Multiple sequence alignment - TraesCS2A01G359800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G359800 chr2A 100.000 3662 0 0 1 3662 603564873 603561212 0.000000e+00 6763.0
1 TraesCS2A01G359800 chr2D 95.321 2180 65 21 760 2931 460763076 460760926 0.000000e+00 3426.0
2 TraesCS2A01G359800 chr2D 87.979 757 47 25 2929 3662 460760823 460760088 0.000000e+00 854.0
3 TraesCS2A01G359800 chr2D 85.805 627 54 20 1 606 460772005 460771393 1.860000e-177 632.0
4 TraesCS2A01G359800 chr2B 95.152 1382 46 8 1555 2931 542265408 542264043 0.000000e+00 2161.0
5 TraesCS2A01G359800 chr2B 88.323 942 57 23 243 1141 542266333 542265402 0.000000e+00 1081.0
6 TraesCS2A01G359800 chr2B 92.617 149 9 2 1540 1688 411513724 411513578 2.860000e-51 213.0
7 TraesCS2A01G359800 chr2B 93.382 136 7 1 1334 1469 411513845 411513712 2.230000e-47 200.0
8 TraesCS2A01G359800 chr2B 93.277 119 7 1 1772 1890 411513581 411513464 1.350000e-39 174.0
9 TraesCS2A01G359800 chr2B 89.844 128 7 4 1 128 542266770 542266649 3.790000e-35 159.0
10 TraesCS2A01G359800 chr2B 83.626 171 16 7 3254 3417 542263665 542263500 2.280000e-32 150.0
11 TraesCS2A01G359800 chr3B 95.000 60 3 0 2872 2931 513659047 513659106 1.080000e-15 95.3
12 TraesCS2A01G359800 chr3B 91.837 49 4 0 1395 1443 808332833 808332881 6.560000e-08 69.4
13 TraesCS2A01G359800 chr4B 93.878 49 3 0 1395 1443 535055081 535055033 1.410000e-09 75.0
14 TraesCS2A01G359800 chr7B 97.368 38 1 0 1395 1432 701340487 701340524 8.490000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G359800 chr2A 603561212 603564873 3661 True 6763.00 6763 100.00000 1 3662 1 chr2A.!!$R1 3661
1 TraesCS2A01G359800 chr2D 460760088 460763076 2988 True 2140.00 3426 91.65000 760 3662 2 chr2D.!!$R2 2902
2 TraesCS2A01G359800 chr2D 460771393 460772005 612 True 632.00 632 85.80500 1 606 1 chr2D.!!$R1 605
3 TraesCS2A01G359800 chr2B 542263500 542266770 3270 True 887.75 2161 89.23625 1 3417 4 chr2B.!!$R2 3416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1075 0.098552 CAGCACGAACAAGCAACACA 59.901 50.0 0.0 0.0 0.00 3.72 F
852 1076 0.098728 AGCACGAACAAGCAACACAC 59.901 50.0 0.0 0.0 0.00 3.82 F
1743 2409 1.495878 GTAGCGACATGATCCTGCTG 58.504 55.0 0.0 0.0 37.12 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 2391 0.390492 CCAGCAGGATCATGTCGCTA 59.610 55.0 9.42 0.0 36.89 4.26 R
1884 2550 0.759346 ACTCAAGCTTGAACCGGTCT 59.241 50.0 28.16 0.0 36.64 3.85 R
3017 3801 0.314302 AACTGAGACGTGGAAGGACG 59.686 55.0 0.00 0.0 45.09 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 0.664466 GCGGTTTCTTCAGCTTTGGC 60.664 55.000 0.00 0.00 39.06 4.52
94 95 0.385974 CGGTTTCTTCAGCTTTGGCG 60.386 55.000 0.00 0.00 44.37 5.69
98 99 0.465460 TTCTTCAGCTTTGGCGTGGT 60.465 50.000 0.00 0.00 44.37 4.16
99 100 1.165907 TCTTCAGCTTTGGCGTGGTG 61.166 55.000 0.00 0.00 44.37 4.17
100 101 1.447317 CTTCAGCTTTGGCGTGGTGT 61.447 55.000 0.00 0.00 44.37 4.16
101 102 1.034838 TTCAGCTTTGGCGTGGTGTT 61.035 50.000 0.00 0.00 44.37 3.32
102 103 1.008538 CAGCTTTGGCGTGGTGTTC 60.009 57.895 0.00 0.00 44.37 3.18
103 104 2.051345 GCTTTGGCGTGGTGTTCG 60.051 61.111 0.00 0.00 0.00 3.95
104 105 2.830285 GCTTTGGCGTGGTGTTCGT 61.830 57.895 0.00 0.00 0.00 3.85
138 139 2.356780 CCACTACCCCGTCACTCCC 61.357 68.421 0.00 0.00 0.00 4.30
145 150 2.603473 CCGTCACTCCCCAGTCCA 60.603 66.667 0.00 0.00 0.00 4.02
146 151 2.657237 CGTCACTCCCCAGTCCAC 59.343 66.667 0.00 0.00 0.00 4.02
147 152 2.943978 CGTCACTCCCCAGTCCACC 61.944 68.421 0.00 0.00 0.00 4.61
148 153 2.203938 TCACTCCCCAGTCCACCC 60.204 66.667 0.00 0.00 0.00 4.61
149 154 2.529136 CACTCCCCAGTCCACCCA 60.529 66.667 0.00 0.00 0.00 4.51
150 155 2.529389 ACTCCCCAGTCCACCCAC 60.529 66.667 0.00 0.00 0.00 4.61
173 181 2.817258 CCAACGGCTAGGAATCACAAAA 59.183 45.455 0.00 0.00 0.00 2.44
