Multiple sequence alignment - TraesCS2A01G359600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G359600 chr2A 100.000 4422 0 0 1 4422 603551808 603547387 0.000000e+00 8167.0
1 TraesCS2A01G359600 chr2D 93.454 1818 66 21 567 2373 460729635 460727860 0.000000e+00 2649.0
2 TraesCS2A01G359600 chr2D 91.937 1265 77 12 2599 3848 460727641 460726387 0.000000e+00 1748.0
3 TraesCS2A01G359600 chr2D 89.785 372 27 6 4056 4422 460711110 460710745 2.410000e-127 466.0
4 TraesCS2A01G359600 chr2D 84.865 185 19 4 3849 4033 460711346 460711171 1.260000e-40 178.0
5 TraesCS2A01G359600 chr2B 88.235 1309 104 30 2523 3806 541944305 541943022 0.000000e+00 1519.0
6 TraesCS2A01G359600 chr2B 89.539 1042 67 12 610 1644 541946009 541945003 0.000000e+00 1282.0
7 TraesCS2A01G359600 chr2B 93.962 530 32 0 1818 2347 541945019 541944490 0.000000e+00 802.0
8 TraesCS2A01G359600 chr2B 87.967 241 19 7 4184 4422 541908532 541908300 4.360000e-70 276.0
9 TraesCS2A01G359600 chr5D 82.057 418 73 2 1874 2290 221477624 221477208 5.440000e-94 355.0
10 TraesCS2A01G359600 chr5D 76.533 473 65 21 13 460 462348172 462348623 2.680000e-52 217.0
11 TraesCS2A01G359600 chr5D 87.578 161 18 2 1234 1393 221479878 221479719 7.550000e-43 185.0
12 TraesCS2A01G359600 chr5D 87.805 82 9 1 3855 3936 99348533 99348453 1.310000e-15 95.3
13 TraesCS2A01G359600 chr1D 82.126 414 70 4 1874 2285 27546523 27546112 7.040000e-93 351.0
14 TraesCS2A01G359600 chr1D 81.250 416 72 6 1874 2286 27578086 27577674 9.170000e-87 331.0
15 TraesCS2A01G359600 chr1D 86.667 105 13 1 3849 3953 478978017 478977914 1.010000e-21 115.0
16 TraesCS2A01G359600 chr5B 82.697 393 66 2 1898 2289 244008082 244007691 9.100000e-92 348.0
17 TraesCS2A01G359600 chr5B 86.957 161 19 2 1234 1393 244010696 244010537 3.510000e-41 180.0
18 TraesCS2A01G359600 chr5A 81.884 414 73 2 1874 2286 302554863 302555275 9.100000e-92 348.0
19 TraesCS2A01G359600 chr5A 87.578 161 18 2 1234 1393 302552443 302552602 7.550000e-43 185.0
20 TraesCS2A01G359600 chr5A 85.227 88 12 1 3849 3936 103906210 103906296 6.090000e-14 89.8
21 TraesCS2A01G359600 chr1B 81.340 418 74 4 1874 2289 43045185 43044770 1.970000e-88 337.0
22 TraesCS2A01G359600 chr1A 80.706 425 78 4 1867 2289 28363154 28362732 1.190000e-85 327.0
23 TraesCS2A01G359600 chr6B 88.571 105 10 2 3849 3953 29065308 29065206 4.640000e-25 126.0
24 TraesCS2A01G359600 chr4A 81.119 143 19 7 116 253 589782950 589782811 1.680000e-19 108.0
25 TraesCS2A01G359600 chr3D 72.233 497 86 32 1 465 2921474 2920998 6.050000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G359600 chr2A 603547387 603551808 4421 True 8167.0 8167 100.000000 1 4422 1 chr2A.!!$R1 4421
1 TraesCS2A01G359600 chr2D 460726387 460729635 3248 True 2198.5 2649 92.695500 567 3848 2 chr2D.!!$R2 3281
2 TraesCS2A01G359600 chr2D 460710745 460711346 601 True 322.0 466 87.325000 3849 4422 2 chr2D.!!$R1 573
3 TraesCS2A01G359600 chr2B 541943022 541946009 2987 True 1201.0 1519 90.578667 610 3806 3 chr2B.!!$R2 3196
4 TraesCS2A01G359600 chr5D 221477208 221479878 2670 True 270.0 355 84.817500 1234 2290 2 chr5D.!!$R2 1056
5 TraesCS2A01G359600 chr5B 244007691 244010696 3005 True 264.0 348 84.827000 1234 2289 2 chr5B.!!$R1 1055
6 TraesCS2A01G359600 chr5A 302552443 302555275 2832 False 266.5 348 84.731000 1234 2286 2 chr5A.!!$F2 1052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
244 245 0.033504 GACCTCAGCACGAACAAGGA 59.966 55.0 0.00 0.0 0.00 3.36 F
253 254 0.034896 ACGAACAAGGAAGACGGCAT 59.965 50.0 0.00 0.0 0.00 4.40 F
2010 4140 0.036022 GCTGTCCCAGACAAGAGCTT 59.964 55.0 0.00 0.0 42.26 3.74 F
3261 5449 0.106268 TTGAGTTCAAGGCAAGCCCA 60.106 50.0 7.62 0.0 36.58 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 3319 0.875059 GAAGTCCCGTTGCTCAAAGG 59.125 55.000 7.47 7.47 39.25 3.11 R
2110 4240 1.001633 TGACCTTGCGGGACTAGAAAC 59.998 52.381 0.00 0.00 38.76 2.78 R
3395 5583 0.321671 TCTTGAGCCAGAAACGGAGG 59.678 55.000 0.00 0.00 0.00 4.30 R
4241 6494 0.249155 ACGTACGTGGTCACAAGTGG 60.249 55.000 22.14 0.00 39.64 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.190578 GAGGGATTGGTGGAGCGG 59.809 66.667 0.00 0.00 0.00 5.52
18 19 3.406595 GAGGGATTGGTGGAGCGGG 62.407 68.421 0.00 0.00 0.00 6.13
19 20 3.407967 GGGATTGGTGGAGCGGGA 61.408 66.667 0.00 0.00 0.00 5.14
20 21 2.124695 GGATTGGTGGAGCGGGAC 60.125 66.667 0.00 0.00 0.00 4.46
52 53 3.319198 GTGGAACCCAGAGGCGGA 61.319 66.667 0.00 0.00 36.11 5.54
53 54 3.003173 TGGAACCCAGAGGCGGAG 61.003 66.667 0.00 0.00 36.11 4.63
54 55 3.787001 GGAACCCAGAGGCGGAGG 61.787 72.222 0.00 0.00 36.11 4.30
74 75 3.322514 CCAACATTGGTCGTGGACT 57.677 52.632 2.22 0.00 43.43 3.85
75 76 2.465860 CCAACATTGGTCGTGGACTA 57.534 50.000 2.22 0.00 43.43 2.59
76 77 2.985896 CCAACATTGGTCGTGGACTAT 58.014 47.619 2.22 0.00 43.43 2.12
77 78 2.677836 CCAACATTGGTCGTGGACTATG 59.322 50.000 2.22 8.69 43.43 2.23
78 79 3.595173 CAACATTGGTCGTGGACTATGA 58.405 45.455 13.99 0.00 32.92 2.15
79 80 3.247006 ACATTGGTCGTGGACTATGAC 57.753 47.619 2.65 2.65 43.27 3.06
80 81 2.832129 ACATTGGTCGTGGACTATGACT 59.168 45.455 10.59 0.00 43.47 3.41
81 82 3.119101 ACATTGGTCGTGGACTATGACTC 60.119 47.826 10.59 2.78 43.47 3.36
82 83 2.509166 TGGTCGTGGACTATGACTCT 57.491 50.000 10.59 0.00 43.47 3.24
83 84 2.092323 TGGTCGTGGACTATGACTCTG 58.908 52.381 10.59 0.00 43.47 3.35
84 85 1.202313 GGTCGTGGACTATGACTCTGC 60.202 57.143 10.59 0.00 43.47 4.26
85 86 1.103803 TCGTGGACTATGACTCTGCC 58.896 55.000 0.00 0.00 0.00 4.85
86 87 0.817654 CGTGGACTATGACTCTGCCA 59.182 55.000 0.00 0.00 0.00 4.92
87 88 1.410517 CGTGGACTATGACTCTGCCAT 59.589 52.381 0.00 0.00 0.00 4.40
88 89 2.800985 CGTGGACTATGACTCTGCCATG 60.801 54.545 0.00 0.00 0.00 3.66
89 90 1.139654 TGGACTATGACTCTGCCATGC 59.860 52.381 0.00 0.00 0.00 4.06
90 91 1.139654 GGACTATGACTCTGCCATGCA 59.860 52.381 0.00 0.00 36.92 3.96
91 92 2.208431 GACTATGACTCTGCCATGCAC 58.792 52.381 0.00 0.00 33.79 4.57
92 93 1.134280 ACTATGACTCTGCCATGCACC 60.134 52.381 0.00 0.00 33.79 5.01
93 94 0.181114 TATGACTCTGCCATGCACCC 59.819 55.000 0.00 0.00 33.79 4.61
94 95 2.439156 GACTCTGCCATGCACCCC 60.439 66.667 0.00 0.00 33.79 4.95
95 96 4.415150 ACTCTGCCATGCACCCCG 62.415 66.667 0.00 0.00 33.79 5.73
106 107 4.394712 CACCCCGGAGCTGGTGTC 62.395 72.222 16.95 0.00 45.61 3.67
107 108 4.954118 ACCCCGGAGCTGGTGTCA 62.954 66.667 0.73 0.00 32.36 3.58
108 109 4.087892 CCCCGGAGCTGGTGTCAG 62.088 72.222 0.73 0.00 43.64 3.51
175 176 4.335647 CTCGCCACCCCTTGCAGT 62.336 66.667 0.00 0.00 0.00 4.40
176 177 4.641645 TCGCCACCCCTTGCAGTG 62.642 66.667 0.00 0.00 0.00 3.66
179 180 2.987547 CCACCCCTTGCAGTGCAG 60.988 66.667 18.81 12.20 40.61 4.41
180 181 3.677648 CACCCCTTGCAGTGCAGC 61.678 66.667 18.81 0.00 40.61 5.25
181 182 4.982701 ACCCCTTGCAGTGCAGCC 62.983 66.667 18.81 0.00 40.61 4.85
203 204 3.204827 GCGCCACTAGCCCATGTG 61.205 66.667 0.00 0.00 38.78 3.21
204 205 2.268920 CGCCACTAGCCCATGTGT 59.731 61.111 0.00 0.00 38.78 3.72
205 206 2.108514 CGCCACTAGCCCATGTGTG 61.109 63.158 0.00 0.00 38.78 3.82
206 207 4.643795 CCACTAGCCCATGTGTGG 57.356 61.111 0.00 0.00 45.61 4.17
223 224 4.496336 GCAGCCGCCTCCCTTCAT 62.496 66.667 0.00 0.00 0.00 2.57
224 225 2.203126 CAGCCGCCTCCCTTCATC 60.203 66.667 0.00 0.00 0.00 2.92
225 226 3.854669 AGCCGCCTCCCTTCATCG 61.855 66.667 0.00 0.00 0.00 3.84
226 227 3.849951 GCCGCCTCCCTTCATCGA 61.850 66.667 0.00 0.00 0.00 3.59
227 228 2.107141 CCGCCTCCCTTCATCGAC 59.893 66.667 0.00 0.00 0.00 4.20
228 229 2.107141 CGCCTCCCTTCATCGACC 59.893 66.667 0.00 0.00 0.00 4.79
229 230 2.427245 CGCCTCCCTTCATCGACCT 61.427 63.158 0.00 0.00 0.00 3.85
230 231 1.443828 GCCTCCCTTCATCGACCTC 59.556 63.158 0.00 0.00 0.00 3.85
231 232 1.330655 GCCTCCCTTCATCGACCTCA 61.331 60.000 0.00 0.00 0.00 3.86
232 233 0.749649 CCTCCCTTCATCGACCTCAG 59.250 60.000 0.00 0.00 0.00 3.35
233 234 0.103937 CTCCCTTCATCGACCTCAGC 59.896 60.000 0.00 0.00 0.00 4.26
234 235 0.614697 TCCCTTCATCGACCTCAGCA 60.615 55.000 0.00 0.00 0.00 4.41
235 236 0.460987 CCCTTCATCGACCTCAGCAC 60.461 60.000 0.00 0.00 0.00 4.40
236 237 0.803768 CCTTCATCGACCTCAGCACG 60.804 60.000 0.00 0.00 0.00 5.34
237 238 0.171231 CTTCATCGACCTCAGCACGA 59.829 55.000 0.00 0.00 40.18 4.35
238 239 0.601057 TTCATCGACCTCAGCACGAA 59.399 50.000 0.00 0.00 39.38 3.85
239 240 0.109272 TCATCGACCTCAGCACGAAC 60.109 55.000 0.00 0.00 39.38 3.95
