AutoCloner

Multiple sequence alignment - TraesCS2A01G361300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G361300	chr2A	100.000	2846	0	0	1	2846	605211139	605208294	0.000000e+00	5256.0
1	TraesCS2A01G361300	chr2A	95.559	2049	71	7	1	2035	605658672	605656630	0.000000e+00	3262.0
2	TraesCS2A01G361300	chr2A	88.292	1563	134	12	378	1928	605592167	605593692	0.000000e+00	1827.0
3	TraesCS2A01G361300	chr2A	89.041	73	3	3	2751	2818	605599642	605599714	5.050000e-13	86.1
4	TraesCS2A01G361300	chr3A	91.056	1487	122	6	384	1861	727386668	727388152	0.000000e+00	1999.0
5	TraesCS2A01G361300	chr3A	75.604	828	152	28	538	1343	647686933	647686134	5.790000e-97	364.0
6	TraesCS2A01G361300	chr3A	88.660	291	21	7	2560	2846	727389278	727389560	7.550000e-91	344.0
7	TraesCS2A01G361300	chr3A	93.103	116	7	1	70	184	727386539	727386654	4.880000e-38	169.0
8	TraesCS2A01G361300	chr3D	89.720	1537	114	17	406	1928	597289484	597290990	0.000000e+00	1923.0
9	TraesCS2A01G361300	chr3D	78.277	1335	242	27	404	1729	596635631	596636926	0.000000e+00	815.0
10	TraesCS2A01G361300	chr3D	78.675	619	118	10	538	1151	596342382	596342991	1.590000e-107	399.0
11	TraesCS2A01G361300	chr3D	96.078	102	4	0	10	111	597288258	597288359	1.750000e-37	167.0
12	TraesCS2A01G361300	chr3D	93.333	90	5	1	96	184	597289051	597289140	6.400000e-27	132.0
13	TraesCS2A01G361300	chr3D	90.411	73	2	3	2751	2818	597291591	597291663	1.090000e-14	91.6
14	TraesCS2A01G361300	chr3D	97.059	34	0	1	2	34	597289307	597289340	3.960000e-04	56.5
15	TraesCS2A01G361300	chr3B	89.974	758	71	4	1152	1908	804114116	804114869	0.000000e+00	974.0
16	TraesCS2A01G361300	chr3B	77.895	1425	252	35	407	1816	801418376	801417000	0.000000e+00	828.0
17	TraesCS2A01G361300	chr3B	77.483	1470	261	40	366	1816	801101647	801103065	0.000000e+00	817.0
18	TraesCS2A01G361300	chr3B	90.261	575	53	1	391	962	804125360	804125934	0.000000e+00	749.0
19	TraesCS2A01G361300	chr3B	83.333	756	67	22	2074	2818	804126155	804126862	0.000000e+00	643.0
20	TraesCS2A01G361300	chr3B	87.048	525	54	9	2117	2639	804123177	804123689	5.290000e-162	580.0
21	TraesCS2A01G361300	chr3B	94.273	227	12	1	1635	1861	804125930	804126155	2.100000e-91	346.0
22	TraesCS2A01G361300	chr3B	92.737	179	6	4	2	178	804125188	804125361	4.710000e-63	252.0
23	TraesCS2A01G361300	chrUn	77.788	1049	199	21	779	1816	162689618	162690643	1.450000e-172	616.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G361300	chr2A	605208294	605211139	2845	True	5256.000000	5256	100.000000	1	2846	1	chr2A.!!$R1	2845
