Multiple sequence alignment - TraesCS2A01G360500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G360500 chr2A 100.000 6858 0 0 1 6858 604866276 604859419 0.000000e+00 12665.0
1 TraesCS2A01G360500 chr2A 93.333 105 7 0 3485 3589 676184541 676184645 9.210000e-34 156.0
2 TraesCS2A01G360500 chr2A 93.396 106 5 2 5526 5630 678362931 678363035 9.210000e-34 156.0
3 TraesCS2A01G360500 chr2B 90.534 1574 99 18 2 1545 542922699 542921146 0.000000e+00 2036.0
4 TraesCS2A01G360500 chr2B 96.733 704 14 8 1545 2246 542921051 542920355 0.000000e+00 1164.0
5 TraesCS2A01G360500 chr2B 86.516 1016 74 23 5215 6210 542917331 542916359 0.000000e+00 1059.0
6 TraesCS2A01G360500 chr2B 94.745 666 32 3 2708 3370 542919704 542919039 0.000000e+00 1033.0
7 TraesCS2A01G360500 chr2B 93.911 427 18 4 4187 4613 542918214 542917796 7.500000e-179 638.0
8 TraesCS2A01G360500 chr2B 94.250 400 18 2 2311 2709 542920358 542919963 2.120000e-169 606.0
9 TraesCS2A01G360500 chr2B 93.581 296 16 3 3875 4170 542918492 542918200 8.170000e-119 438.0
10 TraesCS2A01G360500 chr2B 93.000 300 18 1 3598 3894 542918814 542918515 1.060000e-117 435.0
11 TraesCS2A01G360500 chr2B 89.510 286 24 4 4877 5161 542917625 542917345 2.350000e-94 357.0
12 TraesCS2A01G360500 chr2B 91.538 130 11 0 3367 3496 542918940 542918811 5.460000e-41 180.0
13 TraesCS2A01G360500 chr2B 94.545 110 4 1 4639 4748 542917802 542917695 1.180000e-37 169.0
14 TraesCS2A01G360500 chr2B 92.473 93 7 0 6229 6321 542916371 542916279 4.320000e-27 134.0
15 TraesCS2A01G360500 chr2D 94.636 988 43 6 2389 3370 461087277 461086294 0.000000e+00 1522.0
16 TraesCS2A01G360500 chr2D 84.569 985 90 31 5260 6210 461083711 461082755 0.000000e+00 920.0
17 TraesCS2A01G360500 chr2D 88.487 747 42 13 1 732 461094373 461093656 0.000000e+00 863.0
18 TraesCS2A01G360500 chr2D 94.937 474 18 6 1927 2397 461088016 461087546 0.000000e+00 737.0
19 TraesCS2A01G360500 chr2D 87.742 620 61 12 903 1516 461093485 461092875 0.000000e+00 710.0
20 TraesCS2A01G360500 chr2D 96.419 391 13 1 1545 1935 461092813 461092424 1.610000e-180 643.0
21 TraesCS2A01G360500 chr2D 92.898 352 19 4 4311 4661 461084505 461084159 2.210000e-139 507.0
22 TraesCS2A01G360500 chr2D 93.103 261 17 1 4910 5169 461084011 461083751 1.400000e-101 381.0
23 TraesCS2A01G360500 chr2D 91.971 274 19 1 3614 3884 461086108 461085835 1.400000e-101 381.0
24 TraesCS2A01G360500 chr2D 96.104 231 8 1 3869 4099 461084833 461084604 6.490000e-100 375.0
25 TraesCS2A01G360500 chr2D 95.455 154 6 1 1740 1893 619541159 619541007 1.910000e-60 244.0
26 TraesCS2A01G360500 chr2D 95.238 105 4 1 3492 3596 593274242 593274345 1.530000e-36 165.0
27 TraesCS2A01G360500 chr2D 92.632 95 7 0 6227 6321 461082769 461082675 3.340000e-28 137.0
28 TraesCS2A01G360500 chr2D 94.737 76 4 0 3367 3442 461086195 461086120 1.210000e-22 119.0
29 TraesCS2A01G360500 chr2D 91.566 83 5 1 4684 4766 461084160 461084080 5.620000e-21 113.0
30 TraesCS2A01G360500 chr2D 85.321 109 11 5 3409 3512 619538477 619538369 2.620000e-19 108.0
31 TraesCS2A01G360500 chr3A 94.094 508 26 2 6351 6858 655668242 655667739 0.000000e+00 769.0
32 TraesCS2A01G360500 chr6A 93.654 520 18 3 6351 6858 464979208 464978692 0.000000e+00 763.0
33 TraesCS2A01G360500 chr6A 96.842 95 3 0 5523 5617 538097737 538097831 7.120000e-35 159.0
34 TraesCS2A01G360500 chr3B 93.307 508 31 2 6351 6858 79978629 79978125 0.000000e+00 747.0
35 TraesCS2A01G360500 chr3B 88.347 369 32 4 6490 6855 25365964 25366324 3.800000e-117 433.0
36 TraesCS2A01G360500 chr3B 96.000 100 3 1 5529 5627 521797859 521797760 1.980000e-35 161.0
37 TraesCS2A01G360500 chr7B 92.717 508 30 4 6351 6858 372040164 372040664 0.000000e+00 726.0
38 TraesCS2A01G360500 chr7B 92.717 508 25 7 6351 6858 51059856 51059361 0.000000e+00 723.0
39 TraesCS2A01G360500 chr7B 96.000 75 2 1 1740 1814 15369165 15369238 3.360000e-23 121.0
40 TraesCS2A01G360500 chr1B 92.520 508 35 2 6351 6858 274853198 274853702 0.000000e+00 725.0
41 TraesCS2A01G360500 chr1B 91.667 72 5 1 1141 1211 75076106 75076177 1.570000e-16 99.0
42 TraesCS2A01G360500 chr1B 100.000 39 0 0 301 339 269208685 269208647 9.540000e-09 73.1
43 TraesCS2A01G360500 chr4A 92.549 510 25 3 6349 6858 14838483 14838979 0.000000e+00 719.0
44 TraesCS2A01G360500 chr4A 93.396 106 5 2 5513 5617 690621660 690621556 9.210000e-34 156.0
45 TraesCS2A01G360500 chr4A 90.598 117 9 2 3474 3589 679975741 679975856 3.310000e-33 154.0
46 TraesCS2A01G360500 chr4A 91.150 113 8 2 5530 5642 598724542 598724432 1.190000e-32 152.0
47 TraesCS2A01G360500 chr4A 97.143 35 1 0 3598 3632 6268862 6268828 7.430000e-05 60.2
48 TraesCS2A01G360500 chr7D 90.448 513 36 9 6352 6855 587889145 587889653 0.000000e+00 664.0
49 TraesCS2A01G360500 chr5B 88.932 515 37 9 6344 6858 403752170 403752664 9.770000e-173 617.0
50 TraesCS2A01G360500 chr5B 94.340 106 4 1 3485 3590 539328155 539328258 1.980000e-35 161.0
51 TraesCS2A01G360500 chr3D 96.104 154 5 1 1740 1893 152560833 152560985 4.110000e-62 250.0
52 TraesCS2A01G360500 chr7A 91.724 145 11 1 1746 1890 125988620 125988763 4.190000e-47 200.0
53 TraesCS2A01G360500 chr7A 89.600 125 8 3 3474 3593 663553521 663553645 3.310000e-33 154.0
54 TraesCS2A01G360500 chrUn 95.283 106 4 1 3487 3592 305213127 305213231 4.250000e-37 167.0
55 TraesCS2A01G360500 chr1D 96.040 101 4 0 3492 3592 174151173 174151273 1.530000e-36 165.0
56 TraesCS2A01G360500 chr6D 96.875 96 3 0 5523 5618 296196911 296197006 1.980000e-35 161.0
57 TraesCS2A01G360500 chr5D 94.231 104 6 0 3489 3592 302514351 302514454 7.120000e-35 159.0
58 TraesCS2A01G360500 chr5D 90.517 116 8 3 3476 3589 462455332 462455218 4.280000e-32 150.0
59 TraesCS2A01G360500 chr5D 93.421 76 3 2 1740 1814 35145497 35145571 2.020000e-20 111.0
60 TraesCS2A01G360500 chr4D 91.228 114 8 2 5529 5642 4772220 4772109 3.310000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G360500 chr2A 604859419 604866276 6857 True 12665.000000 12665 100.000000 1 6858 1 chr2A.!!$R1 6857
1 TraesCS2A01G360500 chr2B 542916279 542922699 6420 True 687.416667 2036 92.611333 2 6321 12 chr2B.!!$R1 6319
2 TraesCS2A01G360500 chr2D 461092424 461094373 1949 True 738.666667 863 90.882667 1 1935 3 chr2D.!!$R2 1934
3 TraesCS2A01G360500 chr2D 461082675 461088016 5341 True 519.200000 1522 92.715300 1927 6321 10 chr2D.!!$R1 4394
4 TraesCS2A01G360500 chr3A 655667739 655668242 503 True 769.000000 769 94.094000 6351 6858 1 chr3A.!!$R1 507
5 TraesCS2A01G360500 chr6A 464978692 464979208 516 True 763.000000 763 93.654000 6351 6858 1 chr6A.!!$R1 507
6 TraesCS2A01G360500 chr3B 79978125 79978629 504 True 747.000000 747 93.307000 6351 6858 1 chr3B.!!$R1 507
7 TraesCS2A01G360500 chr7B 372040164 372040664 500 False 726.000000 726 92.717000 6351 6858 1 chr7B.!!$F2 507
8 TraesCS2A01G360500 chr1B 274853198 274853702 504 False 725.000000 725 92.520000 6351 6858 1 chr1B.!!$F2 507
9 TraesCS2A01G360500 chr7D 587889145 587889653 508 False 664.000000 664 90.448000 6352 6855 1 chr7D.!!$F1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 412 0.100861 GGTTTCGTTCGGGCAACAAA 59.899 50.0 0.0 0.0 34.20 2.83 F
410 414 0.809385 TTTCGTTCGGGCAACAAACA 59.191 45.0 0.0 0.0 34.20 2.83 F
1814 1984 0.038251 CTCTGCTCACTTGCGTGGTA 60.038 55.0 0.0 0.0 41.53 3.25 F
2896 3607 1.448985 TAAACGTTGGATGCCAGCTC 58.551 50.0 0.0 0.0 33.81 4.09 F
3600 4522 0.328258 AGGGAGTACATTGGTGTGCC 59.672 55.0 0.0 0.0 41.28 5.01 F
4876 6819 0.395312 GAAGAACCCACTCCCGTTCA 59.605 55.0 0.0 0.0 40.69 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1984 1.203052 GCAGCAACTACAATGTGGCAT 59.797 47.619 0.00 0.0 39.25 4.40 R
1957 2127 4.404073 ACCTTTGCAATGGTACACTGAAAA 59.596 37.500 29.98 0.0 41.14 2.29 R
3587 4509 0.110295 AGCACAGGCACACCAATGTA 59.890 50.000 0.00 0.0 44.61 2.29 R
4868 6811 0.109532 TTGCATGACCTTGAACGGGA 59.890 50.000 0.00 0.0 0.00 5.14 R
5018 6966 0.107654 GACATCCTCTTCCAACCGGG 60.108 60.000 6.32 0.0 38.37 5.73 R
6218 8211 0.034896 GAAACGTTCTCTGCCCCTCA 59.965 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.392193 CAACGGCTGAGCTCTTCCAT 60.392 55.000 16.19 1.14 0.00 3.41
58 59 1.449246 GCTGAGCTCTTCCATGCGT 60.449 57.895 16.19 0.00 0.00 5.24
68 69 2.171237 TCTTCCATGCGTGAGATCCAAT 59.829 45.455 7.72 0.00 0.00 3.16
70 71 1.485895 TCCATGCGTGAGATCCAATGA 59.514 47.619 7.72 0.00 0.00 2.57
132 133 2.231721 GTCTAATCTCTATGGGCGTCCC 59.768 54.545 2.12 5.67 45.71 4.46