177 185 4.192317 ACGGCTAGGAATCACAAAATCTC 58.808 43.478 0.00 0.00 0.00 2.75
200 208 1.069090 GTGCAACCACACTCCTCGA 59.931 57.895 0.00 0.00 41.67 4.04
201 209 1.069090 TGCAACCACACTCCTCGAC 59.931 57.895 0.00 0.00 0.00 4.20
202 210 1.668151 GCAACCACACTCCTCGACC 60.668 63.158 0.00 0.00 0.00 4.79
203 211 1.004918 CAACCACACTCCTCGACCC 60.005 63.158 0.00 0.00 0.00 4.46
204 212 1.152312 AACCACACTCCTCGACCCT 60.152 57.895 0.00 0.00 0.00 4.34
205 213 1.186267 AACCACACTCCTCGACCCTC 61.186 60.000 0.00 0.00 0.00 4.30
206 214 2.701780 CCACACTCCTCGACCCTCG 61.702 68.421 0.00 0.00 42.10 4.63
207 215 1.972223 CACACTCCTCGACCCTCGT 60.972 63.158 0.00 0.00 41.35 4.18
221 229 4.651008 TCGTCGTCGCCGGCTTTT 62.651 61.111 26.68 0.00 36.28 2.27
222 230 4.130281 CGTCGTCGCCGGCTTTTC 62.130 66.667 26.68 10.70 36.28 2.29
223 231 2.737376 GTCGTCGCCGGCTTTTCT 60.737 61.111 26.68 0.00 35.32 2.52
224 232 2.736995 TCGTCGCCGGCTTTTCTG 60.737 61.111 26.68 7.77 33.95 3.02
225 233 4.445545 CGTCGCCGGCTTTTCTGC 62.446 66.667 26.68 5.32 0.00 4.26
226 234 3.050275 GTCGCCGGCTTTTCTGCT 61.050 61.111 26.68 0.00 0.00 4.24
227 235 3.049674 TCGCCGGCTTTTCTGCTG 61.050 61.111 26.68 5.22 38.94 4.41
231 239 2.674380 CGGCTTTTCTGCTGCCCT 60.674 61.111 0.00 0.00 43.42 5.19
232 240 2.694760 CGGCTTTTCTGCTGCCCTC 61.695 63.158 0.00 0.00 43.42 4.30
233 241 2.346541 GGCTTTTCTGCTGCCCTCC 61.347 63.158 0.00 0.00 40.71 4.30
234 242 1.303970 GCTTTTCTGCTGCCCTCCT 60.304 57.895 0.00 0.00 0.00 3.69
235 243 0.897401 GCTTTTCTGCTGCCCTCCTT 60.897 55.000 0.00 0.00 0.00 3.36
236 244 1.625511 CTTTTCTGCTGCCCTCCTTT 58.374 50.000 0.00 0.00 0.00 3.11
237 245 1.966354 CTTTTCTGCTGCCCTCCTTTT 59.034 47.619 0.00 0.00 0.00 2.27
238 246 1.620822 TTTCTGCTGCCCTCCTTTTC 58.379 50.000 0.00 0.00 0.00 2.29
241 444 1.172175 CTGCTGCCCTCCTTTTCTTC 58.828 55.000 0.00 0.00 0.00 2.87
249 452 1.298859 CTCCTTTTCTTCCACGGCGG 61.299 60.000 13.24 0.00 0.00 6.13
277 480 0.251341 AGGAGCTGATGCCCGTTTTT 60.251 50.000 0.00 0.00 40.80 1.94
321 524 0.463474 GGTCCTCAGCCAAGCATCTC 60.463 60.000 0.00 0.00 0.00 2.75
362 565 0.103937 GCACTAGCCTCCACTAGCAG 59.896 60.000 0.00 0.00 42.91 4.24
363 566 1.479709 CACTAGCCTCCACTAGCAGT 58.520 55.000 0.00 0.00 42.91 4.40
391 594 0.521291 CACGCCGACCATTTCATTGT 59.479 50.000 0.00 0.00 0.00 2.71
437 640 5.703978 ACAAACAACAAATGATCATCCGA 57.296 34.783 9.06 0.00 0.00 4.55
481 684 7.609760 TGTCAAACATGACATGGAGTATTAC 57.390 36.000 19.39 8.46 43.09 1.89
512 715 2.420722 TCCGTTATTTGGATGGAAACGC 59.579 45.455 0.00 0.00 41.04 4.84
524 727 1.643832 GAAACGCCGGAGCATCATC 59.356 57.895 5.05 0.00 39.83 2.92
525 728 1.078497 AAACGCCGGAGCATCATCA 60.078 52.632 5.05 0.00 39.83 3.07
526 729 0.676466 AAACGCCGGAGCATCATCAA 60.676 50.000 5.05 0.00 39.83 2.57
527 730 1.091771 AACGCCGGAGCATCATCAAG 61.092 55.000 5.05 0.00 39.83 3.02
537 740 1.412074 GCATCATCAAGGGGGTTGGAT 60.412 52.381 0.00 0.00 36.71 3.41
539 742 0.926293 TCATCAAGGGGGTTGGATCC 59.074 55.000 4.20 4.20 36.71 3.36
589 792 1.368579 GCAGCAACCAAAGCCATGT 59.631 52.632 0.00 0.00 0.00 3.21
626 829 1.098050 AGCGATGTTTGGATGCCTTC 58.902 50.000 0.00 0.00 0.00 3.46
632 835 4.437390 CGATGTTTGGATGCCTTCAAGTAC 60.437 45.833 0.00 0.00 0.00 2.73
665 869 4.656041 CTTCTTTGCGAAGGACATGAATC 58.344 43.478 13.87 0.00 44.37 2.52
681 885 2.301346 GAATCCATACAGGCCAGTTGG 58.699 52.381 5.94 13.74 37.29 3.77
682 886 1.595311 ATCCATACAGGCCAGTTGGA 58.405 50.000 24.08 24.08 40.54 3.53
717 928 4.189188 GCCGCCAGCTGAAGCATG 62.189 66.667 17.39 6.22 45.16 4.06
726 949 1.300971 GCTGAAGCATGAGCCACGAA 61.301 55.000 0.00 0.00 43.56 3.85
728 951 0.321346 TGAAGCATGAGCCACGAAGA 59.679 50.000 0.00 0.00 43.56 2.87
738 961 0.237235 GCCACGAAGACGCAAAATCA 59.763 50.000 0.00 0.00 43.96 2.57
774 997 2.993899 CGGCAACAAAGTACTCCACTAG 59.006 50.000 0.00 0.00 36.04 2.57
