Multiple sequence alignment - TraesCS2A01G358900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G358900 chr2A 100.000 6592 0 0 1 6592 602796345 602802936 0.000000e+00 12174
1 TraesCS2A01G358900 chr2A 92.150 293 17 4 581 867 771167052 771166760 6.150000e-110 409
2 TraesCS2A01G358900 chr2A 91.582 297 19 4 577 867 306176504 306176208 7.960000e-109 405
3 TraesCS2A01G358900 chr2A 87.838 296 32 3 3772 4065 474312995 474312702 1.760000e-90 344
4 TraesCS2A01G358900 chr2A 82.000 150 27 0 4140 4289 474311878 474311729 1.930000e-25 128
5 TraesCS2A01G358900 chr2D 95.409 2723 83 11 3334 6049 459825378 459828065 0.000000e+00 4298
6 TraesCS2A01G358900 chr2D 92.933 1217 58 10 869 2072 459824192 459825393 0.000000e+00 1746
7 TraesCS2A01G358900 chr2D 90.244 492 18 11 6125 6592 459828751 459829236 3.380000e-172 616
8 TraesCS2A01G358900 chr2D 92.833 293 21 0 266 558 459823873 459824165 6.110000e-115 425
9 TraesCS2A01G358900 chr2D 92.963 270 18 1 266 535 459814287 459814555 6.200000e-105 392
10 TraesCS2A01G358900 chr2D 88.000 300 31 4 3769 4065 354745965 354745668 3.780000e-92 350
11 TraesCS2A01G358900 chr2D 82.000 150 27 0 4140 4289 354745185 354745036 1.930000e-25 128
12 TraesCS2A01G358900 chr2B 94.723 2729 108 13 3333 6049 541094465 541097169 0.000000e+00 4209
13 TraesCS2A01G358900 chr2B 92.049 1220 62 13 874 2072 541093276 541094481 0.000000e+00 1683
14 TraesCS2A01G358900 chr2B 94.855 311 16 0 266 576 541092944 541093254 2.760000e-133 486
15 TraesCS2A01G358900 chr2B 87.838 296 32 3 3772 4065 421710615 421710322 1.760000e-90 344
16 TraesCS2A01G358900 chr2B 86.139 303 40 2 1672 1973 728190403 728190102 6.370000e-85 326
17 TraesCS2A01G358900 chr2B 91.000 200 15 3 365 563 541085884 541086081 3.920000e-67 267
18 TraesCS2A01G358900 chr2B 82.667 150 26 0 4140 4289 421709677 421709528 4.150000e-27 134
19 TraesCS2A01G358900 chr6B 99.371 1272 8 0 2065 3336 410233978 410235249 0.000000e+00 2305
20 TraesCS2A01G358900 chr6B 92.203 295 16 5 580 867 580307644 580307938 1.710000e-110 411
21 TraesCS2A01G358900 chr6B 94.677 263 14 0 1 263 658235897 658235635 6.150000e-110 409
22 TraesCS2A01G358900 chr5A 99.526 1266 6 0 2071 3336 648816878 648815613 0.000000e+00 2305
23 TraesCS2A01G358900 chr5A 92.256 297 17 4 577 867 611029900 611029604 3.680000e-112 416
24 TraesCS2A01G358900 chr5A 92.517 294 16 4 580 867 630124086 630123793 3.680000e-112 416
25 TraesCS2A01G358900 chr5A 82.828 198 31 2 298 495 619714888 619714694 2.440000e-39 174
26 TraesCS2A01G358900 chr4B 99.604 1263 5 0 2071 3333 5374125 5372863 0.000000e+00 2305
27 TraesCS2A01G358900 chr4B 99.525 1263 6 0 2071 3333 322671398 322670136 0.000000e+00 2300
28 TraesCS2A01G358900 chr4B 89.961 259 22 4 9 266 251475506 251475251 1.370000e-86 331
29 TraesCS2A01G358900 chr7A 99.604 1262 5 0 2071 3332 10638337 10637076 0.000000e+00 2303
30 TraesCS2A01G358900 chr7A 92.929 297 15 4 577 867 694135928 694135632 1.700000e-115 427
31 TraesCS2A01G358900 chr1B 99.604 1262 5 0 2071 3332 655770765 655769504 0.000000e+00 2303
32 TraesCS2A01G358900 chr1B 90.625 256 22 2 9 263 69179468 69179722 8.190000e-89 339
33 TraesCS2A01G358900 chr1B 85.489 317 45 1 1666 1981 486310339 486310655 4.930000e-86 329
34 TraesCS2A01G358900 chr5B 99.525 1264 6 0 2071 3334 138780584 138779321 0.000000e+00 2302
35 TraesCS2A01G358900 chr5B 91.373 255 20 2 10 263 461598142 461598395 1.360000e-91 348
36 TraesCS2A01G358900 chr5B 83.902 205 30 3 298 502 612978688 612978487 6.750000e-45 193
37 TraesCS2A01G358900 chr1A 99.525 1263 6 0 2071 3333 10078135 10076873 0.000000e+00 2300
38 TraesCS2A01G358900 chr6A 99.291 1270 9 0 2071 3340 146532453 146531184 0.000000e+00 2296
39 TraesCS2A01G358900 chr6A 92.177 294 17 4 580 867 297644045 297643752 1.710000e-110 411
40 TraesCS2A01G358900 chr6A 91.611 298 19 4 576 867 66822835 66823132 2.210000e-109 407
41 TraesCS2A01G358900 chr6A 90.551 254 23 1 10 263 1772579 1772327 1.060000e-87 335
42 TraesCS2A01G358900 chr4D 92.177 294 17 4 580 867 43651401 43651694 1.710000e-110 411
43 TraesCS2A01G358900 chr4D 91.339 254 21 1 10 263 485670394 485670646 4.890000e-91 346
44 TraesCS2A01G358900 chr7D 90.074 272 21 6 1 270 106995692 106995425 1.360000e-91 348
45 TraesCS2A01G358900 chr7D 90.945 254 19 3 10 263 32199865 32200114 8.190000e-89 339
46 TraesCS2A01G358900 chr3D 89.394 264 22 6 1 263 455750001 455750259 1.770000e-85 327
47 TraesCS2A01G358900 chr5D 83.838 198 29 2 298 495 495745302 495745108 1.130000e-42 185
48 TraesCS2A01G358900 chr5D 81.865 193 33 2 307 498 505347787 505347596 1.900000e-35 161
49 TraesCS2A01G358900 chr5D 80.597 201 31 7 309 503 552051447 552051645 1.480000e-31 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G358900 chr2A 602796345 602802936 6591 False 12174.00 12174 100.000000 1 6592 1 chr2A.!!$F1 6591
1 TraesCS2A01G358900 chr2A 474311729 474312995 1266 True 236.00 344 84.919000 3772 4289 2 chr2A.!!$R3 517
2 TraesCS2A01G358900 chr2D 459823873 459829236 5363 False 1771.25 4298 92.854750 266 6592 4 chr2D.!!$F2 6326
3 TraesCS2A01G358900 chr2D 354745036 354745965 929 True 239.00 350 85.000000 3769 4289 2 chr2D.!!$R1 520
4 TraesCS2A01G358900 chr2B 541092944 541097169 4225 False 2126.00 4209 93.875667 266 6049 3 chr2B.!!$F2 5783
5 TraesCS2A01G358900 chr2B 421709528 421710615 1087 True 239.00 344 85.252500 3772 4289 2 chr2B.!!$R2 517