167 168 7.265599 TGATTCTTGTTTCTGGATAAGGGTA 57.734 36.000 0.00 0.00 0.00 3.69
173 174 4.196971 GTTTCTGGATAAGGGTATGCGTT 58.803 43.478 0.00 0.00 30.91 4.84
178 179 2.032924 GGATAAGGGTATGCGTTTGTGC 59.967 50.000 0.00 0.00 0.00 4.57
209 210 6.937436 AAAAAGTAGAAGAAACATCGTGGT 57.063 33.333 0.00 0.00 0.00 4.16
212 213 5.717078 AGTAGAAGAAACATCGTGGTGTA 57.283 39.130 0.00 0.00 0.00 2.90
254 255 3.264947 CTTCATCAAATCTCGAGTGCCA 58.735 45.455 13.13 0.00 0.00 4.92
296 300 7.110155 ACTAATATTCGTTCACCAAACCTCAT 58.890 34.615 0.00 0.00 34.11 2.90
297 301 5.818136 ATATTCGTTCACCAAACCTCATG 57.182 39.130 0.00 0.00 34.11 3.07
298 302 2.920724 TCGTTCACCAAACCTCATGA 57.079 45.000 0.00 0.00 34.11 3.07
299 303 3.201353 TCGTTCACCAAACCTCATGAA 57.799 42.857 0.00 0.00 34.11 2.57
300 304 3.546724 TCGTTCACCAAACCTCATGAAA 58.453 40.909 0.00 0.00 33.09 2.69
301 305 4.141287 TCGTTCACCAAACCTCATGAAAT 58.859 39.130 0.00 0.00 33.09 2.17
347 351 2.649531 TCCCAAACGAGTGAACCAAT 57.350 45.000 0.00 0.00 0.00 3.16
354 358 4.823790 AACGAGTGAACCAATACCAAAC 57.176 40.909 0.00 0.00 0.00 2.93
368 372 1.900486 ACCAAACCACGGGAAACAAAA 59.100 42.857 0.00 0.00 0.00 2.44
407 411 1.030488 TGGTTTCGTTCGGGCAACAA 61.030 50.000 0.00 0.00 34.20 2.83
408 412 0.100861 GGTTTCGTTCGGGCAACAAA 59.899 50.000 0.00 0.00 34.20 2.83
409 413 1.193644 GTTTCGTTCGGGCAACAAAC 58.806 50.000 0.00 0.00 34.20 2.93
410 414 0.809385 TTTCGTTCGGGCAACAAACA 59.191 45.000 0.00 0.00 34.20 2.83
447 452 4.856509 ACTTCCTTACATTAGCCCCTTTC 58.143 43.478 0.00 0.00 0.00 2.62
781 797 1.529865 GTTTTAAAGAGGCACGCGTCT 59.470 47.619 9.86 3.85 42.14 4.18
922 976 4.163268 AGTCCTGCTCCTTCTTCCTTTATC 59.837 45.833 0.00 0.00 0.00 1.75
1009 1063 1.871676 CTCATCGATCCATGGCTTGTG 59.128 52.381 6.96 3.22 0.00 3.33
1044 1102 2.673862 TCGACTCGAGCTTAGTGAGAAG 59.326 50.000 13.61 4.24 33.93 2.85
1045 1103 2.673862 CGACTCGAGCTTAGTGAGAAGA 59.326 50.000 13.61 0.00 33.93 2.87
1054 1113 4.457257 AGCTTAGTGAGAAGACCATTTTGC 59.543 41.667 0.00 0.00 0.00 3.68
1086 1145 2.173669 CAGCGGCATTGGGTCTACG 61.174 63.158 1.45 0.00 0.00 3.51
1113 1179 4.872691 GGGGATATGATCAAGATACAAGCG 59.127 45.833 0.00 0.00 0.00 4.68
1156 1222 2.408022 CGTACGAGGCGAGGAAGG 59.592 66.667 10.44 0.00 0.00 3.46
1312 1378 2.997986 CAAACCTTCTGCATTTGCCATC 59.002 45.455 0.00 0.00 41.18 3.51
1337 1403 3.243877 CGATGGACGACACATTCTGAATC 59.756 47.826 0.00 0.00 45.77 2.52
1355 1421 1.620822 TCTGCTGTGCTCTGTACTGA 58.379 50.000 2.21 2.21 0.00 3.41
1420 1486 1.657751 GGGACTCCAAATGCTTCCGC 61.658 60.000 0.00 0.00 0.00 5.54
1445 1511 3.400054 GGGTGCTCCGGGTTAGCT 61.400 66.667 14.12 0.00 40.73 3.32
1456 1522 0.888619 GGGTTAGCTTGGGTTGCTTC 59.111 55.000 0.00 0.00 41.46 3.86
1477 1543 6.369615 GCTTCGTATCCTTGGTTTAAACTACA 59.630 38.462 17.50 5.81 0.00 2.74
1481 1547 7.933033 TCGTATCCTTGGTTTAAACTACAAAGT 59.067 33.333 17.50 6.28 37.65 2.66
1516 1582 6.405538 TCTTTTGTTTTGCACCTGAATTTCT 58.594 32.000 0.00 0.00 0.00 2.52
1519 1585 2.802247 GTTTTGCACCTGAATTTCTGGC 59.198 45.455 19.08 9.15 38.86 4.85
1541 1607 2.119801 CAGTCTGCATACTGCCCTTT 57.880 50.000 18.03 0.00 44.23 3.11
1542 1608 1.741706 CAGTCTGCATACTGCCCTTTG 59.258 52.381 18.03 0.00 44.23 2.77
1543 1609 1.630369 AGTCTGCATACTGCCCTTTGA 59.370 47.619 3.60 0.00 44.23 2.69
1776 1946 0.981183 TCGGCCCATAACTGTCACTT 59.019 50.000 0.00 0.00 0.00 3.16
1780 1950 3.618997 CGGCCCATAACTGTCACTTAGTT 60.619 47.826 0.00 0.00 41.06 2.24
1814 1984 0.038251 CTCTGCTCACTTGCGTGGTA 60.038 55.000 0.00 0.00 41.53 3.25
1847 2017 2.295349 AGTTGCTGCAAAGAGTGAATGG 59.705 45.455 17.80 0.00 0.00 3.16
1957 2127 6.642707 TCACCCAAAATAAGTTCATTTCGT 57.357 33.333 0.00 0.00 0.00 3.85
2376 2548 7.913297 GTCAGAGACTCAGAGTGTTATAATGAC 59.087 40.741 8.15 10.53 0.00 3.06
2387 2559 6.731467 AGTGTTATAATGACCCCATTTCACT 58.269 36.000 0.00 0.00 42.56 3.41
2491 2941 5.021033 AGAGGCTATGATTCAAGTGTCAG 57.979 43.478 0.00 0.00 0.00 3.51
2560 3011 7.718272 ATGAAAACATGACATGAAAACCAAG 57.282 32.000 22.19 0.00 0.00 3.61
2655 3106 7.449247 GCTGAAGAAATCTACTCCATATCCTT 58.551 38.462 0.00 0.00 0.00 3.36
2740 3451 7.428020 TGAGATTTGAGAAGTTTCAACCATTG 58.572 34.615 0.00 0.00 36.84 2.82
2838 3549 6.678568 TCCTCCAGGATATTTCTCATTCTC 57.321 41.667 0.00 0.00 39.78 2.87
2894 3605 2.529151 CAATAAACGTTGGATGCCAGC 58.471 47.619 0.00 0.00 33.81 4.85
2896 3607 1.448985 TAAACGTTGGATGCCAGCTC 58.551 50.000 0.00 0.00 33.81 4.09
2952 3664 4.743151 CGCTCGGACATTTAATTAGCTGTA 59.257 41.667 0.00 0.00 0.00 2.74
3105 3819 5.221185 GCCGGAATCCTCGTGCTATATATTA 60.221 44.000 5.05 0.00 0.00 0.98
3194 3908 2.022764 TAATGATGGCGGTGTCACTG 57.977 50.000 7.49 7.49 0.00 3.66
3281 3996 5.623169 ACAGTATTCAACCGGGAACTTTTA 58.377 37.500 6.32 0.00 0.00 1.52
3415 4337 3.449737 ACTTTGGGGCAAATGATCAGATG 59.550 43.478 0.09 3.81 32.70 2.90
3427 4349 3.784178 TGATCAGATGTCTCCCCTATCC 58.216 50.000 0.00 0.00 0.00 2.59
3432 4354 2.732507 AGATGTCTCCCCTATCCCATCT 59.267 50.000 0.00 0.00 35.44 2.90
3468 4390 7.177041 ACCACTCTAGAAACCTACTAAGTTCAG 59.823 40.741 0.00 0.00 0.00 3.02
3489 4411 6.916440 TCAGAACAACAGATCATTCCAATTG 58.084 36.000 0.00 0.00 0.00 2.32
3492 4414 8.464404 CAGAACAACAGATCATTCCAATTGTAT 58.536 33.333 4.43 0.00 0.00 2.29
3493 4415 9.685276 AGAACAACAGATCATTCCAATTGTATA 57.315 29.630 4.43 0.00 0.00 1.47
3494 4416 9.722056 GAACAACAGATCATTCCAATTGTATAC 57.278 33.333 4.43 0.00 0.00 1.47
3495 4417 9.466497 AACAACAGATCATTCCAATTGTATACT 57.534 29.630 4.43 0.00 0.00 2.12
3496 4418 9.113838 ACAACAGATCATTCCAATTGTATACTC 57.886 33.333 4.43 0.00 0.00 2.59
3497 4419 9.334947 CAACAGATCATTCCAATTGTATACTCT 57.665 33.333 4.43 1.35 0.00 3.24
3498 4420 9.553064 AACAGATCATTCCAATTGTATACTCTC 57.447 33.333 4.43 0.00 0.00 3.20
3499 4421 8.932610 ACAGATCATTCCAATTGTATACTCTCT 58.067 33.333 4.43 0.00 0.00 3.10
3500 4422 9.421806 CAGATCATTCCAATTGTATACTCTCTC 57.578 37.037 4.43 0.00 0.00 3.20
3501 4423 8.592809 AGATCATTCCAATTGTATACTCTCTCC 58.407 37.037 4.43 0.00 0.00 3.71
3502 4424 6.749139 TCATTCCAATTGTATACTCTCTCCG 58.251 40.000 4.43 0.00 0.00 4.63
3503 4425 6.323996 TCATTCCAATTGTATACTCTCTCCGT 59.676 38.462 4.43 0.00 0.00 4.69
3504 4426 6.540438 TTCCAATTGTATACTCTCTCCGTT 57.460 37.500 4.43 0.00 0.00 4.44
3505 4427 6.145338 TCCAATTGTATACTCTCTCCGTTC 57.855 41.667 4.43 0.00 0.00 3.95
3506 4428 5.892119 TCCAATTGTATACTCTCTCCGTTCT 59.108 40.000 4.43 0.00 0.00 3.01
3507 4429 7.058525 TCCAATTGTATACTCTCTCCGTTCTA 58.941 38.462 4.43 0.00 0.00 2.10
3508 4430 7.558807 TCCAATTGTATACTCTCTCCGTTCTAA 59.441 37.037 4.43 0.00 0.00 2.10
3509 4431 8.195436 CCAATTGTATACTCTCTCCGTTCTAAA 58.805 37.037 4.43 0.00 0.00 1.85
3510 4432 9.582431 CAATTGTATACTCTCTCCGTTCTAAAA 57.418 33.333 4.17 0.00 0.00 1.52
3514 4436 9.842775 TGTATACTCTCTCCGTTCTAAAATAGA 57.157 33.333 4.17 0.00 0.00 1.98
3517 4439 7.883391 ACTCTCTCCGTTCTAAAATAGATGA 57.117 36.000 0.00 0.00 34.22 2.92
3518 4440 7.708998 ACTCTCTCCGTTCTAAAATAGATGAC 58.291 38.462 0.00 0.00 34.22 3.06
3519 4441 7.558444 ACTCTCTCCGTTCTAAAATAGATGACT 59.442 37.037 0.00 0.00 34.22 3.41
3520 4442 7.932335 TCTCTCCGTTCTAAAATAGATGACTC 58.068 38.462 0.00 0.00 34.22 3.36
3521 4443 7.556635 TCTCTCCGTTCTAAAATAGATGACTCA 59.443 37.037 0.00 0.00 34.22 3.41
3522 4444 8.063200 TCTCCGTTCTAAAATAGATGACTCAA 57.937 34.615 0.00 0.00 34.22 3.02
3523 4445 7.974501 TCTCCGTTCTAAAATAGATGACTCAAC 59.025 37.037 0.00 0.00 34.22 3.18
3524 4446 7.837863 TCCGTTCTAAAATAGATGACTCAACT 58.162 34.615 0.00 0.00 34.22 3.16
3525 4447 8.311836 TCCGTTCTAAAATAGATGACTCAACTT 58.688 33.333 0.00 0.00 34.22 2.66
3526 4448 8.936864 CCGTTCTAAAATAGATGACTCAACTTT 58.063 33.333 0.00 0.00 34.22 2.66
3527 4449 9.746711 CGTTCTAAAATAGATGACTCAACTTTG 57.253 33.333 0.00 0.00 34.22 2.77
3564 4486 9.716531 AGTACAAAGTTAGTATAAAGTTGGGTC 57.283 33.333 0.00 0.00 0.00 4.46
3565 4487 9.492973 GTACAAAGTTAGTATAAAGTTGGGTCA 57.507 33.333 0.00 0.00 0.00 4.02
3567 4489 9.227777 ACAAAGTTAGTATAAAGTTGGGTCATC 57.772 33.333 0.00 0.00 0.00 2.92
3568 4490 9.449719 CAAAGTTAGTATAAAGTTGGGTCATCT 57.550 33.333 0.00 0.00 0.00 2.90
3575 4497 8.432805 AGTATAAAGTTGGGTCATCTATTCTGG 58.567 37.037 0.00 0.00 0.00 3.86
3576 4498 5.779241 AAAGTTGGGTCATCTATTCTGGA 57.221 39.130 0.00 0.00 0.00 3.86
3577 4499 5.779241 AAGTTGGGTCATCTATTCTGGAA 57.221 39.130 0.00 0.00 0.00 3.53
3578 4500 5.104259 AGTTGGGTCATCTATTCTGGAAC 57.896 43.478 0.00 0.00 0.00 3.62
3579 4501 4.536090 AGTTGGGTCATCTATTCTGGAACA 59.464 41.667 0.00 0.00 0.00 3.18