1	TraesCS2A01G361300	chr2A	605656630	605658672	2042	True	3262.000000	3262	95.559000	1	2035	1	chr2A.!!$R2	2034
2	TraesCS2A01G361300	chr2A	605592167	605593692	1525	False	1827.000000	1827	88.292000	378	1928	1	chr2A.!!$F1	1550
3	TraesCS2A01G361300	chr3A	727386539	727389560	3021	False	837.333333	1999	90.939667	70	2846	3	chr3A.!!$F1	2776
4	TraesCS2A01G361300	chr3A	647686134	647686933	799	True	364.000000	364	75.604000	538	1343	1	chr3A.!!$R1	805
5	TraesCS2A01G361300	chr3D	596635631	596636926	1295	False	815.000000	815	78.277000	404	1729	1	chr3D.!!$F2	1325
6	TraesCS2A01G361300	chr3D	597288258	597291663	3405	False	474.020000	1923	93.320200	2	2818	5	chr3D.!!$F3	2816
7	TraesCS2A01G361300	chr3D	596342382	596342991	609	False	399.000000	399	78.675000	538	1151	1	chr3D.!!$F1	613
8	TraesCS2A01G361300	chr3B	804114116	804114869	753	False	974.000000	974	89.974000	1152	1908	1	chr3B.!!$F2	756
9	TraesCS2A01G361300	chr3B	801417000	801418376	1376	True	828.000000	828	77.895000	407	1816	1	chr3B.!!$R1	1409
10	TraesCS2A01G361300	chr3B	801101647	801103065	1418	False	817.000000	817	77.483000	366	1816	1	chr3B.!!$F1	1450
11	TraesCS2A01G361300	chr3B	804123177	804126862	3685	False	514.000000	749	89.530400	2	2818	5	chr3B.!!$F3	2816
12	TraesCS2A01G361300	chrUn	162689618	162690643	1025	False	616.000000	616	77.788000	779	1816	1	chrUn.!!$F1	1037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
226	2946	2.034558	ACGGAAACAAACAAGCTCATGG	59.965	45.455	0.0	0.0	0.0	3.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2095	5004	0.032267	CTACTAGCTACAAGGCGCCC	59.968	60.0	26.15	6.38	37.29	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
212	2932	3.796178	TCGCACGGTTAATATACGGAAAC	59.204	43.478	0.00	0.00	0.00	2.78
226	2946	2.034558	ACGGAAACAAACAAGCTCATGG	59.965	45.455	0.00	0.00	0.00	3.66
263	2983	5.111293	TCCCTTTTAAATGACGACGATACC	58.889	41.667	0.00	0.00	0.00	2.73
1456	4331	3.440173	GGACAATCGGCTTTTCTTGATGA	59.560	43.478	0.00	0.00	0.00	2.92
1477	4352	7.711772	TGATGAATTGTTGTTTCAAAGCAATCT	59.288	29.630	0.00	0.00	36.72	2.40
1579	4467	6.524933	CGCTAAGATATCTACCATTCGTGAAG	59.475	42.308	5.46	0.00	0.00	3.02
1821	4713	2.572284	GCGGCGTACCTTGTCTCT	59.428	61.111	9.37	0.00	0.00	3.10
1849	4741	4.701765	CCAGATATCCTTCACTTGAGTGG	58.298	47.826	10.97	0.00	45.65	4.00
1851	4743	4.163078	CAGATATCCTTCACTTGAGTGGGT	59.837	45.833	10.97	0.00	45.65	4.51
1862	4754	2.759839	TGAGTGGGTATACCGATGGA	57.240	50.000	15.80	0.00	44.64	3.41