6 TraesCS2A01G358900 chr6B 410233978 410235249 1271 False 2305.00 2305 99.371000 2065 3336 1 chr6B.!!$F1 1271
7 TraesCS2A01G358900 chr5A 648815613 648816878 1265 True 2305.00 2305 99.526000 2071 3336 1 chr5A.!!$R4 1265
8 TraesCS2A01G358900 chr4B 5372863 5374125 1262 True 2305.00 2305 99.604000 2071 3333 1 chr4B.!!$R1 1262
9 TraesCS2A01G358900 chr4B 322670136 322671398 1262 True 2300.00 2300 99.525000 2071 3333 1 chr4B.!!$R3 1262
10 TraesCS2A01G358900 chr7A 10637076 10638337 1261 True 2303.00 2303 99.604000 2071 3332 1 chr7A.!!$R1 1261
11 TraesCS2A01G358900 chr1B 655769504 655770765 1261 True 2303.00 2303 99.604000 2071 3332 1 chr1B.!!$R1 1261
12 TraesCS2A01G358900 chr5B 138779321 138780584 1263 True 2302.00 2302 99.525000 2071 3334 1 chr5B.!!$R1 1263
13 TraesCS2A01G358900 chr1A 10076873 10078135 1262 True 2300.00 2300 99.525000 2071 3333 1 chr1A.!!$R1 1262
14 TraesCS2A01G358900 chr6A 146531184 146532453 1269 True 2296.00 2296 99.291000 2071 3340 1 chr6A.!!$R2 1269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 587 0.110486 TTTCACAGGTTGAGGCCTCC 59.890 55.000 29.95 15.83 36.58 4.30 F
589 590 0.111253 CACAGGTTGAGGCCTCCTTT 59.889 55.000 29.95 11.09 36.58 3.11 F
590 591 0.111253 ACAGGTTGAGGCCTCCTTTG 59.889 55.000 29.95 22.45 36.58 2.77 F
597 598 0.112412 GAGGCCTCCTTTGGTTTGGA 59.888 55.000 23.19 0.00 31.76 3.53 F
598 599 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86 F
1342 1350 0.863144 TACGTGTTCGCTCTTTTGCC 59.137 50.000 0.00 0.00 41.18 4.52 F
1583 1599 1.293924 CTATGCTTCTGTTGAGGGCG 58.706 55.000 0.00 0.00 0.00 6.13 F
3514 3543 1.071699 GACAACAACCCCTGCTACTGA 59.928 52.381 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2233 2262 0.650512 CACATGACATTCCGCGGTAC 59.349 55.000 27.15 13.17 0.00 3.34 R
3340 3369 2.564504 AGCACTCTAGTTCAGTGATGCA 59.435 45.455 12.90 0.00 43.54 3.96 R
3344 3373 3.005897 GGTGAAGCACTCTAGTTCAGTGA 59.994 47.826 12.90 0.00 43.54 3.41 R
3345 3374 3.006323 AGGTGAAGCACTCTAGTTCAGTG 59.994 47.826 5.84 5.84 43.66 3.66 R
3346 3375 3.235200 AGGTGAAGCACTCTAGTTCAGT 58.765 45.455 0.00 0.00 34.40 3.41 R
3514 3543 4.647399 GTCCAGAGCAGAGACTTATTAGGT 59.353 45.833 0.00 0.00 0.00 3.08 R
4319 5142 6.426937 TCTCTCTTAAGTTGGTGTGCAAATAC 59.573 38.462 1.63 0.00 0.00 1.89 R
5958 6814 0.031314 CTGTCCCTGTCATCCGATCG 59.969 60.000 8.51 8.51 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.053291 GGTGCGGACGCCATGAAA 61.053 61.111 14.61 0.00 46.41 2.69
21 22 2.480555 GTGCGGACGCCATGAAAG 59.519 61.111 14.61 0.00 41.09 2.62
22 23 2.745884 TGCGGACGCCATGAAAGG 60.746 61.111 14.61 0.00 41.09 3.11
29 30 3.502572 GCCATGAAAGGCGAGTCC 58.497 61.111 0.00 0.00 46.12 3.85
30 31 1.377202 GCCATGAAAGGCGAGTCCA 60.377 57.895 0.00 0.00 46.12 4.02
31 32 0.749454 GCCATGAAAGGCGAGTCCAT 60.749 55.000 0.00 0.00 46.12 3.41
32 33 1.303309 CCATGAAAGGCGAGTCCATC 58.697 55.000 0.00 0.00 37.29 3.51
40 41 3.461773 CGAGTCCATCGCCAGGGT 61.462 66.667 0.00 0.00 45.98 4.34
41 42 2.990479 GAGTCCATCGCCAGGGTT 59.010 61.111 0.00 0.00 0.00 4.11
42 43 1.450312 GAGTCCATCGCCAGGGTTG 60.450 63.158 0.00 0.00 0.00 3.77
43 44 1.899437 GAGTCCATCGCCAGGGTTGA 61.899 60.000 0.00 0.00 0.00 3.18
44 45 1.224592 GTCCATCGCCAGGGTTGAT 59.775 57.895 0.00 0.00 0.00 2.57
45 46 1.097547 GTCCATCGCCAGGGTTGATG 61.098 60.000 12.78 12.78 39.32 3.07
46 47 3.831883 CATCGCCAGGGTTGATGG 58.168 61.111 12.20 0.00 41.04 3.51
47 48 1.224315 CATCGCCAGGGTTGATGGA 59.776 57.895 12.20 0.00 40.51 3.41
48 49 0.816825 CATCGCCAGGGTTGATGGAG 60.817 60.000 12.20 0.00 40.51 3.86
49 50 1.987807 ATCGCCAGGGTTGATGGAGG 61.988 60.000 0.00 0.00 40.51 4.30
50 51 2.440980 GCCAGGGTTGATGGAGGC 60.441 66.667 0.00 0.00 40.51 4.70
51 52 2.124570 CCAGGGTTGATGGAGGCG 60.125 66.667 0.00 0.00 40.51 5.52
52 53 2.124570 CAGGGTTGATGGAGGCGG 60.125 66.667 0.00 0.00 0.00 6.13
53 54 4.115199 AGGGTTGATGGAGGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
54 55 4.424711 GGGTTGATGGAGGCGGCA 62.425 66.667 13.08 0.00 0.00 5.69
55 56 3.134127 GGTTGATGGAGGCGGCAC 61.134 66.667 13.08 4.32 0.00 5.01
126 127 4.657077 CGAACGCGTCGTCTGATA 57.343 55.556 14.44 0.00 45.09 2.15
127 128 2.184244 CGAACGCGTCGTCTGATAC 58.816 57.895 14.44 0.00 45.09 2.24
128 129 1.192436 CGAACGCGTCGTCTGATACC 61.192 60.000 14.44 0.00 45.09 2.73
129 130 0.179181 GAACGCGTCGTCTGATACCA 60.179 55.000 14.44 0.00 39.99 3.25
130 131 0.454600 AACGCGTCGTCTGATACCAT 59.545 50.000 14.44 0.00 39.99 3.55
131 132 0.248498 ACGCGTCGTCTGATACCATG 60.248 55.000 5.58 0.00 33.69 3.66
132 133 0.248498 CGCGTCGTCTGATACCATGT 60.248 55.000 0.00 0.00 0.00 3.21
133 134 1.797713 CGCGTCGTCTGATACCATGTT 60.798 52.381 0.00 0.00 0.00 2.71
134 135 2.540157 CGCGTCGTCTGATACCATGTTA 60.540 50.000 0.00 0.00 0.00 2.41
135 136 3.043586 GCGTCGTCTGATACCATGTTAG 58.956 50.000 0.00 0.00 0.00 2.34
136 137 3.242969 GCGTCGTCTGATACCATGTTAGA 60.243 47.826 0.00 0.00 0.00 2.10
137 138 4.556898 GCGTCGTCTGATACCATGTTAGAT 60.557 45.833 0.00 0.00 0.00 1.98
138 139 5.334646 GCGTCGTCTGATACCATGTTAGATA 60.335 44.000 0.00 0.00 0.00 1.98
139 140 6.665465 CGTCGTCTGATACCATGTTAGATAA 58.335 40.000 0.00 0.00 0.00 1.75
140 141 7.136772 CGTCGTCTGATACCATGTTAGATAAA 58.863 38.462 0.00 0.00 0.00 1.40
141 142 7.646526 CGTCGTCTGATACCATGTTAGATAAAA 59.353 37.037 0.00 0.00 0.00 1.52
142 143 8.753175 GTCGTCTGATACCATGTTAGATAAAAC 58.247 37.037 0.00 0.00 0.00 2.43