3593 4515 3.981071 TGGAACAGAGGGAGTACATTG 57.019 47.619 0.00 0.00 0.00 2.82
3594 4516 2.571653 TGGAACAGAGGGAGTACATTGG 59.428 50.000 0.00 0.00 0.00 3.16
3595 4517 2.572104 GGAACAGAGGGAGTACATTGGT 59.428 50.000 0.00 0.00 0.00 3.67
3596 4518 3.600388 GAACAGAGGGAGTACATTGGTG 58.400 50.000 0.00 0.00 0.00 4.17
3600 4522 0.328258 AGGGAGTACATTGGTGTGCC 59.672 55.000 0.00 0.00 41.28 5.01
3688 4610 5.239087 TGTTTAACCGATACCCAAAACTGTC 59.761 40.000 0.00 0.00 0.00 3.51
3702 4627 1.301244 CTGTCCGTGCTCACTTGCT 60.301 57.895 0.00 0.00 0.00 3.91
3720 4645 2.158928 TGCTTTGCATTGCTTCAACCTT 60.159 40.909 10.49 0.00 31.71 3.50
3729 4654 6.152492 TGCATTGCTTCAACCTTCATAATGTA 59.848 34.615 10.49 0.00 0.00 2.29
3769 4694 7.915508 ACTTTGTTTGCTAAAAAGGTTAATGC 58.084 30.769 14.58 0.00 35.64 3.56
3782 4707 3.071167 AGGTTAATGCGGGTCTTCTATCC 59.929 47.826 0.00 0.00 0.00 2.59
3848 4773 8.924303 TCTGCACTACACAGGTATTATCTTATT 58.076 33.333 0.00 0.00 35.78 1.40
4067 6009 8.108378 TGGGAGATTATTGTACCCTGAAATTA 57.892 34.615 0.00 0.00 40.98 1.40
4092 6034 5.689961 GCACCGAAATTTCACTGTACATTTT 59.310 36.000 17.99 0.00 0.00 1.82
4117 6059 4.002982 TGGTGTCAAGATTGAAGATTCCG 58.997 43.478 0.00 0.00 39.21 4.30
4133 6075 1.142748 CCGAGCCTGCTCCACTAAG 59.857 63.158 13.23 0.00 39.77 2.18
4134 6076 1.323271 CCGAGCCTGCTCCACTAAGA 61.323 60.000 13.23 0.00 39.77 2.10
4137 6079 2.351455 GAGCCTGCTCCACTAAGAAAC 58.649 52.381 7.95 0.00 37.11 2.78
4144 6086 5.474876 CCTGCTCCACTAAGAAACAAAGATT 59.525 40.000 0.00 0.00 0.00 2.40
4159 6101 1.260544 AGATTCCCAGCCTGCAAAAC 58.739 50.000 0.00 0.00 0.00 2.43
4161 6103 2.041620 AGATTCCCAGCCTGCAAAACTA 59.958 45.455 0.00 0.00 0.00 2.24
4162 6104 1.909700 TTCCCAGCCTGCAAAACTAG 58.090 50.000 0.00 0.00 0.00 2.57
4163 6105 1.064003 TCCCAGCCTGCAAAACTAGA 58.936 50.000 0.00 0.00 0.00 2.43
4164 6106 1.168714 CCCAGCCTGCAAAACTAGAC 58.831 55.000 0.00 0.00 0.00 2.59
4165 6107 1.168714 CCAGCCTGCAAAACTAGACC 58.831 55.000 0.00 0.00 0.00 3.85
4166 6108 1.545428 CCAGCCTGCAAAACTAGACCA 60.545 52.381 0.00 0.00 0.00 4.02
4167 6109 1.537202 CAGCCTGCAAAACTAGACCAC 59.463 52.381 0.00 0.00 0.00 4.16
4168 6110 0.881796 GCCTGCAAAACTAGACCACC 59.118 55.000 0.00 0.00 0.00 4.61
4169 6111 1.545651 GCCTGCAAAACTAGACCACCT 60.546 52.381 0.00 0.00 0.00 4.00
4170 6112 2.427506 CCTGCAAAACTAGACCACCTC 58.572 52.381 0.00 0.00 0.00 3.85
4171 6113 2.427506 CTGCAAAACTAGACCACCTCC 58.572 52.381 0.00 0.00 0.00 4.30
4172 6114 2.039084 CTGCAAAACTAGACCACCTCCT 59.961 50.000 0.00 0.00 0.00 3.69
4173 6115 2.441750 TGCAAAACTAGACCACCTCCTT 59.558 45.455 0.00 0.00 0.00 3.36
4174 6116 3.117663 TGCAAAACTAGACCACCTCCTTT 60.118 43.478 0.00 0.00 0.00 3.11
4175 6117 3.889538 GCAAAACTAGACCACCTCCTTTT 59.110 43.478 0.00 0.00 0.00 2.27
4176 6118 4.023107 GCAAAACTAGACCACCTCCTTTTC 60.023 45.833 0.00 0.00 0.00 2.29
4177 6119 4.368565 AAACTAGACCACCTCCTTTTCC 57.631 45.455 0.00 0.00 0.00 3.13
4178 6120 2.986050 ACTAGACCACCTCCTTTTCCA 58.014 47.619 0.00 0.00 0.00 3.53
4179 6121 3.323775 ACTAGACCACCTCCTTTTCCAA 58.676 45.455 0.00 0.00 0.00 3.53
4180 6122 3.720002 ACTAGACCACCTCCTTTTCCAAA 59.280 43.478 0.00 0.00 0.00 3.28
4181 6123 3.680777 AGACCACCTCCTTTTCCAAAA 57.319 42.857 0.00 0.00 0.00 2.44
4182 6124 3.989056 AGACCACCTCCTTTTCCAAAAA 58.011 40.909 0.00 0.00 0.00 1.94
4224 6166 2.166459 CGCCTCACCTGAACTAATGAGA 59.834 50.000 1.71 0.00 40.92 3.27
4260 6202 3.139077 CAGCTTTATTAAGGGCCTACCG 58.861 50.000 6.41 0.00 46.96 4.02
4278 6220 0.719465 CGCAACTATGTCGGTGGTTC 59.281 55.000 0.00 0.00 0.00 3.62
4301 6243 9.973450 GTTCAGTCATACACATATCTTAGTGAT 57.027 33.333 0.00 0.00 39.03 3.06
4303 6245 8.084684 TCAGTCATACACATATCTTAGTGATGC 58.915 37.037 0.00 0.00 39.03 3.91
4382 6324 5.747565 GCACTCGCAATATATGTTAAGCAA 58.252 37.500 0.00 0.00 38.36 3.91
4384 6326 5.848036 CACTCGCAATATATGTTAAGCAAGC 59.152 40.000 0.00 0.00 0.00 4.01
4385 6327 5.527214 ACTCGCAATATATGTTAAGCAAGCA 59.473 36.000 0.00 0.00 0.00 3.91
4386 6328 6.205464 ACTCGCAATATATGTTAAGCAAGCAT 59.795 34.615 0.00 0.00 0.00 3.79
4418 6360 6.872585 TTTTTCTGGATGGGCATATCTTTT 57.127 33.333 1.79 0.00 0.00 2.27
4433 6375 6.192863 GCATATCTTTTCTTTTAGTTCGTGCG 59.807 38.462 0.00 0.00 0.00 5.34
4582 6524 9.944376 AAGTTCTAACTATGAGTTTTCTGCATA 57.056 29.630 0.00 0.00 39.51 3.14
4608 6550 9.823647 ATAGTATTCAAGTTCTCAGTTGGTATG 57.176 33.333 0.00 0.00 34.45 2.39
4624 6566 5.895636 TGGTATGCAAATGATCGTTTCTT 57.104 34.783 10.02 6.68 0.00 2.52
4633 6575 3.410631 TGATCGTTTCTTGGCACCTTA 57.589 42.857 0.00 0.00 0.00 2.69
4663 6606 1.674359 ACAATCAGTTGTTCCACGCA 58.326 45.000 0.00 0.00 46.07 5.24
4715 6658 8.118607 GCTTTGCCATTTTTCTTGATTATAAGC 58.881 33.333 0.00 0.00 0.00 3.09
4763 6706 9.573133 GCTAATTGCATCAAAAATACAGTTAGT 57.427 29.630 0.00 0.00 42.31 2.24
4766 6709 9.979578 AATTGCATCAAAAATACAGTTAGTTCA 57.020 25.926 0.00 0.00 0.00 3.18
4768 6711 9.624697 TTGCATCAAAAATACAGTTAGTTCATC 57.375 29.630 0.00 0.00 0.00 2.92
4769 6712 8.791675 TGCATCAAAAATACAGTTAGTTCATCA 58.208 29.630 0.00 0.00 0.00 3.07
4770 6713 9.624697 GCATCAAAAATACAGTTAGTTCATCAA 57.375 29.630 0.00 0.00 0.00 2.57
4772 6715 9.846248 ATCAAAAATACAGTTAGTTCATCAAGC 57.154 29.630 0.00 0.00 0.00 4.01
4773 6716 8.845227 TCAAAAATACAGTTAGTTCATCAAGCA 58.155 29.630 0.00 0.00 0.00 3.91
4774 6717 9.462174 CAAAAATACAGTTAGTTCATCAAGCAA 57.538 29.630 0.00 0.00 0.00 3.91
4775 6718 9.463443 AAAAATACAGTTAGTTCATCAAGCAAC 57.537 29.630 0.00 0.00 0.00 4.17
4776 6719 6.743575 ATACAGTTAGTTCATCAAGCAACC 57.256 37.500 0.00 0.00 0.00 3.77
4777 6720 4.460263 ACAGTTAGTTCATCAAGCAACCA 58.540 39.130 0.00 0.00 0.00 3.67
4778 6721 4.887071 ACAGTTAGTTCATCAAGCAACCAA 59.113 37.500 0.00 0.00 0.00 3.67
4779 6722 5.536161 ACAGTTAGTTCATCAAGCAACCAAT 59.464 36.000 0.00 0.00 0.00 3.16
4780 6723 5.860182 CAGTTAGTTCATCAAGCAACCAATG 59.140 40.000 0.00 0.00 0.00 2.82
4781 6724 5.536161 AGTTAGTTCATCAAGCAACCAATGT 59.464 36.000 0.00 0.00 0.00 2.71
4782 6725 4.942761 AGTTCATCAAGCAACCAATGTT 57.057 36.364 0.00 0.00 34.14 2.71
4810 6753 7.280356 GCTATTGGAACCTCCTTAATCAGTTA 58.720 38.462 0.00 0.00 37.46 2.24
4865 6808 9.460906 CATAATACTCGTACTAAAGAAGAACCC 57.539 37.037 0.00 0.00 0.00 4.11
4866 6809 7.472334 AATACTCGTACTAAAGAAGAACCCA 57.528 36.000 0.00 0.00 0.00 4.51
4867 6810 5.131594 ACTCGTACTAAAGAAGAACCCAC 57.868 43.478 0.00 0.00 0.00 4.61
4868 6811 4.831710 ACTCGTACTAAAGAAGAACCCACT 59.168 41.667 0.00 0.00 0.00 4.00
4869 6812 5.048154 ACTCGTACTAAAGAAGAACCCACTC 60.048 44.000 0.00 0.00 0.00 3.51
4870 6813 4.219288 TCGTACTAAAGAAGAACCCACTCC 59.781 45.833 0.00 0.00 0.00 3.85
4871 6814 4.620097 CGTACTAAAGAAGAACCCACTCCC 60.620 50.000 0.00 0.00 0.00 4.30
4872 6815 2.302157 ACTAAAGAAGAACCCACTCCCG 59.698 50.000 0.00 0.00 0.00 5.14
4873 6816 1.137697 AAAGAAGAACCCACTCCCGT 58.862 50.000 0.00 0.00 0.00 5.28
4874 6817 1.137697 AAGAAGAACCCACTCCCGTT 58.862 50.000 0.00 0.00 0.00 4.44
4875 6818 0.685660 AGAAGAACCCACTCCCGTTC 59.314 55.000 0.00 0.00 38.93 3.95
4876 6819 0.395312 GAAGAACCCACTCCCGTTCA 59.605 55.000 0.00 0.00 40.69 3.18
4877 6820 0.841289 AAGAACCCACTCCCGTTCAA 59.159 50.000 0.00 0.00 40.69 2.69
4878 6821 0.396811 AGAACCCACTCCCGTTCAAG 59.603 55.000 0.00 0.00 40.69 3.02
4879 6822 0.605589 GAACCCACTCCCGTTCAAGG 60.606 60.000 0.00 0.00 38.58 3.61
4880 6823 1.350310 AACCCACTCCCGTTCAAGGT 61.350 55.000 0.00 0.00 0.00 3.50
4898 6841 7.558161 TCAAGGTCATGCAAATCTATGTTAG 57.442 36.000 0.00 0.00 0.00 2.34
4900 6843 8.264347 TCAAGGTCATGCAAATCTATGTTAGTA 58.736 33.333 0.00 0.00 0.00 1.82
4901 6844 8.892723 CAAGGTCATGCAAATCTATGTTAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
4903 6846 9.461312 AGGTCATGCAAATCTATGTTAGTAAAA 57.539 29.630 0.00 0.00 0.00 1.52
4953 6899 6.831664 ATACTAACTGTCATGAATCCCCTT 57.168 37.500 0.00 0.00 0.00 3.95
4958 6904 3.846588 ACTGTCATGAATCCCCTTAGTGT 59.153 43.478 0.00 0.00 0.00 3.55
5018 6966 3.914312 TCCAGTTTCGAAGTGATGAGAC 58.086 45.455 10.36 0.00 33.58 3.36
5146 7094 7.942341 ACCATCCAATAACAAGAAAGTAAGTCA 59.058 33.333 0.00 0.00 0.00 3.41
5161 7109 6.639632 AGTAAGTCACATTGTGCAGAAATT 57.360 33.333 12.04 3.39 32.98 1.82
5162 7110 7.042797 AGTAAGTCACATTGTGCAGAAATTT 57.957 32.000 12.04 0.00 32.98 1.82
5169 7117 8.028938 GTCACATTGTGCAGAAATTTACCTATT 58.971 33.333 12.04 0.00 32.98 1.73
5170 7118 8.028354 TCACATTGTGCAGAAATTTACCTATTG 58.972 33.333 12.04 0.00 32.98 1.90
5172 7120 8.028938 ACATTGTGCAGAAATTTACCTATTGTC 58.971 33.333 0.00 0.00 0.00 3.18