240 241 0.388520 CATCGACCTCAGCACGAACA 60.389 55.000 0.00 0.00 39.38 3.18
241 242 0.317160 ATCGACCTCAGCACGAACAA 59.683 50.000 0.00 0.00 39.38 2.83
242 243 0.318699 TCGACCTCAGCACGAACAAG 60.319 55.000 0.00 0.00 33.20 3.16
243 244 1.284982 CGACCTCAGCACGAACAAGG 61.285 60.000 0.00 0.00 0.00 3.61
244 245 0.033504 GACCTCAGCACGAACAAGGA 59.966 55.000 0.00 0.00 0.00 3.36
245 246 0.468226 ACCTCAGCACGAACAAGGAA 59.532 50.000 0.00 0.00 0.00 3.36
246 247 1.151668 CCTCAGCACGAACAAGGAAG 58.848 55.000 0.00 0.00 0.00 3.46
247 248 1.270305 CCTCAGCACGAACAAGGAAGA 60.270 52.381 0.00 0.00 0.00 2.87
248 249 1.795286 CTCAGCACGAACAAGGAAGAC 59.205 52.381 0.00 0.00 0.00 3.01
249 250 0.508641 CAGCACGAACAAGGAAGACG 59.491 55.000 0.00 0.00 0.00 4.18
250 251 0.600255 AGCACGAACAAGGAAGACGG 60.600 55.000 0.00 0.00 0.00 4.79
251 252 1.860078 CACGAACAAGGAAGACGGC 59.140 57.895 0.00 0.00 0.00 5.68
252 253 0.878523 CACGAACAAGGAAGACGGCA 60.879 55.000 0.00 0.00 0.00 5.69
253 254 0.034896 ACGAACAAGGAAGACGGCAT 59.965 50.000 0.00 0.00 0.00 4.40
254 255 0.443869 CGAACAAGGAAGACGGCATG 59.556 55.000 0.00 0.00 0.00 4.06
255 256 0.169009 GAACAAGGAAGACGGCATGC 59.831 55.000 9.90 9.90 0.00 4.06
256 257 0.537143 AACAAGGAAGACGGCATGCA 60.537 50.000 21.36 0.00 0.00 3.96
257 258 0.957395 ACAAGGAAGACGGCATGCAG 60.957 55.000 21.36 18.97 0.00 4.41
258 259 0.957395 CAAGGAAGACGGCATGCAGT 60.957 55.000 23.79 23.79 0.00 4.40
259 260 0.957395 AAGGAAGACGGCATGCAGTG 60.957 55.000 28.32 14.85 0.00 3.66
286 287 2.822215 GGAGACGGCCAATCTAGGA 58.178 57.895 2.24 0.00 0.00 2.94
287 288 1.343069 GGAGACGGCCAATCTAGGAT 58.657 55.000 2.24 0.00 0.00 3.24
288 289 1.694696 GGAGACGGCCAATCTAGGATT 59.305 52.381 2.24 0.00 0.00 3.01
289 290 2.104963 GGAGACGGCCAATCTAGGATTT 59.895 50.000 2.24 0.00 0.00 2.17
290 291 3.394719 GAGACGGCCAATCTAGGATTTC 58.605 50.000 2.24 0.00 0.00 2.17
291 292 2.771943 AGACGGCCAATCTAGGATTTCA 59.228 45.455 2.24 0.00 0.00 2.69
292 293 3.392616 AGACGGCCAATCTAGGATTTCAT 59.607 43.478 2.24 0.00 0.00 2.57
293 294 4.137543 GACGGCCAATCTAGGATTTCATT 58.862 43.478 2.24 0.00 0.00 2.57
294 295 4.536765 ACGGCCAATCTAGGATTTCATTT 58.463 39.130 2.24 0.00 0.00 2.32
295 296 4.339247 ACGGCCAATCTAGGATTTCATTTG 59.661 41.667 2.24 0.00 0.00 2.32
296 297 4.261741 CGGCCAATCTAGGATTTCATTTGG 60.262 45.833 2.24 0.00 36.16 3.28
297 298 4.651045 GGCCAATCTAGGATTTCATTTGGT 59.349 41.667 0.00 0.00 35.64 3.67
298 299 5.129320 GGCCAATCTAGGATTTCATTTGGTT 59.871 40.000 0.00 0.00 35.64 3.67
299 300 6.352137 GGCCAATCTAGGATTTCATTTGGTTT 60.352 38.462 0.00 0.00 35.64 3.27
300 301 7.147742 GGCCAATCTAGGATTTCATTTGGTTTA 60.148 37.037 0.00 0.00 35.64 2.01
301 302 8.257306 GCCAATCTAGGATTTCATTTGGTTTAA 58.743 33.333 0.00 0.00 35.64 1.52
302 303 9.807649 CCAATCTAGGATTTCATTTGGTTTAAG 57.192 33.333 0.00 0.00 0.00 1.85
303 304 9.807649 CAATCTAGGATTTCATTTGGTTTAAGG 57.192 33.333 0.00 0.00 0.00 2.69
304 305 9.547279 AATCTAGGATTTCATTTGGTTTAAGGT 57.453 29.630 0.00 0.00 0.00 3.50
305 306 8.575649 TCTAGGATTTCATTTGGTTTAAGGTC 57.424 34.615 0.00 0.00 0.00 3.85
306 307 8.167392 TCTAGGATTTCATTTGGTTTAAGGTCA 58.833 33.333 0.00 0.00 0.00 4.02
307 308 7.797121 AGGATTTCATTTGGTTTAAGGTCAT 57.203 32.000 0.00 0.00 0.00 3.06
308 309 8.206126 AGGATTTCATTTGGTTTAAGGTCATT 57.794 30.769 0.00 0.00 0.00 2.57
309 310 8.659527 AGGATTTCATTTGGTTTAAGGTCATTT 58.340 29.630 0.00 0.00 0.00 2.32
310 311 9.283768 GGATTTCATTTGGTTTAAGGTCATTTT 57.716 29.630 0.00 0.00 0.00 1.82
344 345 9.562583 TTTATTTTTAATGCACGTGGATAGTTC 57.437 29.630 23.47 1.24 0.00 3.01
345 346 4.850859 TTTAATGCACGTGGATAGTTCG 57.149 40.909 23.47 0.00 0.00 3.95
346 347 1.651987 AATGCACGTGGATAGTTCGG 58.348 50.000 23.47 0.00 0.00 4.30
347 348 0.810031 ATGCACGTGGATAGTTCGGC 60.810 55.000 21.92 0.00 0.00 5.54
348 349 1.153628 GCACGTGGATAGTTCGGCT 60.154 57.895 18.88 0.00 0.00 5.52
349 350 1.421410 GCACGTGGATAGTTCGGCTG 61.421 60.000 18.88 0.00 0.00 4.85
350 351 0.108804 CACGTGGATAGTTCGGCTGT 60.109 55.000 7.95 0.00 0.00 4.40
351 352 0.108804 ACGTGGATAGTTCGGCTGTG 60.109 55.000 0.00 0.00 0.00 3.66
352 353 0.172578 CGTGGATAGTTCGGCTGTGA 59.827 55.000 0.00 0.00 0.00 3.58
353 354 1.403647 CGTGGATAGTTCGGCTGTGAA 60.404 52.381 0.00 0.00 0.00 3.18
354 355 2.000447 GTGGATAGTTCGGCTGTGAAC 59.000 52.381 8.37 8.37 46.78 3.18
363 364 5.806089 GTTCGGCTGTGAACTTTTTAATG 57.194 39.130 8.95 0.00 43.82 1.90
364 365 5.278604 GTTCGGCTGTGAACTTTTTAATGT 58.721 37.500 8.95 0.00 43.82 2.71
365 366 6.432107 GTTCGGCTGTGAACTTTTTAATGTA 58.568 36.000 8.95 0.00 43.82 2.29
366 367 6.621316 TCGGCTGTGAACTTTTTAATGTAA 57.379 33.333 0.00 0.00 0.00 2.41
367 368 7.209471 TCGGCTGTGAACTTTTTAATGTAAT 57.791 32.000 0.00 0.00 0.00 1.89
368 369 8.325421 TCGGCTGTGAACTTTTTAATGTAATA 57.675 30.769 0.00 0.00 0.00 0.98
369 370 8.952278 TCGGCTGTGAACTTTTTAATGTAATAT 58.048 29.630 0.00 0.00 0.00 1.28
370 371 9.009327 CGGCTGTGAACTTTTTAATGTAATATG 57.991 33.333 0.00 0.00 0.00 1.78
371 372 9.855021 GGCTGTGAACTTTTTAATGTAATATGT 57.145 29.630 0.00 0.00 0.00 2.29
432 433 9.724839 TTATATTTGCATTTAAGTTAAGCGGAC 57.275 29.630 0.00 0.00 0.00 4.79
433 434 3.733024 TGCATTTAAGTTAAGCGGACG 57.267 42.857 0.00 0.00 0.00 4.79
434 435 3.068560 TGCATTTAAGTTAAGCGGACGT 58.931 40.909 0.00 0.00 0.00 4.34
435 436 3.499157 TGCATTTAAGTTAAGCGGACGTT 59.501 39.130 0.00 0.00 0.00 3.99
436 437 4.023878 TGCATTTAAGTTAAGCGGACGTTT 60.024 37.500 0.00 0.00 0.00 3.60
437 438 4.913345 GCATTTAAGTTAAGCGGACGTTTT 59.087 37.500 0.00 0.00 0.00 2.43
438 439 5.400188 GCATTTAAGTTAAGCGGACGTTTTT 59.600 36.000 0.00 0.00 0.00 1.94
439 440 6.612705 GCATTTAAGTTAAGCGGACGTTTTTG 60.613 38.462 0.00 0.00 0.00 2.44
440 441 5.482686 TTAAGTTAAGCGGACGTTTTTGT 57.517 34.783 0.00 0.00 0.00 2.83
441 442 3.597377 AGTTAAGCGGACGTTTTTGTC 57.403 42.857 0.00 0.00 38.17 3.18
442 443 2.937799 AGTTAAGCGGACGTTTTTGTCA 59.062 40.909 0.00 0.00 40.72 3.58
443 444 3.374678 AGTTAAGCGGACGTTTTTGTCAA 59.625 39.130 0.00 0.00 40.72 3.18
444 445 2.182904 AAGCGGACGTTTTTGTCAAC 57.817 45.000 0.00 0.00 40.72 3.18
445 446 1.375551 AGCGGACGTTTTTGTCAACT 58.624 45.000 0.00 0.00 40.72 3.16
446 447 1.063469 AGCGGACGTTTTTGTCAACTG 59.937 47.619 0.00 0.00 40.72 3.16
447 448 1.462791 CGGACGTTTTTGTCAACTGC 58.537 50.000 0.00 0.00 40.72 4.40
448 449 1.462791 GGACGTTTTTGTCAACTGCG 58.537 50.000 0.00 0.00 40.72 5.18
449 450 1.462791 GACGTTTTTGTCAACTGCGG 58.537 50.000 0.00 0.00 38.75 5.69
450 451 0.524604 ACGTTTTTGTCAACTGCGGC 60.525 50.000 0.00 0.00 0.00 6.53
451 452 1.528248 CGTTTTTGTCAACTGCGGCG 61.528 55.000 0.51 0.51 0.00 6.46
452 453 1.064946 TTTTTGTCAACTGCGGCGG 59.935 52.632 9.78 7.39 0.00 6.13
453 454 2.343163 TTTTTGTCAACTGCGGCGGG 62.343 55.000 14.26 2.36 0.00 6.13
468 469 4.702274 GGGCCATTGGGTGCACCT 62.702 66.667 33.91 13.42 41.11 4.00
469 470 3.384532 GGCCATTGGGTGCACCTG 61.385 66.667 33.91 23.99 41.11 4.00
470 471 2.601367 GCCATTGGGTGCACCTGT 60.601 61.111 33.91 17.85 41.11 4.00
471 472 1.304052 GCCATTGGGTGCACCTGTA 60.304 57.895 33.91 19.83 41.11 2.74
472 473 1.315257 GCCATTGGGTGCACCTGTAG 61.315 60.000 33.91 20.93 41.11 2.74
473 474 0.327924 CCATTGGGTGCACCTGTAGA 59.672 55.000 33.91 16.19 41.11 2.59
474 475 1.271871 CCATTGGGTGCACCTGTAGAA 60.272 52.381 33.91 18.76 41.11 2.10
475 476 2.086869 CATTGGGTGCACCTGTAGAAG 58.913 52.381 33.91 14.48 41.11 2.85
488 489 3.064931 CTGTAGAAGGACGGTCAAAACC 58.935 50.000 10.76 0.00 42.66 3.27
489 490 2.701951 TGTAGAAGGACGGTCAAAACCT 59.298 45.455 10.76 0.00 44.04 3.50
490 491 3.896888 TGTAGAAGGACGGTCAAAACCTA 59.103 43.478 10.76 1.43 44.04 3.08
491 492 4.344679 TGTAGAAGGACGGTCAAAACCTAA 59.655 41.667 10.76 0.00 44.04 2.69
492 493 3.736720 AGAAGGACGGTCAAAACCTAAC 58.263 45.455 10.76 0.00 44.04 2.34
493 494 3.135167 AGAAGGACGGTCAAAACCTAACA 59.865 43.478 10.76 0.00 44.04 2.41
494 495 2.842457 AGGACGGTCAAAACCTAACAC 58.158 47.619 10.76 0.00 44.04 3.32
495 496 1.528161 GGACGGTCAAAACCTAACACG 59.472 52.381 10.76 0.00 44.04 4.49
496 497 1.528161 GACGGTCAAAACCTAACACGG 59.472 52.381 2.62 0.00 44.04 4.94
497 498 1.134431 ACGGTCAAAACCTAACACGGT 60.134 47.619 0.00 0.00 44.04 4.83
498 499 1.528161 CGGTCAAAACCTAACACGGTC 59.472 52.381 0.00 0.00 44.04 4.79
499 500 1.528161 GGTCAAAACCTAACACGGTCG 59.472 52.381 0.00 0.00 42.80 4.79
500 501 2.204237 GTCAAAACCTAACACGGTCGT 58.796 47.619 0.00 0.00 35.89 4.34
501 502 2.219445 GTCAAAACCTAACACGGTCGTC 59.781 50.000 0.00 0.00 35.89 4.20