143 144 8.692710 TCGTCTGATACCATGTTAGATAAAACT 58.307 33.333 0.00 0.00 0.00 2.66
144 145 9.961265 CGTCTGATACCATGTTAGATAAAACTA 57.039 33.333 0.00 0.00 0.00 2.24
147 148 9.712305 CTGATACCATGTTAGATAAAACTAGGG 57.288 37.037 0.00 0.00 32.07 3.53
148 149 9.220906 TGATACCATGTTAGATAAAACTAGGGT 57.779 33.333 0.00 0.00 34.48 4.34
151 152 8.575649 ACCATGTTAGATAAAACTAGGGTTTG 57.424 34.615 0.00 0.00 43.90 2.93
152 153 7.614192 ACCATGTTAGATAAAACTAGGGTTTGG 59.386 37.037 0.00 0.00 43.90 3.28
153 154 7.832187 CCATGTTAGATAAAACTAGGGTTTGGA 59.168 37.037 0.00 0.00 43.90 3.53
154 155 9.238368 CATGTTAGATAAAACTAGGGTTTGGAA 57.762 33.333 0.00 0.00 43.90 3.53
155 156 8.625786 TGTTAGATAAAACTAGGGTTTGGAAC 57.374 34.615 0.00 0.26 43.90 3.62
156 157 8.219178 TGTTAGATAAAACTAGGGTTTGGAACA 58.781 33.333 0.00 2.48 43.90 3.18
169 170 2.325583 TGGAACAATGCTCGATACCC 57.674 50.000 0.00 0.00 31.92 3.69
170 171 1.837439 TGGAACAATGCTCGATACCCT 59.163 47.619 0.00 0.00 31.92 4.34
171 172 2.158957 TGGAACAATGCTCGATACCCTC 60.159 50.000 0.00 0.00 31.92 4.30
172 173 2.158957 GGAACAATGCTCGATACCCTCA 60.159 50.000 0.00 0.00 0.00 3.86
173 174 2.604046 ACAATGCTCGATACCCTCAC 57.396 50.000 0.00 0.00 0.00 3.51
174 175 2.111384 ACAATGCTCGATACCCTCACT 58.889 47.619 0.00 0.00 0.00 3.41
175 176 2.159043 ACAATGCTCGATACCCTCACTG 60.159 50.000 0.00 0.00 0.00 3.66
176 177 1.043816 ATGCTCGATACCCTCACTGG 58.956 55.000 0.00 0.00 0.00 4.00
201 202 9.293404 GGGTACCGCTATCATGTATATATAAGA 57.707 37.037 5.65 0.00 40.86 2.10
221 222 8.921353 ATAAGAGAGAACGTATAGGTACATGT 57.079 34.615 2.69 2.69 0.00 3.21
223 224 8.921353 AAGAGAGAACGTATAGGTACATGTAT 57.079 34.615 9.18 0.00 0.00 2.29
224 225 8.921353 AGAGAGAACGTATAGGTACATGTATT 57.079 34.615 9.18 3.58 0.00 1.89
225 226 8.784994 AGAGAGAACGTATAGGTACATGTATTG 58.215 37.037 9.18 0.00 0.00 1.90
226 227 8.461249 AGAGAACGTATAGGTACATGTATTGT 57.539 34.615 9.18 2.21 42.62 2.71
227 228 8.350722 AGAGAACGTATAGGTACATGTATTGTG 58.649 37.037 9.18 0.00 39.48 3.33
228 229 8.004087 AGAACGTATAGGTACATGTATTGTGT 57.996 34.615 9.18 0.00 39.48 3.72
229 230 8.472413 AGAACGTATAGGTACATGTATTGTGTT 58.528 33.333 9.18 7.91 39.48 3.32
230 231 9.734620 GAACGTATAGGTACATGTATTGTGTTA 57.265 33.333 9.18 0.00 39.48 2.41
231 232 9.520204 AACGTATAGGTACATGTATTGTGTTAC 57.480 33.333 9.18 6.29 39.48 2.50
232 233 8.685427 ACGTATAGGTACATGTATTGTGTTACA 58.315 33.333 9.18 0.00 39.48 2.41
233 234 9.518906 CGTATAGGTACATGTATTGTGTTACAA 57.481 33.333 9.18 0.00 42.95 2.41
292 293 2.644798 AGGGAGAAAACCAGCACAGTAT 59.355 45.455 0.00 0.00 0.00 2.12
294 295 3.559171 GGGAGAAAACCAGCACAGTATCA 60.559 47.826 0.00 0.00 0.00 2.15
410 411 1.433879 CTTGTAGACGAGGGAGGCG 59.566 63.158 0.00 0.00 0.00 5.52
530 531 2.983592 GTGGGTTGTGGCCGGAAG 60.984 66.667 5.05 0.00 0.00 3.46
547 548 2.193993 GAAGGGAAGGGGTAACTGCTA 58.806 52.381 0.00 0.00 0.00 3.49
550 551 0.180642 GGAAGGGGTAACTGCTAGGC 59.819 60.000 0.00 0.00 0.00 3.93
576 577 0.762418 TCGTGGGTCATTTCACAGGT 59.238 50.000 0.00 0.00 33.83 4.00
578 579 1.266718 CGTGGGTCATTTCACAGGTTG 59.733 52.381 0.00 0.00 33.83 3.77
580 581 2.554032 GTGGGTCATTTCACAGGTTGAG 59.446 50.000 0.00 0.00 34.94 3.02
581 582 2.162681 GGGTCATTTCACAGGTTGAGG 58.837 52.381 0.00 0.00 34.94 3.86
583 584 1.541588 GTCATTTCACAGGTTGAGGCC 59.458 52.381 0.00 0.00 34.94 5.19
584 585 1.425066 TCATTTCACAGGTTGAGGCCT 59.575 47.619 3.86 3.86 39.99 5.19
585 586 1.815003 CATTTCACAGGTTGAGGCCTC 59.185 52.381 26.78 26.78 36.58 4.70
586 587 0.110486 TTTCACAGGTTGAGGCCTCC 59.890 55.000 29.95 15.83 36.58 4.30
587 588 0.768221 TTCACAGGTTGAGGCCTCCT 60.768 55.000 29.95 18.05 36.58 3.69
588 589 0.768221 TCACAGGTTGAGGCCTCCTT 60.768 55.000 29.95 9.13 36.58 3.36
589 590 0.111253 CACAGGTTGAGGCCTCCTTT 59.889 55.000 29.95 11.09 36.58 3.11
590 591 0.111253 ACAGGTTGAGGCCTCCTTTG 59.889 55.000 29.95 22.45 36.58 2.77
591 592 0.610232 CAGGTTGAGGCCTCCTTTGG 60.610 60.000 29.95 12.93 36.58 3.28
592 593 1.068352 AGGTTGAGGCCTCCTTTGGT 61.068 55.000 29.95 6.95 32.39 3.67
593 594 0.178961 GGTTGAGGCCTCCTTTGGTT 60.179 55.000 29.95 0.00 31.76 3.67
594 595 1.704641 GTTGAGGCCTCCTTTGGTTT 58.295 50.000 29.95 0.00 31.76 3.27
595 596 1.341209 GTTGAGGCCTCCTTTGGTTTG 59.659 52.381 29.95 0.00 31.76 2.93
596 597 0.178964 TGAGGCCTCCTTTGGTTTGG 60.179 55.000 29.95 0.00 31.76 3.28
597 598 0.112412 GAGGCCTCCTTTGGTTTGGA 59.888 55.000 23.19 0.00 31.76 3.53
598 599 0.113190 AGGCCTCCTTTGGTTTGGAG 59.887 55.000 0.00 0.00 46.91 3.86
607 608 6.745794 TCCTTTGGTTTGGAGAAATTTCAT 57.254 33.333 19.99 5.50 0.00 2.57
608 609 7.847711 TCCTTTGGTTTGGAGAAATTTCATA 57.152 32.000 19.99 3.23 0.00 2.15
609 610 7.895759 TCCTTTGGTTTGGAGAAATTTCATAG 58.104 34.615 19.99 2.60 0.00 2.23
610 611 7.039082 TCCTTTGGTTTGGAGAAATTTCATAGG 60.039 37.037 19.99 10.60 0.00 2.57
611 612 7.039082 CCTTTGGTTTGGAGAAATTTCATAGGA 60.039 37.037 19.99 0.73 29.59 2.94
612 613 7.847711 TTGGTTTGGAGAAATTTCATAGGAA 57.152 32.000 19.99 5.63 0.00 3.36
613 614 8.434589 TTGGTTTGGAGAAATTTCATAGGAAT 57.565 30.769 19.99 0.00 31.93 3.01
614 615 8.434589 TGGTTTGGAGAAATTTCATAGGAATT 57.565 30.769 19.99 0.00 31.93 2.17
615 616 8.531146 TGGTTTGGAGAAATTTCATAGGAATTC 58.469 33.333 19.99 6.17 31.93 2.17
616 617 8.753133 GGTTTGGAGAAATTTCATAGGAATTCT 58.247 33.333 19.99 5.84 35.88 2.40
667 668 9.802039 TTTCTTTAGAGCTTTTGGTTTATAGGA 57.198 29.630 0.00 0.00 0.00 2.94