5174 7122 5.935206 TGTGCAGAAATTTACCTATTGTCGA 59.065 36.000 0.00 0.00 0.00 4.20
5175 7123 6.597672 TGTGCAGAAATTTACCTATTGTCGAT 59.402 34.615 0.00 0.00 0.00 3.59
5176 7124 6.907212 GTGCAGAAATTTACCTATTGTCGATG 59.093 38.462 0.00 0.00 0.00 3.84
5177 7125 5.909610 GCAGAAATTTACCTATTGTCGATGC 59.090 40.000 0.00 0.00 0.00 3.91
5178 7126 6.238484 GCAGAAATTTACCTATTGTCGATGCT 60.238 38.462 0.00 0.00 0.00 3.79
5179 7127 7.679638 GCAGAAATTTACCTATTGTCGATGCTT 60.680 37.037 0.00 0.00 0.00 3.91
5180 7128 8.826710 CAGAAATTTACCTATTGTCGATGCTTA 58.173 33.333 0.00 0.00 0.00 3.09
5181 7129 9.391006 AGAAATTTACCTATTGTCGATGCTTAA 57.609 29.630 0.00 0.00 0.00 1.85
5184 7132 8.902540 ATTTACCTATTGTCGATGCTTAATCA 57.097 30.769 0.00 0.00 34.68 2.57
5185 7133 8.902540 TTTACCTATTGTCGATGCTTAATCAT 57.097 30.769 0.00 0.00 34.68 2.45
5186 7134 8.534333 TTACCTATTGTCGATGCTTAATCATC 57.466 34.615 8.89 8.89 39.47 2.92
5194 7142 4.596801 GATGCTTAATCATCGATGCTCC 57.403 45.455 20.81 6.04 34.26 4.70
5195 7143 3.473923 TGCTTAATCATCGATGCTCCA 57.526 42.857 20.81 3.58 0.00 3.86
5196 7144 4.011966 TGCTTAATCATCGATGCTCCAT 57.988 40.909 20.81 6.01 0.00 3.41
5197 7145 3.999001 TGCTTAATCATCGATGCTCCATC 59.001 43.478 20.81 8.69 37.50 3.51
5198 7146 4.252073 GCTTAATCATCGATGCTCCATCT 58.748 43.478 20.81 0.00 38.59 2.90
5199 7147 4.093115 GCTTAATCATCGATGCTCCATCTG 59.907 45.833 20.81 6.77 38.59 2.90
5200 7148 3.766068 AATCATCGATGCTCCATCTGT 57.234 42.857 20.81 0.00 38.59 3.41
5201 7149 3.766068 ATCATCGATGCTCCATCTGTT 57.234 42.857 20.81 0.00 38.59 3.16
5202 7150 4.879197 ATCATCGATGCTCCATCTGTTA 57.121 40.909 20.81 0.00 38.59 2.41
5203 7151 3.982475 TCATCGATGCTCCATCTGTTAC 58.018 45.455 20.81 0.00 38.59 2.50
5204 7152 2.492019 TCGATGCTCCATCTGTTACG 57.508 50.000 3.98 0.00 38.59 3.18
5205 7153 2.021457 TCGATGCTCCATCTGTTACGA 58.979 47.619 0.00 0.00 38.59 3.43
5206 7154 2.033424 TCGATGCTCCATCTGTTACGAG 59.967 50.000 0.00 0.00 38.59 4.18
5207 7155 2.033424 CGATGCTCCATCTGTTACGAGA 59.967 50.000 0.00 0.00 38.59 4.04
5208 7156 3.304996 CGATGCTCCATCTGTTACGAGAT 60.305 47.826 0.00 0.00 38.59 2.75
5209 7157 4.626042 GATGCTCCATCTGTTACGAGATT 58.374 43.478 0.00 0.00 37.82 2.40
5210 7158 4.471904 TGCTCCATCTGTTACGAGATTT 57.528 40.909 0.00 0.00 29.72 2.17
5211 7159 4.832248 TGCTCCATCTGTTACGAGATTTT 58.168 39.130 0.00 0.00 29.72 1.82
5212 7160 4.870426 TGCTCCATCTGTTACGAGATTTTC 59.130 41.667 0.00 0.00 29.72 2.29
5213 7161 4.271291 GCTCCATCTGTTACGAGATTTTCC 59.729 45.833 0.00 0.00 29.72 3.13
5241 7189 5.281693 TGAAGTGACAACATGCTTAATCG 57.718 39.130 0.00 0.00 0.00 3.34
5248 7196 3.242413 ACAACATGCTTAATCGTCGATGC 60.242 43.478 8.83 8.72 0.00 3.91
5264 7212 5.059343 CGTCGATGCGGTTCTAATATAGTTG 59.941 44.000 0.00 0.00 0.00 3.16
5305 7253 4.357142 CATACTGCTTCATTGCCACATTC 58.643 43.478 0.00 0.00 0.00 2.67
5338 7297 4.043310 ACATCCTCCCATTTCTCAAACAGA 59.957 41.667 0.00 0.00 0.00 3.41
5501 7460 2.114616 CAGCTATCCCCTCTGTTCACT 58.885 52.381 0.00 0.00 0.00 3.41
5624 7583 5.105473 TGTGAACGGAGGGAGTAATTCTAAG 60.105 44.000 0.00 0.00 0.00 2.18
5638 7597 7.512992 AGTAATTCTAAGGAATGTGGATCCTG 58.487 38.462 14.23 0.00 46.65 3.86
5682 7647 3.256558 GCATTTGCAAATCCTCCTTCAC 58.743 45.455 21.70 0.33 41.59 3.18
5725 7696 2.940971 GCATGTGGTTGCAGAGGACATA 60.941 50.000 0.00 0.00 42.31 2.29
5741 7712 1.070758 ACATAGTCCGGGCTAGCATTG 59.929 52.381 22.28 16.61 0.00 2.82
5777 7748 1.583054 GACGTTTTGTCCTCTGCACT 58.417 50.000 0.00 0.00 42.04 4.40
5830 7801 1.202879 TCGAGGAAACAACCTGCCAAT 60.203 47.619 0.00 0.00 40.73 3.16
5842 7813 2.575279 ACCTGCCAATGATGAAGAGTCT 59.425 45.455 0.00 0.00 0.00 3.24
5843 7814 3.204526 CCTGCCAATGATGAAGAGTCTC 58.795 50.000 0.00 0.00 0.00 3.36
5864 7835 7.958583 AGTCTCCCTCCACAATATAGTATTGAT 59.041 37.037 14.66 0.00 33.51 2.57
5865 7836 8.037758 GTCTCCCTCCACAATATAGTATTGATG 58.962 40.741 14.66 9.60 33.51 3.07
5926 7897 9.463443 TCAATTCATATCTTCCGCATATATACG 57.537 33.333 0.00 0.00 0.00 3.06
5929 7900 7.562454 TCATATCTTCCGCATATATACGACA 57.438 36.000 6.92 0.00 0.00 4.35
5930 7901 7.992008 TCATATCTTCCGCATATATACGACAA 58.008 34.615 6.92 0.00 0.00 3.18
5960 7931 5.289595 TGTCCGAGCATATTCTGTATGTTC 58.710 41.667 2.89 2.89 33.60 3.18
5961 7932 5.069119 TGTCCGAGCATATTCTGTATGTTCT 59.931 40.000 9.25 0.00 34.40 3.01
5963 7934 5.069119 TCCGAGCATATTCTGTATGTTCTGT 59.931 40.000 9.25 0.00 34.40 3.41
5964 7935 6.264518 TCCGAGCATATTCTGTATGTTCTGTA 59.735 38.462 9.25 0.00 34.40 2.74
5965 7936 6.923508 CCGAGCATATTCTGTATGTTCTGTAA 59.076 38.462 9.25 0.00 34.40 2.41
5966 7937 7.115520 CCGAGCATATTCTGTATGTTCTGTAAG 59.884 40.741 9.25 0.00 34.40 2.34
5967 7938 7.649705 CGAGCATATTCTGTATGTTCTGTAAGT 59.350 37.037 9.25 0.00 34.40 2.24
5968 7939 9.967346 GAGCATATTCTGTATGTTCTGTAAGTA 57.033 33.333 5.12 0.00 33.97 2.24
5980 7951 7.919313 TGTTCTGTAAGTAACTAAAGTGACG 57.081 36.000 0.00 0.00 34.53 4.35
5981 7952 7.483307 TGTTCTGTAAGTAACTAAAGTGACGT 58.517 34.615 0.00 0.00 34.53 4.34
5982 7953 8.620416 TGTTCTGTAAGTAACTAAAGTGACGTA 58.380 33.333 0.00 0.00 34.53 3.57
5983 7954 9.617975 GTTCTGTAAGTAACTAAAGTGACGTAT 57.382 33.333 0.00 0.00 34.53 3.06
5985 7956 9.616634 TCTGTAAGTAACTAAAGTGACGTATTG 57.383 33.333 0.00 0.00 34.53 1.90
5986 7957 9.403110 CTGTAAGTAACTAAAGTGACGTATTGT 57.597 33.333 0.00 0.00 34.53 2.71
5990 7961 7.031975 AGTAACTAAAGTGACGTATTGTAGCC 58.968 38.462 0.00 0.00 34.53 3.93
5996 7976 3.061322 GTGACGTATTGTAGCCACACAA 58.939 45.455 0.00 0.00 42.32 3.33
6034 8026 4.948608 ATGAGTACTCAGACGTGTACTG 57.051 45.455 28.29 8.53 46.99 2.74
6035 8027 2.483106 TGAGTACTCAGACGTGTACTGC 59.517 50.000 21.74 11.43 46.99 4.40
6036 8028 2.743126 GAGTACTCAGACGTGTACTGCT 59.257 50.000 18.20 1.73 46.99 4.24
6037 8029 3.931468 GAGTACTCAGACGTGTACTGCTA 59.069 47.826 18.20 0.19 46.99 3.49
6038 8030 4.321718 AGTACTCAGACGTGTACTGCTAA 58.678 43.478 13.78 0.00 45.90 3.09
6039 8031 3.555917 ACTCAGACGTGTACTGCTAAC 57.444 47.619 0.00 0.00 35.61 2.34
6040 8032 2.228343 ACTCAGACGTGTACTGCTAACC 59.772 50.000 0.00 0.00 35.61 2.85
6041 8033 2.228103 CTCAGACGTGTACTGCTAACCA 59.772 50.000 0.00 0.00 35.61 3.67
6042 8034 2.823747 TCAGACGTGTACTGCTAACCAT 59.176 45.455 0.00 0.00 35.61 3.55
6043 8035 4.011698 TCAGACGTGTACTGCTAACCATA 58.988 43.478 0.00 0.00 35.61 2.74
6044 8036 4.460034 TCAGACGTGTACTGCTAACCATAA 59.540 41.667 0.00 0.00 35.61 1.90
6045 8037 5.126545 TCAGACGTGTACTGCTAACCATAAT 59.873 40.000 0.00 0.00 35.61 1.28
6046 8038 5.459107 CAGACGTGTACTGCTAACCATAATC 59.541 44.000 0.00 0.00 0.00 1.75
6047 8039 5.126545 AGACGTGTACTGCTAACCATAATCA 59.873 40.000 0.00 0.00 0.00 2.57
6048 8040 5.726397 ACGTGTACTGCTAACCATAATCAA 58.274 37.500 0.00 0.00 0.00 2.57
6049 8041 5.810587 ACGTGTACTGCTAACCATAATCAAG 59.189 40.000 0.00 0.00 0.00 3.02
6079 8071 0.322456 CCATCCAACTGCTCCCGAAA 60.322 55.000 0.00 0.00 0.00 3.46
6093 8085 6.795399 TGCTCCCGAAATCAAATTCTTATTC 58.205 36.000 0.00 0.00 0.00 1.75
6095 8087 6.371809 TCCCGAAATCAAATTCTTATTCCG 57.628 37.500 0.00 0.00 0.00 4.30
6098 8090 6.857964 CCCGAAATCAAATTCTTATTCCGATG 59.142 38.462 0.00 0.00 0.00 3.84
6099 8091 6.857964 CCGAAATCAAATTCTTATTCCGATGG 59.142 38.462 0.00 0.00 0.00 3.51
6100 8092 7.255104 CCGAAATCAAATTCTTATTCCGATGGA 60.255 37.037 0.00 0.00 0.00 3.41
6117 8109 9.982651 TTCCGATGGAGAATATTTAAAGAGTAG 57.017 33.333 0.00 0.00 31.21 2.57
6118 8110 9.144298 TCCGATGGAGAATATTTAAAGAGTAGT 57.856 33.333 0.00 0.00 0.00 2.73
6146 8138 7.696872 CGTATATCTGTATAATGTTCTCACCCG 59.303 40.741 0.00 0.00 0.00 5.28
6158 8150 0.034896 CTCACCCGCACCAACTACTT 59.965 55.000 0.00 0.00 0.00 2.24
6159 8151 0.470766 TCACCCGCACCAACTACTTT 59.529 50.000 0.00 0.00 0.00 2.66
6160 8152 0.591170 CACCCGCACCAACTACTTTG 59.409 55.000 0.00 0.00 34.63 2.77
6192 8185 3.208747 ACCCACACCAAGTACTGAAAG 57.791 47.619 0.00 0.00 42.29 2.62
6193 8186 1.880027 CCCACACCAAGTACTGAAAGC 59.120 52.381 0.00 0.00 37.60 3.51
6196 8189 3.466836 CACACCAAGTACTGAAAGCAGA 58.533 45.455 0.00 0.00 45.17 4.26
6197 8190 3.496130 CACACCAAGTACTGAAAGCAGAG 59.504 47.826 0.00 0.00 45.17 3.35
6198 8191 3.388024 ACACCAAGTACTGAAAGCAGAGA 59.612 43.478 0.00 0.00 45.17 3.10
6199 8192 4.141711 ACACCAAGTACTGAAAGCAGAGAA 60.142 41.667 0.00 0.00 45.17 2.87
6200 8193 4.212214 CACCAAGTACTGAAAGCAGAGAAC 59.788 45.833 0.00 0.00 45.17 3.01
6201 8194 3.430218 CCAAGTACTGAAAGCAGAGAACG 59.570 47.826 0.00 0.00 45.17 3.95
6202 8195 4.051922 CAAGTACTGAAAGCAGAGAACGT 58.948 43.478 0.00 0.00 45.17 3.99
