 AGGCCGTACGATGGAAGTAC 59.257 55.000 18.76 0.00 40.59 2.73
52 53 0.457035 GGCCGTACGATGGAAGTACA 59.543 55.000 18.76 0.00 43.24 2.90
53 54 1.535437 GGCCGTACGATGGAAGTACAG 60.535 57.143 18.76 0.00 43.24 2.74
54 55 1.402968 GCCGTACGATGGAAGTACAGA 59.597 52.381 18.76 0.00 43.24 3.41
55 56 2.034305 GCCGTACGATGGAAGTACAGAT 59.966 50.000 18.76 0.00 43.24 2.90
56 57 3.852572 GCCGTACGATGGAAGTACAGATC 60.853 52.174 18.76 0.00 43.24 2.75
57 58 3.314357 CCGTACGATGGAAGTACAGATCA 59.686 47.826 18.76 0.00 43.24 2.92
58 59 4.201980 CCGTACGATGGAAGTACAGATCAA 60.202 45.833 18.76 0.00 43.24 2.57
59 60 4.970611 CGTACGATGGAAGTACAGATCAAG 59.029 45.833 10.44 0.00 43.24 3.02
60 61 3.786635 ACGATGGAAGTACAGATCAAGC 58.213 45.455 0.00 0.00 0.00 4.01
61 62 2.791560 CGATGGAAGTACAGATCAAGCG 59.208 50.000 0.00 0.00 0.00 4.68
62 63 3.735208 CGATGGAAGTACAGATCAAGCGT 60.735 47.826 0.00 0.00 0.00 5.07
63 64 4.497507 CGATGGAAGTACAGATCAAGCGTA 60.498 45.833 0.00 0.00 0.00 4.42
64 65 4.106029 TGGAAGTACAGATCAAGCGTAC 57.894 45.455 0.00 1.30 36.57 3.67
65 66 3.508402 TGGAAGTACAGATCAAGCGTACA 59.492 43.478 13.69 0.00 38.35 2.90
66 67 4.021807 TGGAAGTACAGATCAAGCGTACAA 60.022 41.667 13.69 0.01 38.35 2.41
67 68 4.563184 GGAAGTACAGATCAAGCGTACAAG 59.437 45.833 13.69 0.00 38.35 3.16
68 69 3.512680 AGTACAGATCAAGCGTACAAGC 58.487 45.455 13.69 0.00 38.35 4.01
69 70 2.455674 ACAGATCAAGCGTACAAGCA 57.544 45.000 0.00 0.00 40.15 3.91
70 71 2.341257 ACAGATCAAGCGTACAAGCAG 58.659 47.619 0.00 0.00 40.15 4.24
71 72 2.289072 ACAGATCAAGCGTACAAGCAGT 60.289 45.455 0.00 0.00 40.15 4.40
72 73 2.093310 CAGATCAAGCGTACAAGCAGTG 59.907 50.000 0.00 0.00 40.15 3.66
73 74 1.394917 GATCAAGCGTACAAGCAGTGG 59.605 52.381 0.00 0.00 40.15 4.00
74 75 0.105964 TCAAGCGTACAAGCAGTGGT 59.894 50.000 0.00 0.00 40.15 4.16
75 76 1.341852 TCAAGCGTACAAGCAGTGGTA 59.658 47.619 0.00 0.00 40.15 3.25
76 77 1.459592 CAAGCGTACAAGCAGTGGTAC 59.540 52.381 0.00 0.00 40.15 3.34
77 78 0.966920 AGCGTACAAGCAGTGGTACT 59.033 50.000 0.00 0.00 38.14 2.73
88 89 2.493035 CAGTGGTACTGCATGAACACA 58.507 47.619 16.13 0.00 39.62 3.72
89 90 2.224079 CAGTGGTACTGCATGAACACAC 59.776 50.000 16.13 8.17 39.62 3.82
90 91 1.194547 GTGGTACTGCATGAACACACG 59.805 52.381 10.48 0.00 0.00 4.49
91 92 1.202592 TGGTACTGCATGAACACACGT 60.203 47.619 0.00 0.00 0.00 4.49
92 93 1.194547 GGTACTGCATGAACACACGTG 59.805 52.381 15.48 15.48 0.00 4.49
96 97 3.955429 GCATGAACACACGTGCTAG 57.045 52.632 17.22 8.64 45.71 3.42
97 98 0.179215 GCATGAACACACGTGCTAGC 60.179 55.000 17.22 8.10 45.71 3.42
98 99 0.443869 CATGAACACACGTGCTAGCC 59.556 55.000 17.22 2.49 0.00 3.93
99 100 0.321671 ATGAACACACGTGCTAGCCT 59.678 50.000 17.22 0.00 0.00 4.58
100 101 0.599991 TGAACACACGTGCTAGCCTG 60.600 55.000 17.22 7.81 0.00 4.85
101 102 1.291877 GAACACACGTGCTAGCCTGG 61.292 60.000 17.22 3.64 0.00 4.45
102 103 3.121030 CACACGTGCTAGCCTGGC 61.121 66.667 17.22 11.65 0.00 4.85
103 104 4.394712 ACACGTGCTAGCCTGGCC 62.395 66.667 17.22 0.00 0.00 5.36
104 105 4.393155 CACGTGCTAGCCTGGCCA 62.393 66.667 16.57 4.71 0.00 5.36
105 106 4.087892 ACGTGCTAGCCTGGCCAG 62.088 66.667 26.87 26.87 0.00 4.85
106 107 4.087892 CGTGCTAGCCTGGCCAGT 62.088 66.667 30.63 16.39 0.00 4.00
107 108 2.124942 GTGCTAGCCTGGCCAGTC 60.125 66.667 30.63 20.00 0.00 3.51
108 109 2.607442 TGCTAGCCTGGCCAGTCA 60.607 61.111 30.63 16.54 0.00 3.41
109 110 2.188994 GCTAGCCTGGCCAGTCAG 59.811 66.667 30.63 22.98 34.70 3.51
110 111 2.188994 CTAGCCTGGCCAGTCAGC 59.811 66.667 30.63 25.50 33.64 4.26
118 119 4.972875 GCCAGTCAGCCAGCTAAT 57.027 55.556 0.00 0.00 0.00 1.73
120 121 2.557920 GCCAGTCAGCCAGCTAATAT 57.442 50.000 0.00 0.00 0.00 1.28
121 122 3.685139 GCCAGTCAGCCAGCTAATATA 57.315 47.619 0.00 0.00 0.00 0.86
122 123 3.330267 GCCAGTCAGCCAGCTAATATAC 58.670 50.000 0.00 0.00 0.00 1.47
123 124 3.866449 GCCAGTCAGCCAGCTAATATACC 60.866 52.174 0.00 0.00 0.00 2.73
124 125 3.324846 CCAGTCAGCCAGCTAATATACCA 59.675 47.826 0.00 0.00 0.00 3.25
125 126 4.202357 CCAGTCAGCCAGCTAATATACCAA 60.202 45.833 0.00 0.00 0.00 3.67
126 127 4.752101 CAGTCAGCCAGCTAATATACCAAC 59.248 45.833 0.00 0.00 0.00 3.77
127 128 4.408921 AGTCAGCCAGCTAATATACCAACA 59.591 41.667 0.00 0.00 0.00 3.33
128 129 4.511826 GTCAGCCAGCTAATATACCAACAC 59.488 45.833 0.00 0.00 0.00 3.32
129 130 4.163268 TCAGCCAGCTAATATACCAACACA 59.837 41.667 0.00 0.00 0.00 3.72
130 131 5.065914 CAGCCAGCTAATATACCAACACAT 58.934 41.667 0.00 0.00 0.00 3.21
131 132 5.180117 CAGCCAGCTAATATACCAACACATC 59.820 44.000 0.00 0.00 0.00 3.06
132 133 5.072329 AGCCAGCTAATATACCAACACATCT 59.928 40.000 0.00 0.00 0.00 2.90
133 134 5.409826 GCCAGCTAATATACCAACACATCTC 59.590 44.000 0.00 0.00 0.00 2.75
134 135 6.524734 CCAGCTAATATACCAACACATCTCA 58.475 40.000 0.00 0.00 0.00 3.27
135 136 6.425114 CCAGCTAATATACCAACACATCTCAC 59.575 42.308 0.00 0.00 0.00 3.51
136 137 6.986231 CAGCTAATATACCAACACATCTCACA 59.014 38.462 0.00 0.00 0.00 3.58
137 138 6.986817 AGCTAATATACCAACACATCTCACAC 59.013 38.462 0.00 0.00 0.00 3.82
138 139 6.761242 GCTAATATACCAACACATCTCACACA 59.239 38.462 0.00 0.00 0.00 3.72
139 140 7.279981 GCTAATATACCAACACATCTCACACAA 59.720 37.037 0.00 0.00 0.00 3.33
140 141 7.615582 AATATACCAACACATCTCACACAAG 57.384 36.000 0.00 0.00 0.00 3.16
141 142 3.558931 ACCAACACATCTCACACAAGA 57.441 42.857 0.00 0.00 0.00 3.02
142 143 3.470709 ACCAACACATCTCACACAAGAG 58.529 45.455 0.00 0.00 36.97 2.85
143 144 2.810274 CCAACACATCTCACACAAGAGG 59.190 50.000 0.00 0.00 36.30 3.69
144 145 3.494924 CCAACACATCTCACACAAGAGGA 60.495 47.826 0.00 0.00 36.30 3.71
145 146 3.674528 ACACATCTCACACAAGAGGAG 57.325 47.619 0.00 0.00 36.30 3.69
146 147 2.289320 ACACATCTCACACAAGAGGAGC 60.289 50.000 0.00 0.00 36.30 4.70
147 148 1.973515 ACATCTCACACAAGAGGAGCA 59.026 47.619 0.00 0.00 36.30 4.26
148 149 2.028294 ACATCTCACACAAGAGGAGCAG 60.028 50.000 0.00 0.00 36.30 4.24
149 150 0.972134 TCTCACACAAGAGGAGCAGG 59.028 55.000 0.00 0.00 36.30 4.85
150 151 0.673022 CTCACACAAGAGGAGCAGGC 60.673 60.000 0.00 0.00 31.94 4.85
151 152 2.031516 CACACAAGAGGAGCAGGCG 61.032 63.158 0.00 0.00 0.00 5.52
152 153 3.123620 CACAAGAGGAGCAGGCGC 61.124 66.667 0.00 0.00 38.99 6.53
153 154 4.749310 ACAAGAGGAGCAGGCGCG 62.749 66.667 0.00 0.00 45.49 6.86
160 161 4.521062 GAGCAGGCGCGGAGACAT 62.521 66.667 8.83 0.00 45.49 3.06
161 162 4.827087 AGCAGGCGCGGAGACATG 62.827 66.667 8.83 0.00 45.49 3.21
163 164 2.434884 CAGGCGCGGAGACATGTT 60.435 61.111 8.83 0.00 0.00 2.71
164 165 2.434884 AGGCGCGGAGACATGTTG 60.435 61.111 8.83 0.00 0.00 3.33
165 166 2.434185 GGCGCGGAGACATGTTGA 60.434 61.111 8.83 0.00 0.00 3.18
166 167 2.456119 GGCGCGGAGACATGTTGAG 61.456 63.158 8.83 0.00 0.00 3.02
167 168 3.084579 CGCGGAGACATGTTGAGC 58.915 61.111 0.00 3.15 0.00 4.26
168 169 1.446792 CGCGGAGACATGTTGAGCT 60.447 57.895 0.00 0.00 0.00 4.09
169 170 1.690283 CGCGGAGACATGTTGAGCTG 61.690 60.000 0.00 0.00 0.00 4.24
170 171 1.975363 GCGGAGACATGTTGAGCTGC 61.975 60.000 0.00 3.11 0.00 5.25
171 172 0.671472 CGGAGACATGTTGAGCTGCA 60.671 55.000 0.00 0.00 0.00 4.41
172 173 1.747709 GGAGACATGTTGAGCTGCAT 58.252 50.000 0.00 0.00 0.00 3.96
173 174 1.400846 GGAGACATGTTGAGCTGCATG 59.599 52.381 16.40 16.40 45.61 4.06