1866	4758	3.231818	AGTGGGTATACCGATGGAAGAG	58.768	50.000	15.80	0.00	44.64	2.85
1875	4768	1.078759	CGATGGAAGAGGTCGCACAC	61.079	60.000	0.00	0.00	0.00	3.82
1896	4789	1.927487	TGGAGTTTGGATGCAGCAAT	58.073	45.000	3.51	0.00	0.00	3.56
1897	4790	2.250031	TGGAGTTTGGATGCAGCAATT	58.750	42.857	3.51	0.00	0.00	2.32
1898	4791	3.429492	TGGAGTTTGGATGCAGCAATTA	58.571	40.909	3.51	0.00	0.00	1.40
1908	4804	3.084536	TGCAGCAATTAATGGGAGACA	57.915	42.857	0.00	0.00	0.00	3.41
1921	4817	2.505407	TGGGAGACAGTTGTATGGGATG	59.495	50.000	0.00	0.00	0.00	3.51
1939	4845	2.456119	GCATTCAGTGGCGGTCGAG	61.456	63.158	0.00	0.00	0.00	4.04
1947	4853	2.029623	AGTGGCGGTCGAGTAATACAT	58.970	47.619	0.00	0.00	0.00	2.29
1996	4905	3.758300	CACGGTTGTGGCATTTATCTTC	58.242	45.455	0.00	0.00	42.59	2.87
1997	4906	3.440173	CACGGTTGTGGCATTTATCTTCT	59.560	43.478	0.00	0.00	42.59	2.85
1998	4907	4.079253	ACGGTTGTGGCATTTATCTTCTT	58.921	39.130	0.00	0.00	0.00	2.52
1999	4908	4.082787	ACGGTTGTGGCATTTATCTTCTTG	60.083	41.667	0.00	0.00	0.00	3.02
2000	4909	4.082787	CGGTTGTGGCATTTATCTTCTTGT	60.083	41.667	0.00	0.00	0.00	3.16
2009	4918	6.346838	GGCATTTATCTTCTTGTTGTGTTTGC	60.347	38.462	0.00	0.00	0.00	3.68
2029	4938	6.546972	TTGCGTTGTACTAAATGACATGAA	57.453	33.333	0.00	0.00	0.00	2.57
2038	4947	9.083080	TGTACTAAATGACATGAATCGTACTTG	57.917	33.333	0.00	0.00	0.00	3.16
2071	4980	9.511272	TTTATTATAGGACTCACTATACAGCGA	57.489	33.333	0.00	0.00	36.06	4.93
2072	4981	6.798315	TTATAGGACTCACTATACAGCGAC	57.202	41.667	0.00	0.00	36.06	5.19
2080	4989	1.951602	ACTATACAGCGACGCCACATA	59.048	47.619	17.79	10.08	0.00	2.29
2083	4992	2.410785	TACAGCGACGCCACATATAC	57.589	50.000	17.79	0.00	0.00	1.47
2086	4995	1.660575	GCGACGCCACATATACGCT	60.661	57.895	9.14	0.00	42.19	5.07
2095	5004	0.959553	ACATATACGCTCTCCCGTGG	59.040	55.000	0.00	0.00	42.15	4.94
2109	5018	4.410400	GTGGGGCGCCTTGTAGCT	62.410	66.667	28.56	0.00	0.00	3.32
2110	5019	2.685743	TGGGGCGCCTTGTAGCTA	60.686	61.111	28.56	2.68	0.00	3.32
2111	5020	2.109181	GGGGCGCCTTGTAGCTAG	59.891	66.667	28.56	0.00	0.00	3.42
2112	5021	2.732619	GGGGCGCCTTGTAGCTAGT	61.733	63.158	28.56	0.00	0.00	2.57
2130	5039	4.081917	GCTAGTAGAACAGAGCAACTCCTT	60.082	45.833	0.00	0.00	34.96	3.36
2132	5041	3.898123	AGTAGAACAGAGCAACTCCTTCA	59.102	43.478	0.00	0.00	0.00	3.02
2163	5073	9.396938	CTTTTTGTTTCAATTTCTTGTTTGCTT	57.603	25.926	0.00	0.00	33.87	3.91
2180	5091	5.906113	TTGCTTTGGTTCAGTCTTAAACA	57.094	34.783	0.00	0.00	0.00	2.83
2272	5189	4.038642	GGTGTTAACCCAAAGCAAAGATCA	59.961	41.667	2.48	0.00	41.04	2.92