502 503 1.528161 CAAAACCTAACACGGTCGTCC 59.472 52.381 0.00 0.00 35.89 4.79
503 504 0.752054 AAACCTAACACGGTCGTCCA 59.248 50.000 0.00 0.00 35.89 4.02
504 505 0.971386 AACCTAACACGGTCGTCCAT 59.029 50.000 0.00 0.00 35.89 3.41
505 506 0.971386 ACCTAACACGGTCGTCCATT 59.029 50.000 0.00 0.00 29.14 3.16
506 507 1.345415 ACCTAACACGGTCGTCCATTT 59.655 47.619 0.00 0.00 29.14 2.32
507 508 2.224354 ACCTAACACGGTCGTCCATTTT 60.224 45.455 0.00 0.00 29.14 1.82
508 509 3.006752 ACCTAACACGGTCGTCCATTTTA 59.993 43.478 0.00 0.00 29.14 1.52
509 510 3.368843 CCTAACACGGTCGTCCATTTTAC 59.631 47.826 0.00 0.00 0.00 2.01
510 511 1.799544 ACACGGTCGTCCATTTTACC 58.200 50.000 0.00 0.00 0.00 2.85
516 517 3.422122 CGTCCATTTTACCGACGGA 57.578 52.632 23.38 0.74 44.26 4.69
517 518 1.712401 CGTCCATTTTACCGACGGAA 58.288 50.000 23.38 4.69 44.26 4.30
518 519 2.067766 CGTCCATTTTACCGACGGAAA 58.932 47.619 23.38 12.21 44.26 3.13
519 520 2.093152 CGTCCATTTTACCGACGGAAAG 59.907 50.000 23.38 1.16 44.26 2.62
520 521 3.069289 GTCCATTTTACCGACGGAAAGT 58.931 45.455 23.38 10.50 0.00 2.66
521 522 3.068560 TCCATTTTACCGACGGAAAGTG 58.931 45.455 23.38 20.13 0.00 3.16
522 523 2.160813 CCATTTTACCGACGGAAAGTGG 59.839 50.000 23.38 24.16 36.48 4.00
523 524 2.906691 TTTTACCGACGGAAAGTGGA 57.093 45.000 23.38 0.00 0.00 4.02
524 525 2.153366 TTTACCGACGGAAAGTGGAC 57.847 50.000 23.38 0.00 0.00 4.02
525 526 1.039068 TTACCGACGGAAAGTGGACA 58.961 50.000 23.38 0.00 0.00 4.02
526 527 1.039068 TACCGACGGAAAGTGGACAA 58.961 50.000 23.38 0.00 0.00 3.18
527 528 0.178533 ACCGACGGAAAGTGGACAAA 59.821 50.000 23.38 0.00 0.00 2.83
528 529 1.301423 CCGACGGAAAGTGGACAAAA 58.699 50.000 8.64 0.00 0.00 2.44
529 530 1.003223 CCGACGGAAAGTGGACAAAAC 60.003 52.381 8.64 0.00 0.00 2.43
530 531 1.332552 CGACGGAAAGTGGACAAAACG 60.333 52.381 0.00 0.00 0.00 3.60
531 532 1.935199 GACGGAAAGTGGACAAAACGA 59.065 47.619 0.00 0.00 0.00 3.85
532 533 1.667212 ACGGAAAGTGGACAAAACGAC 59.333 47.619 0.00 0.00 0.00 4.34
533 534 1.937899 CGGAAAGTGGACAAAACGACT 59.062 47.619 0.00 0.00 0.00 4.18
534 535 2.286184 CGGAAAGTGGACAAAACGACTG 60.286 50.000 0.00 0.00 0.00 3.51
535 536 2.681344 GGAAAGTGGACAAAACGACTGT 59.319 45.455 0.00 0.00 0.00 3.55
536 537 3.242641 GGAAAGTGGACAAAACGACTGTC 60.243 47.826 0.00 0.00 42.08 3.51
540 541 2.231820 GACAAAACGACTGTCCCGG 58.768 57.895 1.55 0.00 37.77 5.73
541 542 0.531311 GACAAAACGACTGTCCCGGT 60.531 55.000 0.00 0.00 37.77 5.28
542 543 0.531311 ACAAAACGACTGTCCCGGTC 60.531 55.000 0.00 0.00 36.50 4.79
543 544 0.249741 CAAAACGACTGTCCCGGTCT 60.250 55.000 0.00 0.00 37.59 3.85
544 545 1.000060 CAAAACGACTGTCCCGGTCTA 60.000 52.381 0.00 0.00 37.59 2.59
545 546 0.886563 AAACGACTGTCCCGGTCTAG 59.113 55.000 0.00 0.00 37.59 2.43
546 547 1.593296 AACGACTGTCCCGGTCTAGC 61.593 60.000 0.00 0.00 37.59 3.42
547 548 2.799371 GACTGTCCCGGTCTAGCG 59.201 66.667 0.00 0.00 36.86 4.26
548 549 2.035312 ACTGTCCCGGTCTAGCGT 59.965 61.111 0.00 0.00 0.00 5.07
549 550 1.593296 GACTGTCCCGGTCTAGCGTT 61.593 60.000 0.00 0.00 36.86 4.84
550 551 1.153823 CTGTCCCGGTCTAGCGTTG 60.154 63.158 0.00 0.00 0.00 4.10
551 552 2.183555 GTCCCGGTCTAGCGTTGG 59.816 66.667 0.00 0.00 0.00 3.77
552 553 2.036098 TCCCGGTCTAGCGTTGGA 59.964 61.111 0.00 0.00 0.00 3.53
553 554 2.050350 TCCCGGTCTAGCGTTGGAG 61.050 63.158 0.00 0.00 0.00 3.86
554 555 2.348888 CCCGGTCTAGCGTTGGAGT 61.349 63.158 0.00 0.00 0.00 3.85
555 556 1.590147 CCGGTCTAGCGTTGGAGTT 59.410 57.895 0.00 0.00 0.00 3.01
556 557 0.736325 CCGGTCTAGCGTTGGAGTTG 60.736 60.000 0.00 0.00 0.00 3.16
557 558 0.736325 CGGTCTAGCGTTGGAGTTGG 60.736 60.000 0.00 0.00 0.00 3.77
558 559 0.320697 GGTCTAGCGTTGGAGTTGGT 59.679 55.000 0.00 0.00 0.00 3.67
559 560 1.270678 GGTCTAGCGTTGGAGTTGGTT 60.271 52.381 0.00 0.00 0.00 3.67
560 561 2.490991 GTCTAGCGTTGGAGTTGGTTT 58.509 47.619 0.00 0.00 0.00 3.27
561 562 2.223377 GTCTAGCGTTGGAGTTGGTTTG 59.777 50.000 0.00 0.00 0.00 2.93
562 563 2.103432 TCTAGCGTTGGAGTTGGTTTGA 59.897 45.455 0.00 0.00 0.00 2.69
563 564 1.308998 AGCGTTGGAGTTGGTTTGAG 58.691 50.000 0.00 0.00 0.00 3.02
564 565 1.134220 AGCGTTGGAGTTGGTTTGAGA 60.134 47.619 0.00 0.00 0.00 3.27
565 566 1.880027 GCGTTGGAGTTGGTTTGAGAT 59.120 47.619 0.00 0.00 0.00 2.75
627 628 7.761249 GGTAATCCCAATCAAGAATGTCAAAAG 59.239 37.037 0.00 0.00 0.00 2.27
641 642 8.166726 AGAATGTCAAAAGAGAGGATTTTACCT 58.833 33.333 0.00 0.00 43.64 3.08
687 688 6.072175 TGTGTACATGATTTTTACTGGAAGCC 60.072 38.462 0.00 0.00 37.60 4.35
724 726 2.456119 GGCTGATCAACGACGCCTG 61.456 63.158 14.10 0.00 37.76 4.85
725 727 1.446099 GCTGATCAACGACGCCTGA 60.446 57.895 0.00 0.00 0.00 3.86
782 787 1.359117 GGCCTCGAACGATGATCGA 59.641 57.895 22.88 2.38 46.18 3.59
783 788 0.039074 GGCCTCGAACGATGATCGAT 60.039 55.000 22.88 10.05 46.98 3.59
784 789 1.199327 GGCCTCGAACGATGATCGATA 59.801 52.381 22.88 2.68 46.98 2.92
785 790 2.243407 GCCTCGAACGATGATCGATAC 58.757 52.381 22.88 10.62 46.98 2.24
786 791 2.350484 GCCTCGAACGATGATCGATACA 60.350 50.000 22.88 0.00 46.98 2.29
787 792 3.670895 GCCTCGAACGATGATCGATACAT 60.671 47.826 22.88 3.91 46.98 2.29
788 793 3.848582 CCTCGAACGATGATCGATACATG 59.151 47.826 22.88 6.67 46.98 3.21
789 794 4.378459 CCTCGAACGATGATCGATACATGA 60.378 45.833 22.88 8.89 46.98 3.07
790 795 5.296813 TCGAACGATGATCGATACATGAT 57.703 39.130 22.88 0.00 43.76 2.45
791 796 5.088739 TCGAACGATGATCGATACATGATG 58.911 41.667 22.88 0.00 43.76 3.07
792 797 4.263911 CGAACGATGATCGATACATGATGG 59.736 45.833 22.88 0.00 43.74 3.51
793 798 4.115401 ACGATGATCGATACATGATGGG 57.885 45.455 22.88 0.00 43.74 4.00
794 799 2.862536 CGATGATCGATACATGATGGGC 59.137 50.000 9.62 0.85 43.74 5.36
795 800 2.768253 TGATCGATACATGATGGGCC 57.232 50.000 0.00 0.00 0.00 5.80
796 801 1.278985 TGATCGATACATGATGGGCCC 59.721 52.381 17.59 17.59 0.00 5.80
797 802 0.620556 ATCGATACATGATGGGCCCC 59.379 55.000 22.27 4.91 0.00 5.80
798 803 1.375908 CGATACATGATGGGCCCCG 60.376 63.158 22.27 8.28 0.00 5.73
799 804 1.675641 GATACATGATGGGCCCCGC 60.676 63.158 22.27 12.16 0.00 6.13
800 805 3.551496 ATACATGATGGGCCCCGCG 62.551 63.158 22.27 5.72 0.00 6.46
802 807 4.648626 CATGATGGGCCCCGCGAT 62.649 66.667 22.27 5.46 0.00 4.58
803 808 4.335647 ATGATGGGCCCCGCGATC 62.336 66.667 22.27 16.26 0.00 3.69
805 810 4.562425 GATGGGCCCCGCGATCAA 62.562 66.667 22.27 0.00 0.00 2.57
806 811 4.875713 ATGGGCCCCGCGATCAAC 62.876 66.667 22.27 0.00 0.00 3.18
831 836 1.516386 TCGCTTGTCGATCGAAGCC 60.516 57.895 27.49 14.86 43.16 4.35
1017 1023 3.537874 ATGCTAGGGCCGTCGGTC 61.538 66.667 13.94 10.96 37.74 4.79
1409 1418 2.105806 GATGCGATCTCCCCAGGTCC 62.106 65.000 0.00 0.00 0.00 4.46
1457 1987 9.316730 TGTGTCGTCTTTTACAGTTTTACTTAT 57.683 29.630 0.00 0.00 0.00 1.73
1509 2146 2.496070 AGTCATTTAGCTACGCACCAGA 59.504 45.455 0.00 0.00 0.00 3.86
1518 2155 2.351726 GCTACGCACCAGACCAAATAAG 59.648 50.000 0.00 0.00 0.00 1.73
1546 2183 6.715344 AATTGATTCGCTCGTAAGTTTGTA 57.285 33.333 0.00 0.00 39.48 2.41
1678 3319 9.757227 AGCACTAATTATTACTGAGAAGATCAC 57.243 33.333 0.00 0.00 33.22 3.06
1722 3363 7.453126 TCCCTTTGTTTTAGAATAGCAAATGGA 59.547 33.333 0.00 0.00 39.61 3.41
1750 3391 4.689071 TGTCAGTGCCAATACTATAACCG 58.311 43.478 0.00 0.00 0.00 4.44
1784 3425 7.377398 TGAATATCTGATGTTTGTGGTTTTGG 58.623 34.615 0.00 0.00 0.00 3.28
1886 4016 8.110860 TGGATTTCTGTGATTTCTTAGGTTTC 57.889 34.615 0.00 0.00 0.00 2.78
1996 4126 4.377839 TTGTATGCTCTCTACTGCTGTC 57.622 45.455 0.00 0.00 0.00 3.51
2010 4140 0.036022 GCTGTCCCAGACAAGAGCTT 59.964 55.000 0.00 0.00 42.26 3.74
2110 4240 1.336125 GTCGAGTATTACAGGTCCCCG 59.664 57.143 0.00 0.00 0.00 5.73
2204 4334 1.224592 GATTGGATGTCTGGCCGGT 59.775 57.895 12.43 0.00 0.00 5.28
2347 4481 4.301628 GCTTTTCCTGTTTCATGGAACTG 58.698 43.478 17.76 16.35 41.47 3.16
2348 4482 4.797275 GCTTTTCCTGTTTCATGGAACTGG 60.797 45.833 28.62 28.62 45.03 4.00
2349 4483 1.909700 TCCTGTTTCATGGAACTGGC 58.090 50.000 29.33 1.88 44.00 4.85
2351 4485 1.542915 CCTGTTTCATGGAACTGGCAG 59.457 52.381 24.99 14.16 40.29 4.85
2354 4488 3.146066 TGTTTCATGGAACTGGCAGTAC 58.854 45.455 22.37 17.17 0.00 2.73
2359 4493 3.820467 TCATGGAACTGGCAGTACTTTTG 59.180 43.478 22.37 14.59 0.00 2.44
2373 4507 8.026607 GGCAGTACTTTTGCATTCAAATTAGTA 58.973 33.333 7.75 0.00 43.28 1.82
2375 4509 9.065871 CAGTACTTTTGCATTCAAATTAGTAGC 57.934 33.333 0.00 0.00 41.37 3.58
2379 4513 9.846248 ACTTTTGCATTCAAATTAGTAGCTAAG 57.154 29.630 0.00 0.00 41.37 2.18