851 1075 0.098552 CAGCACGAACAAGCAACACA 59.901 50.000 0.00 0.00 0.00 3.72
852 1076 0.098728 AGCACGAACAAGCAACACAC 59.901 50.000 0.00 0.00 0.00 3.82
864 1088 3.403038 AGCAACACACTGATAACTCCAC 58.597 45.455 0.00 0.00 0.00 4.02
867 1091 3.577649 ACACACTGATAACTCCACTCG 57.422 47.619 0.00 0.00 0.00 4.18
895 1119 9.398170 CAATCATTATCCGCGATTAAATTTTCT 57.602 29.630 8.23 0.00 0.00 2.52
1083 1329 2.654912 CGTCGACGCCAACCTCAAC 61.655 63.158 26.59 0.00 0.00 3.18
1179 1425 3.470567 GAGACGTTGACGCGCCAG 61.471 66.667 5.73 0.00 44.43 4.85
1194 1440 4.087892 CAGGACCGGGACCAGCAG 62.088 72.222 17.70 1.17 0.00 4.24
1263 1509 2.045340 CCGGAATGGGTGGTGACC 60.045 66.667 0.00 0.00 42.27 4.02
1264 1510 2.753701 CGGAATGGGTGGTGACCA 59.246 61.111 0.00 0.00 45.25 4.02
1274 1520 4.090588 GGTGACCATCCGCGGGAA 62.091 66.667 27.83 7.28 34.34 3.97
1275 1521 2.511600 GTGACCATCCGCGGGAAG 60.512 66.667 27.83 16.33 34.34 3.46
1276 1522 4.467084 TGACCATCCGCGGGAAGC 62.467 66.667 27.83 11.96 43.95 3.86
1277 1523 4.162690 GACCATCCGCGGGAAGCT 62.163 66.667 27.83 3.88 45.59 3.74
1278 1524 4.473520 ACCATCCGCGGGAAGCTG 62.474 66.667 27.83 14.55 45.59 4.24
1336 1582 4.849329 GGCTCTCCGTGTACCGCG 62.849 72.222 0.00 0.00 37.10 6.46
1337 1583 4.112341 GCTCTCCGTGTACCGCGT 62.112 66.667 4.92 0.00 35.46 6.01
1338 1584 2.202440 CTCTCCGTGTACCGCGTG 60.202 66.667 4.92 0.00 35.46 5.34
1339 1585 4.409218 TCTCCGTGTACCGCGTGC 62.409 66.667 4.92 0.00 35.46 5.34
1344 1590 3.419759 GTGTACCGCGTGCCCAAG 61.420 66.667 4.92 0.00 0.00 3.61
1345 1591 3.931247 TGTACCGCGTGCCCAAGT 61.931 61.111 4.92 0.00 0.00 3.16
1346 1592 3.116531 GTACCGCGTGCCCAAGTC 61.117 66.667 4.92 0.00 0.00 3.01
1347 1593 4.728102 TACCGCGTGCCCAAGTCG 62.728 66.667 4.92 0.00 0.00 4.18
1376 1622 4.907034 CGACGAGCGCGCCTACAT 62.907 66.667 30.33 8.95 42.48 2.29
1377 1623 3.323136 GACGAGCGCGCCTACATG 61.323 66.667 30.33 13.69 42.48 3.21
1396 1642 2.815211 CGCAGGTGGTGTCCATCG 60.815 66.667 0.00 0.00 40.09 3.84
1397 1643 2.436646 GCAGGTGGTGTCCATCGG 60.437 66.667 0.00 0.00 40.09 4.18
1398 1644 2.436646 CAGGTGGTGTCCATCGGC 60.437 66.667 0.00 0.00 40.09 5.54
1399 1645 3.717294 AGGTGGTGTCCATCGGCC 61.717 66.667 0.00 0.00 40.09 6.13
1400 1646 4.796495 GGTGGTGTCCATCGGCCC 62.796 72.222 0.00 0.00 35.28 5.80
1485 1731 4.025401 CTCAAACGCACGGGCCAC 62.025 66.667 2.82 0.00 36.38 5.01
1499 1745 3.740397 CCACGACGTCACCGCCTA 61.740 66.667 17.16 0.00 37.70 3.93
1500 1746 2.503375 CACGACGTCACCGCCTAC 60.503 66.667 17.16 0.00 37.70 3.18
1501 1747 3.741476 ACGACGTCACCGCCTACC 61.741 66.667 17.16 0.00 37.70 3.18
1502 1748 3.437795 CGACGTCACCGCCTACCT 61.438 66.667 17.16 0.00 37.70 3.08
1503 1749 2.488820 GACGTCACCGCCTACCTC 59.511 66.667 11.55 0.00 37.70 3.85
1504 1750 3.392595 GACGTCACCGCCTACCTCG 62.393 68.421 11.55 0.00 37.70 4.63
1505 1751 3.129502 CGTCACCGCCTACCTCGA 61.130 66.667 0.00 0.00 0.00 4.04
1506 1752 2.488820 GTCACCGCCTACCTCGAC 59.511 66.667 0.00 0.00 0.00 4.20
1507 1753 3.129502 TCACCGCCTACCTCGACG 61.130 66.667 0.00 0.00 0.00 5.12
1508 1754 4.849329 CACCGCCTACCTCGACGC 62.849 72.222 0.00 0.00 0.00 5.19
1527 1773 4.559063 CTGCGGCCCATGGAGGAG 62.559 72.222 15.22 10.97 41.22 3.69
1533 1779 4.181010 CCCATGGAGGAGCGGGTG 62.181 72.222 15.22 0.00 41.22 4.61
1534 1780 4.864334 CCATGGAGGAGCGGGTGC 62.864 72.222 5.56 0.00 41.22 5.01
1545 1791 4.814294 CGGGTGCGGTCCTGCTAC 62.814 72.222 7.14 4.39 35.36 3.58
1546 1792 4.814294 GGGTGCGGTCCTGCTACG 62.814 72.222 7.14 0.00 35.36 3.51
1547 1793 3.755628 GGTGCGGTCCTGCTACGA 61.756 66.667 7.14 0.00 35.36 3.43
1548 1794 2.506438 GTGCGGTCCTGCTACGAC 60.506 66.667 7.14 0.00 35.36 4.34
1549 1795 4.111016 TGCGGTCCTGCTACGACG 62.111 66.667 0.00 0.00 35.36 5.12
1550 1796 4.849329 GCGGTCCTGCTACGACGG 62.849 72.222 0.00 0.00 34.62 4.79
1551 1797 4.849329 CGGTCCTGCTACGACGGC 62.849 72.222 0.00 0.00 0.00 5.68