2280	5197	6.189859	ACCCAAAGCAAAGATCATTGAGATA	58.810	36.000	14.62	0.00	37.00	1.98
2344	5261	4.378459	GCACACCCGAGTTCTTATTTGAAG	60.378	45.833	0.00	0.00	0.00	3.02
2361	5278	5.652994	TTGAAGTTTTTGTACCTTGCAGT	57.347	34.783	0.00	0.00	0.00	4.40
2373	5290	0.868406	CTTGCAGTTCACTCGGTTCC	59.132	55.000	0.00	0.00	0.00	3.62
2386	5303	0.859232	CGGTTCCAAACAGTGACGAG	59.141	55.000	0.00	0.00	0.00	4.18
2394	5311	1.536943	AACAGTGACGAGCCCCTCTC	61.537	60.000	0.00	0.00	38.47	3.20
2405	5322	3.594134	GAGCCCCTCTCGATGATATTTG	58.406	50.000	0.00	0.00	31.20	2.32
2461	5378	7.364522	TGTATAACAACTGAGCTCATTGTTC	57.635	36.000	34.81	27.24	43.61	3.18
2502	5419	9.959749	TCAAAGACCTTGACATTTAACATTTAC	57.040	29.630	0.00	0.00	39.20	2.01
2511	5428	4.219725	ACATTTAACATTTACCGCCTGCTT	59.780	37.500	0.00	0.00	0.00	3.91
2523	5440	3.730761	CTGCTTGTGCCGTGGCTC	61.731	66.667	12.84	9.28	42.51	4.70
2528	5445	4.641645	TGTGCCGTGGCTCTTGGG	62.642	66.667	12.84	0.00	42.51	4.12
2536	5453	2.360475	GGCTCTTGGGCAGGACAC	60.360	66.667	0.00	0.00	40.53	3.67
2539	5456	1.239968	GCTCTTGGGCAGGACACTTG	61.240	60.000	0.00	0.00	0.00	3.16
2615	6184	2.493035	TCTTGAAGCGTTGATTCTGCA	58.507	42.857	0.00	0.00	0.00	4.41
2617	6186	2.168326	TGAAGCGTTGATTCTGCAGA	57.832	45.000	13.74	13.74	0.00	4.26
2620	6189	2.105006	AGCGTTGATTCTGCAGATGT	57.895	45.000	19.04	9.69	0.00	3.06
2629	6198	6.923199	TGATTCTGCAGATGTCCATATAGA	57.077	37.500	19.04	0.00	0.00	1.98
2638	6207	9.881649	TGCAGATGTCCATATAGATTTCTTATC	57.118	33.333	0.00	0.00	0.00	1.75
2818	6389	4.745125	CACGACACTAACATGTTGAAGTCT	59.255	41.667	21.42	5.20	37.41	3.24
2819	6390	4.745125	ACGACACTAACATGTTGAAGTCTG	59.255	41.667	21.42	18.98	37.41	3.51
2820	6391	4.982295	CGACACTAACATGTTGAAGTCTGA	59.018	41.667	21.42	0.00	36.22	3.27
2821	6392	5.462068	CGACACTAACATGTTGAAGTCTGAA	59.538	40.000	21.42	0.00	36.22	3.02
2822	6393	6.346120	CGACACTAACATGTTGAAGTCTGAAG	60.346	42.308	21.42	9.27	36.22	3.02
2823	6394	6.349300	ACACTAACATGTTGAAGTCTGAAGT	58.651	36.000	21.42	9.91	0.00	3.01
2824	6395	6.480320	ACACTAACATGTTGAAGTCTGAAGTC	59.520	38.462	21.42	0.00	0.00	3.01
2827	6398	5.936686	ACATGTTGAAGTCTGAAGTCATG	57.063	39.130	0.00	0.00	37.83	3.07
2841	6412	3.983044	AGTCATGTACCCCAGAAGAAC	57.017	47.619	0.00	0.00	0.00	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
212	2932	1.444895	GGCGCCATGAGCTTGTTTG	60.445	57.895	24.80	0.00	40.39	2.93
233	2953	0.459899	CATTTAAAAGGGAGGGGCGC	59.540	55.000	0.00	0.00	0.00	6.53
263	2983	1.226746	GGACTTTTGTGGGTCACTCG	58.773	55.000	0.00	0.00	35.11	4.18