2382 4516 9.624697 TTTGCATTCAAATTAGTAGCTAAGTTG 57.375 29.630 17.59 17.59 46.54 3.16
2383 4517 7.250569 TGCATTCAAATTAGTAGCTAAGTTGC 58.749 34.615 18.41 11.57 45.54 4.17
2384 4518 7.094420 TGCATTCAAATTAGTAGCTAAGTTGCA 60.094 33.333 18.41 13.38 45.54 4.08
2385 4519 7.754924 GCATTCAAATTAGTAGCTAAGTTGCAA 59.245 33.333 18.41 14.74 45.54 4.08
2398 4532 1.604604 GTTGCAAACCCTGTCAGCTA 58.395 50.000 0.00 0.00 42.21 3.32
2400 4534 0.764890 TGCAAACCCTGTCAGCTAGT 59.235 50.000 0.00 0.00 0.00 2.57
2401 4535 1.142870 TGCAAACCCTGTCAGCTAGTT 59.857 47.619 0.00 0.00 0.00 2.24
2405 4539 3.686916 AACCCTGTCAGCTAGTTCTTC 57.313 47.619 0.00 0.00 0.00 2.87
2406 4540 2.609747 ACCCTGTCAGCTAGTTCTTCA 58.390 47.619 0.00 0.00 0.00 3.02
2453 4587 7.199766 TGTTCTGCGATAATTTCTGTGTTTTT 58.800 30.769 0.00 0.00 0.00 1.94
2460 4594 8.788813 GCGATAATTTCTGTGTTTTTATGTGAG 58.211 33.333 0.00 0.00 0.00 3.51
2503 4637 5.220739 GCTATCTGCGTGTGATCAAAGATTT 60.221 40.000 0.00 0.00 0.00 2.17
2506 4640 6.110543 TCTGCGTGTGATCAAAGATTTATG 57.889 37.500 0.00 0.00 0.00 1.90
2519 4653 8.918202 TCAAAGATTTATGTAACAGTGTCCTT 57.082 30.769 0.00 0.00 0.00 3.36
2532 4666 7.964604 AACAGTGTCCTTATTAGTTTCACTC 57.035 36.000 0.00 0.00 33.35 3.51
2537 4671 8.697292 AGTGTCCTTATTAGTTTCACTCTATCC 58.303 37.037 0.00 0.00 30.43 2.59
2538 4672 7.648510 GTGTCCTTATTAGTTTCACTCTATCCG 59.351 40.741 0.00 0.00 0.00 4.18
2554 4738 6.049955 TCTATCCGTCACCTTCAAGAATTT 57.950 37.500 0.00 0.00 0.00 1.82
2556 4740 7.792032 TCTATCCGTCACCTTCAAGAATTTAT 58.208 34.615 0.00 0.00 0.00 1.40
2563 4747 7.413438 CGTCACCTTCAAGAATTTATCTTCCAG 60.413 40.741 0.00 0.00 45.42 3.86
2578 4762 9.760077 TTTATCTTCCAGTTTCGAGAATATACC 57.240 33.333 0.00 0.00 0.00 2.73
2580 4764 7.361457 TCTTCCAGTTTCGAGAATATACCAT 57.639 36.000 0.00 0.00 0.00 3.55
2584 4768 8.651589 TCCAGTTTCGAGAATATACCATAGAT 57.348 34.615 0.00 0.00 0.00 1.98
2621 4807 4.083164 TGTGTGCTTTGTGCTGATTGATAG 60.083 41.667 0.00 0.00 43.37 2.08
2757 4945 4.107072 AGAAGGGAATGAGGTGAAGATGA 58.893 43.478 0.00 0.00 0.00 2.92
2855 5043 2.285368 ACCCAGGCCATCTTCCGA 60.285 61.111 5.01 0.00 0.00 4.55
2907 5095 8.542497 TGTACCATGTCAATACAACTAGTTTC 57.458 34.615 5.07 0.00 39.58 2.78
2908 5096 7.604927 TGTACCATGTCAATACAACTAGTTTCC 59.395 37.037 5.07 0.00 39.58 3.13
2991 5179 7.765360 TGATTAAATTGCAAAATGATCCTCACC 59.235 33.333 1.71 0.00 0.00 4.02
3011 5199 1.208052 CCTCCATGATCGACCACTGTT 59.792 52.381 0.00 0.00 0.00 3.16
3121 5309 1.033746 AATGGGCCGACATGCTGAAG 61.034 55.000 0.00 0.00 0.00 3.02
3129 5317 0.955428 GACATGCTGAAGCCCGTGAA 60.955 55.000 0.00 0.00 41.18 3.18
3130 5318 1.237285 ACATGCTGAAGCCCGTGAAC 61.237 55.000 0.00 0.00 41.18 3.18
3134 5322 1.970917 GCTGAAGCCCGTGAACGATG 61.971 60.000 4.03 0.00 39.69 3.84
3261 5449 0.106268 TTGAGTTCAAGGCAAGCCCA 60.106 50.000 7.62 0.00 36.58 5.36
3265 5453 0.451783 GTTCAAGGCAAGCCCATACG 59.548 55.000 7.62 0.00 36.58 3.06
3283 5471 6.238211 CCCATACGAACAAGACATCAGAAATC 60.238 42.308 0.00 0.00 0.00 2.17
3373 5561 1.475682 GCCCTCTTCATGAAAAGGCAG 59.524 52.381 26.51 15.43 36.20 4.85
3385 5573 3.760151 TGAAAAGGCAGATCATGTTGGAG 59.240 43.478 0.00 0.00 0.00 3.86
3389 5577 1.820519 GGCAGATCATGTTGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
3390 5578 2.416431 GGCAGATCATGTTGGAGCAAAC 60.416 50.000 0.00 0.00 0.00 2.93
3411 5599 1.841302 ATGCCTCCGTTTCTGGCTCA 61.841 55.000 0.00 0.00 46.23 4.26
3423 5611 4.890158 TTCTGGCTCAAGAACACTGATA 57.110 40.909 0.00 0.00 31.19 2.15
3424 5612 4.462508 TCTGGCTCAAGAACACTGATAG 57.537 45.455 0.00 0.00 0.00 2.08
3425 5613 3.196469 TCTGGCTCAAGAACACTGATAGG 59.804 47.826 0.00 0.00 0.00 2.57
3430 5625 4.397417 GCTCAAGAACACTGATAGGCAAAT 59.603 41.667 0.00 0.00 0.00 2.32
3449 5644 7.684619 AGGCAAATTACAGGGGATATATCTACT 59.315 37.037 12.42 8.04 0.00 2.57
3456 5651 6.951971 ACAGGGGATATATCTACTTGATTGC 58.048 40.000 19.22 0.46 36.65 3.56
3457 5652 6.732862 ACAGGGGATATATCTACTTGATTGCT 59.267 38.462 19.22 2.73 36.65 3.91
3458 5653 7.046652 CAGGGGATATATCTACTTGATTGCTG 58.953 42.308 12.42 4.11 36.65 4.41
3459 5654 6.962311 AGGGGATATATCTACTTGATTGCTGA 59.038 38.462 12.42 0.00 36.65 4.26
3517 5719 7.039722 AGGGGTTTCTGTTAATAGGAATCAA 57.960 36.000 5.92 0.00 0.00 2.57
3518 5720 7.652554 AGGGGTTTCTGTTAATAGGAATCAAT 58.347 34.615 5.92 0.00 0.00 2.57
3527 5729 4.803329 AATAGGAATCAATGAGGGCTGT 57.197 40.909 0.00 0.00 0.00 4.40
3575 5777 4.037923 CACAAAACTACTCATGCACCCTTT 59.962 41.667 0.00 0.00 0.00 3.11
3580 5782 4.980573 ACTACTCATGCACCCTTTGTTTA 58.019 39.130 0.00 0.00 0.00 2.01
3598 5800 7.716768 TTGTTTACCGAAAAATGGGAATTTC 57.283 32.000 0.00 0.00 33.28 2.17
3605 5807 2.919666 AAATGGGAATTTCGCTGACG 57.080 45.000 13.78 0.00 42.01 4.35
3627 5829 4.033932 CGCAAACGTTGGATCAAGATGATA 59.966 41.667 6.92 0.00 33.84 2.15
3628 5830 5.266242 GCAAACGTTGGATCAAGATGATAC 58.734 41.667 6.92 0.00 37.20 2.24
3658 5860 4.992951 ACAAAGAGTTTATACACGGACACC 59.007 41.667 0.00 0.00 0.00 4.16
3667 5869 8.480501 AGTTTATACACGGACACCTGTAAATAT 58.519 33.333 0.00 0.00 0.00 1.28
3669 5871 9.748708 TTTATACACGGACACCTGTAAATATAC 57.251 33.333 0.00 0.00 0.00 1.47
3672 5874 5.870978 ACACGGACACCTGTAAATATACAAC 59.129 40.000 0.00 0.00 41.36 3.32
3677 5879 6.591062 GGACACCTGTAAATATACAACGTGAA 59.409 38.462 16.52 0.00 40.98 3.18
3691 5893 4.754618 ACAACGTGAAAGACATCATAGCAA 59.245 37.500 0.00 0.00 0.00 3.91
3943 6154 2.219458 GAGATGGACATGTCATGCCAG 58.781 52.381 26.47 1.80 38.93 4.85
3947 6158 0.254178 GGACATGTCATGCCAGTCCT 59.746 55.000 26.47 0.00 44.10 3.85
3949 6160 2.105477 GGACATGTCATGCCAGTCCTAT 59.895 50.000 26.47 0.00 44.10 2.57
3951 6162 4.019860 GGACATGTCATGCCAGTCCTATAT 60.020 45.833 26.47 0.00 44.10 0.86
3952 6163 5.513788 GGACATGTCATGCCAGTCCTATATT 60.514 44.000 26.47 0.00 44.10 1.28
3953 6164 5.555017 ACATGTCATGCCAGTCCTATATTC 58.445 41.667 12.91 0.00 0.00 1.75
3954 6165 4.623932 TGTCATGCCAGTCCTATATTCC 57.376 45.455 0.00 0.00 0.00 3.01
3955 6166 3.327757 TGTCATGCCAGTCCTATATTCCC 59.672 47.826 0.00 0.00 0.00 3.97
3956 6167 3.327757 GTCATGCCAGTCCTATATTCCCA 59.672 47.826 0.00 0.00 0.00 4.37
3957 6168 4.018960 GTCATGCCAGTCCTATATTCCCAT 60.019 45.833 0.00 0.00 0.00 4.00
3958 6169 4.019051 TCATGCCAGTCCTATATTCCCATG 60.019 45.833 0.00 0.00 0.00 3.66
3959 6170 2.040278 TGCCAGTCCTATATTCCCATGC 59.960 50.000 0.00 0.00 0.00 4.06
3960 6171 2.307098 GCCAGTCCTATATTCCCATGCT 59.693 50.000 0.00 0.00 0.00 3.79
3961 6172 3.245052 GCCAGTCCTATATTCCCATGCTT 60.245 47.826 0.00 0.00 0.00 3.91
3974 6185 5.708736 TCCCATGCTTTTAGAATCCTACA 57.291 39.130 0.00 0.00 0.00 2.74
3983 6194 9.077885 TGCTTTTAGAATCCTACAAATCAAAGT 57.922 29.630 0.00 0.00 0.00 2.66
3987 6198 4.396166 AGAATCCTACAAATCAAAGTGGCG 59.604 41.667 0.00 0.00 0.00 5.69
3997 6208 2.893637 TCAAAGTGGCGCTAATCTCTC 58.106 47.619 7.64 0.00 0.00 3.20
4002 6213 1.287503 GGCGCTAATCTCTCGGGAG 59.712 63.158 5.75 5.75 40.73 4.30
4003 6214 1.287503 GCGCTAATCTCTCGGGAGG 59.712 63.158 13.54 0.00 39.86 4.30
4008 6219 2.431057 GCTAATCTCTCGGGAGGTTTGA 59.569 50.000 21.76 2.27 39.66 2.69
4012 6223 2.605257 TCTCTCGGGAGGTTTGAAAGA 58.395 47.619 13.54 0.00 39.86 2.52
4014 6225 3.006967 TCTCTCGGGAGGTTTGAAAGAAG 59.993 47.826 13.54 0.00 39.86 2.85
4049 6260 1.268992 TTCCCCACACTATCACCCCG 61.269 60.000 0.00 0.00 0.00 5.73
4050 6261 2.742116 CCCCACACTATCACCCCGG 61.742 68.421 0.00 0.00 0.00 5.73
4051 6262 1.993391 CCCACACTATCACCCCGGT 60.993 63.158 0.00 0.00 0.00 5.28
4052 6263 1.220749 CCACACTATCACCCCGGTG 59.779 63.158 7.60 7.60 46.64 4.94
4094 6343 4.508052 GCATTTGCGTAATTTAATGCTGC 58.492 39.130 11.79 0.00 45.71 5.25
4100 6349 4.096231 TGCGTAATTTAATGCTGCATGAGT 59.904 37.500 17.00 7.42 32.39 3.41
4108 6357 8.594881 ATTTAATGCTGCATGAGTACTACTAC 57.405 34.615 17.00 0.00 0.00 2.73
4115 6364 8.258007 TGCTGCATGAGTACTACTACTAATTTT 58.742 33.333 0.00 0.00 32.96 1.82
4116 6365 9.099454 GCTGCATGAGTACTACTACTAATTTTT 57.901 33.333 0.00 0.00 32.96 1.94
4179 6428 5.811613 TCAGTGAAAGTGGCAAAATCTTTTG 59.188 36.000 10.36 10.36 42.16 2.44
4224 6477 7.606858 ATTACATCATTATGATTCGCTGAGG 57.393 36.000 4.77 0.00 34.28 3.86
4226 6479 4.040829 ACATCATTATGATTCGCTGAGGGA 59.959 41.667 4.77 0.00 34.28 4.20
4228 6481 5.034852 TCATTATGATTCGCTGAGGGAAA 57.965 39.130 15.99 0.98 37.97 3.13
4231 6484 2.680312 TGATTCGCTGAGGGAAAGAG 57.320 50.000 15.99 0.00 37.97 2.85