1552 1798 4.509737 GGTCCTGCTACGACGGCC 62.510 72.222 0.00 0.00 0.00 6.13
1553 1799 4.849329 GTCCTGCTACGACGGCCG 62.849 72.222 26.86 26.86 45.44 6.13
1743 2409 1.495878 GTAGCGACATGATCCTGCTG 58.504 55.000 0.00 0.00 37.12 4.41
1902 2568 1.884235 AAGACCGGTTCAAGCTTGAG 58.116 50.000 27.02 18.53 38.61 3.02
2214 2880 2.280389 CACATCCCGCGGATCCTG 60.280 66.667 30.73 19.51 40.98 3.86
2228 2894 2.021068 ATCCTGATCCACGACGGCAG 62.021 60.000 0.00 0.00 33.14 4.85
2586 3252 2.818714 ATCGTCTCCGTCGTCGCT 60.819 61.111 0.00 0.00 35.54 4.93
2649 3315 2.095718 CAGCGCATACAGCTACTATCGA 60.096 50.000 11.47 0.00 44.06 3.59
2655 3321 1.286260 CAGCTACTATCGACCGCCC 59.714 63.158 0.00 0.00 0.00 6.13
2716 3384 0.773644 AGCAGGTGGATTGGTTCACT 59.226 50.000 0.00 0.00 34.57 3.41
2727 3395 4.023193 GGATTGGTTCACTGTTCGACATTT 60.023 41.667 0.00 0.00 0.00 2.32
2728 3396 4.974368 TTGGTTCACTGTTCGACATTTT 57.026 36.364 0.00 0.00 0.00 1.82
2729 3397 4.974368 TGGTTCACTGTTCGACATTTTT 57.026 36.364 0.00 0.00 0.00 1.94
2789 3461 4.022068 TGATTGATTGGTTGGTTCTCTTGC 60.022 41.667 0.00 0.00 0.00 4.01
2838 3511 7.477144 TTGAGTTGCATCCTGTTAATATACG 57.523 36.000 0.00 0.00 0.00 3.06
2861 3534 0.537188 TCGATTCTGGTGGGAGAAGC 59.463 55.000 0.00 0.00 35.44 3.86
2876 3552 3.876320 GGAGAAGCATTTTTGTGGCAAAA 59.124 39.130 3.26 3.26 0.00 2.44
2877 3553 4.335037 GGAGAAGCATTTTTGTGGCAAAAA 59.665 37.500 18.13 18.13 34.15 1.94
2963 3744 6.507023 CAAGGTCAAATGCTAGTCTTGTTTT 58.493 36.000 0.00 0.00 0.00 2.43
2968 3749 6.003950 TCAAATGCTAGTCTTGTTTTAGGCT 58.996 36.000 0.00 0.00 33.88 4.58
3017 3801 1.618837 GAAGAAGGCCCCAAGTTTTCC 59.381 52.381 0.00 0.00 0.00 3.13
3055 3839 8.655901 TCTCAGTTACATGTGGGCATATATAAA 58.344 33.333 9.11 0.00 33.30 1.40
3087 3881 8.572185 TCTTATCTAGATGTAGATCAGCAACAC 58.428 37.037 15.24 0.00 41.47 3.32
3145 3939 8.687242 TGAAGAGAAGATAACGACACTATGATT 58.313 33.333 0.00 0.00 0.00 2.57
3150 3944 8.068977 AGAAGATAACGACACTATGATTCGTAC 58.931 37.037 0.00 0.00 44.93 3.67
3165 3959 5.756833 TGATTCGTACGATGCTTCTACTCTA 59.243 40.000 20.27 0.00 0.00 2.43
3166 3960 5.401033 TTCGTACGATGCTTCTACTCTAC 57.599 43.478 20.27 0.00 0.00 2.59
3167 3961 4.436332 TCGTACGATGCTTCTACTCTACA 58.564 43.478 15.28 0.00 0.00 2.74
3168 3962 4.507021 TCGTACGATGCTTCTACTCTACAG 59.493 45.833 15.28 0.00 0.00 2.74
3169 3963 4.270566 CGTACGATGCTTCTACTCTACAGT 59.729 45.833 10.44 0.00 36.55 3.55
3238 4032 3.800628 GGCTTTCATTCACACAGCC 57.199 52.632 0.00 0.00 43.26 4.85
3330 4124 3.104512 TCGATGCTCTCCCCTAAGAAAA 58.895 45.455 0.00 0.00 0.00 2.29
3418 4216 5.509832 TCAGAGCATAAAGGGCATCATAT 57.490 39.130 0.00 0.00 0.00 1.78
3419 4217 6.625532 TCAGAGCATAAAGGGCATCATATA 57.374 37.500 0.00 0.00 0.00 0.86
3420 4218 6.409704 TCAGAGCATAAAGGGCATCATATAC 58.590 40.000 0.00 0.00 0.00 1.47
3422 4220 7.400052 TCAGAGCATAAAGGGCATCATATACTA 59.600 37.037 0.00 0.00 0.00 1.82
3423 4221 7.493971 CAGAGCATAAAGGGCATCATATACTAC 59.506 40.741 0.00 0.00 0.00 2.73
3434 4232 8.531982 GGGCATCATATACTACTATCAACTTGA 58.468 37.037 0.00 0.00 0.00 3.02
3441 4239 9.712305 ATATACTACTATCAACTTGACAATGGC 57.288 33.333 0.00 0.00 0.00 4.40
3472 4270 2.718663 GCAAATGTTGTGCAAAAAGCC 58.281 42.857 0.00 0.00 44.83 4.35
3473 4271 2.097142 GCAAATGTTGTGCAAAAAGCCA 59.903 40.909 0.00 0.00 44.83 4.75
3476 4274 5.341617 CAAATGTTGTGCAAAAAGCCAAAT 58.658 33.333 0.00 0.00 44.83 2.32
3477 4275 4.555348 ATGTTGTGCAAAAAGCCAAATG 57.445 36.364 0.00 0.00 44.83 2.32
3478 4276 3.341823 TGTTGTGCAAAAAGCCAAATGT 58.658 36.364 0.00 0.00 44.83 2.71
3479 4277 3.373439 TGTTGTGCAAAAAGCCAAATGTC 59.627 39.130 0.00 0.00 44.83 3.06
3480 4278 3.257469 TGTGCAAAAAGCCAAATGTCA 57.743 38.095 0.00 0.00 44.83 3.58
3482 4280 2.545106 GTGCAAAAAGCCAAATGTCAGG 59.455 45.455 0.00 0.00 44.83 3.86
3489 4287 1.188863 GCCAAATGTCAGGGCAATCT 58.811 50.000 7.81 0.00 46.92 2.40