1456	4331	7.846644	TTGAGATTGCTTTGAAACAACAATT	57.153	28.000	0.00	0.00	31.40	2.32
1477	4352	8.278729	AGCTTTTTCCACATTTTCATTTTTGA	57.721	26.923	0.00	0.00	0.00	2.69
1579	4467	3.063180	CCAATCTGCTTCATCGACAGAAC	59.937	47.826	6.75	2.30	43.23	3.01
1821	4713	1.412710	GTGAAGGATATCTGGCCGACA	59.587	52.381	2.05	0.00	0.00	4.35
1849	4741	2.228343	CGACCTCTTCCATCGGTATACC	59.772	54.545	12.27	12.27	32.22	2.73
1851	4743	1.884579	GCGACCTCTTCCATCGGTATA	59.115	52.381	0.00	0.00	36.37	1.47
1862	4754	0.036952	CTCCATGTGTGCGACCTCTT	60.037	55.000	0.00	0.00	0.00	2.85
1866	4758	0.238289	CAAACTCCATGTGTGCGACC	59.762	55.000	0.00	0.00	0.00	4.79
1875	4768	1.179152	TGCTGCATCCAAACTCCATG	58.821	50.000	0.00	0.00	0.00	3.66
1896	4789	4.785914	TCCCATACAACTGTCTCCCATTAA	59.214	41.667	0.00	0.00	0.00	1.40
1897	4790	4.367166	TCCCATACAACTGTCTCCCATTA	58.633	43.478	0.00	0.00	0.00	1.90
1898	4791	3.189606	TCCCATACAACTGTCTCCCATT	58.810	45.455	0.00	0.00	0.00	3.16
1908	4804	3.949754	CACTGAATGCATCCCATACAACT	59.050	43.478	0.00	0.00	32.67	3.16
1921	4817	2.434185	TCGACCGCCACTGAATGC	60.434	61.111	0.00	0.00	0.00	3.56
1976	4882	3.686016	AGAAGATAAATGCCACAACCGT	58.314	40.909	0.00	0.00	0.00	4.83
1996	4905	3.753842	AGTACAACGCAAACACAACAAG	58.246	40.909	0.00	0.00	0.00	3.16
1997	4906	3.833545	AGTACAACGCAAACACAACAA	57.166	38.095	0.00	0.00	0.00	2.83
1998	4907	4.941325	TTAGTACAACGCAAACACAACA	57.059	36.364	0.00	0.00	0.00	3.33
1999	4908	5.966503	TCATTTAGTACAACGCAAACACAAC	59.033	36.000	0.00	0.00	0.00	3.32
2000	4909	5.966503	GTCATTTAGTACAACGCAAACACAA	59.033	36.000	0.00	0.00	0.00	3.33
2009	4918	6.989437	ACGATTCATGTCATTTAGTACAACG	58.011	36.000	0.00	0.00	0.00	4.10
2051	4960	3.747010	CGTCGCTGTATAGTGAGTCCTAT	59.253	47.826	2.61	6.44	43.64	2.57
2052	4961	3.129109	CGTCGCTGTATAGTGAGTCCTA	58.871	50.000	2.61	0.00	43.64	2.94
2063	4972	2.667448	CGTATATGTGGCGTCGCTGTAT	60.667	50.000	18.11	10.92	0.00	2.29
2064	4973	1.334329	CGTATATGTGGCGTCGCTGTA	60.334	52.381	18.11	3.74	0.00	2.74
2065	4974	0.594028	CGTATATGTGGCGTCGCTGT	60.594	55.000	18.11	3.48	0.00	4.40
2066	4975	1.876453	GCGTATATGTGGCGTCGCTG	61.876	60.000	18.11	0.00	40.39	5.18
2067	4976	1.660575	GCGTATATGTGGCGTCGCT	60.661	57.895	18.11	0.00	40.39	4.93
2068	4977	1.606350	GAGCGTATATGTGGCGTCGC	61.606	60.000	9.22	9.22	43.16	5.19
2069	4978	0.040336	AGAGCGTATATGTGGCGTCG	60.040	55.000	0.00	0.00	0.00	5.12
2070	4979	1.666311	GGAGAGCGTATATGTGGCGTC	60.666	57.143	0.00	0.00	0.00	5.19
2071	4980	0.314302	GGAGAGCGTATATGTGGCGT	59.686	55.000	0.00	0.00	0.00	5.68