4236 6489 3.045601 TCGCTGAGGGAAAGAGAAAAG 57.954 47.619 0.00 0.00 0.00 2.27
4237 6490 2.079925 CGCTGAGGGAAAGAGAAAAGG 58.920 52.381 0.00 0.00 0.00 3.11
4241 6494 1.815613 GAGGGAAAGAGAAAAGGCAGC 59.184 52.381 0.00 0.00 0.00 5.25
4268 6521 0.026803 GACCACGTACGTACCTAGCG 59.973 60.000 22.34 10.32 0.00 4.26
4272 6525 1.005557 CACGTACGTACCTAGCGAGAC 60.006 57.143 22.34 0.00 0.00 3.36
4273 6526 1.280982 CGTACGTACCTAGCGAGACA 58.719 55.000 19.67 0.00 0.00 3.41
4274 6527 1.863454 CGTACGTACCTAGCGAGACAT 59.137 52.381 19.67 0.00 0.00 3.06
4275 6528 2.348311 CGTACGTACCTAGCGAGACATG 60.348 54.545 19.67 0.00 0.00 3.21
4302 6555 0.179119 GGCATGCAAGCACCTGAATC 60.179 55.000 21.36 0.00 35.83 2.52
4320 6573 2.572191 TCAAGCGGACCGTAATAGTG 57.428 50.000 16.73 5.16 0.00 2.74
4333 6586 4.058817 CGTAATAGTGGATGAGAAAGGGC 58.941 47.826 0.00 0.00 0.00 5.19
4341 6594 2.501723 GGATGAGAAAGGGCACACTAGA 59.498 50.000 0.00 0.00 0.00 2.43
4378 6632 0.326264 AATGTGGACAGAGACCAGCC 59.674 55.000 0.00 0.00 38.14 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.190578 CCGCTCCACCAATCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
1 2 3.411517 CCCGCTCCACCAATCCCT 61.412 66.667 0.00 0.00 0.00 4.20
2 3 3.407967 TCCCGCTCCACCAATCCC 61.408 66.667 0.00 0.00 0.00 3.85
3 4 2.124695 GTCCCGCTCCACCAATCC 60.125 66.667 0.00 0.00 0.00 3.01
4 5 2.511600 CGTCCCGCTCCACCAATC 60.512 66.667 0.00 0.00 0.00 2.67
5 6 3.000819 TCGTCCCGCTCCACCAAT 61.001 61.111 0.00 0.00 0.00 3.16
6 7 3.998672 GTCGTCCCGCTCCACCAA 61.999 66.667 0.00 0.00 0.00 3.67
25 26 4.452733 GGTTCCACCGAGGCTCCG 62.453 72.222 9.32 4.97 37.29 4.63
26 27 4.097361 GGGTTCCACCGAGGCTCC 62.097 72.222 9.32 0.00 39.83 4.70
27 28 3.316573 CTGGGTTCCACCGAGGCTC 62.317 68.421 3.87 3.87 40.01 4.70
28 29 3.322466 CTGGGTTCCACCGAGGCT 61.322 66.667 0.00 0.00 40.01 4.58
29 30 3.316573 CTCTGGGTTCCACCGAGGC 62.317 68.421 5.24 0.00 43.36 4.70
30 31 2.660064 CCTCTGGGTTCCACCGAGG 61.660 68.421 5.24 7.54 43.36 4.63
31 32 2.982130 CCTCTGGGTTCCACCGAG 59.018 66.667 0.00 0.00 44.37 4.63
32 33 3.319198 GCCTCTGGGTTCCACCGA 61.319 66.667 0.00 0.00 39.83 4.69
33 34 4.760047 CGCCTCTGGGTTCCACCG 62.760 72.222 0.00 0.00 39.83 4.94
34 35 4.410400 CCGCCTCTGGGTTCCACC 62.410 72.222 0.00 0.00 37.60 4.61
35 36 3.316573 CTCCGCCTCTGGGTTCCAC 62.317 68.421 0.00 0.00 34.45 4.02
36 37 3.003173 CTCCGCCTCTGGGTTCCA 61.003 66.667 0.00 0.00 34.45 3.53
37 38 3.787001 CCTCCGCCTCTGGGTTCC 61.787 72.222 0.00 0.00 34.45 3.62
38 39 3.787001 CCCTCCGCCTCTGGGTTC 61.787 72.222 0.00 0.00 36.32 3.62
48 49 3.451894 CCAATGTTGGCCCTCCGC 61.452 66.667 0.00 0.00 42.21 5.54
57 58 3.370978 GTCATAGTCCACGACCAATGTTG 59.629 47.826 0.00 0.00 32.11 3.33
58 59 3.260884 AGTCATAGTCCACGACCAATGTT 59.739 43.478 0.00 0.00 32.11 2.71
59 60 2.832129 AGTCATAGTCCACGACCAATGT 59.168 45.455 0.00 0.00 32.11 2.71
60 61 3.131223 AGAGTCATAGTCCACGACCAATG 59.869 47.826 0.00 0.00 32.18 2.82
61 62 3.131223 CAGAGTCATAGTCCACGACCAAT 59.869 47.826 0.00 0.00 32.18 3.16
62 63 2.492088 CAGAGTCATAGTCCACGACCAA 59.508 50.000 0.00 0.00 32.18 3.67
63 64 2.092323 CAGAGTCATAGTCCACGACCA 58.908 52.381 0.00 0.00 32.18 4.02
64 65 1.202313 GCAGAGTCATAGTCCACGACC 60.202 57.143 0.00 0.00 32.18 4.79
65 66 1.202313 GGCAGAGTCATAGTCCACGAC 60.202 57.143 0.00 0.00 0.00 4.34
66 67 1.103803 GGCAGAGTCATAGTCCACGA 58.896 55.000 0.00 0.00 0.00 4.35
67 68 0.817654 TGGCAGAGTCATAGTCCACG 59.182 55.000 0.00 0.00 0.00 4.94
68 69 2.831333 CATGGCAGAGTCATAGTCCAC 58.169 52.381 0.00 0.00 0.00 4.02
69 70 1.139654 GCATGGCAGAGTCATAGTCCA 59.860 52.381 0.00 0.00 0.00 4.02
70 71 1.139654 TGCATGGCAGAGTCATAGTCC 59.860 52.381 0.00 0.00 33.32 3.85
71 72 2.208431 GTGCATGGCAGAGTCATAGTC 58.792 52.381 0.00 0.00 40.08 2.59
72 73 1.134280 GGTGCATGGCAGAGTCATAGT 60.134 52.381 0.00 0.00 40.08 2.12
73 74 1.590932 GGTGCATGGCAGAGTCATAG 58.409 55.000 0.00 0.00 40.08 2.23
74 75 0.181114 GGGTGCATGGCAGAGTCATA 59.819 55.000 0.00 0.00 40.08 2.15
75 76 1.077212 GGGTGCATGGCAGAGTCAT 60.077 57.895 0.00 0.00 40.08 3.06
76 77 2.352422 GGGTGCATGGCAGAGTCA 59.648 61.111 0.00 0.00 40.08 3.41
77 78 2.439156 GGGGTGCATGGCAGAGTC 60.439 66.667 0.00 0.00 40.08 3.36
78 79 4.415150 CGGGGTGCATGGCAGAGT 62.415 66.667 0.00 0.00 40.08 3.24
91 92 4.087892 CTGACACCAGCTCCGGGG 62.088 72.222 0.00 0.00 33.07 5.73
158 159 4.335647 ACTGCAAGGGGTGGCGAG 62.336 66.667 0.00 0.00 39.30 5.03
159 160 4.641645 CACTGCAAGGGGTGGCGA 62.642 66.667 0.00 0.00 39.30 5.54
162 163 2.987547 CTGCACTGCAAGGGGTGG 60.988 66.667 4.99 0.00 38.32 4.61
163 164 3.677648 GCTGCACTGCAAGGGGTG 61.678 66.667 4.99 0.00 38.32 4.61
164 165 4.982701 GGCTGCACTGCAAGGGGT 62.983 66.667 4.99 0.00 38.32 4.95
187 188 2.108514 CACACATGGGCTAGTGGCG 61.109 63.158 0.00 0.00 42.94 5.69
188 189 1.750399 CCACACATGGGCTAGTGGC 60.750 63.158 0.00 0.00 44.25 5.01
189 190 4.643795 CCACACATGGGCTAGTGG 57.356 61.111 0.00 1.98 44.72 4.00
206 207 4.496336 ATGAAGGGAGGCGGCTGC 62.496 66.667 22.69 22.69 41.71 5.25
207 208 2.203126 GATGAAGGGAGGCGGCTG 60.203 66.667 19.63 0.00 0.00 4.85
208 209 3.854669 CGATGAAGGGAGGCGGCT 61.855 66.667 13.09 13.09 0.00 5.52
209 210 3.849951 TCGATGAAGGGAGGCGGC 61.850 66.667 0.00 0.00 0.00 6.53
210 211 2.107141 GTCGATGAAGGGAGGCGG 59.893 66.667 0.00 0.00 0.00 6.13
211 212 2.107141 GGTCGATGAAGGGAGGCG 59.893 66.667 0.00 0.00 0.00 5.52
212 213 1.330655 TGAGGTCGATGAAGGGAGGC 61.331 60.000 0.00 0.00 0.00 4.70
213 214 0.749649 CTGAGGTCGATGAAGGGAGG 59.250 60.000 0.00 0.00 0.00 4.30
214 215 0.103937 GCTGAGGTCGATGAAGGGAG 59.896 60.000 0.00 0.00 0.00 4.30
215 216 0.614697 TGCTGAGGTCGATGAAGGGA 60.615 55.000 0.00 0.00 0.00 4.20
216 217 0.460987 GTGCTGAGGTCGATGAAGGG 60.461 60.000 0.00 0.00 0.00 3.95
217 218 0.803768 CGTGCTGAGGTCGATGAAGG 60.804 60.000 0.00 0.00 0.00 3.46
218 219 0.171231 TCGTGCTGAGGTCGATGAAG 59.829 55.000 0.00 0.00 0.00 3.02
219 220 0.601057 TTCGTGCTGAGGTCGATGAA 59.399 50.000 0.00 0.00 33.72 2.57
220 221 0.109272 GTTCGTGCTGAGGTCGATGA 60.109 55.000 0.00 0.00 33.72 2.92
221 222 0.388520 TGTTCGTGCTGAGGTCGATG 60.389 55.000 0.00 0.00 33.72 3.84
222 223 0.317160 TTGTTCGTGCTGAGGTCGAT 59.683 50.000 0.00 0.00 33.72 3.59
223 224 0.318699 CTTGTTCGTGCTGAGGTCGA 60.319 55.000 0.00 0.00 0.00 4.20
224 225 1.284982 CCTTGTTCGTGCTGAGGTCG 61.285 60.000 0.00 0.00 0.00 4.79
225 226 0.033504 TCCTTGTTCGTGCTGAGGTC 59.966 55.000 0.00 0.00 0.00 3.85
226 227 0.468226 TTCCTTGTTCGTGCTGAGGT 59.532 50.000 0.00 0.00 0.00 3.85
227 228 1.151668 CTTCCTTGTTCGTGCTGAGG 58.848 55.000 0.00 0.00 0.00 3.86
228 229 1.795286 GTCTTCCTTGTTCGTGCTGAG 59.205 52.381 0.00 0.00 0.00 3.35
229 230 1.865865 GTCTTCCTTGTTCGTGCTGA 58.134 50.000 0.00 0.00 0.00 4.26
230 231 0.508641 CGTCTTCCTTGTTCGTGCTG 59.491 55.000 0.00 0.00 0.00 4.41
231 232 0.600255 CCGTCTTCCTTGTTCGTGCT 60.600 55.000 0.00 0.00 0.00 4.40
232 233 1.860078 CCGTCTTCCTTGTTCGTGC 59.140 57.895 0.00 0.00 0.00 5.34
233 234 0.878523 TGCCGTCTTCCTTGTTCGTG 60.879 55.000 0.00 0.00 0.00 4.35
234 235 0.034896 ATGCCGTCTTCCTTGTTCGT 59.965 50.000 0.00 0.00 0.00 3.85
235 236 0.443869 CATGCCGTCTTCCTTGTTCG 59.556 55.000 0.00 0.00 0.00 3.95
236 237 0.169009 GCATGCCGTCTTCCTTGTTC 59.831 55.000 6.36 0.00 0.00 3.18
237 238 0.537143 TGCATGCCGTCTTCCTTGTT 60.537 50.000 16.68 0.00 0.00 2.83
238 239 0.957395 CTGCATGCCGTCTTCCTTGT 60.957 55.000 16.68 0.00 0.00 3.16
239 240 0.957395 ACTGCATGCCGTCTTCCTTG 60.957 55.000 16.68 0.00 0.00 3.61
240 241 0.957395 CACTGCATGCCGTCTTCCTT 60.957 55.000 16.68 0.00 0.00 3.36
241 242 1.376424 CACTGCATGCCGTCTTCCT 60.376 57.895 16.68 0.00 0.00 3.36
242 243 3.181367 CACTGCATGCCGTCTTCC 58.819 61.111 16.68 0.00 0.00 3.46
265 266 2.701163 CTAGATTGGCCGTCTCCGCC 62.701 65.000 13.23 0.00 0.00 6.13
266 267 1.300233 CTAGATTGGCCGTCTCCGC 60.300 63.158 13.23 0.00 0.00 5.54
267 268 1.107538 TCCTAGATTGGCCGTCTCCG 61.108 60.000 13.23 6.90 0.00 4.63
268 269 1.343069 ATCCTAGATTGGCCGTCTCC 58.657 55.000 13.23 0.00 0.00 3.71
269 270 3.181465 TGAAATCCTAGATTGGCCGTCTC 60.181 47.826 13.23 2.46 0.00 3.36
270 271 2.771943 TGAAATCCTAGATTGGCCGTCT 59.228 45.455 14.17 14.17 0.00 4.18
271 272 3.194005 TGAAATCCTAGATTGGCCGTC 57.806 47.619 0.00 0.00 0.00 4.79
272 273 3.864789 ATGAAATCCTAGATTGGCCGT 57.135 42.857 0.00 0.00 0.00 5.68
273 274 4.261741 CCAAATGAAATCCTAGATTGGCCG 60.262 45.833 0.00 0.00 30.59 6.13
274 275 4.651045 ACCAAATGAAATCCTAGATTGGCC 59.349 41.667 0.00 0.00 39.49 5.36