3490 4288 1.551883 GCCAAATGTCAGGGCAATCTT 59.448 47.619 7.81 0.00 46.92 2.40
3491 4289 2.027837 GCCAAATGTCAGGGCAATCTTT 60.028 45.455 7.81 0.00 46.92 2.52
3492 4290 3.853475 CCAAATGTCAGGGCAATCTTTC 58.147 45.455 0.00 0.00 0.00 2.62
3493 4291 3.512724 CCAAATGTCAGGGCAATCTTTCT 59.487 43.478 0.00 0.00 0.00 2.52
3494 4292 4.020839 CCAAATGTCAGGGCAATCTTTCTT 60.021 41.667 0.00 0.00 0.00 2.52
3495 4293 5.511888 CCAAATGTCAGGGCAATCTTTCTTT 60.512 40.000 0.00 0.00 0.00 2.52
3496 4294 5.813513 AATGTCAGGGCAATCTTTCTTTT 57.186 34.783 0.00 0.00 0.00 2.27
3497 4295 5.813513 ATGTCAGGGCAATCTTTCTTTTT 57.186 34.783 0.00 0.00 0.00 1.94
3523 4321 6.155827 GGCAACAATATACTGTTTTCTGCAA 58.844 36.000 10.00 0.00 37.43 4.08
3556 4356 3.110447 GCAAAAAGCCAAATGTCAGGA 57.890 42.857 0.00 0.00 37.23 3.86
3565 4365 4.590222 AGCCAAATGTCAGGACAATCTTTT 59.410 37.500 6.17 0.00 45.41 2.27
3566 4366 4.925646 GCCAAATGTCAGGACAATCTTTTC 59.074 41.667 6.17 0.00 45.41 2.29
3570 4370 8.359642 CCAAATGTCAGGACAATCTTTTCTTTA 58.640 33.333 6.17 0.00 45.41 1.85
3604 4410 2.523015 GCAATCTTGAAGGAACATGCG 58.477 47.619 0.00 0.00 0.00 4.73
3644 4452 9.643693 CAATTATAAAGAACACAAAGGCTGATT 57.356 29.630 0.00 0.00 0.00 2.57
3648 4456 4.002906 AGAACACAAAGGCTGATTCGTA 57.997 40.909 0.00 0.00 32.35 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.006832 CCGCGTGTGGAGATTAAAGG 58.993 55.000 4.92 0.00 0.00 3.11
39 40 3.400599 ATTACCGGCGAGGCAAGGG 62.401 63.158 9.30 0.00 46.52 3.95
93 94 1.271549 CACGAACACGAACACCACG 59.728 57.895 0.00 0.00 0.00 4.94
94 95 1.011574 GCACGAACACGAACACCAC 60.012 57.895 0.00 0.00 0.00 4.16
98 99 2.999466 CACGCACGAACACGAACA 59.001 55.556 0.00 0.00 0.00 3.18
99 100 2.423039 GCACGCACGAACACGAAC 60.423 61.111 0.00 0.00 0.00 3.95
100 101 3.978764 CGCACGCACGAACACGAA 61.979 61.111 0.00 0.00 34.06 3.85
102 103 4.273951 AACGCACGCACGAACACG 62.274 61.111 4.54 0.00 36.70 4.49
103 104 2.423039 GAACGCACGCACGAACAC 60.423 61.111 4.54 0.00 36.70 3.32
104 105 3.632107 GGAACGCACGCACGAACA 61.632 61.111 4.54 0.00 36.70 3.18
118 119 0.901580 GGAGTGACGGGGTAGTGGAA 60.902 60.000 0.00 0.00 0.00 3.53
138 139 3.182263 TTGGGGTGGGTGGACTGG 61.182 66.667 0.00 0.00 0.00 4.00
145 150 3.327404 CTAGCCGTTGGGGTGGGT 61.327 66.667 0.00 0.00 45.56 4.51
147 152 1.921869 ATTCCTAGCCGTTGGGGTGG 61.922 60.000 0.00 0.00 45.56 4.61
148 153 0.463833 GATTCCTAGCCGTTGGGGTG 60.464 60.000 0.00 0.00 45.56 4.61
150 155 0.463833 GTGATTCCTAGCCGTTGGGG 60.464 60.000 0.00 0.00 39.58 4.96
173 181 0.392706 TGTGGTTGCACACGAGAGAT 59.607 50.000 3.32 0.00 44.21 2.75
216 224 0.897401 AAGGAGGGCAGCAGAAAAGC 60.897 55.000 0.00 0.00 0.00 3.51
221 229 0.773644 AAGAAAAGGAGGGCAGCAGA 59.226 50.000 0.00 0.00 0.00 4.26
222 230 1.172175 GAAGAAAAGGAGGGCAGCAG 58.828 55.000 0.00 0.00 0.00 4.24
223 231 0.251341 GGAAGAAAAGGAGGGCAGCA 60.251 55.000 0.00 0.00 0.00 4.41
224 232 0.251341 TGGAAGAAAAGGAGGGCAGC 60.251 55.000 0.00 0.00 0.00 5.25
225 233 1.539157 GTGGAAGAAAAGGAGGGCAG 58.461 55.000 0.00 0.00 0.00 4.85
226 234 0.250727 CGTGGAAGAAAAGGAGGGCA 60.251 55.000 0.00 0.00 0.00 5.36
227 235 0.960861 CCGTGGAAGAAAAGGAGGGC 60.961 60.000 0.00 0.00 0.00 5.19
231 239 1.302192 CCGCCGTGGAAGAAAAGGA 60.302 57.895 0.00 0.00 42.00 3.36
232 240 2.332654 CCCGCCGTGGAAGAAAAGG 61.333 63.158 0.00 0.00 42.00 3.11
233 241 1.298859 CTCCCGCCGTGGAAGAAAAG 61.299 60.000 0.00 0.00 42.00 2.27
234 242 1.302192 CTCCCGCCGTGGAAGAAAA 60.302 57.895 0.00 0.00 42.00 2.29
235 243 2.345991 CTCCCGCCGTGGAAGAAA 59.654 61.111 0.00 0.00 42.00 2.52
236 244 3.702048 CCTCCCGCCGTGGAAGAA 61.702 66.667 0.00 0.00 42.00 2.52
238 246 4.760047 CACCTCCCGCCGTGGAAG 62.760 72.222 0.00 0.00 42.00 3.46
249 452 2.373707 ATCAGCTCCTGCCACCTCC 61.374 63.158 0.00 0.00 40.80 4.30