174 175 0.809385 AGACATGTTGAGCTGCATGC 59.191 50.000 11.82 11.82 44.43 4.06
175 176 0.524414 GACATGTTGAGCTGCATGCA 59.476 50.000 21.29 21.29 44.43 3.96
176 177 0.526211 ACATGTTGAGCTGCATGCAG 59.474 50.000 37.81 37.81 44.43 4.41
187 188 2.477825 CTGCATGCAGCTTACTATCGT 58.522 47.619 33.18 0.00 45.94 3.73
188 189 2.204237 TGCATGCAGCTTACTATCGTG 58.796 47.619 18.46 0.00 45.94 4.35
189 190 2.159114 TGCATGCAGCTTACTATCGTGA 60.159 45.455 18.46 0.00 45.94 4.35
190 191 2.219674 GCATGCAGCTTACTATCGTGAC 59.780 50.000 14.21 0.00 41.15 3.67
191 192 2.579207 TGCAGCTTACTATCGTGACC 57.421 50.000 0.00 0.00 0.00 4.02
192 193 1.822371 TGCAGCTTACTATCGTGACCA 59.178 47.619 0.00 0.00 0.00 4.02
193 194 2.194271 GCAGCTTACTATCGTGACCAC 58.806 52.381 0.00 0.00 0.00 4.16
194 195 2.810650 CAGCTTACTATCGTGACCACC 58.189 52.381 0.00 0.00 0.00 4.61
195 196 2.427453 CAGCTTACTATCGTGACCACCT 59.573 50.000 0.00 0.00 0.00 4.00
196 197 2.427453 AGCTTACTATCGTGACCACCTG 59.573 50.000 0.00 0.00 0.00 4.00
197 198 2.481449 GCTTACTATCGTGACCACCTGG 60.481 54.545 0.00 0.00 42.17 4.45
212 213 4.906618 CCACCTGGTAATCACTTGTAACT 58.093 43.478 0.00 0.00 0.00 2.24
213 214 5.313712 CCACCTGGTAATCACTTGTAACTT 58.686 41.667 0.00 0.00 0.00 2.66
214 215 5.768164 CCACCTGGTAATCACTTGTAACTTT 59.232 40.000 0.00 0.00 0.00 2.66
215 216 6.264518 CCACCTGGTAATCACTTGTAACTTTT 59.735 38.462 0.00 0.00 0.00 2.27
216 217 7.201875 CCACCTGGTAATCACTTGTAACTTTTT 60.202 37.037 0.00 0.00 0.00 1.94
243 244 8.771521 AGGTCCATCATTTCATAATCATTTGA 57.228 30.769 0.00 0.00 0.00 2.69
244 245 9.204337 AGGTCCATCATTTCATAATCATTTGAA 57.796 29.630 0.00 0.00 0.00 2.69
245 246 9.252962 GGTCCATCATTTCATAATCATTTGAAC 57.747 33.333 0.00 0.00 31.87 3.18
280 281 8.537049 TCCAAATATTGTTCAGCTTGAAAATG 57.463 30.769 0.00 0.00 38.22 2.32
281 282 8.149647 TCCAAATATTGTTCAGCTTGAAAATGT 58.850 29.630 0.00 0.00 38.22 2.71
282 283 8.437742 CCAAATATTGTTCAGCTTGAAAATGTC 58.562 33.333 0.00 0.00 38.22 3.06
283 284 8.980610 CAAATATTGTTCAGCTTGAAAATGTCA 58.019 29.630 0.00 0.00 38.22 3.58
284 285 9.545105 AAATATTGTTCAGCTTGAAAATGTCAA 57.455 25.926 0.00 0.00 44.20 3.18
285 286 6.833342 ATTGTTCAGCTTGAAAATGTCAAC 57.167 33.333 0.00 0.00 41.47 3.18
286 287 4.350346 TGTTCAGCTTGAAAATGTCAACG 58.650 39.130 0.00 0.00 41.47 4.10
287 288 4.095632 TGTTCAGCTTGAAAATGTCAACGA 59.904 37.500 0.00 0.00 41.47 3.85
288 289 4.891627 TCAGCTTGAAAATGTCAACGAA 57.108 36.364 0.00 0.00 41.47 3.85
289 290 4.847633 TCAGCTTGAAAATGTCAACGAAG 58.152 39.130 0.00 0.00 41.47 3.79
290 291 5.163663 TTCAGCTTGAAAATGTCAACGAAGT 60.164 36.000 0.00 0.00 41.47 3.01
291 292 5.525745 TCAGCTTGAAAATGTCAACGAAGTA 59.474 36.000 0.00 0.00 45.00 2.24
292 293 6.204688 TCAGCTTGAAAATGTCAACGAAGTAT 59.795 34.615 0.00 0.00 45.00 2.12
293 294 6.303970 CAGCTTGAAAATGTCAACGAAGTATG 59.696 38.462 0.00 0.00 45.00 2.39
294 295 5.569059 GCTTGAAAATGTCAACGAAGTATGG 59.431 40.000 0.00 0.00 45.00 2.74
295 296 5.041951 TGAAAATGTCAACGAAGTATGGC 57.958 39.130 0.00 0.00 45.00 4.40
296 297 4.517075 TGAAAATGTCAACGAAGTATGGCA 59.483 37.500 0.00 0.00 45.00 4.92
297 298 4.685169 AAATGTCAACGAAGTATGGCAG 57.315 40.909 0.00 0.00 45.00 4.85
298 299 3.610040 ATGTCAACGAAGTATGGCAGA 57.390 42.857 0.00 0.00 45.00 4.26
299 300 3.610040 TGTCAACGAAGTATGGCAGAT 57.390 42.857 0.00 0.00 45.00 2.90
300 301 3.261580 TGTCAACGAAGTATGGCAGATG 58.738 45.455 0.00 0.00 45.00 2.90
301 302 2.609459 GTCAACGAAGTATGGCAGATGG 59.391 50.000 0.00 0.00 45.00 3.51
302 303 1.331756 CAACGAAGTATGGCAGATGGC 59.668 52.381 0.00 0.00 45.00 4.40
303 304 0.833287 ACGAAGTATGGCAGATGGCT 59.167 50.000 7.95 0.00 41.94 4.75
304 305 2.039418 ACGAAGTATGGCAGATGGCTA 58.961 47.619 7.95 0.00 41.94 3.93
305 306 2.224066 ACGAAGTATGGCAGATGGCTAC 60.224 50.000 7.95 7.66 41.94 3.58
306 307 2.224042 CGAAGTATGGCAGATGGCTACA 60.224 50.000 7.95 0.00 44.01 2.74
307 308 3.397482 GAAGTATGGCAGATGGCTACAG 58.603 50.000 7.95 0.00 44.01 2.74
308 309 2.682594 AGTATGGCAGATGGCTACAGA 58.317 47.619 7.95 0.00 44.01 3.41
309 310 3.246301 AGTATGGCAGATGGCTACAGAT 58.754 45.455 7.95 0.00 44.01 2.90
310 311 4.420206 AGTATGGCAGATGGCTACAGATA 58.580 43.478 7.95 0.00 44.01 1.98
311 312 3.977134 ATGGCAGATGGCTACAGATAG 57.023 47.619 7.95 0.00 44.01 2.08
320 321 2.832931 CTACAGATAGCATGCCGGC 58.167 57.895 22.73 22.73 0.00 6.13
321 322 0.671781 CTACAGATAGCATGCCGGCC 60.672 60.000 26.77 8.84 0.00 6.13
322 323 2.111999 TACAGATAGCATGCCGGCCC 62.112 60.000 26.77 12.64 0.00 5.80
323 324 3.170672 AGATAGCATGCCGGCCCA 61.171 61.111 26.77 6.41 0.00 5.36
324 325 2.670934 GATAGCATGCCGGCCCAG 60.671 66.667 26.77 14.98 0.00 4.45
325 326 4.275508 ATAGCATGCCGGCCCAGG 62.276 66.667 26.77 9.39 0.00 4.45
337 338 3.569210 CCCAGGGCCCATATCGCA 61.569 66.667 27.56 0.00 0.00 5.10
338 339 2.515398 CCAGGGCCCATATCGCAA 59.485 61.111 27.56 0.00 0.00 4.85
339 340 1.601759 CCAGGGCCCATATCGCAAG 60.602 63.158 27.56 1.34 0.00 4.01
353 354 3.126001 TCGCAAGACATTCCAGAAACT 57.874 42.857 0.00 0.00 45.01 2.66
354 355 3.476552 TCGCAAGACATTCCAGAAACTT 58.523 40.909 0.00 0.00 45.01 2.66
355 356 3.882888 TCGCAAGACATTCCAGAAACTTT 59.117 39.130 0.00 0.00 45.01 2.66
356 357 4.338118 TCGCAAGACATTCCAGAAACTTTT 59.662 37.500 0.00 0.00 45.01 2.27
357 358 4.442073 CGCAAGACATTCCAGAAACTTTTG 59.558 41.667 0.00 0.00 43.02 2.44
358 359 4.209911 GCAAGACATTCCAGAAACTTTTGC 59.790 41.667 7.05 7.05 0.00 3.68
359 360 5.350633 CAAGACATTCCAGAAACTTTTGCA 58.649 37.500 0.00 0.00 0.00 4.08
360 361 5.596836 AGACATTCCAGAAACTTTTGCAA 57.403 34.783 0.00 0.00 0.00 4.08
361 362 5.351458 AGACATTCCAGAAACTTTTGCAAC 58.649 37.500 0.00 0.00 0.00 4.17
362 363 5.083533 ACATTCCAGAAACTTTTGCAACA 57.916 34.783 0.00 0.00 0.00 3.33
363 364 5.486526 ACATTCCAGAAACTTTTGCAACAA 58.513 33.333 0.00 0.00 0.00 2.83
364 365 6.114767 ACATTCCAGAAACTTTTGCAACAAT 58.885 32.000 0.00 0.00 0.00 2.71
365 366 6.598850 ACATTCCAGAAACTTTTGCAACAATT 59.401 30.769 0.00 0.00 0.00 2.32
366 367 6.660887 TTCCAGAAACTTTTGCAACAATTC 57.339 33.333 0.00 1.98 0.00 2.17
367 368 5.728471 TCCAGAAACTTTTGCAACAATTCA 58.272 33.333 0.00 0.00 0.00 2.57
368 369 6.347696 TCCAGAAACTTTTGCAACAATTCAT 58.652 32.000 0.00 0.00 0.00 2.57
369 370 6.258287 TCCAGAAACTTTTGCAACAATTCATG 59.742 34.615 0.00 3.16 0.00 3.07
370 371 6.423862 CAGAAACTTTTGCAACAATTCATGG 58.576 36.000 0.00 0.00 0.00 3.66
371 372 4.816786 AACTTTTGCAACAATTCATGGC 57.183 36.364 0.00 0.00 0.00 4.40
372 373 3.806380 ACTTTTGCAACAATTCATGGCA 58.194 36.364 0.00 0.00 0.00 4.92
373 374 4.197750 ACTTTTGCAACAATTCATGGCAA 58.802 34.783 0.00 0.00 42.15 4.52
375 376 4.815040 TTTGCAACAATTCATGGCAAAG 57.185 36.364 0.00 0.00 46.06 2.77
376 377 3.747854 TGCAACAATTCATGGCAAAGA 57.252 38.095 0.00 0.00 0.00 2.52
377 378 4.069300 TGCAACAATTCATGGCAAAGAA 57.931 36.364 7.98 7.98 0.00 2.52
378 379 4.059511 TGCAACAATTCATGGCAAAGAAG 58.940 39.130 10.75 2.55 0.00 2.85
379 380 4.060205 GCAACAATTCATGGCAAAGAAGT 58.940 39.130 10.75 6.13 0.00 3.01
380 381 4.512571 GCAACAATTCATGGCAAAGAAGTT 59.487 37.500 10.75 7.87 0.00 2.66
381 382 5.333568 GCAACAATTCATGGCAAAGAAGTTC 60.334 40.000 10.75 0.00 0.00 3.01
382 383 5.534207 ACAATTCATGGCAAAGAAGTTCA 57.466 34.783 5.50 0.00 0.00 3.18