275 276 5.859205 ACCAAATGAAATCCTAGATTGGC 57.141 39.130 0.00 0.00 39.49 4.52
276 277 9.807649 CTTAAACCAAATGAAATCCTAGATTGG 57.192 33.333 0.00 0.00 41.18 3.16
277 278 9.807649 CCTTAAACCAAATGAAATCCTAGATTG 57.192 33.333 0.00 0.00 0.00 2.67
278 279 9.547279 ACCTTAAACCAAATGAAATCCTAGATT 57.453 29.630 0.00 0.00 0.00 2.40
279 280 9.190317 GACCTTAAACCAAATGAAATCCTAGAT 57.810 33.333 0.00 0.00 0.00 1.98
280 281 8.167392 TGACCTTAAACCAAATGAAATCCTAGA 58.833 33.333 0.00 0.00 0.00 2.43
281 282 8.348285 TGACCTTAAACCAAATGAAATCCTAG 57.652 34.615 0.00 0.00 0.00 3.02
282 283 8.893563 ATGACCTTAAACCAAATGAAATCCTA 57.106 30.769 0.00 0.00 0.00 2.94
283 284 7.797121 ATGACCTTAAACCAAATGAAATCCT 57.203 32.000 0.00 0.00 0.00 3.24
284 285 8.846943 AAATGACCTTAAACCAAATGAAATCC 57.153 30.769 0.00 0.00 0.00 3.01
318 319 9.562583 GAACTATCCACGTGCATTAAAAATAAA 57.437 29.630 10.91 0.00 0.00 1.40
319 320 7.906010 CGAACTATCCACGTGCATTAAAAATAA 59.094 33.333 10.91 0.00 0.00 1.40
320 321 7.403421 CGAACTATCCACGTGCATTAAAAATA 58.597 34.615 10.91 0.00 0.00 1.40
321 322 6.255215 CGAACTATCCACGTGCATTAAAAAT 58.745 36.000 10.91 0.00 0.00 1.82
322 323 5.391097 CCGAACTATCCACGTGCATTAAAAA 60.391 40.000 10.91 0.00 0.00 1.94
323 324 4.093703 CCGAACTATCCACGTGCATTAAAA 59.906 41.667 10.91 0.00 0.00 1.52
324 325 3.619483 CCGAACTATCCACGTGCATTAAA 59.381 43.478 10.91 0.00 0.00 1.52
325 326 3.191669 CCGAACTATCCACGTGCATTAA 58.808 45.455 10.91 0.00 0.00 1.40
326 327 2.816689 CCGAACTATCCACGTGCATTA 58.183 47.619 10.91 0.07 0.00 1.90
327 328 1.651987 CCGAACTATCCACGTGCATT 58.348 50.000 10.91 0.00 0.00 3.56
328 329 0.810031 GCCGAACTATCCACGTGCAT 60.810 55.000 10.91 2.79 0.00 3.96
329 330 1.447140 GCCGAACTATCCACGTGCA 60.447 57.895 10.91 0.00 0.00 4.57
330 331 1.153628 AGCCGAACTATCCACGTGC 60.154 57.895 10.91 0.00 0.00 5.34
331 332 0.108804 ACAGCCGAACTATCCACGTG 60.109 55.000 9.08 9.08 0.00 4.49
332 333 0.108804 CACAGCCGAACTATCCACGT 60.109 55.000 0.00 0.00 0.00 4.49
333 334 0.172578 TCACAGCCGAACTATCCACG 59.827 55.000 0.00 0.00 0.00 4.94
334 335 2.000447 GTTCACAGCCGAACTATCCAC 59.000 52.381 4.47 0.00 41.70 4.02
335 336 2.380084 GTTCACAGCCGAACTATCCA 57.620 50.000 4.47 0.00 41.70 3.41
341 342 5.278604 ACATTAAAAAGTTCACAGCCGAAC 58.721 37.500 3.66 3.66 44.63 3.95
342 343 5.508200 ACATTAAAAAGTTCACAGCCGAA 57.492 34.783 0.00 0.00 0.00 4.30
343 344 6.621316 TTACATTAAAAAGTTCACAGCCGA 57.379 33.333 0.00 0.00 0.00 5.54
344 345 9.009327 CATATTACATTAAAAAGTTCACAGCCG 57.991 33.333 0.00 0.00 0.00 5.52
345 346 9.855021 ACATATTACATTAAAAAGTTCACAGCC 57.145 29.630 0.00 0.00 0.00 4.85
406 407 9.724839 GTCCGCTTAACTTAAATGCAAATATAA 57.275 29.630 0.00 0.00 0.00 0.98
407 408 8.065407 CGTCCGCTTAACTTAAATGCAAATATA 58.935 33.333 0.00 0.00 0.00 0.86
408 409 6.910433 CGTCCGCTTAACTTAAATGCAAATAT 59.090 34.615 0.00 0.00 0.00 1.28
409 410 6.128227 ACGTCCGCTTAACTTAAATGCAAATA 60.128 34.615 0.00 0.00 0.00 1.40
410 411 5.092781 CGTCCGCTTAACTTAAATGCAAAT 58.907 37.500 0.00 0.00 0.00 2.32
411 412 4.023878 ACGTCCGCTTAACTTAAATGCAAA 60.024 37.500 0.00 0.00 0.00 3.68
412 413 3.499157 ACGTCCGCTTAACTTAAATGCAA 59.501 39.130 0.00 0.00 0.00 4.08
413 414 3.068560 ACGTCCGCTTAACTTAAATGCA 58.931 40.909 0.00 0.00 0.00 3.96
414 415 3.734776 ACGTCCGCTTAACTTAAATGC 57.265 42.857 0.00 0.00 0.00 3.56
415 416 6.415573 ACAAAAACGTCCGCTTAACTTAAATG 59.584 34.615 0.00 0.00 0.00 2.32
416 417 6.497437 ACAAAAACGTCCGCTTAACTTAAAT 58.503 32.000 0.00 0.00 0.00 1.40
417 418 5.878133 ACAAAAACGTCCGCTTAACTTAAA 58.122 33.333 0.00 0.00 0.00 1.52
418 419 5.064452 TGACAAAAACGTCCGCTTAACTTAA 59.936 36.000 0.00 0.00 34.88 1.85
419 420 4.569966 TGACAAAAACGTCCGCTTAACTTA 59.430 37.500 0.00 0.00 34.88 2.24
420 421 3.374678 TGACAAAAACGTCCGCTTAACTT 59.625 39.130 0.00 0.00 34.88 2.66
421 422 2.937799 TGACAAAAACGTCCGCTTAACT 59.062 40.909 0.00 0.00 34.88 2.24
422 423 3.322230 TGACAAAAACGTCCGCTTAAC 57.678 42.857 0.00 0.00 34.88 2.01
423 424 3.374678 AGTTGACAAAAACGTCCGCTTAA 59.625 39.130 0.00 0.00 34.88 1.85
424 425 2.937799 AGTTGACAAAAACGTCCGCTTA 59.062 40.909 0.00 0.00 34.88 3.09
425 426 1.741145 AGTTGACAAAAACGTCCGCTT 59.259 42.857 0.00 0.00 34.88 4.68
426 427 1.063469 CAGTTGACAAAAACGTCCGCT 59.937 47.619 0.00 0.00 34.88 5.52
427 428 1.462791 CAGTTGACAAAAACGTCCGC 58.537 50.000 0.00 0.00 34.88 5.54
428 429 1.462791 GCAGTTGACAAAAACGTCCG 58.537 50.000 0.00 0.00 34.88 4.79
429 430 1.462791 CGCAGTTGACAAAAACGTCC 58.537 50.000 0.00 0.00 34.88 4.79
430 431 1.462791 CCGCAGTTGACAAAAACGTC 58.537 50.000 0.00 0.00 35.13 4.34
431 432 0.524604 GCCGCAGTTGACAAAAACGT 60.525 50.000 0.00 0.00 35.13 3.99
432 433 1.528248 CGCCGCAGTTGACAAAAACG 61.528 55.000 0.00 0.00 35.13 3.60
433 434 1.206115 CCGCCGCAGTTGACAAAAAC 61.206 55.000 0.00 0.00 0.00 2.43
434 435 1.064946 CCGCCGCAGTTGACAAAAA 59.935 52.632 0.00 0.00 0.00 1.94
435 436 2.718731 CCGCCGCAGTTGACAAAA 59.281 55.556 0.00 0.00 0.00 2.44
436 437 3.283684 CCCGCCGCAGTTGACAAA 61.284 61.111 0.00 0.00 0.00 2.83
451 452 4.702274 AGGTGCACCCAATGGCCC 62.702 66.667 32.29 3.91 36.42 5.80
452 453 2.779742 TACAGGTGCACCCAATGGCC 62.780 60.000 32.29 4.74 36.42 5.36
453 454 1.304052 TACAGGTGCACCCAATGGC 60.304 57.895 32.29 5.51 36.42 4.40
454 455 0.327924 TCTACAGGTGCACCCAATGG 59.672 55.000 32.29 18.99 36.42 3.16
455 456 2.086869 CTTCTACAGGTGCACCCAATG 58.913 52.381 32.29 25.09 36.42 2.82
456 457 1.004745 CCTTCTACAGGTGCACCCAAT 59.995 52.381 32.29 19.72 37.99 3.16
457 458 0.400213 CCTTCTACAGGTGCACCCAA 59.600 55.000 32.29 16.61 37.99 4.12
458 459 0.472925 TCCTTCTACAGGTGCACCCA 60.473 55.000 32.29 16.64 44.37 4.51
459 460 0.036294 GTCCTTCTACAGGTGCACCC 60.036 60.000 32.29 14.56 44.37 4.61
460 461 0.389948 CGTCCTTCTACAGGTGCACC 60.390 60.000 29.22 29.22 44.37 5.01
461 462 0.389948 CCGTCCTTCTACAGGTGCAC 60.390 60.000 8.80 8.80 44.37 4.57
462 463 0.830444 ACCGTCCTTCTACAGGTGCA 60.830 55.000 0.00 0.00 44.37 4.57
463 464 0.108756 GACCGTCCTTCTACAGGTGC 60.109 60.000 0.00 0.00 44.37 5.01
464 465 1.254026 TGACCGTCCTTCTACAGGTG 58.746 55.000 0.00 0.00 44.37 4.00
465 466 2.005370 TTGACCGTCCTTCTACAGGT 57.995 50.000 0.00 0.00 44.37 4.00
466 467 3.064931 GTTTTGACCGTCCTTCTACAGG 58.935 50.000 0.00 0.00 45.64 4.00
467 468 3.064931 GGTTTTGACCGTCCTTCTACAG 58.935 50.000 0.00 0.00 0.00 2.74
468 469 2.701951 AGGTTTTGACCGTCCTTCTACA 59.298 45.455 0.00 0.00 34.28 2.74
469 470 3.397849 AGGTTTTGACCGTCCTTCTAC 57.602 47.619 0.00 0.00 34.28 2.59
470 471 4.344679 TGTTAGGTTTTGACCGTCCTTCTA 59.655 41.667 0.00 0.00 34.28 2.10
471 472 3.135167 TGTTAGGTTTTGACCGTCCTTCT 59.865 43.478 0.00 0.00 34.28 2.85
472 473 3.249320 GTGTTAGGTTTTGACCGTCCTTC 59.751 47.826 0.00 0.00 34.28 3.46
473 474 3.208594 GTGTTAGGTTTTGACCGTCCTT 58.791 45.455 0.00 0.00 34.28 3.36
474 475 2.804212 CGTGTTAGGTTTTGACCGTCCT 60.804 50.000 0.00 0.00 34.28 3.85
475 476 1.528161 CGTGTTAGGTTTTGACCGTCC 59.472 52.381 0.00 0.00 34.28 4.79
476 477 1.528161 CCGTGTTAGGTTTTGACCGTC 59.472 52.381 0.00 0.00 34.28 4.79
477 478 1.134431 ACCGTGTTAGGTTTTGACCGT 60.134 47.619 0.00 0.00 43.00 4.83
478 479 1.528161 GACCGTGTTAGGTTTTGACCG 59.472 52.381 0.00 0.00 46.09 4.79
479 480 1.528161 CGACCGTGTTAGGTTTTGACC 59.472 52.381 0.00 0.00 46.09 4.02
480 481 2.204237 ACGACCGTGTTAGGTTTTGAC 58.796 47.619 0.00 0.00 46.09 3.18
481 482 2.472816 GACGACCGTGTTAGGTTTTGA 58.527 47.619 0.00 0.00 46.09 2.69
482 483 1.528161 GGACGACCGTGTTAGGTTTTG 59.472 52.381 0.00 0.00 46.09 2.44
483 484 1.138661 TGGACGACCGTGTTAGGTTTT 59.861 47.619 0.00 0.00 46.09 2.43
484 485 0.752054 TGGACGACCGTGTTAGGTTT 59.248 50.000 0.00 0.00 46.09 3.27
485 486 0.971386 ATGGACGACCGTGTTAGGTT 59.029 50.000 0.00 0.00 46.09 3.50
487 488 2.088950 AAATGGACGACCGTGTTAGG 57.911 50.000 0.00 0.00 39.42 2.69
488 489 3.368843 GGTAAAATGGACGACCGTGTTAG 59.631 47.826 8.76 0.00 36.05 2.34
489 490 3.324993 GGTAAAATGGACGACCGTGTTA 58.675 45.455 4.85 4.85 39.42 2.41
490 491 2.145536 GGTAAAATGGACGACCGTGTT 58.854 47.619 6.77 6.77 39.42 3.32
491 492 1.799544 GGTAAAATGGACGACCGTGT 58.200 50.000 0.00 0.00 39.42 4.49
499 500 3.069289 ACTTTCCGTCGGTAAAATGGAC 58.931 45.455 11.88 0.00 31.49 4.02
500 501 3.068560 CACTTTCCGTCGGTAAAATGGA 58.931 45.455 11.88 0.00 0.00 3.41
501 502 2.160813 CCACTTTCCGTCGGTAAAATGG 59.839 50.000 16.61 16.61 0.00 3.16
502 503 3.068560 TCCACTTTCCGTCGGTAAAATG 58.931 45.455 11.88 10.25 0.00 2.32