293 496 1.518903 GGCTGAGGACCAACAGTTGC 61.519 60.000 7.88 0.00 36.62 4.17
299 502 0.610232 ATGCTTGGCTGAGGACCAAC 60.610 55.000 0.00 0.00 42.23 3.77
321 524 3.376540 GCGACATAGAGCTCAGGTTAAG 58.623 50.000 17.77 7.58 0.00 1.85
391 594 2.838974 TTGCATGTCAACGGCGCAA 61.839 52.632 10.83 0.00 40.08 4.85
420 623 3.379372 AGCCTTCGGATGATCATTTGTTG 59.621 43.478 10.14 1.27 0.00 3.33
481 684 9.062524 TCCATCCAAATAACGGATATGTTTAAG 57.937 33.333 0.00 0.00 41.48 1.85
512 715 1.228063 CCCCTTGATGATGCTCCGG 60.228 63.158 0.00 0.00 0.00 5.14
524 727 0.929244 ATCAGGATCCAACCCCCTTG 59.071 55.000 15.82 0.26 0.00 3.61
525 728 1.698874 AATCAGGATCCAACCCCCTT 58.301 50.000 15.82 0.00 0.00 3.95
526 729 2.422746 CTAATCAGGATCCAACCCCCT 58.577 52.381 15.82 0.00 0.00 4.79
527 730 1.425448 CCTAATCAGGATCCAACCCCC 59.575 57.143 15.82 0.00 45.91 5.40
539 742 6.090483 ACCTAATCACGTCATCCTAATCAG 57.910 41.667 0.00 0.00 0.00 2.90
559 762 1.615392 GGTTGCTGCAAGATTCAACCT 59.385 47.619 16.53 0.00 45.43 3.50
626 829 5.613358 AAGAAGAGGAATTTGCGTACTTG 57.387 39.130 0.00 0.00 0.00 3.16
655 859 2.158623 TGGCCTGTATGGATTCATGTCC 60.159 50.000 3.32 0.00 38.35 4.02
658 862 3.219176 ACTGGCCTGTATGGATTCATG 57.781 47.619 14.47 0.00 38.35 3.07
663 867 1.492176 CTCCAACTGGCCTGTATGGAT 59.508 52.381 29.24 11.16 39.33 3.41
665 869 0.620556 ACTCCAACTGGCCTGTATGG 59.379 55.000 24.93 24.93 39.35 2.74
717 928 0.517316 ATTTTGCGTCTTCGTGGCTC 59.483 50.000 0.00 0.00 39.49 4.70
726 949 1.160137 GGTGCTCTGATTTTGCGTCT 58.840 50.000 0.00 0.00 0.00 4.18
728 951 1.868997 CGGTGCTCTGATTTTGCGT 59.131 52.632 0.00 0.00 0.00 5.24
774 997 1.142097 GCTGCCGAGTACTCCTTCC 59.858 63.158 17.23 3.87 0.00 3.46
808 1031 7.981142 TGTACTGAAATAATGGAATTTCGTCC 58.019 34.615 0.00 0.00 45.04 4.79
811 1034 7.429340 GTGCTGTACTGAAATAATGGAATTTCG 59.571 37.037 3.61 3.50 45.04 3.46
821 1044 5.333798 GCTTGTTCGTGCTGTACTGAAATAA 60.334 40.000 3.61 4.34 0.00 1.40
824 1047 2.286833 GCTTGTTCGTGCTGTACTGAAA 59.713 45.455 3.61 0.00 0.00 2.69
827 1050 1.217001 TGCTTGTTCGTGCTGTACTG 58.783 50.000 0.00 0.00 0.00 2.74
851 1075 4.462834 TGATTGACGAGTGGAGTTATCAGT 59.537 41.667 0.00 0.00 0.00 3.41
852 1076 4.998788 TGATTGACGAGTGGAGTTATCAG 58.001 43.478 0.00 0.00 0.00 2.90
864 1088 2.661594 TCGCGGATAATGATTGACGAG 58.338 47.619 6.13 0.35 0.00 4.18
867 1091 8.728088 AAATTTAATCGCGGATAATGATTGAC 57.272 30.769 6.13 0.00 34.40 3.18
1029 1275 0.807667 GCGTGATGAGGTACCAGCTG 60.808 60.000 15.94 6.78 0.00 4.24
1154 1400 4.373116 TCAACGTCTCCGCTGCCC 62.373 66.667 0.00 0.00 37.70 5.36
1155 1401 3.112709 GTCAACGTCTCCGCTGCC 61.113 66.667 0.00 0.00 37.70 4.85
1156 1402 3.470567 CGTCAACGTCTCCGCTGC 61.471 66.667 0.00 0.00 37.70 5.25
1157 1403 3.470567 GCGTCAACGTCTCCGCTG 61.471 66.667 15.58 0.00 42.66 5.18
1162 1408 3.470567 CTGGCGCGTCAACGTCTC 61.471 66.667 16.92 0.00 42.22 3.36
1177 1423 4.087892 CTGCTGGTCCCGGTCCTG 62.088 72.222 12.98 12.99 0.00 3.86
1237 1483 4.856801 CCATTCCGGGTCCTGCGG 62.857 72.222 0.00 0.32 0.00 5.69
1246 1492 2.045340 GGTCACCACCCATTCCGG 60.045 66.667 0.00 0.00 36.54 5.14
1247 1493 0.748005 GATGGTCACCACCCATTCCG 60.748 60.000 0.00 0.00 42.76 4.30
1248 1494 0.395724 GGATGGTCACCACCCATTCC 60.396 60.000 0.39 0.00 42.76 3.01
1249 1495 0.748005 CGGATGGTCACCACCCATTC 60.748 60.000 8.43 0.00 36.88 2.67
1250 1496 1.302949 CGGATGGTCACCACCCATT 59.697 57.895 8.43 0.00 36.88 3.16
1251 1497 2.998097 CGGATGGTCACCACCCAT 59.002 61.111 8.43 0.00 36.88 4.00
1252 1498 4.028490 GCGGATGGTCACCACCCA 62.028 66.667 8.43 0.00 36.88 4.51
1257 1503 4.090588 TTCCCGCGGATGGTCACC 62.091 66.667 30.73 0.00 0.00 4.02
1258 1504 2.511600 CTTCCCGCGGATGGTCAC 60.512 66.667 30.73 0.00 0.00 3.67
1259 1505 4.467084 GCTTCCCGCGGATGGTCA 62.467 66.667 30.73 1.92 0.00 4.02
1260 1506 4.162690 AGCTTCCCGCGGATGGTC 62.163 66.667 30.73 11.51 45.59 4.02