383 384 5.535333 ACAATTCATGGCAAAGAAGTTCAG 58.465 37.500 5.50 0.00 0.00 3.02
384 385 5.302568 ACAATTCATGGCAAAGAAGTTCAGA 59.697 36.000 5.50 0.00 0.00 3.27
385 386 6.014840 ACAATTCATGGCAAAGAAGTTCAGAT 60.015 34.615 5.50 0.00 0.00 2.90
386 387 5.381174 TTCATGGCAAAGAAGTTCAGATG 57.619 39.130 5.50 2.18 0.00 2.90
387 388 3.192001 TCATGGCAAAGAAGTTCAGATGC 59.808 43.478 15.27 15.27 0.00 3.91
388 389 1.536766 TGGCAAAGAAGTTCAGATGCG 59.463 47.619 16.39 0.00 34.73 4.73
389 390 1.135575 GGCAAAGAAGTTCAGATGCGG 60.136 52.381 16.39 0.00 34.73 5.69
390 391 1.537202 GCAAAGAAGTTCAGATGCGGT 59.463 47.619 5.50 0.00 0.00 5.68
391 392 2.742053 GCAAAGAAGTTCAGATGCGGTA 59.258 45.455 5.50 0.00 0.00 4.02
392 393 3.181516 GCAAAGAAGTTCAGATGCGGTAG 60.182 47.826 5.50 0.00 0.00 3.18
393 394 4.245660 CAAAGAAGTTCAGATGCGGTAGA 58.754 43.478 5.50 0.00 0.00 2.59
394 395 3.791973 AGAAGTTCAGATGCGGTAGAG 57.208 47.619 5.50 0.00 0.00 2.43
395 396 2.428890 AGAAGTTCAGATGCGGTAGAGG 59.571 50.000 5.50 0.00 0.00 3.69
396 397 0.461961 AGTTCAGATGCGGTAGAGGC 59.538 55.000 0.00 0.00 0.00 4.70
397 398 0.872021 GTTCAGATGCGGTAGAGGCG 60.872 60.000 0.00 0.00 0.00 5.52
398 399 1.035385 TTCAGATGCGGTAGAGGCGA 61.035 55.000 0.00 0.00 0.00 5.54
399 400 1.299468 CAGATGCGGTAGAGGCGAC 60.299 63.158 0.00 0.00 0.00 5.19
400 401 2.353607 GATGCGGTAGAGGCGACG 60.354 66.667 0.00 0.00 0.00 5.12
401 402 2.827190 ATGCGGTAGAGGCGACGA 60.827 61.111 0.00 0.00 0.00 4.20
402 403 2.985486 GATGCGGTAGAGGCGACGAC 62.985 65.000 0.00 0.00 0.00 4.34
403 404 4.883300 GCGGTAGAGGCGACGACG 62.883 72.222 2.12 2.12 42.93 5.12
404 405 3.494336 CGGTAGAGGCGACGACGT 61.494 66.667 9.33 0.00 41.98 4.34
405 406 2.873288 GGTAGAGGCGACGACGTT 59.127 61.111 9.33 0.00 41.98 3.99
406 407 1.513586 GGTAGAGGCGACGACGTTG 60.514 63.158 11.03 11.03 41.98 4.10
407 408 2.150837 GTAGAGGCGACGACGTTGC 61.151 63.158 28.41 28.41 41.81 4.17
412 413 4.059459 GCGACGACGTTGCCACTG 62.059 66.667 26.56 1.71 41.98 3.66
413 414 3.403057 CGACGACGTTGCCACTGG 61.403 66.667 0.13 0.00 34.56 4.00
414 415 2.028484 GACGACGTTGCCACTGGA 59.972 61.111 0.13 0.00 0.00 3.86
415 416 2.022129 GACGACGTTGCCACTGGAG 61.022 63.158 0.13 0.00 0.00 3.86
416 417 3.414700 CGACGTTGCCACTGGAGC 61.415 66.667 0.00 0.00 0.00 4.70
417 418 2.280797 GACGTTGCCACTGGAGCA 60.281 61.111 0.00 0.00 38.81 4.26
418 419 1.672356 GACGTTGCCACTGGAGCAT 60.672 57.895 0.00 0.00 40.59 3.79
419 420 0.391130 GACGTTGCCACTGGAGCATA 60.391 55.000 0.00 0.00 40.59 3.14
420 421 0.673644 ACGTTGCCACTGGAGCATAC 60.674 55.000 0.00 0.00 40.59 2.39
421 422 0.673333 CGTTGCCACTGGAGCATACA 60.673 55.000 0.00 0.00 40.59 2.29
422 423 1.755179 GTTGCCACTGGAGCATACAT 58.245 50.000 0.00 0.00 40.59 2.29
423 424 1.402968 GTTGCCACTGGAGCATACATG 59.597 52.381 0.00 0.00 40.59 3.21
440 441 4.874977 GCCGGTAGCGAGGTCAGC 62.875 72.222 17.33 5.51 0.00 4.26
441 442 4.208686 CCGGTAGCGAGGTCAGCC 62.209 72.222 17.33 0.00 34.64 4.85
442 443 3.449227 CGGTAGCGAGGTCAGCCA 61.449 66.667 9.07 0.00 37.19 4.75
443 444 2.496817 GGTAGCGAGGTCAGCCAG 59.503 66.667 0.00 0.00 37.19 4.85
444 445 2.052690 GGTAGCGAGGTCAGCCAGA 61.053 63.158 0.00 0.00 37.19 3.86
445 446 1.139947 GTAGCGAGGTCAGCCAGAC 59.860 63.158 0.00 0.00 46.83 3.51
452 453 2.433318 GTCAGCCAGACCGAGTGC 60.433 66.667 0.00 0.00 41.56 4.40
453 454 4.056125 TCAGCCAGACCGAGTGCG 62.056 66.667 0.00 0.00 37.24 5.34
470 471 1.950130 CGGCACCGTCGTGTTACAA 60.950 57.895 0.00 0.00 42.39 2.41
473 474 2.067766 GGCACCGTCGTGTTACAATTA 58.932 47.619 0.00 0.00 42.39 1.40
500 501 8.798859 ATAATTTGCTTGTCTTCAGATGTAGT 57.201 30.769 0.00 0.00 0.00 2.73
501 502 5.929697 TTTGCTTGTCTTCAGATGTAGTG 57.070 39.130 0.00 0.00 0.00 2.74
502 503 4.607293 TGCTTGTCTTCAGATGTAGTGT 57.393 40.909 0.00 0.00 0.00 3.55
503 504 4.960938 TGCTTGTCTTCAGATGTAGTGTT 58.039 39.130 0.00 0.00 0.00 3.32
559 560 6.597562 ACTATAATTTCACCGGCTTTGGATA 58.402 36.000 0.00 0.00 0.00 2.59
706 711 2.095263 ACGCCTGAAATCGTTGGAAATG 60.095 45.455 0.00 0.00 35.09 2.32
710 715 4.560513 GCCTGAAATCGTTGGAAATGGAAA 60.561 41.667 0.00 0.00 32.44 3.13
712 717 5.278957 CCTGAAATCGTTGGAAATGGAAACT 60.279 40.000 0.00 0.00 32.44 2.66
716 721 3.827722 TCGTTGGAAATGGAAACTCCTT 58.172 40.909 0.00 0.00 37.46 3.36
717 722 3.568007 TCGTTGGAAATGGAAACTCCTTG 59.432 43.478 0.00 0.00 37.46 3.61
718 723 3.317993 CGTTGGAAATGGAAACTCCTTGT 59.682 43.478 0.00 0.00 37.46 3.16
719 724 4.202111 CGTTGGAAATGGAAACTCCTTGTT 60.202 41.667 0.00 0.00 41.29 2.83
720 725 5.009210 CGTTGGAAATGGAAACTCCTTGTTA 59.991 40.000 0.00 0.00 38.03 2.41
721 726 6.294508 CGTTGGAAATGGAAACTCCTTGTTAT 60.295 38.462 0.00 0.00 38.03 1.89
722 727 7.094549 CGTTGGAAATGGAAACTCCTTGTTATA 60.095 37.037 0.00 0.00 38.03 0.98
723 728 7.938140 TGGAAATGGAAACTCCTTGTTATAG 57.062 36.000 0.00 0.00 38.03 1.31
724 729 6.889722 TGGAAATGGAAACTCCTTGTTATAGG 59.110 38.462 0.00 0.00 38.03 2.57
725 730 7.116736 GGAAATGGAAACTCCTTGTTATAGGA 58.883 38.462 0.00 0.00 42.02 2.94
729 734 7.451731 TGGAAACTCCTTGTTATAGGATGAT 57.548 36.000 0.00 0.00 43.24 2.45
743 748 9.994432 GTTATAGGATGATTGTTGAAGTTTCTG 57.006 33.333 0.00 0.00 0.00 3.02
744 749 5.382618 AGGATGATTGTTGAAGTTTCTGC 57.617 39.130 0.00 0.00 0.00 4.26
748 753 1.408969 TTGTTGAAGTTTCTGCCCCC 58.591 50.000 0.00 0.00 0.00 5.40
764 769 0.972471 CCCCATCTGTTTCTTGGCCC 60.972 60.000 0.00 0.00 0.00 5.80
769 774 3.071457 CCATCTGTTTCTTGGCCCTTTTT 59.929 43.478 0.00 0.00 0.00 1.94
773 778 5.393866 TCTGTTTCTTGGCCCTTTTTCTAT 58.606 37.500 0.00 0.00 0.00 1.98
778 783 8.147704 TGTTTCTTGGCCCTTTTTCTATAAAAG 58.852 33.333 0.00 0.00 36.02 2.27
839 848 6.146837 GGTTCATCACAAGCACATATAGCTAG 59.853 42.308 0.00 0.00 42.53 3.42
840 849 6.655078 TCATCACAAGCACATATAGCTAGA 57.345 37.500 0.00 0.00 42.53 2.43
841 850 6.685657 TCATCACAAGCACATATAGCTAGAG 58.314 40.000 0.00 0.00 42.53 2.43
842 851 6.491403 TCATCACAAGCACATATAGCTAGAGA 59.509 38.462 0.00 2.45 42.53 3.10
843 852 6.324561 TCACAAGCACATATAGCTAGAGAG 57.675 41.667 0.00 0.00 42.53 3.20
855 864 3.658757 GCTAGAGAGCCAAGATCGATT 57.341 47.619 0.00 0.00 43.49 3.34
856 865 3.574614 GCTAGAGAGCCAAGATCGATTC 58.425 50.000 0.00 0.00 43.49 2.52
857 866 3.255642 GCTAGAGAGCCAAGATCGATTCT 59.744 47.826 0.00 0.00 43.49 2.40
858 867 4.261994 GCTAGAGAGCCAAGATCGATTCTT 60.262 45.833 0.00 1.78 43.49 2.52
866 875 2.182516 AGATCGATTCTTGTCCCCCT 57.817 50.000 0.00 0.00 0.00 4.79
867 876 2.482494 AGATCGATTCTTGTCCCCCTT 58.518 47.619 0.00 0.00 0.00 3.95
868 877 2.171448 AGATCGATTCTTGTCCCCCTTG 59.829 50.000 0.00 0.00 0.00 3.61
869 878 1.358152 TCGATTCTTGTCCCCCTTGT 58.642 50.000 0.00 0.00 0.00 3.16
870 879 1.702957 TCGATTCTTGTCCCCCTTGTT 59.297 47.619 0.00 0.00 0.00 2.83
871 880 2.907696 TCGATTCTTGTCCCCCTTGTTA 59.092 45.455 0.00 0.00 0.00 2.41
872 881 3.521937 TCGATTCTTGTCCCCCTTGTTAT 59.478 43.478 0.00 0.00 0.00 1.89
873 882 4.717778 TCGATTCTTGTCCCCCTTGTTATA 59.282 41.667 0.00 0.00 0.00 0.98
874 883 5.057149 CGATTCTTGTCCCCCTTGTTATAG 58.943 45.833 0.00 0.00 0.00 1.31
875 884 4.855298 TTCTTGTCCCCCTTGTTATAGG 57.145 45.455 0.00 0.00 34.92 2.57
876 885 4.083080 TCTTGTCCCCCTTGTTATAGGA 57.917 45.455 0.00 0.00 37.50 2.94