668 669 9.802039 TTCTTTAGAGCTTTTGGTTTATAGGAA 57.198 29.630 0.00 0.00 0.00 3.36
669 670 9.975218 TCTTTAGAGCTTTTGGTTTATAGGAAT 57.025 29.630 0.00 0.00 0.00 3.01
696 697 9.398921 AGATTCCTATTCCTACATAGAATTGGT 57.601 33.333 11.79 0.00 43.14 3.67
699 700 7.974504 TCCTATTCCTACATAGAATTGGTTCC 58.025 38.462 11.79 0.00 43.14 3.62
700 701 7.794683 TCCTATTCCTACATAGAATTGGTTCCT 59.205 37.037 11.79 0.00 43.14 3.36
701 702 9.101325 CCTATTCCTACATAGAATTGGTTCCTA 57.899 37.037 6.00 0.00 39.97 2.94
704 705 7.554959 TCCTACATAGAATTGGTTCCTATCC 57.445 40.000 0.00 0.00 34.81 2.59
705 706 7.313731 TCCTACATAGAATTGGTTCCTATCCT 58.686 38.462 0.00 0.00 34.81 3.24
706 707 7.794683 TCCTACATAGAATTGGTTCCTATCCTT 59.205 37.037 0.00 0.00 34.81 3.36
707 708 8.097662 CCTACATAGAATTGGTTCCTATCCTTC 58.902 40.741 0.00 0.00 34.81 3.46
708 709 7.451731 ACATAGAATTGGTTCCTATCCTTCA 57.548 36.000 0.00 0.00 34.81 3.02
709 710 7.283329 ACATAGAATTGGTTCCTATCCTTCAC 58.717 38.462 0.00 0.00 34.81 3.18
710 711 5.779241 AGAATTGGTTCCTATCCTTCACA 57.221 39.130 0.00 0.00 34.81 3.58
711 712 6.332976 AGAATTGGTTCCTATCCTTCACAT 57.667 37.500 0.00 0.00 34.81 3.21
712 713 6.735556 AGAATTGGTTCCTATCCTTCACATT 58.264 36.000 0.00 0.00 34.81 2.71
713 714 7.184862 AGAATTGGTTCCTATCCTTCACATTT 58.815 34.615 0.00 0.00 34.81 2.32
714 715 7.340487 AGAATTGGTTCCTATCCTTCACATTTC 59.660 37.037 0.00 0.00 34.81 2.17
715 716 5.512942 TGGTTCCTATCCTTCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
716 717 6.078456 TGGTTCCTATCCTTCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
717 718 7.206789 TGGTTCCTATCCTTCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
718 719 7.282585 TGGTTCCTATCCTTCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
719 720 6.712547 GGTTCCTATCCTTCACATTTCATAGG 59.287 42.308 0.00 0.00 35.93 2.57
720 721 6.439636 TCCTATCCTTCACATTTCATAGGG 57.560 41.667 0.00 0.00 35.50 3.53
721 722 6.150332 TCCTATCCTTCACATTTCATAGGGA 58.850 40.000 0.00 0.00 35.50 4.20
722 723 6.619437 TCCTATCCTTCACATTTCATAGGGAA 59.381 38.462 0.00 0.00 35.50 3.97
736 737 8.608185 TTTCATAGGGAAATAAAAATGAGCCT 57.392 30.769 0.00 0.00 40.51 4.58
737 738 9.707957 TTTCATAGGGAAATAAAAATGAGCCTA 57.292 29.630 0.00 0.00 40.51 3.93
738 739 8.924511 TCATAGGGAAATAAAAATGAGCCTAG 57.075 34.615 0.00 0.00 0.00 3.02
739 740 8.723365 TCATAGGGAAATAAAAATGAGCCTAGA 58.277 33.333 0.00 0.00 0.00 2.43
740 741 8.787852 CATAGGGAAATAAAAATGAGCCTAGAC 58.212 37.037 0.00 0.00 0.00 2.59
741 742 6.974795 AGGGAAATAAAAATGAGCCTAGACT 58.025 36.000 0.00 0.00 0.00 3.24
742 743 7.057264 AGGGAAATAAAAATGAGCCTAGACTC 58.943 38.462 0.00 0.00 37.19 3.36
751 752 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
752 753 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
753 754 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
754 755 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
755 756 6.721208 TGAGCCTAGACTCAATGGAAAAATTT 59.279 34.615 6.25 0.00 43.59 1.82
756 757 7.094205 TGAGCCTAGACTCAATGGAAAAATTTC 60.094 37.037 6.25 0.00 43.59 2.17
757 758 6.950619 AGCCTAGACTCAATGGAAAAATTTCT 59.049 34.615 5.91 0.00 37.35 2.52
758 759 7.452813 AGCCTAGACTCAATGGAAAAATTTCTT 59.547 33.333 5.91 0.00 37.35 2.52
759 760 8.090831 GCCTAGACTCAATGGAAAAATTTCTTT 58.909 33.333 5.91 0.00 37.35 2.52
760 761 9.415544 CCTAGACTCAATGGAAAAATTTCTTTG 57.584 33.333 5.91 9.64 37.35 2.77
763 764 9.485206 AGACTCAATGGAAAAATTTCTTTGATG 57.515 29.630 17.14 14.66 37.95 3.07
764 765 9.264719 GACTCAATGGAAAAATTTCTTTGATGT 57.735 29.630 17.14 16.37 37.95 3.06
765 766 9.264719 ACTCAATGGAAAAATTTCTTTGATGTC 57.735 29.630 17.14 0.00 37.95 3.06
766 767 9.263538 CTCAATGGAAAAATTTCTTTGATGTCA 57.736 29.630 17.14 3.82 37.95 3.58
767 768 9.610705 TCAATGGAAAAATTTCTTTGATGTCAA 57.389 25.926 14.82 0.00 35.94 3.18
768 769 9.654417 CAATGGAAAAATTTCTTTGATGTCAAC 57.346 29.630 5.91 0.00 37.35 3.18
769 770 7.784633 TGGAAAAATTTCTTTGATGTCAACC 57.215 32.000 5.91 0.00 37.35 3.77
770 771 7.334090 TGGAAAAATTTCTTTGATGTCAACCA 58.666 30.769 5.91 0.00 37.35 3.67
771 772 7.826252 TGGAAAAATTTCTTTGATGTCAACCAA 59.174 29.630 5.91 0.00 37.35 3.67
772 773 8.672815 GGAAAAATTTCTTTGATGTCAACCAAA 58.327 29.630 5.91 0.00 37.35 3.28
775 776 8.961294 AAATTTCTTTGATGTCAACCAAATGA 57.039 26.923 9.92 3.38 35.28 2.57
786 787 5.356882 TCAACCAAATGACATCTCGTTTC 57.643 39.130 0.00 0.00 33.97 2.78
787 788 5.063204 TCAACCAAATGACATCTCGTTTCT 58.937 37.500 0.00 0.00 33.97 2.52
788 789 5.530915 TCAACCAAATGACATCTCGTTTCTT 59.469 36.000 0.00 0.00 33.97 2.52
789 790 6.708502 TCAACCAAATGACATCTCGTTTCTTA 59.291 34.615 0.00 0.00 33.97 2.10
790 791 7.390440 TCAACCAAATGACATCTCGTTTCTTAT 59.610 33.333 0.00 0.00 33.97 1.73
791 792 7.687941 ACCAAATGACATCTCGTTTCTTATT 57.312 32.000 0.00 0.00 33.97 1.40
792 793 7.752695 ACCAAATGACATCTCGTTTCTTATTC 58.247 34.615 0.00 0.00 33.97 1.75
793 794 7.148239 ACCAAATGACATCTCGTTTCTTATTCC 60.148 37.037 0.00 0.00 33.97 3.01
794 795 7.066284 CCAAATGACATCTCGTTTCTTATTCCT 59.934 37.037 0.00 0.00 33.97 3.36
795 796 9.098355 CAAATGACATCTCGTTTCTTATTCCTA 57.902 33.333 0.00 0.00 33.97 2.94
796 797 8.649973 AATGACATCTCGTTTCTTATTCCTAC 57.350 34.615 0.00 0.00 0.00 3.18
797 798 7.406031 TGACATCTCGTTTCTTATTCCTACT 57.594 36.000 0.00 0.00 0.00 2.57
798 799 7.481642 TGACATCTCGTTTCTTATTCCTACTC 58.518 38.462 0.00 0.00 0.00 2.59
799 800 7.122204 TGACATCTCGTTTCTTATTCCTACTCA 59.878 37.037 0.00 0.00 0.00 3.41