6203 8196 4.323553 AGTACTGAAAGCAGAGAACGTT 57.676 40.909 0.00 0.00 45.17 3.99
6204 8197 4.694339 AGTACTGAAAGCAGAGAACGTTT 58.306 39.130 0.46 0.00 45.17 3.60
6205 8198 4.745620 AGTACTGAAAGCAGAGAACGTTTC 59.254 41.667 0.46 2.25 45.17 2.78
6206 8199 2.540101 ACTGAAAGCAGAGAACGTTTCG 59.460 45.455 0.46 1.08 45.17 3.46
6207 8200 2.794910 CTGAAAGCAGAGAACGTTTCGA 59.205 45.455 0.46 0.00 45.17 3.71
6208 8201 3.191669 TGAAAGCAGAGAACGTTTCGAA 58.808 40.909 0.46 0.00 32.58 3.71
6209 8202 3.619483 TGAAAGCAGAGAACGTTTCGAAA 59.381 39.130 6.47 6.47 32.58 3.46
6210 8203 4.093703 TGAAAGCAGAGAACGTTTCGAAAA 59.906 37.500 13.10 0.00 32.58 2.29
6211 8204 3.861569 AGCAGAGAACGTTTCGAAAAG 57.138 42.857 20.14 20.14 34.02 2.27
6212 8205 3.454375 AGCAGAGAACGTTTCGAAAAGA 58.546 40.909 26.94 0.00 34.02 2.52
6213 8206 3.869246 AGCAGAGAACGTTTCGAAAAGAA 59.131 39.130 26.94 0.00 37.01 2.52
6214 8207 4.331717 AGCAGAGAACGTTTCGAAAAGAAA 59.668 37.500 26.94 0.00 45.76 2.52
6225 8218 4.251543 TCGAAAAGAAAATTTGAGGGGC 57.748 40.909 0.00 0.00 0.00 5.80
6226 8219 3.639094 TCGAAAAGAAAATTTGAGGGGCA 59.361 39.130 0.00 0.00 0.00 5.36
6227 8220 3.989817 CGAAAAGAAAATTTGAGGGGCAG 59.010 43.478 0.00 0.00 0.00 4.85
6271 8264 0.449388 GTCTTGCTCAGGCCGAATTG 59.551 55.000 0.00 0.00 37.74 2.32
6284 8277 0.378257 CGAATTGTTCCATGGGCTCG 59.622 55.000 13.02 7.66 0.00 5.03
6328 8321 8.053026 CATCTCAAGATGTTCCATTTTTCTCT 57.947 34.615 11.14 0.00 45.10 3.10
6329 8322 7.678947 TCTCAAGATGTTCCATTTTTCTCTC 57.321 36.000 0.00 0.00 0.00 3.20
6330 8323 7.226441 TCTCAAGATGTTCCATTTTTCTCTCA 58.774 34.615 0.00 0.00 0.00 3.27
6331 8324 7.720957 TCTCAAGATGTTCCATTTTTCTCTCAA 59.279 33.333 0.00 0.00 0.00 3.02
6332 8325 7.651808 TCAAGATGTTCCATTTTTCTCTCAAC 58.348 34.615 0.00 0.00 0.00 3.18
6333 8326 6.581171 AGATGTTCCATTTTTCTCTCAACC 57.419 37.500 0.00 0.00 0.00 3.77
6334 8327 4.829064 TGTTCCATTTTTCTCTCAACCG 57.171 40.909 0.00 0.00 0.00 4.44
6335 8328 3.568007 TGTTCCATTTTTCTCTCAACCGG 59.432 43.478 0.00 0.00 0.00 5.28
6336 8329 2.159382 TCCATTTTTCTCTCAACCGGC 58.841 47.619 0.00 0.00 0.00 6.13
6337 8330 1.885887 CCATTTTTCTCTCAACCGGCA 59.114 47.619 0.00 0.00 0.00 5.69
6338 8331 2.493278 CCATTTTTCTCTCAACCGGCAT 59.507 45.455 0.00 0.00 0.00 4.40
6339 8332 3.694072 CCATTTTTCTCTCAACCGGCATA 59.306 43.478 0.00 0.00 0.00 3.14
6340 8333 4.201950 CCATTTTTCTCTCAACCGGCATAG 60.202 45.833 0.00 0.00 0.00 2.23
6341 8334 2.024176 TTTCTCTCAACCGGCATAGC 57.976 50.000 0.00 0.00 0.00 2.97
6342 8335 0.178068 TTCTCTCAACCGGCATAGCC 59.822 55.000 0.00 0.00 46.75 3.93
6501 8495 5.652452 GGGGTCAGTTAAGCTTGTTTATGAT 59.348 40.000 9.86 0.00 0.00 2.45
6506 8500 8.391106 GTCAGTTAAGCTTGTTTATGATAGGTG 58.609 37.037 9.86 0.00 0.00 4.00
6510 8504 2.623416 GCTTGTTTATGATAGGTGGGGC 59.377 50.000 0.00 0.00 0.00 5.80
6598 8594 0.770499 TGCCTCTGTTTGATGGACCA 59.230 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.460109 CGGTCATTGGATCTCACGCA 60.460 55.000 0.00 0.00 0.00 5.24
58 59 3.000041 CGTTTTCGGTCATTGGATCTCA 59.000 45.455 0.00 0.00 39.94 3.27
68 69 1.573829 GCCTGATGCGTTTTCGGTCA 61.574 55.000 0.00 0.00 44.29 4.02
70 71 1.169661 TTGCCTGATGCGTTTTCGGT 61.170 50.000 0.00 0.00 45.60 4.69
108 109 2.553172 ACGCCCATAGAGATTAGACGAC 59.447 50.000 0.00 0.00 0.00 4.34
132 133 1.065854 ACAAGAATCAAGGGAGCTCCG 60.066 52.381 26.36 13.13 41.52 4.63
142 143 6.552008 ACCCTTATCCAGAAACAAGAATCAA 58.448 36.000 0.00 0.00 0.00 2.57
167 168 3.428746 TTTAACACAGCACAAACGCAT 57.571 38.095 0.00 0.00 0.00 4.73
209 210 4.152759 CGATAAAAGGCGTTTCCACTTACA 59.847 41.667 4.63 0.00 37.29 2.41
212 213 2.095415 GCGATAAAAGGCGTTTCCACTT 60.095 45.455 4.63 0.00 37.29 3.16
280 284 3.980646 TTTCATGAGGTTTGGTGAACG 57.019 42.857 0.00 0.00 39.22 3.95
296 300 5.301551 TGCTGCTTTTAGGAGTTTCATTTCA 59.698 36.000 0.00 0.00 35.94 2.69
297 301 5.772521 TGCTGCTTTTAGGAGTTTCATTTC 58.227 37.500 0.00 0.00 35.94 2.17
298 302 5.789643 TGCTGCTTTTAGGAGTTTCATTT 57.210 34.783 0.00 0.00 35.94 2.32
299 303 5.068987 TGTTGCTGCTTTTAGGAGTTTCATT 59.931 36.000 0.00 0.00 35.94 2.57
300 304 4.584325 TGTTGCTGCTTTTAGGAGTTTCAT 59.416 37.500 0.00 0.00 35.94 2.57
301 305 3.951037 TGTTGCTGCTTTTAGGAGTTTCA 59.049 39.130 0.00 0.00 35.94 2.69
347 351 2.431954 TTGTTTCCCGTGGTTTGGTA 57.568 45.000 0.00 0.00 0.00 3.25
354 358 1.660264 GCGCTTTTGTTTCCCGTGG 60.660 57.895 0.00 0.00 0.00 4.94
368 372 0.320771 AAATCTCAACCTCGTGCGCT 60.321 50.000 9.73 0.00 0.00 5.92
447 452 7.375834 GGGTTAACCTAAAGAATTTGTCCAAG 58.624 38.462 23.69 0.00 39.63 3.61
596 612 2.017049 CCCATTGGTTTCTAGAAGCGG 58.983 52.381 12.51 8.26 0.00 5.52
710 726 1.018910 GCTCTCTCTGGTCGGAGTAC 58.981 60.000 6.69 0.00 35.11 2.73
712 728 1.747367 CGCTCTCTCTGGTCGGAGT 60.747 63.158 6.69 0.00 35.11 3.85
781 797 1.001764 CATGGCTTCACCTGGCTCA 60.002 57.895 0.00 0.00 40.22 4.26
899 922 2.037385 AAGGAAGAAGGAGCAGGACT 57.963 50.000 0.00 0.00 0.00 3.85
900 923 2.869101 AAAGGAAGAAGGAGCAGGAC 57.131 50.000 0.00 0.00 0.00 3.85
901 924 3.456277 GGATAAAGGAAGAAGGAGCAGGA 59.544 47.826 0.00 0.00 0.00 3.86
905 959 2.780592 AGGGGATAAAGGAAGAAGGAGC 59.219 50.000 0.00 0.00 0.00 4.70
983 1037 1.270518 CCATGGATCGATGAGGTCACC 60.271 57.143 18.33 0.00 0.00 4.02
1009 1063 1.921230 GAGTCGAGTTCTGCGGAATTC 59.079 52.381 18.30 18.30 35.65 2.17
1034 1092 5.278463 GCAAGCAAAATGGTCTTCTCACTAA 60.278 40.000 0.00 0.00 0.00 2.24
1044 1102 0.881118 TCTCGGCAAGCAAAATGGTC 59.119 50.000 0.00 0.00 0.00 4.02
1045 1103 0.883833 CTCTCGGCAAGCAAAATGGT 59.116 50.000 0.00 0.00 0.00 3.55
1081 1140 4.929146 TGATCATATCCCCTCTCGTAGA 57.071 45.455 0.00 0.00 0.00 2.59
1086 1145 7.487822 TTGTATCTTGATCATATCCCCTCTC 57.512 40.000 0.00 0.00 0.00 3.20
1113 1179 1.139947 GTCTCTGTACAGCTCCGGC 59.860 63.158 18.45 4.28 39.06 6.13
1312 1378 2.092681 CAGAATGTGTCGTCCATCGTTG 59.907 50.000 0.00 0.00 40.80 4.10
1322 1388 2.998670 ACAGCAGATTCAGAATGTGTCG 59.001 45.455 18.89 13.36 34.84 4.35
1337 1403 2.166050 AGATCAGTACAGAGCACAGCAG 59.834 50.000 6.29 0.00 0.00 4.24
1445 1511 2.432444 CAAGGATACGAAGCAACCCAA 58.568 47.619 0.00 0.00 46.39 4.12
1456 1522 8.013378 CACTTTGTAGTTTAAACCAAGGATACG 58.987 37.037 19.22 6.04 34.68 3.06
1477 1543 9.546428 CAAAACAAAAGAATTCCTATCCACTTT 57.454 29.630 0.65 0.00 0.00 2.66
1481 1547 6.928492 GTGCAAAACAAAAGAATTCCTATCCA 59.072 34.615 0.65 0.00 0.00 3.41
1493 1559 6.457257 CCAGAAATTCAGGTGCAAAACAAAAG 60.457 38.462 0.00 0.00 0.00 2.27
1535 1601 2.031870 AGGAACACAAACTCAAAGGGC 58.968 47.619 0.00 0.00 0.00 5.19
1536 1602 4.736126 AAAGGAACACAAACTCAAAGGG 57.264 40.909 0.00 0.00 0.00 3.95
1541 1607 5.242838 AGTGAACAAAAGGAACACAAACTCA 59.757 36.000 0.00 0.00 34.47 3.41
1542 1608 5.709966 AGTGAACAAAAGGAACACAAACTC 58.290 37.500 0.00 0.00 34.47 3.01
1543 1609 5.722021 AGTGAACAAAAGGAACACAAACT 57.278 34.783 0.00 0.00 34.47 2.66
1776 1946 6.715718 AGCAGAGAAGTGACTACTGTTAACTA 59.284 38.462 7.22 0.00 37.19 2.24
1780 1950 5.048643 GTGAGCAGAGAAGTGACTACTGTTA 60.049 44.000 13.00 2.13 37.19 2.41
1814 1984 1.203052 GCAGCAACTACAATGTGGCAT 59.797 47.619 0.00 0.00 39.25 4.40
1847 2017 5.530915 TGCACATCTATTAAGGTAACCATGC 59.469 40.000 0.00 0.00 37.17 4.06
1957 2127 4.404073 ACCTTTGCAATGGTACACTGAAAA 59.596 37.500 29.98 0.00 41.14 2.29
2161 2332 4.406456 TGTAAGCTCACCATTCACCAAAT 58.594 39.130 0.00 0.00 0.00 2.32
2399 2849 6.095300 TGCAAACATGCTAATTACTGCACTAT 59.905 34.615 1.82 0.00 42.26 2.12
2482 2932 1.795170 CGGTTTGGCCCTGACACTTG 61.795 60.000 0.00 0.00 0.00 3.16
2560 3011 9.974750 GAACTAGTGCTACTGAATCAATTAAAC 57.025 33.333 0.00 0.00 0.00 2.01
2655 3106 1.603456 TCGAGCAATTTCACCTGCAA 58.397 45.000 0.00 0.00 41.17 4.08
2719 3430 5.916318 TGCAATGGTTGAAACTTCTCAAAT 58.084 33.333 0.00 0.00 37.08 2.32
2740 3451 9.654417 GGAAATTTCAATACAATTGCAATATGC 57.346 29.630 19.49 0.00 45.29 3.14
2752 3463 8.286800 CGTGAGTTTAGTGGAAATTTCAATACA 58.713 33.333 19.49 5.71 30.16 2.29
2755 3466 7.272037 ACGTGAGTTTAGTGGAAATTTCAAT 57.728 32.000 19.49 7.91 46.40 2.57
2894 3605 5.439721 TGTACCATTGATTTGATCCAGGAG 58.560 41.667 0.00 0.00 0.00 3.69
2896 3607 7.822161 TTATGTACCATTGATTTGATCCAGG 57.178 36.000 0.00 0.00 0.00 4.45
2929 3641 3.555956 ACAGCTAATTAAATGTCCGAGCG 59.444 43.478 0.00 0.00 33.69 5.03
2930 3642 6.787085 ATACAGCTAATTAAATGTCCGAGC 57.213 37.500 5.69 0.00 0.00 5.03
2952 3664 6.428159 GTGTTGAAGTATTGAGACACCAGAAT 59.572 38.462 0.00 0.00 33.22 2.40
3105 3819 6.660521 ACACATGATGAGTTTGGAACATACAT 59.339 34.615 0.00 0.00 42.66 2.29