877 886 4.641868 TCTTGTCCCCCTTGTTATAGGAT 58.358 43.478 0.00 0.00 37.50 3.24
878 887 4.412199 TCTTGTCCCCCTTGTTATAGGATG 59.588 45.833 0.00 0.00 37.50 3.51
879 888 4.015617 TGTCCCCCTTGTTATAGGATGA 57.984 45.455 0.00 0.00 37.50 2.92
880 889 4.577096 TGTCCCCCTTGTTATAGGATGAT 58.423 43.478 0.00 0.00 37.50 2.45
881 890 4.350816 TGTCCCCCTTGTTATAGGATGATG 59.649 45.833 0.00 0.00 37.50 3.07
882 891 3.916349 TCCCCCTTGTTATAGGATGATGG 59.084 47.826 0.00 0.00 37.50 3.51
893 902 3.446442 AGGATGATGGCTGTTGAAGTT 57.554 42.857 0.00 0.00 0.00 2.66
900 909 0.315251 GGCTGTTGAAGTTTCTGCCC 59.685 55.000 10.89 0.00 33.45 5.36
905 914 1.546029 GTTGAAGTTTCTGCCCCCATC 59.454 52.381 0.00 0.00 0.00 3.51
915 924 0.899717 TGCCCCCATCTGTTTCTTGC 60.900 55.000 0.00 0.00 0.00 4.01
918 927 0.972471 CCCCATCTGTTTCTTGCCCC 60.972 60.000 0.00 0.00 0.00 5.80
923 932 3.071457 CCATCTGTTTCTTGCCCCTTTTT 59.929 43.478 0.00 0.00 0.00 1.94
924 933 3.817709 TCTGTTTCTTGCCCCTTTTTG 57.182 42.857 0.00 0.00 0.00 2.44
925 934 2.158971 TCTGTTTCTTGCCCCTTTTTGC 60.159 45.455 0.00 0.00 0.00 3.68
926 935 1.836802 TGTTTCTTGCCCCTTTTTGCT 59.163 42.857 0.00 0.00 0.00 3.91
927 936 3.034635 TGTTTCTTGCCCCTTTTTGCTA 58.965 40.909 0.00 0.00 0.00 3.49
954 963 1.680207 GATTCCCTTCATTCAGCAGGC 59.320 52.381 0.00 0.00 28.00 4.85
956 965 1.583556 TCCCTTCATTCAGCAGGCTA 58.416 50.000 0.00 0.00 28.00 3.93
961 970 4.889409 CCCTTCATTCAGCAGGCTATTTAA 59.111 41.667 0.00 0.00 28.00 1.52
993 1037 5.663106 AGAGCCAAGATAGATACTTGTCCAA 59.337 40.000 0.00 0.00 41.88 3.53
995 1039 5.189736 AGCCAAGATAGATACTTGTCCAACA 59.810 40.000 0.00 0.00 41.88 3.33
1050 1094 1.760029 GGGGTGATGAACTCTCTCCTC 59.240 57.143 0.00 0.00 35.47 3.71
1398 1442 0.594540 TGCATGAAACAAGTGCACGC 60.595 50.000 12.01 5.90 43.30 5.34
1489 1535 7.065563 CACTCTATGAGAATGCAGCTAAACTTT 59.934 37.037 1.25 0.00 33.32 2.66
1611 1657 0.798776 CAACACTCGCCAATGAGGTC 59.201 55.000 0.00 0.00 40.39 3.85
1629 1675 3.039011 GGTCTACCATAAGCTGAAGGGA 58.961 50.000 7.00 0.00 35.64 4.20
1680 1728 7.381323 CAGTTTCTCAAAAGCCAAATATTCCT 58.619 34.615 0.00 0.00 0.00 3.36
1731 1779 3.636679 TGGGTGTGGACAATCTTTTCAA 58.363 40.909 0.00 0.00 0.00 2.69
1838 1895 4.492494 TGTTCACATGTGCCTCTGATAT 57.508 40.909 21.38 0.00 0.00 1.63
2013 4280 7.852550 ATCATCGATGATCTATGGGATGTAT 57.147 36.000 30.75 8.62 43.72 2.29
2014 4281 7.282332 TCATCGATGATCTATGGGATGTATC 57.718 40.000 23.99 0.00 34.33 2.24
2015 4282 6.835488 TCATCGATGATCTATGGGATGTATCA 59.165 38.462 23.99 0.00 34.33 2.15
2016 4283 6.705863 TCGATGATCTATGGGATGTATCAG 57.294 41.667 0.00 0.00 34.33 2.90
2017 4284 5.068329 TCGATGATCTATGGGATGTATCAGC 59.932 44.000 0.00 0.00 34.33 4.26
2018 4285 5.163478 CGATGATCTATGGGATGTATCAGCA 60.163 44.000 0.00 0.00 33.68 4.41
2019 4286 6.628844 CGATGATCTATGGGATGTATCAGCAA 60.629 42.308 0.00 0.00 33.68 3.91
2020 4287 6.631763 TGATCTATGGGATGTATCAGCAAT 57.368 37.500 0.00 0.00 34.33 3.56
2063 5135 6.029346 AGTGTGCTTTCCCAGAAAATAATG 57.971 37.500 0.00 0.00 0.00 1.90
2075 5147 8.044908 TCCCAGAAAATAATGTTGGTAGTAGAC 58.955 37.037 0.00 0.00 0.00 2.59
2107 5179 4.762251 ACTACAAGAATCAAGACTTTGGCC 59.238 41.667 0.00 0.00 34.97 5.36
2108 5180 3.565307 ACAAGAATCAAGACTTTGGCCA 58.435 40.909 0.00 0.00 34.97 5.36
2109 5181 4.154942 ACAAGAATCAAGACTTTGGCCAT 58.845 39.130 6.09 0.00 34.97 4.40
2215 5287 4.080129 AGGATATTTGGCTCTGAAGAAGCA 60.080 41.667 0.00 0.00 0.00 3.91
2246 5318 5.529060 GGTCAACTCAGAGATGTTTCAGTTT 59.471 40.000 3.79 0.00 0.00 2.66
2263 5335 7.426929 TTCAGTTTAGATTCTCAAGAAGTGC 57.573 36.000 0.00 0.00 37.48 4.40
2318 5390 4.333926 CCAGCCTATTAGCAAGTGAAAGTC 59.666 45.833 0.00 0.00 34.23 3.01
2326 5398 1.876156 GCAAGTGAAAGTCCTGACCAG 59.124 52.381 0.00 0.00 0.00 4.00
2371 5443 0.036306 ATTCGTTGGGGTCAGTGTCC 59.964 55.000 0.00 0.00 0.00 4.02
2374 5446 2.122769 TTGGGGTCAGTGTCCGGA 60.123 61.111 0.00 0.00 0.00 5.14
2494 5566 7.556844 TGTTTCTGGAGGACTCTGAAATATAC 58.443 38.462 16.98 10.14 35.94 1.47
2515 5587 1.098050 GGCATGAGTTGGTAAGCCTG 58.902 55.000 0.00 0.00 39.02 4.85
2569 5641 2.038557 TGGACAAAGCCTAGAACAGACC 59.961 50.000 0.00 0.00 0.00 3.85
2576 5648 1.335142 GCCTAGAACAGACCGCGATAG 60.335 57.143 8.23 0.00 0.00 2.08
2590 5662 5.305585 ACCGCGATAGGTTATTTCAATGAT 58.694 37.500 8.23 0.00 43.00 2.45
2626 5698 4.340381 AGCCTTATTCAACCTGCATTGATC 59.660 41.667 3.66 0.00 38.37 2.92
2630 5702 7.270047 CCTTATTCAACCTGCATTGATCAAAT 58.730 34.615 13.09 0.00 38.37 2.32
2632 5704 5.988310 TTCAACCTGCATTGATCAAATCT 57.012 34.783 13.09 0.00 38.37 2.40
2669 5741 8.407832 TGAAATCTTGCAAAGTACATGATATGG 58.592 33.333 0.00 0.00 46.34 2.74
2717 5789 8.097038 AGTCTGCACAAGAGAATTTTATCACTA 58.903 33.333 0.00 0.00 34.84 2.74
2750 5822 1.556911 CAGAGGCCATTACAGGACAGT 59.443 52.381 5.01 0.00 40.05 3.55
2754 5826 2.092323 GGCCATTACAGGACAGTTTCC 58.908 52.381 0.00 0.00 46.33 3.13
2790 5862 2.106338 TGCTCTTCAACTTGGATGGTGA 59.894 45.455 0.00 0.00 0.00 4.02
2799 5871 4.032960 ACTTGGATGGTGAAATACTGCA 57.967 40.909 0.00 0.00 0.00 4.41
2845 5917 2.518949 CGATCGTTTGCAAATTGGAGG 58.481 47.619 16.21 6.30 0.00 4.30
2917 5995 3.326836 AAGGCTGACTTCAGTTCTAGC 57.673 47.619 8.04 2.23 45.45 3.42
2926 6004 3.056891 ACTTCAGTTCTAGCTCTGCTGAC 60.057 47.826 8.94 0.00 40.10 3.51
2927 6005 1.821753 TCAGTTCTAGCTCTGCTGACC 59.178 52.381 1.96 0.00 40.10 4.02
2935 6013 2.280797 TCTGCTGACCACAACCGC 60.281 61.111 0.00 0.00 0.00 5.68
2978 6056 5.842907 TGTGTAAGTTATATCAGCTGCGAT 58.157 37.500 9.47 7.13 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.469807 CGGCCTGCAAAATTAAATAATTACATA 57.530 29.630 0.00 0.00 35.00 2.29
12 13 7.984617 ACGGCCTGCAAAATTAAATAATTACAT 59.015 29.630 0.00 0.00 35.00 2.29
13 14 7.324178 ACGGCCTGCAAAATTAAATAATTACA 58.676 30.769 0.00 0.00 35.00 2.41
14 15 7.764695 ACGGCCTGCAAAATTAAATAATTAC 57.235 32.000 0.00 0.00 35.00 1.89
15 16 7.644551 CGTACGGCCTGCAAAATTAAATAATTA 59.355 33.333 7.57 0.00 35.00 1.40
16 17 6.474102 CGTACGGCCTGCAAAATTAAATAATT 59.526 34.615 7.57 0.00 37.49 1.40
17 18 5.974751 CGTACGGCCTGCAAAATTAAATAAT 59.025 36.000 7.57 0.00 0.00 1.28
18 19 5.123502 TCGTACGGCCTGCAAAATTAAATAA 59.876 36.000 16.52 0.00 0.00 1.40
19 20 4.634883 TCGTACGGCCTGCAAAATTAAATA 59.365 37.500 16.52 0.00 0.00 1.40
20 21 3.440872 TCGTACGGCCTGCAAAATTAAAT 59.559 39.130 16.52 0.00 0.00 1.40
21 22 2.812591 TCGTACGGCCTGCAAAATTAAA 59.187 40.909 16.52 0.00 0.00 1.52
22 23 2.424557 TCGTACGGCCTGCAAAATTAA 58.575 42.857 16.52 0.00 0.00 1.40
23 24 2.096220 TCGTACGGCCTGCAAAATTA 57.904 45.000 16.52 0.00 0.00 1.40
24 25 1.132262 CATCGTACGGCCTGCAAAATT 59.868 47.619 16.52 0.00 0.00 1.82
25 26 0.732571 CATCGTACGGCCTGCAAAAT 59.267 50.000 16.52 0.00 0.00 1.82
26 27 1.302383 CCATCGTACGGCCTGCAAAA 61.302 55.000 16.52 0.00 0.00 2.44
27 28 1.743623 CCATCGTACGGCCTGCAAA 60.744 57.895 16.52 0.00 0.00 3.68
28 29 2.125310 CCATCGTACGGCCTGCAA 60.125 61.111 16.52 0.00 0.00 4.08
29 30 2.572095 CTTCCATCGTACGGCCTGCA 62.572 60.000 16.52 0.00 0.00 4.41
30 31 1.883084 CTTCCATCGTACGGCCTGC 60.883 63.158 16.52 0.00 0.00 4.85
31 32 0.742505 TACTTCCATCGTACGGCCTG 59.257 55.000 16.52 10.53 0.00 4.85