2072	4981	0.388649	GGGAGAGCGTATATGTGGCG	60.389	60.000	0.00	0.00	0.00	5.69
2095	5004	0.032267	CTACTAGCTACAAGGCGCCC	59.968	60.000	26.15	6.38	37.29	6.13
2109	5018	5.077564	TGAAGGAGTTGCTCTGTTCTACTA	58.922	41.667	10.66	0.00	30.45	1.82
2110	5019	3.898123	TGAAGGAGTTGCTCTGTTCTACT	59.102	43.478	10.66	0.00	30.45	2.57
2111	5020	4.258702	TGAAGGAGTTGCTCTGTTCTAC	57.741	45.455	10.66	0.00	30.45	2.59
2112	5021	5.489792	AATGAAGGAGTTGCTCTGTTCTA	57.510	39.130	10.66	2.63	30.45	2.10
2153	5063	4.376340	AGACTGAACCAAAGCAAACAAG	57.624	40.909	0.00	0.00	0.00	3.16
2163	5073	7.870445	GCCAAAATATGTTTAAGACTGAACCAA	59.130	33.333	0.00	0.00	0.00	3.67
2328	5245	9.166126	GGTACAAAAACTTCAAATAAGAACTCG	57.834	33.333	0.00	0.00	0.00	4.18
2344	5261	4.993905	AGTGAACTGCAAGGTACAAAAAC	58.006	39.130	0.00	0.00	39.30	2.43
2361	5278	2.093394	TCACTGTTTGGAACCGAGTGAA	60.093	45.455	9.97	0.00	39.80	3.18
2373	5290	0.951040	GAGGGGCTCGTCACTGTTTG	60.951	60.000	0.25	0.00	0.00	2.93
2386	5303	2.303022	TCCAAATATCATCGAGAGGGGC	59.697	50.000	0.00	0.00	0.00	5.80
2405	5322	9.927668	TTCTTCAGGAATGTTAATCAAAATTCC	57.072	29.630	2.49	2.49	45.62	3.01
2441	5358	4.211164	CACGAACAATGAGCTCAGTTGTTA	59.789	41.667	33.14	12.00	43.74	2.41
2461	5378	3.791887	GTCTTTGACGATGGTAGATCACG	59.208	47.826	0.00	0.00	0.00	4.35
2489	5406	4.370364	AGCAGGCGGTAAATGTTAAATG	57.630	40.909	0.00	0.00	0.00	2.32
2494	5411	1.269448	CACAAGCAGGCGGTAAATGTT	59.731	47.619	0.00	0.00	0.00	2.71
2511	5428	4.641645	CCCAAGAGCCACGGCACA	62.642	66.667	11.35	0.00	44.88	4.57
2521	5438	1.239968	GCAAGTGTCCTGCCCAAGAG	61.240	60.000	0.00	0.00	0.00	2.85
2523	5440	2.620112	CGCAAGTGTCCTGCCCAAG	61.620	63.158	0.00	0.00	0.00	3.61
2539	5456	4.849329	CGACACCGAGGGCTACGC	62.849	72.222	0.00	0.00	38.22	4.42
2551	5468	1.216710	CTGAGAAGGGAGGCGACAC	59.783	63.158	0.00	0.00	0.00	3.67
2620	6189	9.755122	TCCTCTTCGATAAGAAATCTATATGGA	57.245	33.333	0.00	0.00	41.19	3.41
2629	6198	8.754080	TCTTCTCTTTCCTCTTCGATAAGAAAT	58.246	33.333	0.00	0.00	41.19	2.17
2638	6207	4.340950	AGGCTATCTTCTCTTTCCTCTTCG	59.659	45.833	0.00	0.00	0.00	3.79
2818	6389	3.516586	TCTTCTGGGGTACATGACTTCA	58.483	45.455	0.00	0.00	0.00	3.02
2819	6390	4.020128	AGTTCTTCTGGGGTACATGACTTC	60.020	45.833	0.00	0.00	0.00	3.01
2820	6391	3.910627	AGTTCTTCTGGGGTACATGACTT	59.089	43.478	0.00	0.00	0.00	3.01
2821	6392	3.521727	AGTTCTTCTGGGGTACATGACT	58.478	45.455	0.00	0.00	0.00	3.41
2822	6393	3.983044	AGTTCTTCTGGGGTACATGAC	57.017	47.619	0.00	0.00	0.00	3.06

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.