3110 3824 4.206375 ACACACATGATGAGTTTGGAACA 58.794 39.130 0.00 0.00 0.00 3.18
3167 3881 3.205338 CACCGCCATCATTATCTTCACA 58.795 45.455 0.00 0.00 0.00 3.58
3194 3908 5.502544 GCAATATTCTCGTACCTTTGAGTGC 60.503 44.000 0.00 0.00 33.88 4.40
3254 3968 5.183228 AGTTCCCGGTTGAATACTGTATTG 58.817 41.667 17.21 3.26 0.00 1.90
3255 3969 5.431179 AGTTCCCGGTTGAATACTGTATT 57.569 39.130 12.62 12.62 0.00 1.89
3415 4337 3.169908 GAAGAGATGGGATAGGGGAGAC 58.830 54.545 0.00 0.00 0.00 3.36
3427 4349 3.713764 AGAGTGGTAATGGGAAGAGATGG 59.286 47.826 0.00 0.00 0.00 3.51
3432 4354 5.189145 GGTTTCTAGAGTGGTAATGGGAAGA 59.811 44.000 0.00 0.00 0.00 2.87
3468 4390 9.722056 GTATACAATTGGAATGATCTGTTGTTC 57.278 33.333 10.83 0.00 31.70 3.18
3492 4414 8.838365 GTCATCTATTTTAGAACGGAGAGAGTA 58.162 37.037 0.00 0.00 38.50 2.59
3493 4415 7.558444 AGTCATCTATTTTAGAACGGAGAGAGT 59.442 37.037 0.00 0.00 38.50 3.24
3494 4416 7.936584 AGTCATCTATTTTAGAACGGAGAGAG 58.063 38.462 0.00 0.00 38.50 3.20
3495 4417 7.556635 TGAGTCATCTATTTTAGAACGGAGAGA 59.443 37.037 0.00 0.00 38.50 3.10
3496 4418 7.708051 TGAGTCATCTATTTTAGAACGGAGAG 58.292 38.462 0.00 0.00 38.50 3.20
3497 4419 7.640597 TGAGTCATCTATTTTAGAACGGAGA 57.359 36.000 0.00 0.00 38.50 3.71
3498 4420 7.976734 AGTTGAGTCATCTATTTTAGAACGGAG 59.023 37.037 1.70 0.00 38.50 4.63
3499 4421 7.837863 AGTTGAGTCATCTATTTTAGAACGGA 58.162 34.615 1.70 0.00 38.50 4.69
3500 4422 8.480643 AAGTTGAGTCATCTATTTTAGAACGG 57.519 34.615 4.14 0.00 38.50 4.44
3501 4423 9.746711 CAAAGTTGAGTCATCTATTTTAGAACG 57.253 33.333 4.14 0.00 38.50 3.95
3538 4460 9.716531 GACCCAACTTTATACTAACTTTGTACT 57.283 33.333 0.00 0.00 0.00 2.73
3539 4461 9.492973 TGACCCAACTTTATACTAACTTTGTAC 57.507 33.333 0.00 0.00 0.00 2.90
3541 4463 9.227777 GATGACCCAACTTTATACTAACTTTGT 57.772 33.333 0.00 0.00 0.00 2.83
3542 4464 9.449719 AGATGACCCAACTTTATACTAACTTTG 57.550 33.333 0.00 0.00 0.00 2.77
3549 4471 8.432805 CCAGAATAGATGACCCAACTTTATACT 58.567 37.037 0.00 0.00 0.00 2.12
3550 4472 8.429641 TCCAGAATAGATGACCCAACTTTATAC 58.570 37.037 0.00 0.00 0.00 1.47
3551 4473 8.561536 TCCAGAATAGATGACCCAACTTTATA 57.438 34.615 0.00 0.00 0.00 0.98
3552 4474 7.451731 TCCAGAATAGATGACCCAACTTTAT 57.548 36.000 0.00 0.00 0.00 1.40
3553 4475 6.884472 TCCAGAATAGATGACCCAACTTTA 57.116 37.500 0.00 0.00 0.00 1.85
3554 4476 5.779241 TCCAGAATAGATGACCCAACTTT 57.221 39.130 0.00 0.00 0.00 2.66
3555 4477 5.014123 TGTTCCAGAATAGATGACCCAACTT 59.986 40.000 0.00 0.00 0.00 2.66
3556 4478 4.536090 TGTTCCAGAATAGATGACCCAACT 59.464 41.667 0.00 0.00 0.00 3.16
3557 4479 4.843728 TGTTCCAGAATAGATGACCCAAC 58.156 43.478 0.00 0.00 0.00 3.77
3558 4480 4.782691 TCTGTTCCAGAATAGATGACCCAA 59.217 41.667 3.03 0.00 37.57 4.12
3559 4481 4.361783 TCTGTTCCAGAATAGATGACCCA 58.638 43.478 3.03 0.00 37.57 4.51
3560 4482 4.202305 CCTCTGTTCCAGAATAGATGACCC 60.202 50.000 7.23 0.00 40.18 4.46
3561 4483 4.202305 CCCTCTGTTCCAGAATAGATGACC 60.202 50.000 7.23 0.00 40.18 4.02
3562 4484 4.651503 TCCCTCTGTTCCAGAATAGATGAC 59.348 45.833 7.23 0.00 40.18 3.06
3563 4485 4.883759 TCCCTCTGTTCCAGAATAGATGA 58.116 43.478 7.23 5.28 40.18 2.92
3564 4486 4.653341 ACTCCCTCTGTTCCAGAATAGATG 59.347 45.833 7.23 5.21 40.18 2.90
3565 4487 4.889780 ACTCCCTCTGTTCCAGAATAGAT 58.110 43.478 7.23 0.00 40.18 1.98
3566 4488 4.338795 ACTCCCTCTGTTCCAGAATAGA 57.661 45.455 6.67 6.67 40.18 1.98
3567 4489 4.956700 TGTACTCCCTCTGTTCCAGAATAG 59.043 45.833 0.00 0.00 40.18 1.73
3568 4490 4.942944 TGTACTCCCTCTGTTCCAGAATA 58.057 43.478 0.00 0.00 40.18 1.75
3569 4491 3.791320 TGTACTCCCTCTGTTCCAGAAT 58.209 45.455 0.00 0.00 40.18 2.40
3570 4492 3.254093 TGTACTCCCTCTGTTCCAGAA 57.746 47.619 0.00 0.00 40.18 3.02
3571 4493 2.992847 TGTACTCCCTCTGTTCCAGA 57.007 50.000 0.00 0.00 38.25 3.86
3572 4494 3.369892 CCAATGTACTCCCTCTGTTCCAG 60.370 52.174 0.00 0.00 0.00 3.86
3573 4495 2.571653 CCAATGTACTCCCTCTGTTCCA 59.428 50.000 0.00 0.00 0.00 3.53
3574 4496 2.572104 ACCAATGTACTCCCTCTGTTCC 59.428 50.000 0.00 0.00 0.00 3.62
3575 4497 3.008049 ACACCAATGTACTCCCTCTGTTC 59.992 47.826 0.00 0.00 37.26 3.18
3576 4498 2.979678 ACACCAATGTACTCCCTCTGTT 59.020 45.455 0.00 0.00 37.26 3.16
3577 4499 2.303022 CACACCAATGTACTCCCTCTGT 59.697 50.000 0.00 0.00 36.72 3.41
3578 4500 2.936993 GCACACCAATGTACTCCCTCTG 60.937 54.545 0.00 0.00 36.72 3.35
3579 4501 1.279271 GCACACCAATGTACTCCCTCT 59.721 52.381 0.00 0.00 36.72 3.69
3580 4502 1.679032 GGCACACCAATGTACTCCCTC 60.679 57.143 0.00 0.00 36.72 4.30
3581 4503 0.328258 GGCACACCAATGTACTCCCT 59.672 55.000 0.00 0.00 36.72 4.20
3582 4504 0.328258 AGGCACACCAATGTACTCCC 59.672 55.000 0.00 0.00 36.72 4.30
3583 4505 1.271379 ACAGGCACACCAATGTACTCC 60.271 52.381 0.00 0.00 36.72 3.85
3584 4506 1.806542 CACAGGCACACCAATGTACTC 59.193 52.381 0.00 0.00 36.72 2.59
3585 4507 1.896220 CACAGGCACACCAATGTACT 58.104 50.000 0.00 0.00 36.72 2.73
3586 4508 0.240945 GCACAGGCACACCAATGTAC 59.759 55.000 0.00 0.00 36.72 2.90
3587 4509 0.110295 AGCACAGGCACACCAATGTA 59.890 50.000 0.00 0.00 44.61 2.29
3588 4510 0.110295 TAGCACAGGCACACCAATGT 59.890 50.000 0.00 0.00 44.61 2.71
3589 4511 0.523072 GTAGCACAGGCACACCAATG 59.477 55.000 0.00 0.00 44.61 2.82
3590 4512 0.401738 AGTAGCACAGGCACACCAAT 59.598 50.000 0.00 0.00 44.61 3.16
3591 4513 0.534877 CAGTAGCACAGGCACACCAA 60.535 55.000 0.00 0.00 44.61 3.67
3592 4514 1.071299 CAGTAGCACAGGCACACCA 59.929 57.895 0.00 0.00 44.61 4.17
3593 4515 0.535102 AACAGTAGCACAGGCACACC 60.535 55.000 0.00 0.00 44.61 4.16
3594 4516 0.868406 GAACAGTAGCACAGGCACAC 59.132 55.000 0.00 0.00 44.61 3.82
3595 4517 0.758734 AGAACAGTAGCACAGGCACA 59.241 50.000 0.00 0.00 44.61 4.57
3596 4518 2.288825 TGTAGAACAGTAGCACAGGCAC 60.289 50.000 0.00 0.00 44.61 5.01
3600 4522 3.430218 GCAGTTGTAGAACAGTAGCACAG 59.570 47.826 5.45 0.00 34.17 3.66
3688 4610 1.370900 GCAAAGCAAGTGAGCACGG 60.371 57.895 0.00 0.00 36.85 4.94
3702 4627 3.815856 TGAAGGTTGAAGCAATGCAAA 57.184 38.095 8.35 0.00 0.00 3.68
3745 4670 7.062848 CGCATTAACCTTTTTAGCAAACAAAG 58.937 34.615 0.00 0.00 0.00 2.77
3750 4675 4.039366 ACCCGCATTAACCTTTTTAGCAAA 59.961 37.500 0.00 0.00 0.00 3.68
3769 4694 2.366640 TCCAGAGGATAGAAGACCCG 57.633 55.000 0.00 0.00 0.00 5.28
3782 4707 8.051535 ACAATATATGAGCCCATTATTCCAGAG 58.948 37.037 0.00 0.00 34.31 3.35
3848 4773 7.673926 GGGCAAATGGGGAATATAAATCTAAGA 59.326 37.037 0.00 0.00 0.00 2.10
3865 4790 6.332630 CAATGTTAAGTAGAAGGGCAAATGG 58.667 40.000 0.00 0.00 0.00 3.16
4031 5973 2.957402 AATCTCCCAAGAGTGCAACA 57.043 45.000 0.00 0.00 41.43 3.33
4067 6009 3.472652 TGTACAGTGAAATTTCGGTGCT 58.527 40.909 13.34 6.21 0.00 4.40
4117 6059 2.289694 TGTTTCTTAGTGGAGCAGGCTC 60.290 50.000 12.78 12.78 42.04 4.70
4133 6075 2.353109 GCAGGCTGGGAATCTTTGTTTC 60.353 50.000 17.64 0.00 0.00 2.78
4134 6076 1.620323 GCAGGCTGGGAATCTTTGTTT 59.380 47.619 17.64 0.00 0.00 2.83
4137 6079 1.259609 TTGCAGGCTGGGAATCTTTG 58.740 50.000 17.64 0.00 0.00 2.77
4144 6086 1.064003 TCTAGTTTTGCAGGCTGGGA 58.936 50.000 17.64 0.00 0.00 4.37
4159 6101 4.367039 TTTGGAAAAGGAGGTGGTCTAG 57.633 45.455 0.00 0.00 0.00 2.43
4161 6103 3.680777 TTTTGGAAAAGGAGGTGGTCT 57.319 42.857 0.00 0.00 0.00 3.85
4185 6127 2.614734 GGCGCTAGGTGGTCTAGTTTTT 60.615 50.000 7.64 0.00 45.55 1.94
4186 6128 1.066358 GGCGCTAGGTGGTCTAGTTTT 60.066 52.381 7.64 0.00 45.55 2.43
4187 6129 0.535797 GGCGCTAGGTGGTCTAGTTT 59.464 55.000 7.64 0.00 45.55 2.66
4188 6130 0.324460 AGGCGCTAGGTGGTCTAGTT 60.324 55.000 7.64 0.00 45.55 2.24
4189 6131 0.752376 GAGGCGCTAGGTGGTCTAGT 60.752 60.000 7.64 0.00 45.55 2.57
4190 6132 0.752009 TGAGGCGCTAGGTGGTCTAG 60.752 60.000 7.64 0.00 46.33 2.43
4191 6133 1.035932 GTGAGGCGCTAGGTGGTCTA 61.036 60.000 7.64 0.00 0.00 2.59
4224 6166 9.920946 TTAATAAAGCTGAACAAATAGGATCCT 57.079 29.630 20.48 20.48 0.00 3.24
4260 6202 1.732259 CTGAACCACCGACATAGTTGC 59.268 52.381 0.00 0.00 0.00 4.17
4278 6220 7.061557 CGCATCACTAAGATATGTGTATGACTG 59.938 40.741 0.00 0.00 34.43 3.51
4301 6243 1.381522 ACAATGCTACATGATGCGCA 58.618 45.000 14.96 14.96 32.93 6.09
4303 6245 2.481568 CCCTACAATGCTACATGATGCG 59.518 50.000 0.00 0.00 0.00 4.73
4417 6359 6.586751 CATTTACTCGCACGAACTAAAAGAA 58.413 36.000 0.00 0.00 0.00 2.52
4418 6360 5.389098 GCATTTACTCGCACGAACTAAAAGA 60.389 40.000 0.00 0.00 0.00 2.52
4433 6375 6.734104 AGAACATCAAGACTGCATTTACTC 57.266 37.500 0.00 0.00 0.00 2.59
4582 6524 9.823647 CATACCAACTGAGAACTTGAATACTAT 57.176 33.333 0.00 0.00 0.00 2.12