32 33 0.743097 GTACTTCCATCGTACGGCCT 59.257 55.000 16.52 0.00 0.00 5.19
33 34 0.457035 TGTACTTCCATCGTACGGCC 59.543 55.000 16.52 0.00 39.98 6.13
34 35 1.402968 TCTGTACTTCCATCGTACGGC 59.597 52.381 16.52 0.00 41.67 5.68
35 36 3.314357 TGATCTGTACTTCCATCGTACGG 59.686 47.826 16.52 0.00 42.72 4.02
36 37 4.547406 TGATCTGTACTTCCATCGTACG 57.453 45.455 9.53 9.53 39.98 3.67
37 38 4.740695 GCTTGATCTGTACTTCCATCGTAC 59.259 45.833 0.00 0.00 38.13 3.67
38 39 4.497507 CGCTTGATCTGTACTTCCATCGTA 60.498 45.833 0.00 0.00 0.00 3.43
39 40 3.735208 CGCTTGATCTGTACTTCCATCGT 60.735 47.826 0.00 0.00 0.00 3.73
40 41 2.791560 CGCTTGATCTGTACTTCCATCG 59.208 50.000 0.00 0.00 0.00 3.84
41 42 3.786635 ACGCTTGATCTGTACTTCCATC 58.213 45.455 0.00 0.00 0.00 3.51
42 43 3.895232 ACGCTTGATCTGTACTTCCAT 57.105 42.857 0.00 0.00 0.00 3.41
43 44 3.508402 TGTACGCTTGATCTGTACTTCCA 59.492 43.478 14.58 0.00 39.30 3.53
44 45 4.106029 TGTACGCTTGATCTGTACTTCC 57.894 45.455 14.58 0.00 39.30 3.46
45 46 4.031878 GCTTGTACGCTTGATCTGTACTTC 59.968 45.833 14.58 0.00 39.30 3.01
46 47 3.927142 GCTTGTACGCTTGATCTGTACTT 59.073 43.478 14.58 0.00 39.30 2.24
47 48 3.056821 TGCTTGTACGCTTGATCTGTACT 60.057 43.478 14.58 0.00 39.30 2.73
48 49 3.250744 TGCTTGTACGCTTGATCTGTAC 58.749 45.455 0.00 3.11 39.08 2.90
49 50 3.056821 ACTGCTTGTACGCTTGATCTGTA 60.057 43.478 0.00 0.00 0.00 2.74
50 51 2.289072 ACTGCTTGTACGCTTGATCTGT 60.289 45.455 0.00 0.00 0.00 3.41
51 52 2.093310 CACTGCTTGTACGCTTGATCTG 59.907 50.000 0.00 0.00 0.00 2.90
52 53 2.341257 CACTGCTTGTACGCTTGATCT 58.659 47.619 0.00 0.00 0.00 2.75
53 54 1.394917 CCACTGCTTGTACGCTTGATC 59.605 52.381 0.00 0.00 0.00 2.92
54 55 1.270839 ACCACTGCTTGTACGCTTGAT 60.271 47.619 0.00 0.00 0.00 2.57
55 56 0.105964 ACCACTGCTTGTACGCTTGA 59.894 50.000 0.00 0.00 0.00 3.02
56 57 1.459592 GTACCACTGCTTGTACGCTTG 59.540 52.381 0.00 0.00 0.00 4.01
57 58 1.343465 AGTACCACTGCTTGTACGCTT 59.657 47.619 0.00 0.00 41.67 4.68
58 59 0.966920 AGTACCACTGCTTGTACGCT 59.033 50.000 0.00 0.00 41.67 5.07
59 60 1.068474 CAGTACCACTGCTTGTACGC 58.932 55.000 0.00 0.00 39.62 4.42
69 70 2.494059 GTGTGTTCATGCAGTACCACT 58.506 47.619 9.75 0.00 0.00 4.00
70 71 1.194547 CGTGTGTTCATGCAGTACCAC 59.805 52.381 0.00 0.00 0.00 4.16
71 72 1.202592 ACGTGTGTTCATGCAGTACCA 60.203 47.619 0.00 0.00 34.22 3.25
72 73 1.194547 CACGTGTGTTCATGCAGTACC 59.805 52.381 7.58 0.00 34.22 3.34
73 74 1.398451 GCACGTGTGTTCATGCAGTAC 60.398 52.381 18.38 0.00 38.00 2.73
74 75 0.865111 GCACGTGTGTTCATGCAGTA 59.135 50.000 18.38 0.00 38.00 2.74
75 76 0.815213 AGCACGTGTGTTCATGCAGT 60.815 50.000 18.38 0.00 40.63 4.40
76 77 1.127397 CTAGCACGTGTGTTCATGCAG 59.873 52.381 18.38 0.00 40.63 4.41
77 78 1.147473 CTAGCACGTGTGTTCATGCA 58.853 50.000 18.38 0.00 40.63 3.96
78 79 0.179215 GCTAGCACGTGTGTTCATGC 60.179 55.000 18.38 8.48 38.39 4.06
79 80 0.443869 GGCTAGCACGTGTGTTCATG 59.556 55.000 18.24 2.32 36.71 3.07
80 81 0.321671 AGGCTAGCACGTGTGTTCAT 59.678 50.000 18.24 0.00 0.00 2.57
81 82 0.599991 CAGGCTAGCACGTGTGTTCA 60.600 55.000 18.24 0.00 0.00 3.18
82 83 1.291877 CCAGGCTAGCACGTGTGTTC 61.292 60.000 18.24 0.00 0.00 3.18
83 84 1.301716 CCAGGCTAGCACGTGTGTT 60.302 57.895 18.24 6.02 0.00 3.32
84 85 2.343758 CCAGGCTAGCACGTGTGT 59.656 61.111 18.24 7.62 0.00 3.72
85 86 3.121030 GCCAGGCTAGCACGTGTG 61.121 66.667 18.24 6.00 0.00 3.82
86 87 4.394712 GGCCAGGCTAGCACGTGT 62.395 66.667 18.24 6.65 0.00 4.49
87 88 4.393155 TGGCCAGGCTAGCACGTG 62.393 66.667 18.24 12.28 0.00 4.49
88 89 4.087892 CTGGCCAGGCTAGCACGT 62.088 66.667 26.14 0.00 29.14 4.49
89 90 4.087892 ACTGGCCAGGCTAGCACG 62.088 66.667 35.42 9.59 40.85 5.34
90 91 2.124942 GACTGGCCAGGCTAGCAC 60.125 66.667 35.42 14.78 40.85 4.40
91 92 2.607442 TGACTGGCCAGGCTAGCA 60.607 61.111 37.95 22.19 40.85 3.49
92 93 2.188994 CTGACTGGCCAGGCTAGC 59.811 66.667 37.95 20.00 40.85 3.42
93 94 2.188994 GCTGACTGGCCAGGCTAG 59.811 66.667 37.95 30.80 42.85 3.42
101 102 2.557920 ATATTAGCTGGCTGACTGGC 57.442 50.000 5.25 0.00 42.18 4.85
102 103 3.324846 TGGTATATTAGCTGGCTGACTGG 59.675 47.826 5.25 0.00 0.00 4.00
103 104 4.607293 TGGTATATTAGCTGGCTGACTG 57.393 45.455 5.25 0.00 0.00 3.51
104 105 4.408921 TGTTGGTATATTAGCTGGCTGACT 59.591 41.667 5.25 0.00 0.00 3.41
105 106 4.511826 GTGTTGGTATATTAGCTGGCTGAC 59.488 45.833 5.25 0.00 0.00 3.51
106 107 4.163268 TGTGTTGGTATATTAGCTGGCTGA 59.837 41.667 5.25 0.00 0.00 4.26
107 108 4.450976 TGTGTTGGTATATTAGCTGGCTG 58.549 43.478 5.25 0.00 0.00 4.85
108 109 4.771114 TGTGTTGGTATATTAGCTGGCT 57.229 40.909 0.00 0.00 0.00 4.75
109 110 5.308825 AGATGTGTTGGTATATTAGCTGGC 58.691 41.667 0.00 0.00 0.00 4.85
110 111 6.425114 GTGAGATGTGTTGGTATATTAGCTGG 59.575 42.308 0.00 0.00 0.00 4.85
111 112 6.986231 TGTGAGATGTGTTGGTATATTAGCTG 59.014 38.462 0.00 0.00 0.00 4.24
112 113 6.986817 GTGTGAGATGTGTTGGTATATTAGCT 59.013 38.462 0.00 0.00 0.00 3.32
113 114 6.761242 TGTGTGAGATGTGTTGGTATATTAGC 59.239 38.462 0.00 0.00 0.00 3.09
114 115 8.716646 TTGTGTGAGATGTGTTGGTATATTAG 57.283 34.615 0.00 0.00 0.00 1.73
115 116 8.536175 TCTTGTGTGAGATGTGTTGGTATATTA 58.464 33.333 0.00 0.00 0.00 0.98
116 117 7.394016 TCTTGTGTGAGATGTGTTGGTATATT 58.606 34.615 0.00 0.00 0.00 1.28
117 118 6.946340 TCTTGTGTGAGATGTGTTGGTATAT 58.054 36.000 0.00 0.00 0.00 0.86
118 119 6.353404 TCTTGTGTGAGATGTGTTGGTATA 57.647 37.500 0.00 0.00 0.00 1.47
119 120 5.227569 TCTTGTGTGAGATGTGTTGGTAT 57.772 39.130 0.00 0.00 0.00 2.73
120 121 4.503123 CCTCTTGTGTGAGATGTGTTGGTA 60.503 45.833 0.00 0.00 36.23 3.25
121 122 3.470709 CTCTTGTGTGAGATGTGTTGGT 58.529 45.455 0.00 0.00 36.23 3.67
122 123 2.810274 CCTCTTGTGTGAGATGTGTTGG 59.190 50.000 0.00 0.00 36.23 3.77
123 124 3.732212 TCCTCTTGTGTGAGATGTGTTG 58.268 45.455 0.00 0.00 36.23 3.33
124 125 3.805108 GCTCCTCTTGTGTGAGATGTGTT 60.805 47.826 0.00 0.00 36.23 3.32
125 126 2.289320 GCTCCTCTTGTGTGAGATGTGT 60.289 50.000 0.00 0.00 36.23 3.72
126 127 2.289257 TGCTCCTCTTGTGTGAGATGTG 60.289 50.000 0.00 0.00 36.23 3.21
127 128 1.973515 TGCTCCTCTTGTGTGAGATGT 59.026 47.619 0.00 0.00 36.23 3.06
128 129 2.619147 CTGCTCCTCTTGTGTGAGATG 58.381 52.381 0.00 0.00 36.23 2.90
129 130 1.554160 CCTGCTCCTCTTGTGTGAGAT 59.446 52.381 0.00 0.00 36.23 2.75
130 131 0.972134 CCTGCTCCTCTTGTGTGAGA 59.028 55.000 0.00 0.00 36.23 3.27
131 132 0.673022 GCCTGCTCCTCTTGTGTGAG 60.673 60.000 0.00 0.00 0.00 3.51
132 133 1.372683 GCCTGCTCCTCTTGTGTGA 59.627 57.895 0.00 0.00 0.00 3.58
133 134 2.031516 CGCCTGCTCCTCTTGTGTG 61.032 63.158 0.00 0.00 0.00 3.82
134 135 2.345244 CGCCTGCTCCTCTTGTGT 59.655 61.111 0.00 0.00 0.00 3.72
135 136 3.123620 GCGCCTGCTCCTCTTGTG 61.124 66.667 0.00 0.00 38.39 3.33
136 137 4.749310 CGCGCCTGCTCCTCTTGT 62.749 66.667 0.00 0.00 39.65 3.16
143 144 4.521062 ATGTCTCCGCGCCTGCTC 62.521 66.667 0.00 0.00 39.65 4.26
144 145 4.827087 CATGTCTCCGCGCCTGCT 62.827 66.667 0.00 0.00 39.65 4.24
146 147 2.434884 AACATGTCTCCGCGCCTG 60.435 61.111 0.00 0.00 0.00 4.85
147 148 2.434884 CAACATGTCTCCGCGCCT 60.435 61.111 0.00 0.00 0.00 5.52
148 149 2.434185 TCAACATGTCTCCGCGCC 60.434 61.111 0.00 0.00 0.00 6.53
149 150 3.084579 CTCAACATGTCTCCGCGC 58.915 61.111 0.00 0.00 0.00 6.86
150 151 1.446792 AGCTCAACATGTCTCCGCG 60.447 57.895 0.00 0.00 0.00 6.46