503 504 3.069289 GTCCACTTTCCGTCGGTAAAAT 58.931 45.455 11.88 0.00 0.00 1.82
504 505 2.158986 TGTCCACTTTCCGTCGGTAAAA 60.159 45.455 11.88 4.56 0.00 1.52
505 506 1.411977 TGTCCACTTTCCGTCGGTAAA 59.588 47.619 11.88 9.55 0.00 2.01
506 507 1.039068 TGTCCACTTTCCGTCGGTAA 58.961 50.000 11.88 7.20 0.00 2.85
507 508 1.039068 TTGTCCACTTTCCGTCGGTA 58.961 50.000 11.88 0.00 0.00 4.02
508 509 0.178533 TTTGTCCACTTTCCGTCGGT 59.821 50.000 11.88 0.00 0.00 4.69
509 510 1.003223 GTTTTGTCCACTTTCCGTCGG 60.003 52.381 4.39 4.39 0.00 4.79
510 511 1.332552 CGTTTTGTCCACTTTCCGTCG 60.333 52.381 0.00 0.00 0.00 5.12
511 512 1.935199 TCGTTTTGTCCACTTTCCGTC 59.065 47.619 0.00 0.00 0.00 4.79
512 513 1.667212 GTCGTTTTGTCCACTTTCCGT 59.333 47.619 0.00 0.00 0.00 4.69
513 514 1.937899 AGTCGTTTTGTCCACTTTCCG 59.062 47.619 0.00 0.00 0.00 4.30
514 515 2.681344 ACAGTCGTTTTGTCCACTTTCC 59.319 45.455 0.00 0.00 0.00 3.13
515 516 3.936661 GACAGTCGTTTTGTCCACTTTC 58.063 45.455 5.73 0.00 39.17 2.62
522 523 0.531311 ACCGGGACAGTCGTTTTGTC 60.531 55.000 6.32 7.76 43.25 3.18
523 524 0.531311 GACCGGGACAGTCGTTTTGT 60.531 55.000 6.32 0.00 0.00 2.83
524 525 0.249741 AGACCGGGACAGTCGTTTTG 60.250 55.000 6.32 0.00 39.31 2.44
525 526 1.271656 CTAGACCGGGACAGTCGTTTT 59.728 52.381 6.32 0.00 39.31 2.43
526 527 0.886563 CTAGACCGGGACAGTCGTTT 59.113 55.000 6.32 0.00 39.31 3.60
527 528 1.593296 GCTAGACCGGGACAGTCGTT 61.593 60.000 6.32 0.00 39.31 3.85
528 529 2.045131 GCTAGACCGGGACAGTCGT 61.045 63.158 6.32 0.00 39.31 4.34
529 530 2.799371 GCTAGACCGGGACAGTCG 59.201 66.667 6.32 0.00 39.31 4.18
530 531 1.593296 AACGCTAGACCGGGACAGTC 61.593 60.000 6.32 0.00 34.31 3.51
531 532 1.605738 AACGCTAGACCGGGACAGT 60.606 57.895 6.32 0.00 0.00 3.55
532 533 1.153823 CAACGCTAGACCGGGACAG 60.154 63.158 6.32 0.00 0.00 3.51
533 534 2.642254 CCAACGCTAGACCGGGACA 61.642 63.158 6.32 0.00 0.00 4.02
534 535 2.183555 CCAACGCTAGACCGGGAC 59.816 66.667 6.32 0.00 0.00 4.46
535 536 2.036098 TCCAACGCTAGACCGGGA 59.964 61.111 6.32 0.00 0.00 5.14
536 537 1.885163 AACTCCAACGCTAGACCGGG 61.885 60.000 6.32 0.00 0.00 5.73
537 538 0.736325 CAACTCCAACGCTAGACCGG 60.736 60.000 0.00 0.00 0.00 5.28
538 539 0.736325 CCAACTCCAACGCTAGACCG 60.736 60.000 0.00 0.00 0.00 4.79
539 540 0.320697 ACCAACTCCAACGCTAGACC 59.679 55.000 0.00 0.00 0.00 3.85
540 541 2.165319 AACCAACTCCAACGCTAGAC 57.835 50.000 0.00 0.00 0.00 2.59
541 542 2.103432 TCAAACCAACTCCAACGCTAGA 59.897 45.455 0.00 0.00 0.00 2.43
542 543 2.480419 CTCAAACCAACTCCAACGCTAG 59.520 50.000 0.00 0.00 0.00 3.42
543 544 2.103432 TCTCAAACCAACTCCAACGCTA 59.897 45.455 0.00 0.00 0.00 4.26
544 545 1.134220 TCTCAAACCAACTCCAACGCT 60.134 47.619 0.00 0.00 0.00 5.07
545 546 1.305201 TCTCAAACCAACTCCAACGC 58.695 50.000 0.00 0.00 0.00 4.84
546 547 4.566004 TCTATCTCAAACCAACTCCAACG 58.434 43.478 0.00 0.00 0.00 4.10
547 548 6.877611 TTTCTATCTCAAACCAACTCCAAC 57.122 37.500 0.00 0.00 0.00 3.77
548 549 7.060421 ACTTTTCTATCTCAAACCAACTCCAA 58.940 34.615 0.00 0.00 0.00 3.53
549 550 6.601332 ACTTTTCTATCTCAAACCAACTCCA 58.399 36.000 0.00 0.00 0.00 3.86
550 551 8.617290 TTACTTTTCTATCTCAAACCAACTCC 57.383 34.615 0.00 0.00 0.00 3.85
556 557 9.140286 GCCATTTTTACTTTTCTATCTCAAACC 57.860 33.333 0.00 0.00 0.00 3.27
557 558 9.691362 TGCCATTTTTACTTTTCTATCTCAAAC 57.309 29.630 0.00 0.00 0.00 2.93
558 559 9.691362 GTGCCATTTTTACTTTTCTATCTCAAA 57.309 29.630 0.00 0.00 0.00 2.69
559 560 8.855110 TGTGCCATTTTTACTTTTCTATCTCAA 58.145 29.630 0.00 0.00 0.00 3.02
560 561 8.402798 TGTGCCATTTTTACTTTTCTATCTCA 57.597 30.769 0.00 0.00 0.00 3.27
561 562 9.691362 TTTGTGCCATTTTTACTTTTCTATCTC 57.309 29.630 0.00 0.00 0.00 2.75
598 599 6.078456 ACATTCTTGATTGGGATTACCTCA 57.922 37.500 0.00 0.00 41.11 3.86
681 682 1.168714 AGCGTGATTTTGAGGCTTCC 58.831 50.000 0.00 0.00 30.49 3.46
687 688 3.191371 AGCCCTTAAAGCGTGATTTTGAG 59.809 43.478 0.00 0.00 34.64 3.02
751 756 4.969196 AGGCCCATGTATCGCGCG 62.969 66.667 26.76 26.76 0.00 6.86
752 757 3.044305 GAGGCCCATGTATCGCGC 61.044 66.667 0.00 0.00 0.00 6.86
782 787 2.436109 GCGGGGCCCATCATGTAT 59.564 61.111 26.86 0.00 0.00 2.29
783 788 4.248842 CGCGGGGCCCATCATGTA 62.249 66.667 26.86 0.00 0.00 2.29
785 790 4.648626 ATCGCGGGGCCCATCATG 62.649 66.667 26.86 6.72 0.00 3.07
786 791 4.335647 GATCGCGGGGCCCATCAT 62.336 66.667 26.86 10.32 0.00 2.45
788 793 4.562425 TTGATCGCGGGGCCCATC 62.562 66.667 26.86 18.38 0.00 3.51
789 794 4.875713 GTTGATCGCGGGGCCCAT 62.876 66.667 26.86 8.37 0.00 4.00
792 797 3.810896 GTTGTTGATCGCGGGGCC 61.811 66.667 6.13 0.00 0.00 5.80
793 798 4.160635 CGTTGTTGATCGCGGGGC 62.161 66.667 6.13 0.00 0.00 5.80
794 799 4.160635 GCGTTGTTGATCGCGGGG 62.161 66.667 6.13 0.00 42.79 5.73
799 804 0.095245 AAGCGATGCGTTGTTGATCG 59.905 50.000 0.00 0.00 41.51 3.69
800 805 1.135972 ACAAGCGATGCGTTGTTGATC 60.136 47.619 12.59 0.00 32.93 2.92
801 806 0.874390 ACAAGCGATGCGTTGTTGAT 59.126 45.000 12.59 0.00 32.93 2.57
802 807 0.234625 GACAAGCGATGCGTTGTTGA 59.765 50.000 12.59 0.00 37.02 3.18
803 808 1.054348 CGACAAGCGATGCGTTGTTG 61.054 55.000 0.00 0.00 44.57 3.33
804 809 1.204062 CGACAAGCGATGCGTTGTT 59.796 52.632 0.00 0.00 44.57 2.83
805 810 1.663388 TCGACAAGCGATGCGTTGT 60.663 52.632 0.00 0.00 45.59 3.32
806 811 3.155424 TCGACAAGCGATGCGTTG 58.845 55.556 0.00 0.00 45.59 4.10
831 836 1.518572 GCATACGTGTCCCCGACTG 60.519 63.158 0.00 0.00 33.15 3.51
1393 1402 3.917760 CGGACCTGGGGAGATCGC 61.918 72.222 0.00 0.00 0.00 4.58
1394 1403 2.058595 AACGGACCTGGGGAGATCG 61.059 63.158 0.00 0.00 0.00 3.69
1395 1404 1.522569 CAACGGACCTGGGGAGATC 59.477 63.158 0.00 0.00 0.00 2.75
1396 1405 1.995626 CCAACGGACCTGGGGAGAT 60.996 63.158 0.00 0.00 0.00 2.75
1397 1406 2.606519 CCAACGGACCTGGGGAGA 60.607 66.667 0.00 0.00 0.00 3.71
1409 1418 1.607148 GAGAAAAGGGGTCAACCAACG 59.393 52.381 0.89 0.00 42.91 4.10
1498 2028 3.857052 TCTTATTTGGTCTGGTGCGTAG 58.143 45.455 0.00 0.00 0.00 3.51
1509 2146 7.775120 AGCGAATCAATTTGATCTTATTTGGT 58.225 30.769 12.15 4.48 35.76 3.67
1518 2155 6.037423 ACTTACGAGCGAATCAATTTGATC 57.963 37.500 12.15 5.76 35.76 2.92
1546 2183 3.678056 TCAATACAGAGTTGCTTCGGT 57.322 42.857 0.00 0.00 0.00 4.69
1579 2569 9.740239 TTAACTTATCAACATCACCGACTATAC 57.260 33.333 0.00 0.00 0.00 1.47
1659 3300 9.829507 CTCAAAGGTGATCTTCTCAGTAATAAT 57.170 33.333 0.00 0.00 33.94 1.28
1678 3319 0.875059 GAAGTCCCGTTGCTCAAAGG 59.125 55.000 7.47 7.47 39.25 3.11
1722 3363 2.639839 AGTATTGGCACTGACAGGAAGT 59.360 45.455 7.51 0.00 0.00 3.01
1733 3374 4.690122 AGACACGGTTATAGTATTGGCAC 58.310 43.478 0.00 0.00 0.00 5.01
1750 3391 9.539825 ACAAACATCAGATATTCAGATAGACAC 57.460 33.333 0.00 0.00 0.00 3.67
1784 3425 5.667626 TGGATATTCAGATAATCCCTAGGCC 59.332 44.000 2.05 0.00 0.00 5.19
1828 3507 8.931385 ACATAGAAAATGACATAAATTGTGCC 57.069 30.769 0.00 0.00 39.18 5.01
1863 3993 9.565213 CATGAAACCTAAGAAATCACAGAAATC 57.435 33.333 0.00 0.00 0.00 2.17
1886 4016 5.622007 GCCTCTCTAGCATACTCTTAGCATG 60.622 48.000 0.00 0.00 0.00 4.06
1996 4126 4.100653 TCATAGATGAAGCTCTTGTCTGGG 59.899 45.833 0.00 0.00 33.08 4.45
2010 4140 5.279859 GGTCTGCCATTGATCTCATAGATGA 60.280 44.000 0.00 0.00 32.73 2.92
2110 4240 1.001633 TGACCTTGCGGGACTAGAAAC 59.998 52.381 0.00 0.00 38.76 2.78
2204 4334 1.951209 TCAGCATCCCTCCACTTACA 58.049 50.000 0.00 0.00 0.00 2.41
2324 4457 3.321968 AGTTCCATGAAACAGGAAAAGCC 59.678 43.478 0.00 0.00 44.88 4.35
2347 4481 6.868339 ACTAATTTGAATGCAAAAGTACTGCC 59.132 34.615 2.14 0.00 46.19 4.85
2348 4482 7.873739 ACTAATTTGAATGCAAAAGTACTGC 57.126 32.000 2.14 0.00 46.19 4.40
2349 4483 9.065871 GCTACTAATTTGAATGCAAAAGTACTG 57.934 33.333 2.14 0.00 46.19 2.74
2354 4488 9.846248 ACTTAGCTACTAATTTGAATGCAAAAG 57.154 29.630 2.14 0.00 46.19 2.27
2359 4493 7.250569 TGCAACTTAGCTACTAATTTGAATGC 58.749 34.615 16.87 6.80 38.20 3.56
2373 4507 2.230660 GACAGGGTTTGCAACTTAGCT 58.769 47.619 0.00 0.00 34.99 3.32
2375 4509 2.030805 GCTGACAGGGTTTGCAACTTAG 60.031 50.000 0.00 0.00 0.00 2.18
2378 4512 0.106519 AGCTGACAGGGTTTGCAACT 60.107 50.000 0.00 0.00 0.00 3.16
2379 4513 1.537202 CTAGCTGACAGGGTTTGCAAC 59.463 52.381 0.00 0.00 0.00 4.17
2381 4515 0.764890 ACTAGCTGACAGGGTTTGCA 59.235 50.000 4.26 0.00 0.00 4.08
2382 4516 1.807142 GAACTAGCTGACAGGGTTTGC 59.193 52.381 4.26 0.00 0.00 3.68
2383 4517 3.409026 AGAACTAGCTGACAGGGTTTG 57.591 47.619 4.26 0.00 0.00 2.93
2384 4518 3.391296 TGAAGAACTAGCTGACAGGGTTT 59.609 43.478 4.26 0.00 0.00 3.27