4583 6525 7.764443 GCATACCAACTGAGAACTTGAATACTA 59.236 37.037 0.00 0.00 0.00 1.82
4608 6550 2.663119 GTGCCAAGAAACGATCATTTGC 59.337 45.455 0.00 0.00 0.00 3.68
4624 6566 3.323115 TGTTTGCATGAAATAAGGTGCCA 59.677 39.130 0.00 0.00 36.79 4.92
4753 6696 6.237901 TGGTTGCTTGATGAACTAACTGTAT 58.762 36.000 0.00 0.00 0.00 2.29
4776 6719 3.099141 AGGTTCCAATAGCCCAACATTG 58.901 45.455 0.00 0.00 32.94 2.82
4777 6720 3.365472 GAGGTTCCAATAGCCCAACATT 58.635 45.455 0.00 0.00 0.00 2.71
4778 6721 2.358195 GGAGGTTCCAATAGCCCAACAT 60.358 50.000 0.00 0.00 36.28 2.71
4779 6722 1.005450 GGAGGTTCCAATAGCCCAACA 59.995 52.381 0.00 0.00 36.28 3.33
4780 6723 1.285078 AGGAGGTTCCAATAGCCCAAC 59.715 52.381 0.00 0.00 39.61 3.77
4781 6724 1.681229 AGGAGGTTCCAATAGCCCAA 58.319 50.000 0.00 0.00 39.61 4.12
4782 6725 1.681229 AAGGAGGTTCCAATAGCCCA 58.319 50.000 0.00 0.00 39.61 5.36
4788 6731 7.780271 GGAATAACTGATTAAGGAGGTTCCAAT 59.220 37.037 0.00 0.00 39.61 3.16
4793 6736 7.928873 TCTTGGAATAACTGATTAAGGAGGTT 58.071 34.615 0.00 0.00 0.00 3.50
4848 6791 4.492611 GGAGTGGGTTCTTCTTTAGTACG 58.507 47.826 0.00 0.00 0.00 3.67
4849 6792 4.620097 CGGGAGTGGGTTCTTCTTTAGTAC 60.620 50.000 0.00 0.00 0.00 2.73
4850 6793 3.512724 CGGGAGTGGGTTCTTCTTTAGTA 59.487 47.826 0.00 0.00 0.00 1.82
4852 6795 2.302157 ACGGGAGTGGGTTCTTCTTTAG 59.698 50.000 0.00 0.00 44.82 1.85
4853 6796 2.332117 ACGGGAGTGGGTTCTTCTTTA 58.668 47.619 0.00 0.00 44.82 1.85
4854 6797 1.137697 ACGGGAGTGGGTTCTTCTTT 58.862 50.000 0.00 0.00 44.82 2.52
4855 6798 1.071857 GAACGGGAGTGGGTTCTTCTT 59.928 52.381 0.00 0.00 46.69 2.52
4856 6799 0.685660 GAACGGGAGTGGGTTCTTCT 59.314 55.000 0.00 0.00 46.69 2.85
4857 6800 0.395312 TGAACGGGAGTGGGTTCTTC 59.605 55.000 5.63 0.00 46.69 2.87
4858 6801 0.841289 TTGAACGGGAGTGGGTTCTT 59.159 50.000 5.63 0.00 46.69 2.52
4859 6802 0.396811 CTTGAACGGGAGTGGGTTCT 59.603 55.000 5.63 0.00 46.69 3.01
4860 6803 0.605589 CCTTGAACGGGAGTGGGTTC 60.606 60.000 0.00 0.00 46.69 3.62
4861 6804 1.350310 ACCTTGAACGGGAGTGGGTT 61.350 55.000 0.00 0.00 46.69 4.11
4862 6805 1.765597 GACCTTGAACGGGAGTGGGT 61.766 60.000 0.00 0.00 46.69 4.51
4863 6806 1.003718 GACCTTGAACGGGAGTGGG 60.004 63.158 0.00 0.00 46.69 4.61
4864 6807 0.324943 ATGACCTTGAACGGGAGTGG 59.675 55.000 0.00 0.00 46.69 4.00
4865 6808 1.442769 CATGACCTTGAACGGGAGTG 58.557 55.000 0.00 0.00 46.69 3.51
4867 6810 0.321564 TGCATGACCTTGAACGGGAG 60.322 55.000 0.00 0.00 0.00 4.30
4868 6811 0.109532 TTGCATGACCTTGAACGGGA 59.890 50.000 0.00 0.00 0.00 5.14
4869 6812 0.958091 TTTGCATGACCTTGAACGGG 59.042 50.000 0.00 0.00 0.00 5.28
4870 6813 2.489329 AGATTTGCATGACCTTGAACGG 59.511 45.455 0.00 0.00 0.00 4.44
4871 6814 3.837213 AGATTTGCATGACCTTGAACG 57.163 42.857 0.00 0.00 0.00 3.95
4872 6815 6.199937 ACATAGATTTGCATGACCTTGAAC 57.800 37.500 0.00 0.00 0.00 3.18
4873 6816 6.839124 AACATAGATTTGCATGACCTTGAA 57.161 33.333 0.00 0.00 0.00 2.69
4874 6817 7.112122 ACTAACATAGATTTGCATGACCTTGA 58.888 34.615 0.00 0.00 0.00 3.02
4875 6818 7.325660 ACTAACATAGATTTGCATGACCTTG 57.674 36.000 0.00 0.00 0.00 3.61
4876 6819 9.461312 TTTACTAACATAGATTTGCATGACCTT 57.539 29.630 0.00 0.00 0.00 3.50
4877 6820 9.461312 TTTTACTAACATAGATTTGCATGACCT 57.539 29.630 0.00 0.00 0.00 3.85
4935 6881 4.289672 ACACTAAGGGGATTCATGACAGTT 59.710 41.667 0.00 0.00 0.00 3.16
4958 6904 5.664294 AGTATCGTGGGTAATGTGTACAA 57.336 39.130 0.00 0.00 0.00 2.41
5010 6958 0.613260 CTTCCAACCGGGTCTCATCA 59.387 55.000 6.32 0.00 38.11 3.07
5018 6966 0.107654 GACATCCTCTTCCAACCGGG 60.108 60.000 6.32 0.00 38.37 5.73
5146 7094 7.895759 ACAATAGGTAAATTTCTGCACAATGT 58.104 30.769 0.00 0.00 0.00 2.71
5161 7109 8.534333 GATGATTAAGCATCGACAATAGGTAA 57.466 34.615 17.23 0.00 35.77 2.85
5174 7122 4.011966 TGGAGCATCGATGATTAAGCAT 57.988 40.909 29.20 5.77 34.37 3.79
5175 7123 3.473923 TGGAGCATCGATGATTAAGCA 57.526 42.857 29.20 0.00 34.37 3.91
5176 7124 4.093115 CAGATGGAGCATCGATGATTAAGC 59.907 45.833 29.20 16.76 44.67 3.09
5177 7125 5.236282 ACAGATGGAGCATCGATGATTAAG 58.764 41.667 29.20 12.57 44.67 1.85
5178 7126 5.219343 ACAGATGGAGCATCGATGATTAA 57.781 39.130 29.20 14.97 44.67 1.40
5179 7127 4.879197 ACAGATGGAGCATCGATGATTA 57.121 40.909 29.20 15.89 44.67 1.75
5180 7128 3.766068 ACAGATGGAGCATCGATGATT 57.234 42.857 29.20 15.59 44.67 2.57
5181 7129 3.766068 AACAGATGGAGCATCGATGAT 57.234 42.857 29.20 23.83 44.67 2.45
5182 7130 3.550842 CGTAACAGATGGAGCATCGATGA 60.551 47.826 29.20 8.35 44.67 2.92
5183 7131 2.728318 CGTAACAGATGGAGCATCGATG 59.272 50.000 21.27 21.27 44.67 3.84
5184 7132 2.623416 TCGTAACAGATGGAGCATCGAT 59.377 45.455 0.00 0.00 44.67 3.59
5185 7133 2.021457 TCGTAACAGATGGAGCATCGA 58.979 47.619 0.00 0.00 44.67 3.59
5186 7134 2.033424 TCTCGTAACAGATGGAGCATCG 59.967 50.000 0.00 0.00 44.67 3.84
5187 7135 3.717400 TCTCGTAACAGATGGAGCATC 57.283 47.619 0.00 0.00 40.80 3.91
5188 7136 4.679373 AATCTCGTAACAGATGGAGCAT 57.321 40.909 0.00 0.00 33.13 3.79
5189 7137 4.471904 AAATCTCGTAACAGATGGAGCA 57.528 40.909 0.00 0.00 33.13 4.26
5190 7138 4.271291 GGAAAATCTCGTAACAGATGGAGC 59.729 45.833 0.00 0.00 33.13 4.70
5191 7139 5.665459 AGGAAAATCTCGTAACAGATGGAG 58.335 41.667 0.00 0.00 33.13 3.86
5192 7140 5.677319 AGGAAAATCTCGTAACAGATGGA 57.323 39.130 0.00 0.00 33.13 3.41
5193 7141 8.438676 AATTAGGAAAATCTCGTAACAGATGG 57.561 34.615 0.00 0.00 37.25 3.51
5194 7142 9.708222 CAAATTAGGAAAATCTCGTAACAGATG 57.292 33.333 0.00 0.00 37.25 2.90
5195 7143 9.667107 TCAAATTAGGAAAATCTCGTAACAGAT 57.333 29.630 0.00 0.00 37.25 2.90
5196 7144 9.496873 TTCAAATTAGGAAAATCTCGTAACAGA 57.503 29.630 0.00 0.00 37.25 3.41
5197 7145 9.760660 CTTCAAATTAGGAAAATCTCGTAACAG 57.239 33.333 0.00 0.00 37.25 3.16
5198 7146 9.280174 ACTTCAAATTAGGAAAATCTCGTAACA 57.720 29.630 0.00 0.00 37.25 2.41
5199 7147 9.543018 CACTTCAAATTAGGAAAATCTCGTAAC 57.457 33.333 0.00 0.00 37.25 2.50
5200 7148 9.496873 TCACTTCAAATTAGGAAAATCTCGTAA 57.503 29.630 0.00 0.00 38.43 3.18
5201 7149 8.932791 GTCACTTCAAATTAGGAAAATCTCGTA 58.067 33.333 0.00 0.00 0.00 3.43
5202 7150 7.444183 TGTCACTTCAAATTAGGAAAATCTCGT 59.556 33.333 0.00 0.00 0.00 4.18
5203 7151 7.806690 TGTCACTTCAAATTAGGAAAATCTCG 58.193 34.615 0.00 0.00 0.00 4.04
5204 7152 9.399403 GTTGTCACTTCAAATTAGGAAAATCTC 57.601 33.333 0.00 0.00 0.00 2.75
5205 7153 8.912988 TGTTGTCACTTCAAATTAGGAAAATCT 58.087 29.630 0.00 0.00 0.00 2.40
5206 7154 9.696917 ATGTTGTCACTTCAAATTAGGAAAATC 57.303 29.630 0.00 0.00 0.00 2.17
5207 7155 9.480053 CATGTTGTCACTTCAAATTAGGAAAAT 57.520 29.630 0.00 0.00 0.00 1.82
5208 7156 7.437862 GCATGTTGTCACTTCAAATTAGGAAAA 59.562 33.333 0.00 0.00 0.00 2.29
5209 7157 6.922957 GCATGTTGTCACTTCAAATTAGGAAA 59.077 34.615 0.00 0.00 0.00 3.13
5210 7158 6.265196 AGCATGTTGTCACTTCAAATTAGGAA 59.735 34.615 0.00 0.00 0.00 3.36
5211 7159 5.769662 AGCATGTTGTCACTTCAAATTAGGA 59.230 36.000 0.00 0.00 0.00 2.94
5212 7160 6.017400 AGCATGTTGTCACTTCAAATTAGG 57.983 37.500 0.00 0.00 0.00 2.69
5213 7161 9.630098 ATTAAGCATGTTGTCACTTCAAATTAG 57.370 29.630 0.00 0.00 0.00 1.73
5241 7189 6.147581 TCAACTATATTAGAACCGCATCGAC 58.852 40.000 0.00 0.00 0.00 4.20
5248 7196 7.042658 GGCAAGAACTCAACTATATTAGAACCG 60.043 40.741 0.00 0.00 0.00 4.44
5292 7240 4.508551 ACTAGATGGAATGTGGCAATGA 57.491 40.909 0.00 0.00 0.00 2.57
5305 7253 5.832539 AATGGGAGGATGTTACTAGATGG 57.167 43.478 0.00 0.00 0.00 3.51
5338 7297 3.245158 CCCATCCAACATCTATGCTCCAT 60.245 47.826 0.00 0.00 0.00 3.41
5501 7460 5.526111 GGCTTGTAGTGTACTGAAACTGAAA 59.474 40.000 0.00 0.00 0.00 2.69
5647 7606 2.918131 GCAAATGCGACAGACAGTTTCC 60.918 50.000 0.00 0.00 0.00 3.13
5725 7696 0.392998 CAACAATGCTAGCCCGGACT 60.393 55.000 13.29 0.00 0.00 3.85
5741 7712 2.031683 ACGTCAGTTTTACTGCAGCAAC 59.968 45.455 15.27 14.24 45.54 4.17
5777 7748 2.902486 AGATCAGTCTCCAAACTGCAGA 59.098 45.455 23.35 0.00 45.12 4.26
5830 7801 2.225369 TGTGGAGGGAGACTCTTCATCA 60.225 50.000 1.74 2.26 45.83 3.07
5842 7813 8.685257 ATCATCAATACTATATTGTGGAGGGA 57.315 34.615 8.11 0.00 0.00 4.20
5940 7911 5.292765 ACAGAACATACAGAATATGCTCGG 58.707 41.667 0.00 0.00 0.00 4.63
5942 7913 8.879342 ACTTACAGAACATACAGAATATGCTC 57.121 34.615 0.00 0.00 0.00 4.26
5960 7931 9.403110 ACAATACGTCACTTTAGTTACTTACAG 57.597 33.333 0.00 0.00 0.00 2.74
5963 7934 9.559958 GCTACAATACGTCACTTTAGTTACTTA 57.440 33.333 0.00 0.00 0.00 2.24
5964 7935 7.543520 GGCTACAATACGTCACTTTAGTTACTT 59.456 37.037 0.00 0.00 0.00 2.24
5965 7936 7.031975 GGCTACAATACGTCACTTTAGTTACT 58.968 38.462 0.00 0.00 0.00 2.24