151 152 1.975363 GCAGCTCAACATGTCTCCGC 61.975 60.000 0.00 0.00 0.00 5.54
152 153 0.671472 TGCAGCTCAACATGTCTCCG 60.671 55.000 0.00 0.00 0.00 4.63
153 154 1.400846 CATGCAGCTCAACATGTCTCC 59.599 52.381 0.00 0.00 39.05 3.71
154 155 1.202154 GCATGCAGCTCAACATGTCTC 60.202 52.381 14.21 3.30 44.43 3.36
155 156 0.809385 GCATGCAGCTCAACATGTCT 59.191 50.000 14.21 0.00 44.43 3.41
156 157 0.524414 TGCATGCAGCTCAACATGTC 59.476 50.000 18.46 12.33 44.43 3.06
157 158 0.526211 CTGCATGCAGCTCAACATGT 59.474 50.000 33.18 0.00 44.43 3.21
158 159 3.329114 CTGCATGCAGCTCAACATG 57.671 52.632 33.18 9.09 45.19 3.21
190 191 4.906618 AGTTACAAGTGATTACCAGGTGG 58.093 43.478 0.76 0.00 42.17 4.61
191 192 6.877611 AAAGTTACAAGTGATTACCAGGTG 57.122 37.500 0.76 0.00 0.00 4.00
192 193 7.891498 AAAAAGTTACAAGTGATTACCAGGT 57.109 32.000 0.00 0.00 0.00 4.00
217 218 9.865152 TCAAATGATTATGAAATGATGGACCTA 57.135 29.630 0.00 0.00 0.00 3.08
218 219 8.771521 TCAAATGATTATGAAATGATGGACCT 57.228 30.769 0.00 0.00 0.00 3.85
219 220 9.252962 GTTCAAATGATTATGAAATGATGGACC 57.747 33.333 4.99 0.00 37.31 4.46
254 255 9.158233 CATTTTCAAGCTGAACAATATTTGGAT 57.842 29.630 0.00 0.00 35.89 3.41
255 256 8.149647 ACATTTTCAAGCTGAACAATATTTGGA 58.850 29.630 0.00 0.00 35.89 3.53
256 257 8.314143 ACATTTTCAAGCTGAACAATATTTGG 57.686 30.769 0.00 0.00 35.89 3.28
257 258 8.980610 TGACATTTTCAAGCTGAACAATATTTG 58.019 29.630 0.00 0.00 35.89 2.32
258 259 9.545105 TTGACATTTTCAAGCTGAACAATATTT 57.455 25.926 0.00 0.00 39.45 1.40
259 260 8.981647 GTTGACATTTTCAAGCTGAACAATATT 58.018 29.630 0.00 0.00 45.23 1.28
260 261 7.326789 CGTTGACATTTTCAAGCTGAACAATAT 59.673 33.333 0.00 0.00 45.23 1.28
261 262 6.636447 CGTTGACATTTTCAAGCTGAACAATA 59.364 34.615 0.00 0.00 45.23 1.90
262 263 5.459762 CGTTGACATTTTCAAGCTGAACAAT 59.540 36.000 0.00 0.00 45.23 2.71
263 264 4.797868 CGTTGACATTTTCAAGCTGAACAA 59.202 37.500 0.00 0.00 45.23 2.83
264 265 4.095632 TCGTTGACATTTTCAAGCTGAACA 59.904 37.500 0.00 0.00 45.23 3.18
265 266 4.597079 TCGTTGACATTTTCAAGCTGAAC 58.403 39.130 0.00 0.00 45.23 3.18
266 267 4.891627 TCGTTGACATTTTCAAGCTGAA 57.108 36.364 0.00 0.00 45.23 3.02
267 268 4.335315 ACTTCGTTGACATTTTCAAGCTGA 59.665 37.500 0.00 0.00 45.23 4.26
268 269 4.601019 ACTTCGTTGACATTTTCAAGCTG 58.399 39.130 0.00 0.00 45.23 4.24
269 270 4.900635 ACTTCGTTGACATTTTCAAGCT 57.099 36.364 0.00 0.00 45.23 3.74
270 271 5.569059 CCATACTTCGTTGACATTTTCAAGC 59.431 40.000 0.00 0.00 45.23 4.01
271 272 5.569059 GCCATACTTCGTTGACATTTTCAAG 59.431 40.000 0.00 0.00 45.23 3.02
272 273 5.009110 TGCCATACTTCGTTGACATTTTCAA 59.991 36.000 0.00 0.00 42.26 2.69
273 274 4.517075 TGCCATACTTCGTTGACATTTTCA 59.483 37.500 0.00 0.00 0.00 2.69
274 275 5.041951 TGCCATACTTCGTTGACATTTTC 57.958 39.130 0.00 0.00 0.00 2.29
275 276 4.759693 TCTGCCATACTTCGTTGACATTTT 59.240 37.500 0.00 0.00 0.00 1.82
276 277 4.323417 TCTGCCATACTTCGTTGACATTT 58.677 39.130 0.00 0.00 0.00 2.32
277 278 3.937814 TCTGCCATACTTCGTTGACATT 58.062 40.909 0.00 0.00 0.00 2.71
278 279 3.610040 TCTGCCATACTTCGTTGACAT 57.390 42.857 0.00 0.00 0.00 3.06
279 280 3.261580 CATCTGCCATACTTCGTTGACA 58.738 45.455 0.00 0.00 0.00 3.58
280 281 2.609459 CCATCTGCCATACTTCGTTGAC 59.391 50.000 0.00 0.00 0.00 3.18
281 282 2.905075 CCATCTGCCATACTTCGTTGA 58.095 47.619 0.00 0.00 0.00 3.18
282 283 1.331756 GCCATCTGCCATACTTCGTTG 59.668 52.381 0.00 0.00 0.00 4.10
283 284 1.210478 AGCCATCTGCCATACTTCGTT 59.790 47.619 0.00 0.00 42.71 3.85
284 285 0.833287 AGCCATCTGCCATACTTCGT 59.167 50.000 0.00 0.00 42.71 3.85
285 286 2.224042 TGTAGCCATCTGCCATACTTCG 60.224 50.000 0.00 0.00 42.71 3.79
286 287 3.070159 TCTGTAGCCATCTGCCATACTTC 59.930 47.826 0.00 0.00 42.71 3.01
287 288 3.041211 TCTGTAGCCATCTGCCATACTT 58.959 45.455 0.00 0.00 42.71 2.24
288 289 2.682594 TCTGTAGCCATCTGCCATACT 58.317 47.619 0.00 0.00 42.71 2.12
289 290 3.692257 ATCTGTAGCCATCTGCCATAC 57.308 47.619 0.00 0.00 42.71 2.39
290 291 3.196469 GCTATCTGTAGCCATCTGCCATA 59.804 47.826 0.00 0.00 46.14 2.74
291 292 2.027377 GCTATCTGTAGCCATCTGCCAT 60.027 50.000 0.00 0.00 46.14 4.40
292 293 1.345741 GCTATCTGTAGCCATCTGCCA 59.654 52.381 0.00 0.00 46.14 4.92
293 294 2.091852 GCTATCTGTAGCCATCTGCC 57.908 55.000 0.00 0.00 46.14 4.85
302 303 0.671781 GGCCGGCATGCTATCTGTAG 60.672 60.000 30.85 0.00 0.00 2.74
303 304 1.371183 GGCCGGCATGCTATCTGTA 59.629 57.895 30.85 0.00 0.00 2.74
304 305 2.111878 GGCCGGCATGCTATCTGT 59.888 61.111 30.85 0.00 0.00 3.41
305 306 2.670934 GGGCCGGCATGCTATCTG 60.671 66.667 30.85 3.01 0.00 2.90
306 307 3.170672 TGGGCCGGCATGCTATCT 61.171 61.111 30.85 0.00 0.00 1.98
307 308 2.670934 CTGGGCCGGCATGCTATC 60.671 66.667 30.85 8.62 0.00 2.08
308 309 4.275508 CCTGGGCCGGCATGCTAT 62.276 66.667 30.85 0.00 0.00 2.97
320 321 3.132029 TTGCGATATGGGCCCTGGG 62.132 63.158 25.70 8.86 0.00 4.45
321 322 1.601759 CTTGCGATATGGGCCCTGG 60.602 63.158 25.70 5.07 0.00 4.45
322 323 0.886490 GTCTTGCGATATGGGCCCTG 60.886 60.000 25.70 8.75 0.00 4.45
323 324 1.344953 TGTCTTGCGATATGGGCCCT 61.345 55.000 25.70 11.37 0.00 5.19
324 325 0.250901 ATGTCTTGCGATATGGGCCC 60.251 55.000 17.59 17.59 0.00 5.80
325 326 1.537202 GAATGTCTTGCGATATGGGCC 59.463 52.381 0.00 0.00 0.00 5.80
326 327 1.537202 GGAATGTCTTGCGATATGGGC 59.463 52.381 0.00 0.00 0.00 5.36
327 328 2.810274 CTGGAATGTCTTGCGATATGGG 59.190 50.000 0.00 0.00 0.00 4.00
328 329 3.732212 TCTGGAATGTCTTGCGATATGG 58.268 45.455 0.00 0.00 0.00 2.74
329 330 5.295292 AGTTTCTGGAATGTCTTGCGATATG 59.705 40.000 0.00 0.00 0.00 1.78
330 331 5.431765 AGTTTCTGGAATGTCTTGCGATAT 58.568 37.500 0.00 0.00 0.00 1.63
331 332 4.832248 AGTTTCTGGAATGTCTTGCGATA 58.168 39.130 0.00 0.00 0.00 2.92
332 333 3.679389 AGTTTCTGGAATGTCTTGCGAT 58.321 40.909 0.00 0.00 0.00 4.58
333 334 3.126001 AGTTTCTGGAATGTCTTGCGA 57.874 42.857 0.00 0.00 0.00 5.10
334 335 3.904136 AAGTTTCTGGAATGTCTTGCG 57.096 42.857 0.00 0.00 0.00 4.85
335 336 4.209911 GCAAAAGTTTCTGGAATGTCTTGC 59.790 41.667 0.00 0.00 0.00 4.01
336 337 5.350633 TGCAAAAGTTTCTGGAATGTCTTG 58.649 37.500 0.00 0.00 0.00 3.02
337 338 5.596836 TGCAAAAGTTTCTGGAATGTCTT 57.403 34.783 0.00 0.00 0.00 3.01
338 339 5.105392 TGTTGCAAAAGTTTCTGGAATGTCT 60.105 36.000 0.00 0.00 0.00 3.41
339 340 5.108517 TGTTGCAAAAGTTTCTGGAATGTC 58.891 37.500 0.00 0.00 0.00 3.06
340 341 5.083533 TGTTGCAAAAGTTTCTGGAATGT 57.916 34.783 0.00 0.00 0.00 2.71
341 342 6.607735 ATTGTTGCAAAAGTTTCTGGAATG 57.392 33.333 0.00 0.00 0.00 2.67
342 343 6.822676 TGAATTGTTGCAAAAGTTTCTGGAAT 59.177 30.769 0.00 0.00 0.00 3.01
343 344 6.169094 TGAATTGTTGCAAAAGTTTCTGGAA 58.831 32.000 0.00 0.00 0.00 3.53
344 345 5.728471 TGAATTGTTGCAAAAGTTTCTGGA 58.272 33.333 0.00 0.00 0.00 3.86
345 346 6.423862 CATGAATTGTTGCAAAAGTTTCTGG 58.576 36.000 0.00 0.00 0.00 3.86
346 347 6.423862 CCATGAATTGTTGCAAAAGTTTCTG 58.576 36.000 0.00 0.95 0.00 3.02
347 348 5.007921 GCCATGAATTGTTGCAAAAGTTTCT 59.992 36.000 0.00 0.00 0.00 2.52
348 349 5.207033 GCCATGAATTGTTGCAAAAGTTTC 58.793 37.500 0.00 4.10 0.00 2.78
349 350 4.639310 TGCCATGAATTGTTGCAAAAGTTT 59.361 33.333 0.00 0.00 0.00 2.66
350 351 4.197750 TGCCATGAATTGTTGCAAAAGTT 58.802 34.783 0.00 0.00 0.00 2.66