800 801 8.012957 ACATCTCGTTTCTTATTCCTACTCAT 57.987 34.615 0.00 0.00 0.00 2.90
801 802 9.132923 ACATCTCGTTTCTTATTCCTACTCATA 57.867 33.333 0.00 0.00 0.00 2.15
802 803 9.619316 CATCTCGTTTCTTATTCCTACTCATAG 57.381 37.037 0.00 0.00 0.00 2.23
803 804 8.975663 TCTCGTTTCTTATTCCTACTCATAGA 57.024 34.615 0.00 0.00 0.00 1.98
804 805 9.404848 TCTCGTTTCTTATTCCTACTCATAGAA 57.595 33.333 0.00 0.00 0.00 2.10
831 832 8.812513 TTGAAATACATGTCATCTCATTTCCT 57.187 30.769 19.51 0.00 33.49 3.36
832 833 9.904198 TTGAAATACATGTCATCTCATTTCCTA 57.096 29.630 19.51 10.12 33.49 2.94
833 834 9.330063 TGAAATACATGTCATCTCATTTCCTAC 57.670 33.333 19.51 4.17 33.49 3.18
834 835 9.330063 GAAATACATGTCATCTCATTTCCTACA 57.670 33.333 14.54 0.00 0.00 2.74
835 836 9.685276 AAATACATGTCATCTCATTTCCTACAA 57.315 29.630 0.00 0.00 0.00 2.41
836 837 9.685276 AATACATGTCATCTCATTTCCTACAAA 57.315 29.630 0.00 0.00 0.00 2.83
837 838 9.685276 ATACATGTCATCTCATTTCCTACAAAA 57.315 29.630 0.00 0.00 0.00 2.44
838 839 8.585471 ACATGTCATCTCATTTCCTACAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
839 840 9.028284 ACATGTCATCTCATTTCCTACAAAATT 57.972 29.630 0.00 0.00 0.00 1.82
840 841 9.865321 CATGTCATCTCATTTCCTACAAAATTT 57.135 29.630 0.00 0.00 0.00 1.82
842 843 9.300681 TGTCATCTCATTTCCTACAAAATTTCT 57.699 29.630 0.00 0.00 0.00 2.52
852 853 9.947433 TTTCCTACAAAATTTCTATTCCTACGA 57.053 29.630 0.00 0.00 0.00 3.43
854 855 9.760077 TCCTACAAAATTTCTATTCCTACGATC 57.240 33.333 0.00 0.00 0.00 3.69
855 856 8.989980 CCTACAAAATTTCTATTCCTACGATCC 58.010 37.037 0.00 0.00 0.00 3.36
856 857 9.765795 CTACAAAATTTCTATTCCTACGATCCT 57.234 33.333 0.00 0.00 0.00 3.24
956 964 3.819877 AAACTGGGACCGGTGCGTC 62.820 63.158 20.65 7.75 35.44 5.19
1229 1237 3.071206 GCTCCGGAGAGTGCTGGA 61.071 66.667 35.69 0.00 42.59 3.86
1342 1350 0.863144 TACGTGTTCGCTCTTTTGCC 59.137 50.000 0.00 0.00 41.18 4.52
1379 1387 3.448660 TCTCACACACACTCCCATCATAG 59.551 47.826 0.00 0.00 0.00 2.23
1381 1389 3.055891 TCACACACACTCCCATCATAGTG 60.056 47.826 0.00 0.00 46.84 2.74
1415 1423 5.653769 ACCATACTTCCAATTCCTGAACATG 59.346 40.000 0.00 0.00 0.00 3.21
1435 1443 2.124320 AACGGGTGCTTGCTGTGT 60.124 55.556 0.00 0.00 0.00 3.72
1436 1444 1.752694 AACGGGTGCTTGCTGTGTT 60.753 52.632 0.00 0.00 0.00 3.32
1504 1519 6.776744 ACTACCTCGTATACTCCATATGTCA 58.223 40.000 1.24 0.00 0.00 3.58
1551 1567 2.225019 AGTGAGAATTTGCTCTTGTGCG 59.775 45.455 0.00 0.00 35.91 5.34
1563 1579 3.393800 CTCTTGTGCGGGTCTATATTGG 58.606 50.000 0.00 0.00 0.00 3.16
1583 1599 1.293924 CTATGCTTCTGTTGAGGGCG 58.706 55.000 0.00 0.00 0.00 6.13
1612 1628 3.379057 TCAAGTGGCATTGCACATATCAG 59.621 43.478 11.39 0.00 0.00 2.90
1668 1697 4.584325 TCAGAACTTGAAAATGGAACCAGG 59.416 41.667 0.00 0.00 31.34 4.45
1689 1718 2.167075 GGCGTAGTAGTTGCTTAGGGAA 59.833 50.000 0.00 0.00 0.00 3.97
2233 2262 4.349342 ACTTGGAGAAGGCCTATGATAAGG 59.651 45.833 5.16 0.00 34.73 2.69
3514 3543 1.071699 GACAACAACCCCTGCTACTGA 59.928 52.381 0.00 0.00 0.00 3.41
3557 3586 2.636893 ACCCTGGCTGACATCTCATATC 59.363 50.000 0.00 0.00 0.00 1.63
3568 3597 7.281324 GCTGACATCTCATATCCGTAGTATAGT 59.719 40.741 0.00 0.00 0.00 2.12
4284 5107 1.539827 GCGTGCAATGGAGGTTAGTTT 59.460 47.619 0.00 0.00 0.00 2.66
4319 5142 5.173774 ACATGCTTCAAGTACTTGTGTTG 57.826 39.130 29.83 23.71 41.16 3.33
4519 5345 9.147732 TCATGTATGTACCATCTTCTATGTCTT 57.852 33.333 0.00 0.00 0.00 3.01
4528 5354 5.065731 CCATCTTCTATGTCTTTGAACTGGC 59.934 44.000 0.00 0.00 0.00 4.85
4557 5383 7.649533 ATTGTATGCTTCTTCCATTTGATGA 57.350 32.000 0.00 0.00 0.00 2.92
4566 5392 8.358148 GCTTCTTCCATTTGATGACATATCATT 58.642 33.333 0.00 0.00 46.01 2.57
4572 5398 8.003629 TCCATTTGATGACATATCATTTGGGTA 58.996 33.333 13.86 0.71 46.01 3.69
4654 5480 8.269424 GCTGTCAATCATTAACTGTATAAGACG 58.731 37.037 0.00 0.00 0.00 4.18
4835 5661 3.386078 GGAGTGGTGAGCATATTCTCTCA 59.614 47.826 3.99 0.21 37.03 3.27
4876 5702 8.593945 ATGAATGGTTTTTCTTATCCTGCTAA 57.406 30.769 0.00 0.00 0.00 3.09
5024 5850 0.473694 TGGAGGCAGAGGTCCTTCAA 60.474 55.000 0.00 0.00 36.31 2.69
5053 5879 0.108520 GGTCCCGCACACTTCGATTA 60.109 55.000 0.00 0.00 0.00 1.75
5429 6261 4.804608 TCTTTGGTGTGTGTATGTTTCG 57.195 40.909 0.00 0.00 0.00 3.46
5453 6285 3.975982 TCATAGATCATCTCCCTTGGCAA 59.024 43.478 0.00 0.00 0.00 4.52
5455 6287 3.505480 AGATCATCTCCCTTGGCAATC 57.495 47.619 0.00 0.00 0.00 2.67
5513 6345 0.531974 GGAACGCGCCTATGGATTCA 60.532 55.000 5.73 0.00 0.00 2.57
5560 6392 1.474077 GCTTGATTTTGAGGACGGCAT 59.526 47.619 0.00 0.00 0.00 4.40
5606 6438 0.025770 CGTGAGCGTGTTGTTCGTTT 59.974 50.000 0.00 0.00 0.00 3.60
5635 6467 1.683385 CCAGCATCCGATACTCAGACA 59.317 52.381 0.00 0.00 0.00 3.41
5639 6471 2.481969 GCATCCGATACTCAGACAAGCA 60.482 50.000 0.00 0.00 0.00 3.91
5642 6474 3.291584 TCCGATACTCAGACAAGCATCT 58.708 45.455 0.00 0.00 0.00 2.90
5645 6477 4.428209 CGATACTCAGACAAGCATCTTGT 58.572 43.478 11.52 11.52 34.97 3.16
5649 6481 4.454678 ACTCAGACAAGCATCTTGTTTCA 58.545 39.130 12.74 0.00 31.96 2.69
5650 6483 4.514441 ACTCAGACAAGCATCTTGTTTCAG 59.486 41.667 12.74 6.62 31.96 3.02
5653 6486 5.357878 TCAGACAAGCATCTTGTTTCAGTTT 59.642 36.000 12.74 0.00 31.96 2.66
5672 6505 7.676947 TCAGTTTAGTAGTAGAAGCAAATGGT 58.323 34.615 0.00 0.00 0.00 3.55
5692 6525 4.836736 TGGTTGCTACTCTACTTGGTAGTT 59.163 41.667 0.00 0.00 37.41 2.24
5694 6527 5.169295 GTTGCTACTCTACTTGGTAGTTGG 58.831 45.833 4.89 1.10 37.41 3.77