5966 7937 6.808212 TGGCTACAATACGTCACTTTAGTTAC 59.192 38.462 0.00 0.00 0.00 2.50
5967 7938 6.808212 GTGGCTACAATACGTCACTTTAGTTA 59.192 38.462 0.00 0.00 0.00 2.24
5968 7939 5.636543 GTGGCTACAATACGTCACTTTAGTT 59.363 40.000 0.00 0.00 0.00 2.24
5969 7940 5.166398 GTGGCTACAATACGTCACTTTAGT 58.834 41.667 0.00 0.00 0.00 2.24
5970 7941 5.061808 GTGTGGCTACAATACGTCACTTTAG 59.938 44.000 3.74 0.00 38.82 1.85
5971 7942 4.925054 GTGTGGCTACAATACGTCACTTTA 59.075 41.667 3.74 0.00 38.82 1.85
5973 7944 3.243941 TGTGTGGCTACAATACGTCACTT 60.244 43.478 3.74 0.00 38.82 3.16
5974 7945 2.297880 TGTGTGGCTACAATACGTCACT 59.702 45.455 3.74 0.00 38.82 3.41
5975 7946 2.679450 TGTGTGGCTACAATACGTCAC 58.321 47.619 3.74 0.00 38.82 3.67
5976 7947 3.388345 TTGTGTGGCTACAATACGTCA 57.612 42.857 3.74 0.00 38.82 4.35
5977 7948 5.005394 CACTATTGTGTGGCTACAATACGTC 59.995 44.000 17.77 0.00 46.40 4.34
5996 7976 9.640963 GAGTACTCATACAAAACTTCACACTAT 57.359 33.333 18.20 0.00 33.30 2.12
6014 7994 2.483106 GCAGTACACGTCTGAGTACTCA 59.517 50.000 23.80 23.80 45.58 3.41
6015 7995 2.743126 AGCAGTACACGTCTGAGTACTC 59.257 50.000 16.32 16.32 45.58 2.59
6030 8022 4.412199 AGGCCTTGATTATGGTTAGCAGTA 59.588 41.667 0.00 0.00 0.00 2.74
6031 8023 3.203040 AGGCCTTGATTATGGTTAGCAGT 59.797 43.478 0.00 0.00 0.00 4.40
6032 8024 3.567164 CAGGCCTTGATTATGGTTAGCAG 59.433 47.826 0.00 0.00 0.00 4.24
6033 8025 3.053693 ACAGGCCTTGATTATGGTTAGCA 60.054 43.478 0.00 0.00 0.00 3.49
6034 8026 3.316308 CACAGGCCTTGATTATGGTTAGC 59.684 47.826 0.00 0.00 0.00 3.09
6035 8027 4.576463 GTCACAGGCCTTGATTATGGTTAG 59.424 45.833 17.14 0.00 0.00 2.34
6036 8028 4.227300 AGTCACAGGCCTTGATTATGGTTA 59.773 41.667 17.14 0.00 0.00 2.85
6037 8029 3.010584 AGTCACAGGCCTTGATTATGGTT 59.989 43.478 17.14 0.92 0.00 3.67
6038 8030 2.578021 AGTCACAGGCCTTGATTATGGT 59.422 45.455 17.14 2.03 0.00 3.55
6039 8031 3.209410 GAGTCACAGGCCTTGATTATGG 58.791 50.000 17.14 1.42 0.00 2.74
6040 8032 3.209410 GGAGTCACAGGCCTTGATTATG 58.791 50.000 17.14 3.00 0.00 1.90
6041 8033 2.846206 TGGAGTCACAGGCCTTGATTAT 59.154 45.455 17.14 9.25 0.00 1.28
6042 8034 2.265367 TGGAGTCACAGGCCTTGATTA 58.735 47.619 17.14 5.58 0.00 1.75
6043 8035 1.067295 TGGAGTCACAGGCCTTGATT 58.933 50.000 17.14 14.10 0.00 2.57
6044 8036 1.211457 GATGGAGTCACAGGCCTTGAT 59.789 52.381 17.14 9.08 0.00 2.57
6045 8037 0.615331 GATGGAGTCACAGGCCTTGA 59.385 55.000 0.00 8.13 0.00 3.02
6046 8038 0.393537 GGATGGAGTCACAGGCCTTG 60.394 60.000 0.00 5.46 0.00 3.61
6047 8039 0.842030 TGGATGGAGTCACAGGCCTT 60.842 55.000 0.00 0.00 0.00 4.35
6048 8040 0.842030 TTGGATGGAGTCACAGGCCT 60.842 55.000 0.00 0.00 0.00 5.19
6049 8041 0.678048 GTTGGATGGAGTCACAGGCC 60.678 60.000 0.00 0.00 0.00 5.19
6079 8071 8.930846 ATTCTCCATCGGAATAAGAATTTGAT 57.069 30.769 6.39 0.00 32.43 2.57
6119 8111 8.521176 GGGTGAGAACATTATACAGATATACGT 58.479 37.037 0.00 0.00 0.00 3.57
6120 8112 7.696872 CGGGTGAGAACATTATACAGATATACG 59.303 40.741 0.00 0.00 0.00 3.06
6121 8113 7.488471 GCGGGTGAGAACATTATACAGATATAC 59.512 40.741 0.00 0.00 0.00 1.47
6122 8114 7.177744 TGCGGGTGAGAACATTATACAGATATA 59.822 37.037 0.00 0.00 0.00 0.86
6123 8115 6.014584 TGCGGGTGAGAACATTATACAGATAT 60.015 38.462 0.00 0.00 0.00 1.63
6132 8124 0.687920 TGGTGCGGGTGAGAACATTA 59.312 50.000 0.00 0.00 0.00 1.90
6167 8160 3.968649 TCAGTACTTGGTGTGGGTTCTTA 59.031 43.478 0.00 0.00 0.00 2.10
6183 8176 4.375105 CGAAACGTTCTCTGCTTTCAGTAC 60.375 45.833 0.00 0.00 41.10 2.73
6192 8185 3.854286 TCTTTTCGAAACGTTCTCTGC 57.146 42.857 10.79 0.00 0.00 4.26
6193 8186 7.665080 AATTTTCTTTTCGAAACGTTCTCTG 57.335 32.000 10.79 0.00 41.13 3.35
6195 8188 8.099746 TCAAATTTTCTTTTCGAAACGTTCTC 57.900 30.769 10.79 0.74 41.13 2.87
6196 8189 7.220108 CCTCAAATTTTCTTTTCGAAACGTTCT 59.780 33.333 10.79 0.00 41.13 3.01
6197 8190 7.327378 CCTCAAATTTTCTTTTCGAAACGTTC 58.673 34.615 10.79 0.00 41.13 3.95
6198 8191 6.254804 CCCTCAAATTTTCTTTTCGAAACGTT 59.745 34.615 10.79 0.00 41.13 3.99
6199 8192 5.746721 CCCTCAAATTTTCTTTTCGAAACGT 59.253 36.000 10.79 0.00 41.13 3.99
6200 8193 5.174943 CCCCTCAAATTTTCTTTTCGAAACG 59.825 40.000 10.79 9.26 41.13 3.60
6201 8194 5.050363 GCCCCTCAAATTTTCTTTTCGAAAC 60.050 40.000 10.79 0.00 41.13 2.78
6202 8195 5.053811 GCCCCTCAAATTTTCTTTTCGAAA 58.946 37.500 6.47 6.47 39.76 3.46
6203 8196 4.100189 TGCCCCTCAAATTTTCTTTTCGAA 59.900 37.500 0.00 0.00 0.00 3.71
6204 8197 3.639094 TGCCCCTCAAATTTTCTTTTCGA 59.361 39.130 0.00 0.00 0.00 3.71
6205 8198 3.988819 TGCCCCTCAAATTTTCTTTTCG 58.011 40.909 0.00 0.00 0.00 3.46
6206 8199 5.011023 TCTCTGCCCCTCAAATTTTCTTTTC 59.989 40.000 0.00 0.00 0.00 2.29
6207 8200 4.901250 TCTCTGCCCCTCAAATTTTCTTTT 59.099 37.500 0.00 0.00 0.00 2.27
6208 8201 4.482990 TCTCTGCCCCTCAAATTTTCTTT 58.517 39.130 0.00 0.00 0.00 2.52
6209 8202 4.118168 TCTCTGCCCCTCAAATTTTCTT 57.882 40.909 0.00 0.00 0.00 2.52
6210 8203 3.814504 TCTCTGCCCCTCAAATTTTCT 57.185 42.857 0.00 0.00 0.00 2.52
6211 8204 3.366374 CGTTCTCTGCCCCTCAAATTTTC 60.366 47.826 0.00 0.00 0.00 2.29
6212 8205 2.558359 CGTTCTCTGCCCCTCAAATTTT 59.442 45.455 0.00 0.00 0.00 1.82
6213 8206 2.162681 CGTTCTCTGCCCCTCAAATTT 58.837 47.619 0.00 0.00 0.00 1.82
6214 8207 1.073923 ACGTTCTCTGCCCCTCAAATT 59.926 47.619 0.00 0.00 0.00 1.82
6215 8208 0.693049 ACGTTCTCTGCCCCTCAAAT 59.307 50.000 0.00 0.00 0.00 2.32
6216 8209 0.472471 AACGTTCTCTGCCCCTCAAA 59.528 50.000 0.00 0.00 0.00 2.69
6217 8210 0.472471 AAACGTTCTCTGCCCCTCAA 59.528 50.000 0.00 0.00 0.00 3.02
6218 8211 0.034896 GAAACGTTCTCTGCCCCTCA 59.965 55.000 0.00 0.00 0.00 3.86
6219 8212 0.034896 TGAAACGTTCTCTGCCCCTC 59.965 55.000 0.00 0.00 0.00 4.30
6220 8213 0.472471 TTGAAACGTTCTCTGCCCCT 59.528 50.000 0.00 0.00 0.00 4.79
6221 8214 1.314730 TTTGAAACGTTCTCTGCCCC 58.685 50.000 0.00 0.00 0.00 5.80
6222 8215 2.922335 GCATTTGAAACGTTCTCTGCCC 60.922 50.000 0.00 0.00 0.00 5.36
6223 8216 2.030805 AGCATTTGAAACGTTCTCTGCC 60.031 45.455 0.00 0.00 32.97 4.85
6224 8217 3.273919 AGCATTTGAAACGTTCTCTGC 57.726 42.857 0.00 7.18 32.83 4.26
6225 8218 4.847633 TCAAGCATTTGAAACGTTCTCTG 58.152 39.130 0.00 0.00 40.26 3.35
6271 8264 1.875963 CACAACGAGCCCATGGAAC 59.124 57.895 15.22 4.77 0.00 3.62
6284 8277 1.212751 GGCCCTCATTTCGCACAAC 59.787 57.895 0.00 0.00 0.00 3.32
6295 8288 0.841961 CATCTTGAGATGGGCCCTCA 59.158 55.000 25.70 16.34 46.09 3.86
6314 8307 3.611766 GCCGGTTGAGAGAAAAATGGAAC 60.612 47.826 1.90 0.00 0.00 3.62
6321 8314 2.356135 GCTATGCCGGTTGAGAGAAAA 58.644 47.619 1.90 0.00 0.00 2.29
6322 8315 1.406887 GGCTATGCCGGTTGAGAGAAA 60.407 52.381 1.90 0.00 39.62 2.52
6323 8316 0.178068 GGCTATGCCGGTTGAGAGAA 59.822 55.000 1.90 0.00 39.62 2.87
6324 8317 1.823295 GGCTATGCCGGTTGAGAGA 59.177 57.895 1.90 0.00 39.62 3.10
6325 8318 4.445699 GGCTATGCCGGTTGAGAG 57.554 61.111 1.90 0.00 39.62 3.20
6335 8328 6.961554 GCAATTTACTCGTATTATGGCTATGC 59.038 38.462 0.00 0.00 0.00 3.14
6336 8329 7.957484 GTGCAATTTACTCGTATTATGGCTATG 59.043 37.037 0.00 0.00 0.00 2.23
6337 8330 7.659799 TGTGCAATTTACTCGTATTATGGCTAT 59.340 33.333 0.00 0.00 0.00 2.97
6338 8331 6.987404 TGTGCAATTTACTCGTATTATGGCTA 59.013 34.615 0.00 0.00 0.00 3.93
6339 8332 5.820423 TGTGCAATTTACTCGTATTATGGCT 59.180 36.000 0.00 0.00 0.00 4.75
6340 8333 6.055231 TGTGCAATTTACTCGTATTATGGC 57.945 37.500 0.00 0.00 0.00 4.40
6341 8334 8.794406 GTTTTGTGCAATTTACTCGTATTATGG 58.206 33.333 0.00 0.00 0.00 2.74
6342 8335 8.794406 GGTTTTGTGCAATTTACTCGTATTATG 58.206 33.333 0.00 0.00 0.00 1.90
6343 8336 8.516234 TGGTTTTGTGCAATTTACTCGTATTAT 58.484 29.630 0.00 0.00 0.00 1.28
6344 8337 7.804129 GTGGTTTTGTGCAATTTACTCGTATTA 59.196 33.333 0.00 0.00 0.00 0.98
6345 8338 6.639279 GTGGTTTTGTGCAATTTACTCGTATT 59.361 34.615 0.00 0.00 0.00 1.89
6346 8339 6.146898 GTGGTTTTGTGCAATTTACTCGTAT 58.853 36.000 0.00 0.00 0.00 3.06
6347 8340 5.505985 GGTGGTTTTGTGCAATTTACTCGTA 60.506 40.000 0.00 0.00 0.00 3.43
6348 8341 4.356289 GTGGTTTTGTGCAATTTACTCGT 58.644 39.130 0.00 0.00 0.00 4.18
6349 8342 3.733727 GGTGGTTTTGTGCAATTTACTCG 59.266 43.478 0.00 0.00 0.00 4.18
6419 8412 4.153117 CGGAAGAGATGGTGTTTTCTGAAG 59.847 45.833 0.00 0.00 0.00 3.02
6420 8413 4.065088 CGGAAGAGATGGTGTTTTCTGAA 58.935 43.478 0.00 0.00 0.00 3.02
6421 8414 3.071023 ACGGAAGAGATGGTGTTTTCTGA 59.929 43.478 0.00 0.00 0.00 3.27
6501 8495 4.044601 AAAAAGGGGCCCCACCTA 57.955 55.556 42.48 0.00 37.35 3.08
6793 8805 0.803117 CGTCGTCAGAACCAGAGCTA 59.197 55.000 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.