351 352 3.806380 TGCCATGAATTGTTGCAAAAGT 58.194 36.364 0.00 0.00 0.00 2.66
352 353 4.815040 TTGCCATGAATTGTTGCAAAAG 57.185 36.364 0.00 0.00 38.83 2.27
354 355 4.449131 TCTTTGCCATGAATTGTTGCAAA 58.551 34.783 0.00 13.11 46.27 3.68
355 356 4.069300 TCTTTGCCATGAATTGTTGCAA 57.931 36.364 0.00 0.00 39.92 4.08
356 357 3.747854 TCTTTGCCATGAATTGTTGCA 57.252 38.095 0.00 0.00 0.00 4.08
357 358 4.060205 ACTTCTTTGCCATGAATTGTTGC 58.940 39.130 0.00 0.00 0.00 4.17
358 359 5.754406 TGAACTTCTTTGCCATGAATTGTTG 59.246 36.000 0.00 0.00 0.00 3.33
359 360 5.916318 TGAACTTCTTTGCCATGAATTGTT 58.084 33.333 0.00 0.00 0.00 2.83
360 361 5.302568 TCTGAACTTCTTTGCCATGAATTGT 59.697 36.000 0.00 0.00 0.00 2.71
361 362 5.775686 TCTGAACTTCTTTGCCATGAATTG 58.224 37.500 0.00 0.00 0.00 2.32
362 363 6.395629 CATCTGAACTTCTTTGCCATGAATT 58.604 36.000 0.00 0.00 0.00 2.17
363 364 5.623824 GCATCTGAACTTCTTTGCCATGAAT 60.624 40.000 0.00 0.00 0.00 2.57
364 365 4.321452 GCATCTGAACTTCTTTGCCATGAA 60.321 41.667 0.00 0.00 0.00 2.57
365 366 3.192001 GCATCTGAACTTCTTTGCCATGA 59.808 43.478 0.00 0.00 0.00 3.07
366 367 3.508762 GCATCTGAACTTCTTTGCCATG 58.491 45.455 0.00 0.00 0.00 3.66
367 368 2.163010 CGCATCTGAACTTCTTTGCCAT 59.837 45.455 0.00 0.00 0.00 4.40
368 369 1.536766 CGCATCTGAACTTCTTTGCCA 59.463 47.619 0.00 0.00 0.00 4.92
369 370 1.135575 CCGCATCTGAACTTCTTTGCC 60.136 52.381 0.00 0.00 0.00 4.52
370 371 1.537202 ACCGCATCTGAACTTCTTTGC 59.463 47.619 0.00 0.00 0.00 3.68
371 372 4.245660 TCTACCGCATCTGAACTTCTTTG 58.754 43.478 0.00 0.00 0.00 2.77
372 373 4.499183 CTCTACCGCATCTGAACTTCTTT 58.501 43.478 0.00 0.00 0.00 2.52
373 374 3.118956 CCTCTACCGCATCTGAACTTCTT 60.119 47.826 0.00 0.00 0.00 2.52
374 375 2.428890 CCTCTACCGCATCTGAACTTCT 59.571 50.000 0.00 0.00 0.00 2.85
375 376 2.815478 CCTCTACCGCATCTGAACTTC 58.185 52.381 0.00 0.00 0.00 3.01
376 377 1.134670 GCCTCTACCGCATCTGAACTT 60.135 52.381 0.00 0.00 0.00 2.66
377 378 0.461961 GCCTCTACCGCATCTGAACT 59.538 55.000 0.00 0.00 0.00 3.01
378 379 0.872021 CGCCTCTACCGCATCTGAAC 60.872 60.000 0.00 0.00 0.00 3.18
379 380 1.035385 TCGCCTCTACCGCATCTGAA 61.035 55.000 0.00 0.00 0.00 3.02
380 381 1.453197 TCGCCTCTACCGCATCTGA 60.453 57.895 0.00 0.00 0.00 3.27
381 382 1.299468 GTCGCCTCTACCGCATCTG 60.299 63.158 0.00 0.00 0.00 2.90
382 383 2.835705 CGTCGCCTCTACCGCATCT 61.836 63.158 0.00 0.00 0.00 2.90
383 384 2.353607 CGTCGCCTCTACCGCATC 60.354 66.667 0.00 0.00 0.00 3.91
384 385 2.827190 TCGTCGCCTCTACCGCAT 60.827 61.111 0.00 0.00 0.00 4.73
385 386 3.807538 GTCGTCGCCTCTACCGCA 61.808 66.667 0.00 0.00 0.00 5.69
386 387 4.883300 CGTCGTCGCCTCTACCGC 62.883 72.222 0.00 0.00 0.00 5.68
387 388 3.031964 AACGTCGTCGCCTCTACCG 62.032 63.158 0.00 0.00 41.18 4.02
388 389 1.513586 CAACGTCGTCGCCTCTACC 60.514 63.158 0.00 0.00 41.18 3.18
389 390 2.150837 GCAACGTCGTCGCCTCTAC 61.151 63.158 0.00 0.00 41.18 2.59
390 391 2.177531 GCAACGTCGTCGCCTCTA 59.822 61.111 0.00 0.00 41.18 2.43
391 392 4.719369 GGCAACGTCGTCGCCTCT 62.719 66.667 20.09 0.00 42.78 3.69
395 396 4.059459 CAGTGGCAACGTCGTCGC 62.059 66.667 0.00 0.00 41.18 5.19
396 397 3.403057 CCAGTGGCAACGTCGTCG 61.403 66.667 0.00 0.00 43.34 5.12
397 398 2.022129 CTCCAGTGGCAACGTCGTC 61.022 63.158 3.51 0.00 42.51 4.20
398 399 2.029073 CTCCAGTGGCAACGTCGT 59.971 61.111 3.51 0.00 42.51 4.34
399 400 3.414700 GCTCCAGTGGCAACGTCG 61.415 66.667 3.51 0.00 42.51 5.12
400 401 0.391130 TATGCTCCAGTGGCAACGTC 60.391 55.000 3.51 0.00 43.14 4.34
401 402 0.673644 GTATGCTCCAGTGGCAACGT 60.674 55.000 3.51 0.00 43.14 3.99
402 403 0.673333 TGTATGCTCCAGTGGCAACG 60.673 55.000 3.51 0.00 43.14 4.10
403 404 1.402968 CATGTATGCTCCAGTGGCAAC 59.597 52.381 3.51 2.64 43.14 4.17
404 405 1.753930 CATGTATGCTCCAGTGGCAA 58.246 50.000 3.51 0.00 43.14 4.52
405 406 3.482147 CATGTATGCTCCAGTGGCA 57.518 52.632 3.51 0.00 44.05 4.92
416 417 0.667487 CCTCGCTACCGGCATGTATG 60.667 60.000 0.00 0.00 41.91 2.39
417 418 1.113517 ACCTCGCTACCGGCATGTAT 61.114 55.000 0.00 0.00 41.91 2.29
418 419 1.731433 GACCTCGCTACCGGCATGTA 61.731 60.000 0.00 0.00 41.91 2.29
419 420 3.075005 ACCTCGCTACCGGCATGT 61.075 61.111 0.00 0.00 41.91 3.21
420 421 2.279517 GACCTCGCTACCGGCATG 60.280 66.667 0.00 0.00 41.91 4.06
421 422 2.758327 TGACCTCGCTACCGGCAT 60.758 61.111 0.00 0.00 41.91 4.40
422 423 3.449227 CTGACCTCGCTACCGGCA 61.449 66.667 0.00 0.00 41.91 5.69
423 424 4.874977 GCTGACCTCGCTACCGGC 62.875 72.222 0.00 0.00 34.56 6.13
424 425 4.208686 GGCTGACCTCGCTACCGG 62.209 72.222 0.00 0.00 34.56 5.28
425 426 3.417275 CTGGCTGACCTCGCTACCG 62.417 68.421 0.00 0.00 36.63 4.02
426 427 2.052690 TCTGGCTGACCTCGCTACC 61.053 63.158 0.00 0.00 36.63 3.18
427 428 1.139947 GTCTGGCTGACCTCGCTAC 59.860 63.158 13.00 0.00 39.69 3.58
428 429 3.604629 GTCTGGCTGACCTCGCTA 58.395 61.111 13.00 0.00 39.69 4.26
435 436 2.433318 GCACTCGGTCTGGCTGAC 60.433 66.667 15.37 15.37 44.63 3.51
436 437 4.056125 CGCACTCGGTCTGGCTGA 62.056 66.667 0.00 0.00 0.00 4.26
454 455 8.277713 AATTATATAATTGTAACACGACGGTGC 58.722 33.333 17.95 0.00 39.74 5.01
457 458 9.098746 GCAAATTATATAATTGTAACACGACGG 57.901 33.333 19.08 0.00 36.14 4.79
458 459 9.858247 AGCAAATTATATAATTGTAACACGACG 57.142 29.630 19.08 0.00 36.14 5.12
485 486 8.902540 AAAACATAACACTACATCTGAAGACA 57.097 30.769 0.00 0.00 0.00 3.41
548 549 1.024271 CACCACCATATCCAAAGCCG 58.976 55.000 0.00 0.00 0.00 5.52
614 619 0.042131 TGAACTACCCGGATCCACCT 59.958 55.000 13.41 0.00 36.31 4.00
623 628 4.000988 AGTTAACTTGCATGAACTACCCG 58.999 43.478 1.12 0.00 30.45 5.28
668 673 1.464189 GCGTTGATGGAAAGAACGAGC 60.464 52.381 0.00 0.00 44.04 5.03
671 676 1.135972 CAGGCGTTGATGGAAAGAACG 60.136 52.381 0.00 0.00 44.11 3.95
699 704 6.889722 CCTATAACAAGGAGTTTCCATTTCCA 59.110 38.462 0.00 0.00 41.64 3.53
716 721 9.739276 AGAAACTTCAACAATCATCCTATAACA 57.261 29.630 0.00 0.00 0.00 2.41
717 722 9.994432 CAGAAACTTCAACAATCATCCTATAAC 57.006 33.333 0.00 0.00 0.00 1.89
718 723 8.677300 GCAGAAACTTCAACAATCATCCTATAA 58.323 33.333 0.00 0.00 0.00 0.98
719 724 7.283127 GGCAGAAACTTCAACAATCATCCTATA 59.717 37.037 0.00 0.00 0.00 1.31
720 725 6.096001 GGCAGAAACTTCAACAATCATCCTAT 59.904 38.462 0.00 0.00 0.00 2.57
721 726 5.415701 GGCAGAAACTTCAACAATCATCCTA 59.584 40.000 0.00 0.00 0.00 2.94
722 727 4.219288 GGCAGAAACTTCAACAATCATCCT 59.781 41.667 0.00 0.00 0.00 3.24
723 728 4.488879 GGCAGAAACTTCAACAATCATCC 58.511 43.478 0.00 0.00 0.00 3.51
724 729 4.488879 GGGCAGAAACTTCAACAATCATC 58.511 43.478 0.00 0.00 0.00 2.92
725 730 3.259123 GGGGCAGAAACTTCAACAATCAT 59.741 43.478 0.00 0.00 0.00 2.45
729 734 1.342474 TGGGGGCAGAAACTTCAACAA 60.342 47.619 0.00 0.00 0.00 2.83
743 748 1.607801 GCCAAGAAACAGATGGGGGC 61.608 60.000 0.00 0.00 34.71 5.80
744 749 0.972471 GGCCAAGAAACAGATGGGGG 60.972 60.000 0.00 0.00 34.71 5.40
748 753 4.039609 AGAAAAAGGGCCAAGAAACAGATG 59.960 41.667 6.18 0.00 0.00 2.90
847 856 2.171448 CAAGGGGGACAAGAATCGATCT 59.829 50.000 0.00 0.00 41.32 2.75
848 857 2.092914 ACAAGGGGGACAAGAATCGATC 60.093 50.000 0.00 0.00 0.00 3.69
849 858 1.916181 ACAAGGGGGACAAGAATCGAT 59.084 47.619 0.00 0.00 0.00 3.59
850 859 1.358152 ACAAGGGGGACAAGAATCGA 58.642 50.000 0.00 0.00 0.00 3.59