5696 6529 5.573219 TGCTACTCTACTTGGTAGTTGGTA 58.427 41.667 4.89 6.33 37.41 3.25
5734 6567 6.156256 TGCCTACATCCAGTTATGTAAACTCT 59.844 38.462 0.00 0.00 40.79 3.24
5793 6626 4.664688 AACCTTCCTTGTCTCATGGATT 57.335 40.909 5.45 0.00 37.50 3.01
5795 6628 3.588842 ACCTTCCTTGTCTCATGGATTCA 59.411 43.478 5.45 0.00 37.50 2.57
5808 6641 8.950210 GTCTCATGGATTCAGAAGTTAAATTCA 58.050 33.333 17.15 0.00 0.00 2.57
5874 6707 2.606717 TACAAGTACGACACTGAGCG 57.393 50.000 0.00 0.00 37.63 5.03
5885 6721 4.045104 CGACACTGAGCGCTAGAAAATAT 58.955 43.478 11.50 0.00 0.00 1.28
5926 6762 4.512914 GCCATGCTGGGAGGGACC 62.513 72.222 0.00 0.00 38.19 4.46
5944 6800 2.856000 CCATGGGGAGGGCTAGGG 60.856 72.222 2.85 0.00 35.59 3.53
5945 6801 2.856000 CATGGGGAGGGCTAGGGG 60.856 72.222 0.00 0.00 0.00 4.79
5946 6802 3.049288 ATGGGGAGGGCTAGGGGA 61.049 66.667 0.00 0.00 0.00 4.81
5947 6803 3.120493 ATGGGGAGGGCTAGGGGAG 62.120 68.421 0.00 0.00 0.00 4.30
5955 6811 3.942601 GCTAGGGGAGCGAAGAGT 58.057 61.111 0.00 0.00 42.62 3.24
5956 6812 1.439644 GCTAGGGGAGCGAAGAGTG 59.560 63.158 0.00 0.00 42.62 3.51
5957 6813 1.439644 CTAGGGGAGCGAAGAGTGC 59.560 63.158 0.00 0.00 0.00 4.40
5958 6814 2.022240 CTAGGGGAGCGAAGAGTGCC 62.022 65.000 0.00 0.00 0.00 5.01
5959 6815 4.821589 GGGGAGCGAAGAGTGCCG 62.822 72.222 0.00 0.00 0.00 5.69
5974 6830 2.498941 GCCGATCGGATGACAGGGA 61.499 63.158 37.64 0.00 37.50 4.20
6045 6901 5.289083 AGAGAAATGGAGGACAGAATAGC 57.711 43.478 0.00 0.00 0.00 2.97
6049 6905 5.428131 AGAAATGGAGGACAGAATAGCTTCT 59.572 40.000 0.00 0.00 42.59 2.85
6050 6906 4.953940 ATGGAGGACAGAATAGCTTCTC 57.046 45.455 0.00 0.00 39.78 2.87
6051 6907 2.690497 TGGAGGACAGAATAGCTTCTCG 59.310 50.000 0.00 0.00 39.78 4.04
6052 6908 2.544903 GGAGGACAGAATAGCTTCTCGC 60.545 54.545 0.00 0.00 39.78 5.03
6065 6921 1.664321 TTCTCGCTAGACTTCCGCCC 61.664 60.000 0.00 0.00 0.00 6.13
6066 6922 3.471244 CTCGCTAGACTTCCGCCCG 62.471 68.421 0.00 0.00 0.00 6.13
6067 6923 4.570663 CGCTAGACTTCCGCCCGG 62.571 72.222 0.00 0.00 0.00 5.73
6068 6924 3.145551 GCTAGACTTCCGCCCGGA 61.146 66.667 0.73 5.12 43.52 5.14
6070 6926 2.757099 TAGACTTCCGCCCGGACC 60.757 66.667 9.23 2.18 45.11 4.46
6071 6927 3.588817 TAGACTTCCGCCCGGACCA 62.589 63.158 9.23 0.00 45.11 4.02
6096 6952 4.767255 GACAGCGGCTGGGACCTG 62.767 72.222 31.38 8.22 35.51 4.00
6165 7631 1.343069 GATCATCGGCTACCCTTCCT 58.657 55.000 0.00 0.00 0.00 3.36
6166 7632 1.001406 GATCATCGGCTACCCTTCCTG 59.999 57.143 0.00 0.00 0.00 3.86
6167 7633 1.048724 TCATCGGCTACCCTTCCTGG 61.049 60.000 0.00 0.00 0.00 4.45
6168 7634 2.444256 ATCGGCTACCCTTCCTGGC 61.444 63.158 0.00 0.00 0.00 4.85
6169 7635 2.898472 ATCGGCTACCCTTCCTGGCT 62.898 60.000 0.00 0.00 0.00 4.75
6228 7695 3.414700 CGCGCACCAGTTCCTCAC 61.415 66.667 8.75 0.00 0.00 3.51
6266 7747 0.816421 AACGCAGGCGGTTTACTTGT 60.816 50.000 18.63 0.00 44.69 3.16
6294 7775 0.382515 GATGAGGCTCTAGCGAACGT 59.617 55.000 16.72 0.00 43.26 3.99
6306 7787 0.091344 GCGAACGTCGTGTCATTGAG 59.909 55.000 0.00 0.00 42.81 3.02
6313 7794 0.530288 TCGTGTCATTGAGATCGGCA 59.470 50.000 0.00 0.00 0.00 5.69
6401 7885 2.879462 GTCGTACTCGCTTGCCCG 60.879 66.667 0.00 0.00 36.96 6.13
6410 7894 2.815647 GCTTGCCCGTCTTCCTCG 60.816 66.667 0.00 0.00 0.00 4.63
6455 7944 1.442769 CATCCTTACAGCAGCACGTT 58.557 50.000 0.00 0.00 0.00 3.99
6477 7966 7.496263 ACGTTGGCCTTGTTTAATTGTATTTTT 59.504 29.630 3.32 0.00 0.00 1.94
6480 7969 6.146347 TGGCCTTGTTTAATTGTATTTTTCGC 59.854 34.615 3.32 0.00 0.00 4.70
6496 7985 9.232082 GTATTTTTCGCATATTCTTATTGCACA 57.768 29.630 0.00 0.00 0.00 4.57
6509 7998 3.615224 ATTGCACAAATGGGGATTGTC 57.385 42.857 0.00 0.00 38.90 3.18
6518 8007 1.381867 TGGGGATTGTCCTGGTTGAT 58.618 50.000 0.00 0.00 36.57 2.57
6526 8015 1.003118 TGTCCTGGTTGATGTAGTGCC 59.997 52.381 0.00 0.00 0.00 5.01
6534 8023 3.252458 GGTTGATGTAGTGCCGTTTCTTT 59.748 43.478 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.834013 TTTCATGGCGTCCGCACCA 62.834 57.895 14.19 3.56 44.11 4.17
3 4 3.039202 CTTTCATGGCGTCCGCACC 62.039 63.158 14.19 0.00 44.11 5.01
4 5 2.480555 CTTTCATGGCGTCCGCAC 59.519 61.111 14.19 3.78 44.11 5.34
5 6 2.745884 CCTTTCATGGCGTCCGCA 60.746 61.111 14.19 0.24 44.11 5.69
6 7 4.179579 GCCTTTCATGGCGTCCGC 62.180 66.667 2.45 2.45 43.74 5.54
13 14 1.303309 GATGGACTCGCCTTTCATGG 58.697 55.000 0.00 0.00 37.63 3.66
14 15 0.933097 CGATGGACTCGCCTTTCATG 59.067 55.000 0.00 0.00 41.14 3.07
15 16 3.369381 CGATGGACTCGCCTTTCAT 57.631 52.632 0.00 0.00 41.14 2.57
16 17 4.910956 CGATGGACTCGCCTTTCA 57.089 55.556 0.00 0.00 41.14 2.69
24 25 1.450312 CAACCCTGGCGATGGACTC 60.450 63.158 0.00 0.00 0.00 3.36
25 26 1.274703 ATCAACCCTGGCGATGGACT 61.275 55.000 0.00 0.00 0.00 3.85
26 27 1.097547 CATCAACCCTGGCGATGGAC 61.098 60.000 9.78 0.00 34.24 4.02
27 28 1.224315 CATCAACCCTGGCGATGGA 59.776 57.895 9.78 0.00 34.24 3.41
28 29 3.831883 CATCAACCCTGGCGATGG 58.168 61.111 9.78 0.00 34.24 3.51
29 30 0.816825 CTCCATCAACCCTGGCGATG 60.817 60.000 10.40 10.40 36.99 3.84
30 31 1.528824 CTCCATCAACCCTGGCGAT 59.471 57.895 0.00 0.00 33.56 4.58
31 32 2.669133 CCTCCATCAACCCTGGCGA 61.669 63.158 0.00 0.00 33.56 5.54
32 33 2.124570 CCTCCATCAACCCTGGCG 60.125 66.667 0.00 0.00 33.56 5.69
33 34 2.440980 GCCTCCATCAACCCTGGC 60.441 66.667 0.00 0.00 33.56 4.85
34 35 2.124570 CGCCTCCATCAACCCTGG 60.125 66.667 0.00 0.00 34.93 4.45
35 36 2.124570 CCGCCTCCATCAACCCTG 60.125 66.667 0.00 0.00 0.00 4.45