2385 4519 2.972713 TGAAGAACTAGCTGACAGGGTT 59.027 45.455 4.26 0.00 0.00 4.11
2388 4522 5.911752 ACATATGAAGAACTAGCTGACAGG 58.088 41.667 10.38 0.00 0.00 4.00
2419 4553 8.946085 AGAAATTATCGCAGAACAAAACATAGA 58.054 29.630 0.00 0.00 43.58 1.98
2427 4561 5.940192 ACACAGAAATTATCGCAGAACAA 57.060 34.783 0.00 0.00 43.58 2.83
2429 4563 7.623268 AAAAACACAGAAATTATCGCAGAAC 57.377 32.000 0.00 0.00 43.58 3.01
2430 4564 9.340695 CATAAAAACACAGAAATTATCGCAGAA 57.659 29.630 0.00 0.00 43.58 3.02
2432 4566 8.577939 CACATAAAAACACAGAAATTATCGCAG 58.422 33.333 0.00 0.00 0.00 5.18
2434 4568 8.667987 TCACATAAAAACACAGAAATTATCGC 57.332 30.769 0.00 0.00 0.00 4.58
2435 4569 9.825972 ACTCACATAAAAACACAGAAATTATCG 57.174 29.630 0.00 0.00 0.00 2.92
2486 4620 7.240674 TGTTACATAAATCTTTGATCACACGC 58.759 34.615 0.00 0.00 0.00 5.34
2532 4666 7.928706 AGATAAATTCTTGAAGGTGACGGATAG 59.071 37.037 0.00 0.00 0.00 2.08
2537 4671 6.371548 TGGAAGATAAATTCTTGAAGGTGACG 59.628 38.462 0.00 0.00 44.88 4.35
2538 4672 7.391833 ACTGGAAGATAAATTCTTGAAGGTGAC 59.608 37.037 0.00 0.00 44.88 3.67
2554 4738 8.473358 TGGTATATTCTCGAAACTGGAAGATA 57.527 34.615 0.00 0.00 37.43 1.98
2556 4740 6.785337 TGGTATATTCTCGAAACTGGAAGA 57.215 37.500 0.00 0.00 37.43 2.87
2577 4761 9.836076 CACACATAAAGCATAATGAATCTATGG 57.164 33.333 0.00 0.00 0.00 2.74
2578 4762 9.338291 GCACACATAAAGCATAATGAATCTATG 57.662 33.333 0.00 0.00 0.00 2.23
2580 4764 8.681486 AGCACACATAAAGCATAATGAATCTA 57.319 30.769 0.00 0.00 0.00 1.98
2584 4768 7.328982 CACAAAGCACACATAAAGCATAATGAA 59.671 33.333 0.00 0.00 0.00 2.57
2657 4845 6.498304 GGGTGCAATTATGATGAACTAACTG 58.502 40.000 0.00 0.00 0.00 3.16
2757 4945 1.143305 GCATCGCTGACGCTCATATT 58.857 50.000 0.00 0.00 39.84 1.28
2855 5043 3.767673 TGAAGTGCGTAGGAGAATAGGTT 59.232 43.478 0.00 0.00 0.00 3.50
2991 5179 0.826715 ACAGTGGTCGATCATGGAGG 59.173 55.000 0.00 0.00 0.00 4.30
3011 5199 1.003118 ACCACCGCTGCAGAGAAATTA 59.997 47.619 20.43 0.00 0.00 1.40
3121 5309 1.278238 CTAGAACATCGTTCACGGGC 58.722 55.000 9.36 0.00 40.29 6.13
3129 5317 1.689273 GATGGCTCCCTAGAACATCGT 59.311 52.381 0.00 0.00 32.56 3.73
3130 5318 1.688735 TGATGGCTCCCTAGAACATCG 59.311 52.381 0.00 0.00 39.55 3.84
3134 5322 1.139853 CCTGTGATGGCTCCCTAGAAC 59.860 57.143 0.00 0.00 0.00 3.01
3159 5347 0.771127 TATATCCAACCCAGGCAGCC 59.229 55.000 1.84 1.84 0.00 4.85
3261 5449 7.905604 TTGATTTCTGATGTCTTGTTCGTAT 57.094 32.000 0.00 0.00 0.00 3.06
3265 5453 7.040823 ACCTCTTTGATTTCTGATGTCTTGTTC 60.041 37.037 0.00 0.00 0.00 3.18
3283 5471 2.941720 GCTGCAATCCTCTACCTCTTTG 59.058 50.000 0.00 0.00 0.00 2.77
3389 5577 2.946947 CCAGAAACGGAGGCATTGT 58.053 52.632 0.00 0.00 0.00 2.71
3395 5583 0.321671 TCTTGAGCCAGAAACGGAGG 59.678 55.000 0.00 0.00 0.00 4.30
3400 5588 3.206150 TCAGTGTTCTTGAGCCAGAAAC 58.794 45.455 0.00 0.00 34.50 2.78
3411 5599 6.375455 CCTGTAATTTGCCTATCAGTGTTCTT 59.625 38.462 0.00 0.00 0.00 2.52
3423 5611 6.977244 AGATATATCCCCTGTAATTTGCCT 57.023 37.500 9.18 0.00 0.00 4.75
3424 5612 7.862675 AGTAGATATATCCCCTGTAATTTGCC 58.137 38.462 9.18 0.00 0.00 4.52
3425 5613 9.167311 CAAGTAGATATATCCCCTGTAATTTGC 57.833 37.037 9.18 0.00 0.00 3.68
3430 5625 8.540388 GCAATCAAGTAGATATATCCCCTGTAA 58.460 37.037 9.18 0.00 35.39 2.41
3449 5644 8.181904 ACTTTAATTTCCTCTTCAGCAATCAA 57.818 30.769 0.00 0.00 0.00 2.57
3454 5649 5.630121 TGGACTTTAATTTCCTCTTCAGCA 58.370 37.500 4.86 0.00 32.55 4.41
3455 5650 5.392487 GCTGGACTTTAATTTCCTCTTCAGC 60.392 44.000 0.00 0.00 36.46 4.26
3456 5651 5.707298 TGCTGGACTTTAATTTCCTCTTCAG 59.293 40.000 4.86 0.00 32.55 3.02
3457 5652 5.630121 TGCTGGACTTTAATTTCCTCTTCA 58.370 37.500 4.86 0.00 32.55 3.02
3458 5653 5.124617 CCTGCTGGACTTTAATTTCCTCTTC 59.875 44.000 2.92 0.00 34.57 2.87
3459 5654 5.012893 CCTGCTGGACTTTAATTTCCTCTT 58.987 41.667 2.92 0.00 34.57 2.85
3527 5729 2.107366 TCACACTGATAATCGAGGCCA 58.893 47.619 5.01 0.00 0.00 5.36
3575 5777 5.921408 CGAAATTCCCATTTTTCGGTAAACA 59.079 36.000 9.30 0.00 46.32 2.83
3605 5807 3.829886 TCATCTTGATCCAACGTTTGC 57.170 42.857 0.00 0.00 0.00 3.68
3613 5815 3.779738 TGGGTGTGTATCATCTTGATCCA 59.220 43.478 0.00 0.00 38.26 3.41
3627 5829 5.529800 GTGTATAAACTCTTTGTGGGTGTGT 59.470 40.000 0.00 0.00 0.00 3.72
3628 5830 5.333798 CGTGTATAAACTCTTTGTGGGTGTG 60.334 44.000 0.00 0.00 0.00 3.82
3658 5860 9.901724 GATGTCTTTCACGTTGTATATTTACAG 57.098 33.333 0.00 0.00 39.43 2.74
3667 5869 5.474825 TGCTATGATGTCTTTCACGTTGTA 58.525 37.500 0.00 0.00 0.00 2.41
3669 5871 4.926860 TGCTATGATGTCTTTCACGTTG 57.073 40.909 0.00 0.00 0.00 4.10
3727 5933 8.866970 AATTGGATTGGCAAAATGAAACTTAT 57.133 26.923 3.01 0.00 0.00 1.73
3728 5934 8.688747 AAATTGGATTGGCAAAATGAAACTTA 57.311 26.923 3.01 0.00 0.00 2.24
3729 5935 7.585579 AAATTGGATTGGCAAAATGAAACTT 57.414 28.000 3.01 0.00 0.00 2.66
3772 5983 7.544217 GTGTAGTCACAATTTTCAAACTTTGGT 59.456 33.333 1.62 0.00 43.37 3.67
3868 6079 7.178983 TGCATCATAGGAGAAACAAAGGATTTT 59.821 33.333 0.00 0.00 35.03 1.82
3869 6080 6.664816 TGCATCATAGGAGAAACAAAGGATTT 59.335 34.615 0.00 0.00 40.26 2.17
3922 6133 1.224075 GGCATGACATGTCCATCTCG 58.776 55.000 22.85 6.20 0.00 4.04
3943 6154 8.870075 ATTCTAAAAGCATGGGAATATAGGAC 57.130 34.615 0.00 0.00 0.00 3.85
3947 6158 9.959721 GTAGGATTCTAAAAGCATGGGAATATA 57.040 33.333 0.00 0.00 0.00 0.86
3949 6160 7.811282 TGTAGGATTCTAAAAGCATGGGAATA 58.189 34.615 0.00 0.00 0.00 1.75
3951 6162 6.073447 TGTAGGATTCTAAAAGCATGGGAA 57.927 37.500 0.00 0.00 0.00 3.97
3952 6163 5.708736 TGTAGGATTCTAAAAGCATGGGA 57.291 39.130 0.00 0.00 0.00 4.37
3953 6164 6.773976 TTTGTAGGATTCTAAAAGCATGGG 57.226 37.500 0.00 0.00 0.00 4.00
3954 6165 7.999679 TGATTTGTAGGATTCTAAAAGCATGG 58.000 34.615 0.00 0.00 0.00 3.66
3955 6166 9.859427 TTTGATTTGTAGGATTCTAAAAGCATG 57.141 29.630 7.17 0.00 30.37 4.06
3957 6168 9.077885 ACTTTGATTTGTAGGATTCTAAAAGCA 57.922 29.630 1.94 2.94 0.00 3.91
3958 6169 9.346725 CACTTTGATTTGTAGGATTCTAAAAGC 57.653 33.333 1.94 0.88 0.00 3.51
3959 6170 9.846248 CCACTTTGATTTGTAGGATTCTAAAAG 57.154 33.333 0.82 0.82 0.00 2.27
3960 6171 8.303876 GCCACTTTGATTTGTAGGATTCTAAAA 58.696 33.333 0.00 0.00 0.00 1.52
3961 6172 7.361713 CGCCACTTTGATTTGTAGGATTCTAAA 60.362 37.037 0.00 0.00 0.00 1.85
3974 6185 4.265073 AGAGATTAGCGCCACTTTGATTT 58.735 39.130 2.29 0.00 0.00 2.17
3983 6194 1.455032 TCCCGAGAGATTAGCGCCA 60.455 57.895 2.29 0.00 0.00 5.69
3987 6198 2.431057 TCAAACCTCCCGAGAGATTAGC 59.569 50.000 0.00 0.00 43.39 3.09
3997 6208 0.517316 CGCTTCTTTCAAACCTCCCG 59.483 55.000 0.00 0.00 0.00 5.14
4002 6213 1.852280 GTGTTGCGCTTCTTTCAAACC 59.148 47.619 9.73 0.00 0.00 3.27
4003 6214 1.512771 CGTGTTGCGCTTCTTTCAAAC 59.487 47.619 9.73 2.08 0.00 2.93
4008 6219 1.507141 CCCTCGTGTTGCGCTTCTTT 61.507 55.000 9.73 0.00 41.07 2.52
4012 6223 1.381165 AAAACCCTCGTGTTGCGCTT 61.381 50.000 9.73 0.00 41.07 4.68
4014 6225 1.370051 GAAAACCCTCGTGTTGCGC 60.370 57.895 0.00 0.00 41.07 6.09
4033 6244 1.993391 ACCGGGGTGATAGTGTGGG 60.993 63.158 6.32 0.00 0.00 4.61
4034 6245 3.721868 ACCGGGGTGATAGTGTGG 58.278 61.111 6.32 0.00 0.00 4.17
4092 6341 9.297586 CGAAAAATTAGTAGTAGTACTCATGCA 57.702 33.333 13.60 0.00 40.23 3.96
4094 6343 8.753175 GGCGAAAAATTAGTAGTAGTACTCATG 58.247 37.037 13.60 0.00 40.23 3.07
4100 6349 9.362539 CTTTGAGGCGAAAAATTAGTAGTAGTA 57.637 33.333 0.00 0.00 0.00 1.82
4219 6472 3.080319 CTGCCTTTTCTCTTTCCCTCAG 58.920 50.000 0.00 0.00 0.00 3.35
4224 6477 1.270826 GTGGCTGCCTTTTCTCTTTCC 59.729 52.381 21.03 0.00 0.00 3.13
4226 6479 2.363359 CAAGTGGCTGCCTTTTCTCTTT 59.637 45.455 21.03 0.09 0.00 2.52
4228 6481 1.133668 ACAAGTGGCTGCCTTTTCTCT 60.134 47.619 21.03 5.85 0.00 3.10
4231 6484 1.032014 TCACAAGTGGCTGCCTTTTC 58.968 50.000 21.03 7.82 0.00 2.29
4236 6489 2.203337 TGGTCACAAGTGGCTGCC 60.203 61.111 12.87 12.87 35.13 4.85
4237 6490 2.896801 CGTGGTCACAAGTGGCTGC 61.897 63.158 4.67 0.00 35.13 5.25
4241 6494 0.249155 ACGTACGTGGTCACAAGTGG 60.249 55.000 22.14 0.00 39.64 4.00
4268 6521 3.589881 GCCCGGCATGCATGTCTC 61.590 66.667 27.48 16.07 0.00 3.36
4302 6555 1.135527 TCCACTATTACGGTCCGCTTG 59.864 52.381 12.28 0.09 0.00 4.01
4320 6573 2.501723 TCTAGTGTGCCCTTTCTCATCC 59.498 50.000 0.00 0.00 0.00 3.51
4333 6586 8.018520 TGTTGTTGTTTGTACTTTTCTAGTGTG 58.981 33.333 0.00 0.00 37.73 3.82
4341 6594 7.117092 GTCCACATTGTTGTTGTTTGTACTTTT 59.883 33.333 0.00 0.00 32.34 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.