851 860 2.200373 AACAAGGGGGACAAGAATCG 57.800 50.000 0.00 0.00 0.00 3.34
852 861 5.132144 TCCTATAACAAGGGGGACAAGAATC 59.868 44.000 0.00 0.00 37.24 2.52
853 862 5.043762 TCCTATAACAAGGGGGACAAGAAT 58.956 41.667 0.00 0.00 37.24 2.40
854 863 4.440808 TCCTATAACAAGGGGGACAAGAA 58.559 43.478 0.00 0.00 37.24 2.52
855 864 4.083080 TCCTATAACAAGGGGGACAAGA 57.917 45.455 0.00 0.00 37.24 3.02
856 865 4.412199 TCATCCTATAACAAGGGGGACAAG 59.588 45.833 0.00 0.00 37.24 3.16
857 866 4.376223 TCATCCTATAACAAGGGGGACAA 58.624 43.478 0.00 0.00 37.24 3.18
858 867 4.015617 TCATCCTATAACAAGGGGGACA 57.984 45.455 0.00 0.00 37.24 4.02
859 868 4.263506 CCATCATCCTATAACAAGGGGGAC 60.264 50.000 0.00 0.00 37.24 4.46
860 869 3.916349 CCATCATCCTATAACAAGGGGGA 59.084 47.826 0.00 0.00 37.24 4.81
861 870 3.562176 GCCATCATCCTATAACAAGGGGG 60.562 52.174 0.00 0.00 37.24 5.40
862 871 3.331889 AGCCATCATCCTATAACAAGGGG 59.668 47.826 0.00 0.00 37.24 4.79
863 872 4.202503 ACAGCCATCATCCTATAACAAGGG 60.203 45.833 0.00 0.00 37.24 3.95
864 873 4.978099 ACAGCCATCATCCTATAACAAGG 58.022 43.478 0.00 0.00 38.06 3.61
865 874 6.057533 TCAACAGCCATCATCCTATAACAAG 58.942 40.000 0.00 0.00 0.00 3.16
866 875 6.000246 TCAACAGCCATCATCCTATAACAA 58.000 37.500 0.00 0.00 0.00 2.83
867 876 5.628797 TCAACAGCCATCATCCTATAACA 57.371 39.130 0.00 0.00 0.00 2.41
868 877 6.058183 ACTTCAACAGCCATCATCCTATAAC 58.942 40.000 0.00 0.00 0.00 1.89
869 878 6.252599 ACTTCAACAGCCATCATCCTATAA 57.747 37.500 0.00 0.00 0.00 0.98
870 879 5.894298 ACTTCAACAGCCATCATCCTATA 57.106 39.130 0.00 0.00 0.00 1.31
871 880 4.785346 ACTTCAACAGCCATCATCCTAT 57.215 40.909 0.00 0.00 0.00 2.57
872 881 4.574674 AACTTCAACAGCCATCATCCTA 57.425 40.909 0.00 0.00 0.00 2.94
873 882 3.446442 AACTTCAACAGCCATCATCCT 57.554 42.857 0.00 0.00 0.00 3.24
874 883 3.760684 AGAAACTTCAACAGCCATCATCC 59.239 43.478 0.00 0.00 0.00 3.51
875 884 4.730657 CAGAAACTTCAACAGCCATCATC 58.269 43.478 0.00 0.00 0.00 2.92
876 885 3.057033 GCAGAAACTTCAACAGCCATCAT 60.057 43.478 0.00 0.00 0.00 2.45
877 886 2.294233 GCAGAAACTTCAACAGCCATCA 59.706 45.455 0.00 0.00 0.00 3.07
878 887 2.352127 GGCAGAAACTTCAACAGCCATC 60.352 50.000 0.00 0.00 40.29 3.51
879 888 1.615392 GGCAGAAACTTCAACAGCCAT 59.385 47.619 0.00 0.00 40.29 4.40
880 889 1.032014 GGCAGAAACTTCAACAGCCA 58.968 50.000 0.00 0.00 40.29 4.75
881 890 0.315251 GGGCAGAAACTTCAACAGCC 59.685 55.000 0.00 0.00 39.86 4.85
882 891 0.315251 GGGGCAGAAACTTCAACAGC 59.685 55.000 0.00 0.00 0.00 4.40
893 902 1.075601 AGAAACAGATGGGGGCAGAA 58.924 50.000 0.00 0.00 0.00 3.02
900 909 0.040204 AGGGGCAAGAAACAGATGGG 59.960 55.000 0.00 0.00 0.00 4.00
905 914 2.158914 AGCAAAAAGGGGCAAGAAACAG 60.159 45.455 0.00 0.00 0.00 3.16
932 941 3.629087 CCTGCTGAATGAAGGGAATCTT 58.371 45.455 0.00 0.00 37.87 2.40
933 942 2.686118 GCCTGCTGAATGAAGGGAATCT 60.686 50.000 0.00 0.00 42.09 2.40
934 943 1.680207 GCCTGCTGAATGAAGGGAATC 59.320 52.381 0.00 0.00 42.09 2.52
935 944 1.287146 AGCCTGCTGAATGAAGGGAAT 59.713 47.619 0.00 0.00 42.09 3.01
936 945 0.700564 AGCCTGCTGAATGAAGGGAA 59.299 50.000 0.00 0.00 42.09 3.97
937 946 1.583556 TAGCCTGCTGAATGAAGGGA 58.416 50.000 0.97 0.00 42.09 4.20
938 947 2.653234 ATAGCCTGCTGAATGAAGGG 57.347 50.000 0.97 0.00 42.09 3.95
939 948 6.455360 TTTAAATAGCCTGCTGAATGAAGG 57.545 37.500 0.97 0.00 44.80 3.46
940 949 7.486647 ACATTTAAATAGCCTGCTGAATGAAG 58.513 34.615 0.00 0.00 0.00 3.02
956 965 9.466497 TCTATCTTGGCTCTGAAACATTTAAAT 57.534 29.630 0.00 0.00 0.00 1.40
961 970 7.800092 AGTATCTATCTTGGCTCTGAAACATT 58.200 34.615 0.00 0.00 0.00 2.71
993 1037 4.079558 ACCATTATTCCAGCCATCTCTTGT 60.080 41.667 0.00 0.00 0.00 3.16
995 1039 4.166725 TCACCATTATTCCAGCCATCTCTT 59.833 41.667 0.00 0.00 0.00 2.85
1050 1094 3.717294 AGGGTGGCCAGCTTACCG 61.717 66.667 32.43 0.00 35.31 4.02
1398 1442 4.393062 ACATCAAGCTTGTATCTTTCACGG 59.607 41.667 25.19 6.67 0.00 4.94
1489 1535 0.040499 GTTGGGCCCTCCATACCAAA 59.960 55.000 25.70 1.57 46.52 3.28
1509 1555 2.949447 AGCCAACTGACAACCTCATTT 58.051 42.857 0.00 0.00 0.00 2.32
1611 1657 3.964031 ACTCTCCCTTCAGCTTATGGTAG 59.036 47.826 0.00 0.00 0.00 3.18
1629 1675 4.099881 ACAAATGCACCACAATGAAACTCT 59.900 37.500 0.00 0.00 0.00 3.24
1703 1751 0.626382 TTGTCCACACCCAAGTTGGA 59.374 50.000 24.06 0.00 40.96 3.53
1731 1779 6.183360 CGAGAAGAACATTTAACTCGCAATCT 60.183 38.462 0.00 0.00 40.03 2.40
2013 4280 7.770366 ATAATATTCCATGCTGAATTGCTGA 57.230 32.000 3.01 0.00 36.41 4.26
2014 4281 9.917129 TTAATAATATTCCATGCTGAATTGCTG 57.083 29.630 3.01 0.00 36.41 4.41
2016 4283 9.918630 ACTTAATAATATTCCATGCTGAATTGC 57.081 29.630 3.01 0.00 36.41 3.56
2020 4287 8.352201 GCACACTTAATAATATTCCATGCTGAA 58.648 33.333 0.00 0.00 0.00 3.02
2041 4308 5.783111 ACATTATTTTCTGGGAAAGCACAC 58.217 37.500 0.00 0.00 0.00 3.82
2107 5179 1.269174 TGACCGAAACAACATGCCATG 59.731 47.619 2.40 2.40 0.00 3.66
2108 5180 1.269448 GTGACCGAAACAACATGCCAT 59.731 47.619 0.00 0.00 0.00 4.40
2109 5181 0.665835 GTGACCGAAACAACATGCCA 59.334 50.000 0.00 0.00 0.00 4.92
2215 5287 4.285517 ACATCTCTGAGTTGACCTGAACAT 59.714 41.667 19.66 0.00 0.00 2.71
2246 5318 3.368427 CCACCGCACTTCTTGAGAATCTA 60.368 47.826 0.00 0.00 34.92 1.98
2318 5390 2.573462 TCCATTTCTCCTTCTGGTCAGG 59.427 50.000 0.00 0.00 34.23 3.86
2326 5398 6.655003 TCAGTACATGTTTCCATTTCTCCTTC 59.345 38.462 2.30 0.00 0.00 3.46
2371 5443 2.778299 TCCAAGGTGAGATTTGTTCCG 58.222 47.619 0.00 0.00 0.00 4.30
2374 5446 3.565307 TGCTTCCAAGGTGAGATTTGTT 58.435 40.909 0.00 0.00 0.00 2.83
2494 5566 1.098050 GGCTTACCAACTCATGCCTG 58.902 55.000 0.00 0.00 37.58 4.85
2515 5587 4.937201 AATGAAACCTTCAGAAACCCAC 57.063 40.909 0.00 0.00 43.98 4.61
2569 5641 6.712241 AGATCATTGAAATAACCTATCGCG 57.288 37.500 0.00 0.00 0.00 5.87
2576 5648 7.756722 CCTGTTGACAAGATCATTGAAATAACC 59.243 37.037 10.61 0.00 37.11 2.85
2590 5662 4.041567 TGAATAAGGCTCCTGTTGACAAGA 59.958 41.667 0.00 0.00 0.00 3.02
2632 5704 3.084039 GCAAGATTTCACTGACCCATCA 58.916 45.455 0.00 0.00 0.00 3.07
2669 5741 7.819900 AGACTTGTACAAGATAAGATCCAACAC 59.180 37.037 36.14 12.25 40.79 3.32
2717 5789 2.292918 TGGCCTCTGGGTTGTCTACTAT 60.293 50.000 3.32 0.00 34.45 2.12
2750 5822 2.132089 ATCCGACGGGGCTTTGGAAA 62.132 55.000 15.25 0.00 34.94 3.13
2754 5826 3.508840 GCATCCGACGGGGCTTTG 61.509 66.667 15.25 5.77 34.94 2.77
2790 5862 7.834181 ACATACTAACATTCCCTTGCAGTATTT 59.166 33.333 0.00 0.00 31.13 1.40
2799 5871 6.655003 CACTTGTGACATACTAACATTCCCTT 59.345 38.462 0.00 0.00 0.00 3.95
2845 5917 4.534103 AGAGAAGGTATATTCATGGAGCCC 59.466 45.833 0.00 0.00 0.00 5.19
2917 5995 2.320587 GCGGTTGTGGTCAGCAGAG 61.321 63.158 0.00 0.00 0.00 3.35
2926 6004 0.386731 GGTCGATTTTGCGGTTGTGG 60.387 55.000 0.00 0.00 0.00 4.17
2927 6005 0.591170 AGGTCGATTTTGCGGTTGTG 59.409 50.000 0.00 0.00 0.00 3.33
2935 6013 3.753272 ACAATCCTGTCAGGTCGATTTTG 59.247 43.478 18.65 14.37 36.53 2.44
2978 6056 5.586643 TGCAACAGCCACGAATTTGTATATA 59.413 36.000 0.00 0.00 0.00 0.86
2986 6064 1.032014 AGTTGCAACAGCCACGAATT 58.968 45.000 30.11 3.54 0.00 2.17
3010 6088 4.586306 CCCTCTAATTTGGGTTGGTAGT 57.414 45.455 0.00 0.00 38.65 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.