36 37 4.115199 GCCGCCTCCATCAACCCT 62.115 66.667 0.00 0.00 0.00 4.34
37 38 4.424711 TGCCGCCTCCATCAACCC 62.425 66.667 0.00 0.00 0.00 4.11
38 39 3.134127 GTGCCGCCTCCATCAACC 61.134 66.667 0.00 0.00 0.00 3.77
39 40 3.499737 CGTGCCGCCTCCATCAAC 61.500 66.667 0.00 0.00 0.00 3.18
40 41 4.776322 CCGTGCCGCCTCCATCAA 62.776 66.667 0.00 0.00 0.00 2.57
79 80 4.521062 CTTCCGCCTCCTCTGCCG 62.521 72.222 0.00 0.00 0.00 5.69
80 81 4.847444 GCTTCCGCCTCCTCTGCC 62.847 72.222 0.00 0.00 0.00 4.85
81 82 4.087892 TGCTTCCGCCTCCTCTGC 62.088 66.667 0.00 0.00 34.43 4.26
82 83 2.125350 GTGCTTCCGCCTCCTCTG 60.125 66.667 0.00 0.00 34.43 3.35
83 84 3.764466 CGTGCTTCCGCCTCCTCT 61.764 66.667 0.00 0.00 34.43 3.69
84 85 4.821589 CCGTGCTTCCGCCTCCTC 62.822 72.222 0.00 0.00 34.43 3.71
110 111 0.179181 TGGTATCAGACGACGCGTTC 60.179 55.000 15.53 8.26 41.37 3.95
111 112 0.454600 ATGGTATCAGACGACGCGTT 59.545 50.000 15.53 0.00 41.37 4.84
112 113 0.248498 CATGGTATCAGACGACGCGT 60.248 55.000 13.85 13.85 45.10 6.01
113 114 0.248498 ACATGGTATCAGACGACGCG 60.248 55.000 3.53 3.53 0.00 6.01
114 115 1.922570 AACATGGTATCAGACGACGC 58.077 50.000 0.00 0.00 0.00 5.19
115 116 4.547406 TCTAACATGGTATCAGACGACG 57.453 45.455 0.00 0.00 0.00 5.12
116 117 8.753175 GTTTTATCTAACATGGTATCAGACGAC 58.247 37.037 0.00 0.00 0.00 4.34
117 118 8.692710 AGTTTTATCTAACATGGTATCAGACGA 58.307 33.333 0.00 0.00 0.00 4.20
118 119 8.873215 AGTTTTATCTAACATGGTATCAGACG 57.127 34.615 0.00 0.00 0.00 4.18
121 122 9.712305 CCCTAGTTTTATCTAACATGGTATCAG 57.288 37.037 0.00 0.00 0.00 2.90
122 123 9.220906 ACCCTAGTTTTATCTAACATGGTATCA 57.779 33.333 0.00 0.00 0.00 2.15
125 126 9.675464 CAAACCCTAGTTTTATCTAACATGGTA 57.325 33.333 0.00 0.00 43.82 3.25
126 127 7.614192 CCAAACCCTAGTTTTATCTAACATGGT 59.386 37.037 0.00 0.00 43.82 3.55
127 128 7.832187 TCCAAACCCTAGTTTTATCTAACATGG 59.168 37.037 0.00 0.00 43.82 3.66
128 129 8.801882 TCCAAACCCTAGTTTTATCTAACATG 57.198 34.615 0.00 0.00 43.82 3.21
129 130 9.239551 GTTCCAAACCCTAGTTTTATCTAACAT 57.760 33.333 0.00 0.00 43.82 2.71
130 131 8.219178 TGTTCCAAACCCTAGTTTTATCTAACA 58.781 33.333 0.00 0.00 43.82 2.41
131 132 8.625786 TGTTCCAAACCCTAGTTTTATCTAAC 57.374 34.615 0.00 0.00 43.82 2.34
132 133 9.816787 ATTGTTCCAAACCCTAGTTTTATCTAA 57.183 29.630 0.00 0.00 43.82 2.10
133 134 9.238368 CATTGTTCCAAACCCTAGTTTTATCTA 57.762 33.333 0.00 0.00 43.82 1.98
134 135 7.309805 GCATTGTTCCAAACCCTAGTTTTATCT 60.310 37.037 0.00 0.00 43.82 1.98
135 136 6.811665 GCATTGTTCCAAACCCTAGTTTTATC 59.188 38.462 0.00 0.00 43.82 1.75
136 137 6.496911 AGCATTGTTCCAAACCCTAGTTTTAT 59.503 34.615 0.00 0.00 43.82 1.40
137 138 5.836358 AGCATTGTTCCAAACCCTAGTTTTA 59.164 36.000 0.00 0.00 43.82 1.52
138 139 4.653801 AGCATTGTTCCAAACCCTAGTTTT 59.346 37.500 0.00 0.00 43.82 2.43
140 141 3.826729 GAGCATTGTTCCAAACCCTAGTT 59.173 43.478 0.00 0.00 38.03 2.24
141 142 3.421844 GAGCATTGTTCCAAACCCTAGT 58.578 45.455 0.00 0.00 0.00 2.57
142 143 2.420022 CGAGCATTGTTCCAAACCCTAG 59.580 50.000 0.00 0.00 0.00 3.02
143 144 2.039216 TCGAGCATTGTTCCAAACCCTA 59.961 45.455 0.00 0.00 0.00 3.53
144 145 1.202879 TCGAGCATTGTTCCAAACCCT 60.203 47.619 0.00 0.00 0.00 4.34
145 146 1.243902 TCGAGCATTGTTCCAAACCC 58.756 50.000 0.00 0.00 0.00 4.11
146 147 3.181500 GGTATCGAGCATTGTTCCAAACC 60.181 47.826 0.00 0.00 0.00 3.27
147 148 3.181500 GGGTATCGAGCATTGTTCCAAAC 60.181 47.826 0.00 0.00 0.00 2.93
148 149 3.013921 GGGTATCGAGCATTGTTCCAAA 58.986 45.455 0.00 0.00 0.00 3.28
149 150 2.238646 AGGGTATCGAGCATTGTTCCAA 59.761 45.455 0.00 0.00 0.00 3.53
150 151 1.837439 AGGGTATCGAGCATTGTTCCA 59.163 47.619 0.00 0.00 0.00 3.53
151 152 2.158957 TGAGGGTATCGAGCATTGTTCC 60.159 50.000 0.00 0.00 0.00 3.62
152 153 2.866762 GTGAGGGTATCGAGCATTGTTC 59.133 50.000 0.00 0.00 0.00 3.18
153 154 2.501723 AGTGAGGGTATCGAGCATTGTT 59.498 45.455 0.00 0.00 0.00 2.83
154 155 2.111384 AGTGAGGGTATCGAGCATTGT 58.889 47.619 0.00 0.00 0.00 2.71
155 156 2.477825 CAGTGAGGGTATCGAGCATTG 58.522 52.381 0.00 0.00 0.00 2.82
156 157 1.414181 CCAGTGAGGGTATCGAGCATT 59.586 52.381 0.00 0.00 0.00 3.56
157 158 1.043816 CCAGTGAGGGTATCGAGCAT 58.956 55.000 0.00 0.00 0.00 3.79
158 159 2.504920 CCAGTGAGGGTATCGAGCA 58.495 57.895 0.00 0.00 0.00 4.26
168 169 0.674534 GATAGCGGTACCCAGTGAGG 59.325 60.000 6.25 0.00 37.03 3.86
169 170 1.399714 TGATAGCGGTACCCAGTGAG 58.600 55.000 6.25 0.00 0.00 3.51
170 171 1.686587 CATGATAGCGGTACCCAGTGA 59.313 52.381 6.25 0.00 0.00 3.41
171 172 1.412710 ACATGATAGCGGTACCCAGTG 59.587 52.381 6.25 0.00 0.00 3.66
172 173 1.789523 ACATGATAGCGGTACCCAGT 58.210 50.000 6.25 0.00 0.00 4.00
173 174 5.854010 ATATACATGATAGCGGTACCCAG 57.146 43.478 6.25 0.00 0.00 4.45
174 175 8.999905 TTATATATACATGATAGCGGTACCCA 57.000 34.615 6.25 0.00 0.00 4.51
175 176 9.293404 TCTTATATATACATGATAGCGGTACCC 57.707 37.037 6.25 0.00 0.00 3.69
196 197 8.921353 ACATGTACCTATACGTTCTCTCTTAT 57.079 34.615 0.00 0.00 33.60 1.73
198 199 8.921353 ATACATGTACCTATACGTTCTCTCTT 57.079 34.615 7.96 0.00 33.60 2.85
199 200 8.784994 CAATACATGTACCTATACGTTCTCTCT 58.215 37.037 7.96 0.00 33.60 3.10
200 201 8.566260 ACAATACATGTACCTATACGTTCTCTC 58.434 37.037 7.96 0.00 41.63 3.20
201 202 8.350722 CACAATACATGTACCTATACGTTCTCT 58.649 37.037 7.96 0.00 41.46 3.10
202 203 8.133627 ACACAATACATGTACCTATACGTTCTC 58.866 37.037 7.96 0.00 41.46 2.87
203 204 8.004087 ACACAATACATGTACCTATACGTTCT 57.996 34.615 7.96 0.00 41.46 3.01