1261 1507 4.473520 CAGCTTCCCGCGGATGGT 62.474 66.667 30.73 18.37 45.59 3.55
1319 1565 4.849329 CGCGGTACACGGAGAGCC 62.849 72.222 0.00 0.00 44.51 4.70
1320 1566 4.112341 ACGCGGTACACGGAGAGC 62.112 66.667 12.47 0.00 44.51 4.09
1321 1567 2.202440 CACGCGGTACACGGAGAG 60.202 66.667 12.47 0.00 44.51 3.20
1322 1568 4.409218 GCACGCGGTACACGGAGA 62.409 66.667 12.47 0.00 44.51 3.71
1327 1573 3.419759 CTTGGGCACGCGGTACAC 61.420 66.667 12.47 0.00 0.00 2.90
1328 1574 3.869473 GACTTGGGCACGCGGTACA 62.869 63.158 12.47 0.21 0.00 2.90
1329 1575 3.116531 GACTTGGGCACGCGGTAC 61.117 66.667 12.47 0.00 0.00 3.34
1330 1576 4.728102 CGACTTGGGCACGCGGTA 62.728 66.667 12.47 0.00 0.00 4.02
1359 1605 4.907034 ATGTAGGCGCGCTCGTCG 62.907 66.667 32.29 0.00 46.46 5.12
1360 1606 3.323136 CATGTAGGCGCGCTCGTC 61.323 66.667 32.29 14.56 41.36 4.20
1371 1617 2.108514 CACCACCTGCGGCATGTAG 61.109 63.158 10.57 6.44 0.00 2.74
1372 1618 2.046411 CACCACCTGCGGCATGTA 60.046 61.111 10.57 0.00 0.00 2.29
1373 1619 4.269523 ACACCACCTGCGGCATGT 62.270 61.111 1.75 3.61 0.00 3.21
1374 1620 3.434319 GACACCACCTGCGGCATG 61.434 66.667 1.75 2.81 0.00 4.06
1375 1621 4.722700 GGACACCACCTGCGGCAT 62.723 66.667 1.75 0.00 0.00 4.40
1377 1623 4.722700 ATGGACACCACCTGCGGC 62.723 66.667 0.00 0.00 35.80 6.53
1378 1624 2.436646 GATGGACACCACCTGCGG 60.437 66.667 0.00 0.00 35.80 5.69
1379 1625 2.815211 CGATGGACACCACCTGCG 60.815 66.667 0.00 0.00 35.80 5.18
1380 1626 2.436646 CCGATGGACACCACCTGC 60.437 66.667 0.00 0.00 35.80 4.85
1381 1627 2.436646 GCCGATGGACACCACCTG 60.437 66.667 0.00 0.00 35.80 4.00
1382 1628 3.717294 GGCCGATGGACACCACCT 61.717 66.667 0.00 0.00 35.80 4.00
1383 1629 4.796495 GGGCCGATGGACACCACC 62.796 72.222 0.00 0.00 35.80 4.61
1428 1674 2.125552 TTGTGGCGCTCCATCTCG 60.126 61.111 7.64 0.00 45.62 4.04
1429 1675 1.078848 ACTTGTGGCGCTCCATCTC 60.079 57.895 7.64 0.00 45.62 2.75
1430 1676 1.376424 CACTTGTGGCGCTCCATCT 60.376 57.895 7.64 0.00 45.62 2.90
1431 1677 2.401766 CCACTTGTGGCGCTCCATC 61.402 63.158 7.64 0.00 45.62 3.51
1432 1678 2.360350 CCACTTGTGGCGCTCCAT 60.360 61.111 7.64 0.00 45.62 3.41
1459 1705 2.052237 GCGTTTGAGCACGTGGTG 60.052 61.111 27.15 11.42 42.43 4.17
1460 1706 2.512745 TGCGTTTGAGCACGTGGT 60.513 55.556 22.06 22.06 42.92 4.16
1468 1714 4.025401 GTGGCCCGTGCGTTTGAG 62.025 66.667 0.00 0.00 38.85 3.02
1489 1735 2.488820 GTCGAGGTAGGCGGTGAC 59.511 66.667 0.00 0.00 0.00 3.67
1490 1736 3.129502 CGTCGAGGTAGGCGGTGA 61.130 66.667 0.00 0.00 35.33 4.02
1491 1737 4.849329 GCGTCGAGGTAGGCGGTG 62.849 72.222 7.01 0.00 39.95 4.94
1510 1756 4.559063 CTCCTCCATGGGCCGCAG 62.559 72.222 13.02 0.53 36.20 5.18
1517 1763 4.864334 GCACCCGCTCCTCCATGG 62.864 72.222 4.97 4.97 34.30 3.66
1528 1774 4.814294 GTAGCAGGACCGCACCCG 62.814 72.222 10.28 0.00 0.00 5.28
1529 1775 4.814294 CGTAGCAGGACCGCACCC 62.814 72.222 10.28 0.00 0.00 4.61
1530 1776 3.755628 TCGTAGCAGGACCGCACC 61.756 66.667 10.28 0.00 0.00 5.01
1531 1777 2.506438 GTCGTAGCAGGACCGCAC 60.506 66.667 10.28 6.15 0.00 5.34
1532 1778 4.111016 CGTCGTAGCAGGACCGCA 62.111 66.667 10.28 0.00 29.78 5.69
1533 1779 4.849329 CCGTCGTAGCAGGACCGC 62.849 72.222 0.68 0.68 29.78 5.68
1534 1780 4.849329 GCCGTCGTAGCAGGACCG 62.849 72.222 0.00 0.00 29.78 4.79
1535 1781 4.509737 GGCCGTCGTAGCAGGACC 62.510 72.222 0.00 0.00 29.78 4.46
1536 1782 4.849329 CGGCCGTCGTAGCAGGAC 62.849 72.222 19.50 0.00 0.00 3.85
1560 2226 4.108299 TCGTTGGCCGGCATCCAT 62.108 61.111 30.85 0.00 37.11 3.41
1725 2391 0.390492 CCAGCAGGATCATGTCGCTA 59.610 55.000 9.42 0.00 36.89 4.26
1743 2409 0.824759 ACAGCGGTATCTGGTTCTCC 59.175 55.000 0.00 0.00 38.36 3.71
1839 2505 1.424493 GCATCAGCGGGTCGAAGAAG 61.424 60.000 0.00 0.00 39.69 2.85
1884 2550 0.759346 ACTCAAGCTTGAACCGGTCT 59.241 50.000 28.16 0.00 36.64 3.85
2214 2880 2.434185 TTGCTGCCGTCGTGGATC 60.434 61.111 0.00 0.00 42.00 3.36
2228 2894 2.260869 TTCAGGAACAGCGCCTTGC 61.261 57.895 2.29 0.39 46.98 4.01
2586 3252 2.604686 AGCAGGAGGAAGACGCCA 60.605 61.111 0.00 0.00 42.23 5.69
2752 3420 6.203338 ACCAATCAATCAATCAAAACTGCAAC 59.797 34.615 0.00 0.00 0.00 4.17
2838 3511 2.376109 TCTCCCACCAGAATCGAGTAC 58.624 52.381 0.00 0.00 0.00 2.73
2861 3534 7.982371 TTTGCTTATTTTTGCCACAAAAATG 57.018 28.000 28.37 19.01 39.40 2.32
2876 3552 9.748708 ACGATTAATACAATGCATTTGCTTATT 57.251 25.926 9.83 12.05 42.66 1.40
2877 3553 9.398170 GACGATTAATACAATGCATTTGCTTAT 57.602 29.630 9.83 1.81 42.66 1.73
2899 3575 2.248248 AGATGTCCCAAGAACAGACGA 58.752 47.619 0.00 0.00 33.09 4.20
2952 3733 9.436957 CTTAGAATCAAGCCTAAAACAAGACTA 57.563 33.333 0.00 0.00 0.00 2.59
2963 3744 5.944007 GTGGAAAACCTTAGAATCAAGCCTA 59.056 40.000 0.00 0.00 0.00 3.93
2968 3749 5.008217 CACGTGTGGAAAACCTTAGAATCAA 59.992 40.000 7.58 0.00 0.00 2.57
3017 3801 0.314302 AACTGAGACGTGGAAGGACG 59.686 55.000 0.00 0.00 45.09 4.79
3069 3853 2.544685 GCGTGTTGCTGATCTACATCT 58.455 47.619 0.00 0.00 41.73 2.90
3145 3939 4.436332 TGTAGAGTAGAAGCATCGTACGA 58.564 43.478 21.93 21.93 0.00 3.43
3165 3959 2.509166 TGGATCCTGACGACTACTGT 57.491 50.000 14.23 0.00 0.00 3.55
3166 3960 2.294791 GGATGGATCCTGACGACTACTG 59.705 54.545 14.23 0.00 43.73 2.74
3167 3961 2.588620 GGATGGATCCTGACGACTACT 58.411 52.381 14.23 0.00 43.73 2.57
3238 4032 1.731433 CTGGGCGCTTCCATTCCATG 61.731 60.000 7.64 0.00 36.05 3.66
3418 4216 6.346096 GGCCATTGTCAAGTTGATAGTAGTA 58.654 40.000 9.18 0.00 0.00 1.82
3419 4217 5.186198 GGCCATTGTCAAGTTGATAGTAGT 58.814 41.667 9.18 0.00 0.00 2.73
3420 4218 4.576463 GGGCCATTGTCAAGTTGATAGTAG 59.424 45.833 9.18 0.00 0.00 2.57
3422 4220 3.356290 GGGCCATTGTCAAGTTGATAGT 58.644 45.455 9.18 0.00 0.00 2.12
3423 4221 2.689983 GGGGCCATTGTCAAGTTGATAG 59.310 50.000 9.18 0.00 0.00 2.08
3434 4232 1.829523 GCACATGTTGGGGCCATTGT 61.830 55.000 4.39 0.00 0.00 2.71
3437 4235 1.126329 TTTGCACATGTTGGGGCCAT 61.126 50.000 4.39 0.00 0.00 4.40
3441 4239 2.547299 AACATTTGCACATGTTGGGG 57.453 45.000 26.17 0.00 44.19 4.96
3466 4264 1.422531 TGCCCTGACATTTGGCTTTT 58.577 45.000 10.91 0.00 45.56 2.27
3467 4265 1.422531 TTGCCCTGACATTTGGCTTT 58.577 45.000 10.91 0.00 45.56 3.51
3468 4266 1.551883 GATTGCCCTGACATTTGGCTT 59.448 47.619 10.91 1.25 45.56 4.35
3469 4267 1.188863 GATTGCCCTGACATTTGGCT 58.811 50.000 10.91 0.00 45.56 4.75
3470 4268 1.188863 AGATTGCCCTGACATTTGGC 58.811 50.000 4.31 4.31 45.56 4.52
3471 4269 3.512724 AGAAAGATTGCCCTGACATTTGG 59.487 43.478 0.00 0.00 0.00 3.28
3472 4270 4.796038 AGAAAGATTGCCCTGACATTTG 57.204 40.909 0.00 0.00 0.00 2.32
3473 4271 5.813513 AAAGAAAGATTGCCCTGACATTT 57.186 34.783 0.00 0.00 0.00 2.32
3494 4292 9.039870 CAGAAAACAGTATATTGTTGCCAAAAA 57.960 29.630 13.68 0.00 40.24 1.94
3495 4293 7.170658 GCAGAAAACAGTATATTGTTGCCAAAA 59.829 33.333 13.68 0.00 40.24 2.44
3496 4294 6.644592 GCAGAAAACAGTATATTGTTGCCAAA 59.355 34.615 13.68 0.00 40.24 3.28
3497 4295 6.155827 GCAGAAAACAGTATATTGTTGCCAA 58.844 36.000 13.68 0.00 40.24 4.52
3500 4298 7.541783 TGATTGCAGAAAACAGTATATTGTTGC 59.458 33.333 13.68 13.36 40.24 4.17
3504 4302 7.765307 AGGTGATTGCAGAAAACAGTATATTG 58.235 34.615 0.00 0.00 0.00 1.90
3512 4310 5.183713 CCTGATAAGGTGATTGCAGAAAACA 59.816 40.000 0.00 0.00 30.43 2.83
3523 4321 4.725790 GCTTTTTGCCTGATAAGGTGAT 57.274 40.909 0.00 0.00 35.15 3.06
3545 4345 9.748708 TTAAAGAAAAGATTGTCCTGACATTTG 57.251 29.630 0.03 0.00 41.52 2.32
3565 4365 4.842531 TGCCCTGACATCATCTTAAAGA 57.157 40.909 0.00 0.00 0.00 2.52
3566 4366 5.826737 AGATTGCCCTGACATCATCTTAAAG 59.173 40.000 0.00 0.00 0.00 1.85
3570 4370 3.947612 AGATTGCCCTGACATCATCTT 57.052 42.857 0.00 0.00 0.00 2.40
3628 4436 3.746492 AGTACGAATCAGCCTTTGTGTTC 59.254 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.