204 205 8.638685 AACACAATACATGTACCTATACGTTC 57.361 34.615 7.96 0.00 41.46 3.95
205 206 9.520204 GTAACACAATACATGTACCTATACGTT 57.480 33.333 7.96 8.08 41.46 3.99
206 207 8.685427 TGTAACACAATACATGTACCTATACGT 58.315 33.333 7.96 0.00 41.46 3.57
207 208 9.518906 TTGTAACACAATACATGTACCTATACG 57.481 33.333 7.96 0.00 41.46 3.06
247 248 9.771140 CCTTGTCCCTATTAGACTAGGTATATT 57.229 37.037 11.65 0.00 46.09 1.28
254 255 5.954757 TCTCCCTTGTCCCTATTAGACTAG 58.045 45.833 0.00 0.00 37.01 2.57
255 256 6.351317 TTCTCCCTTGTCCCTATTAGACTA 57.649 41.667 0.00 0.00 35.21 2.59
256 257 4.901785 TCTCCCTTGTCCCTATTAGACT 57.098 45.455 0.00 0.00 35.21 3.24
257 258 5.952347 TTTCTCCCTTGTCCCTATTAGAC 57.048 43.478 0.00 0.00 34.72 2.59
258 259 5.191124 GGTTTTCTCCCTTGTCCCTATTAGA 59.809 44.000 0.00 0.00 0.00 2.10
259 260 5.045140 TGGTTTTCTCCCTTGTCCCTATTAG 60.045 44.000 0.00 0.00 0.00 1.73
260 261 4.853276 TGGTTTTCTCCCTTGTCCCTATTA 59.147 41.667 0.00 0.00 0.00 0.98
261 262 3.660669 TGGTTTTCTCCCTTGTCCCTATT 59.339 43.478 0.00 0.00 0.00 1.73
262 263 3.265489 TGGTTTTCTCCCTTGTCCCTAT 58.735 45.455 0.00 0.00 0.00 2.57
263 264 2.642807 CTGGTTTTCTCCCTTGTCCCTA 59.357 50.000 0.00 0.00 0.00 3.53
264 265 1.425448 CTGGTTTTCTCCCTTGTCCCT 59.575 52.381 0.00 0.00 0.00 4.20
530 531 0.837940 CCTAGCAGTTACCCCTTCCC 59.162 60.000 0.00 0.00 0.00 3.97
537 538 1.521681 CGCAGGCCTAGCAGTTACC 60.522 63.158 21.86 0.00 0.00 2.85
539 540 0.108329 GAACGCAGGCCTAGCAGTTA 60.108 55.000 23.01 0.00 32.15 2.24
550 551 1.234615 AAATGACCCACGAACGCAGG 61.235 55.000 0.00 0.00 0.00 4.85
576 577 1.703411 CAAACCAAAGGAGGCCTCAA 58.297 50.000 33.29 0.00 30.89 3.02
578 579 0.112412 TCCAAACCAAAGGAGGCCTC 59.888 55.000 25.59 25.59 30.89 4.70
580 581 2.658548 CTCCAAACCAAAGGAGGCC 58.341 57.895 0.00 0.00 46.11 5.19
584 585 6.745794 ATGAAATTTCTCCAAACCAAAGGA 57.254 33.333 18.64 0.00 0.00 3.36
585 586 7.039082 TCCTATGAAATTTCTCCAAACCAAAGG 60.039 37.037 18.64 9.83 0.00 3.11
586 587 7.895759 TCCTATGAAATTTCTCCAAACCAAAG 58.104 34.615 18.64 2.57 0.00 2.77
587 588 7.847711 TCCTATGAAATTTCTCCAAACCAAA 57.152 32.000 18.64 0.00 0.00 3.28
588 589 7.847711 TTCCTATGAAATTTCTCCAAACCAA 57.152 32.000 18.64 0.00 0.00 3.67
589 590 8.434589 AATTCCTATGAAATTTCTCCAAACCA 57.565 30.769 18.64 0.00 33.32 3.67
590 591 8.753133 AGAATTCCTATGAAATTTCTCCAAACC 58.247 33.333 18.64 2.11 28.28 3.27
641 642 9.802039 TCCTATAAACCAAAAGCTCTAAAGAAA 57.198 29.630 0.00 0.00 0.00 2.52
642 643 9.802039 TTCCTATAAACCAAAAGCTCTAAAGAA 57.198 29.630 0.00 0.00 0.00 2.52
643 644 9.975218 ATTCCTATAAACCAAAAGCTCTAAAGA 57.025 29.630 0.00 0.00 0.00 2.52
670 671 9.398921 ACCAATTCTATGTAGGAATAGGAATCT 57.601 33.333 0.00 0.00 33.65 2.40
673 674 8.437575 GGAACCAATTCTATGTAGGAATAGGAA 58.562 37.037 0.00 0.00 34.98 3.36
674 675 7.794683 AGGAACCAATTCTATGTAGGAATAGGA 59.205 37.037 0.00 0.00 34.98 2.94
675 676 7.978925 AGGAACCAATTCTATGTAGGAATAGG 58.021 38.462 0.00 0.00 34.98 2.57
678 679 8.606830 GGATAGGAACCAATTCTATGTAGGAAT 58.393 37.037 0.00 0.00 34.98 3.01
679 680 7.794683 AGGATAGGAACCAATTCTATGTAGGAA 59.205 37.037 0.00 0.00 34.98 3.36
680 681 7.313731 AGGATAGGAACCAATTCTATGTAGGA 58.686 38.462 0.00 0.00 34.98 2.94
681 682 7.560796 AGGATAGGAACCAATTCTATGTAGG 57.439 40.000 0.00 0.00 34.98 3.18
682 683 8.651389 TGAAGGATAGGAACCAATTCTATGTAG 58.349 37.037 0.00 0.00 34.98 2.74
683 684 8.429641 GTGAAGGATAGGAACCAATTCTATGTA 58.570 37.037 0.00 0.00 34.98 2.29
684 685 7.092444 TGTGAAGGATAGGAACCAATTCTATGT 60.092 37.037 0.00 0.00 34.98 2.29
685 686 7.282585 TGTGAAGGATAGGAACCAATTCTATG 58.717 38.462 0.00 0.00 34.98 2.23
686 687 7.451731 TGTGAAGGATAGGAACCAATTCTAT 57.548 36.000 0.00 0.00 34.98 1.98
687 688 6.884472 TGTGAAGGATAGGAACCAATTCTA 57.116 37.500 0.00 0.00 34.98 2.10
688 689 5.779241 TGTGAAGGATAGGAACCAATTCT 57.221 39.130 0.00 0.00 34.98 2.40
689 690 7.122650 TGAAATGTGAAGGATAGGAACCAATTC 59.877 37.037 0.00 0.00 0.00 2.17
690 691 6.953520 TGAAATGTGAAGGATAGGAACCAATT 59.046 34.615 0.00 0.00 0.00 2.32
691 692 6.493166 TGAAATGTGAAGGATAGGAACCAAT 58.507 36.000 0.00 0.00 0.00 3.16
692 693 5.886609 TGAAATGTGAAGGATAGGAACCAA 58.113 37.500 0.00 0.00 0.00 3.67
693 694 5.512942 TGAAATGTGAAGGATAGGAACCA 57.487 39.130 0.00 0.00 0.00 3.67
694 695 6.712547 CCTATGAAATGTGAAGGATAGGAACC 59.287 42.308 0.00 0.00 36.16 3.62
695 696 6.712547 CCCTATGAAATGTGAAGGATAGGAAC 59.287 42.308 0.00 0.00 36.16 3.62
696 697 6.619437 TCCCTATGAAATGTGAAGGATAGGAA 59.381 38.462 0.00 0.00 36.16 3.36
697 698 6.150332 TCCCTATGAAATGTGAAGGATAGGA 58.850 40.000 0.00 0.00 36.16 2.94
698 699 6.439636 TCCCTATGAAATGTGAAGGATAGG 57.560 41.667 0.00 0.00 34.56 2.57
711 712 8.608185 AGGCTCATTTTTATTTCCCTATGAAA 57.392 30.769 0.00 0.00 46.54 2.69
712 713 9.354673 CTAGGCTCATTTTTATTTCCCTATGAA 57.645 33.333 0.00 0.00 0.00 2.57
713 714 8.723365 TCTAGGCTCATTTTTATTTCCCTATGA 58.277 33.333 0.00 0.00 0.00 2.15
714 715 8.787852 GTCTAGGCTCATTTTTATTTCCCTATG 58.212 37.037 0.00 0.00 0.00 2.23
715 716 8.728098 AGTCTAGGCTCATTTTTATTTCCCTAT 58.272 33.333 0.00 0.00 0.00 2.57
716 717 8.102484 AGTCTAGGCTCATTTTTATTTCCCTA 57.898 34.615 0.00 0.00 0.00 3.53
717 718 6.974795 AGTCTAGGCTCATTTTTATTTCCCT 58.025 36.000 0.00 0.00 0.00 4.20
718 719 6.828785 TGAGTCTAGGCTCATTTTTATTTCCC 59.171 38.462 23.07 0.00 40.23 3.97
719 720 7.865706 TGAGTCTAGGCTCATTTTTATTTCC 57.134 36.000 23.07 0.00 40.23 3.13
720 721 9.727627 CATTGAGTCTAGGCTCATTTTTATTTC 57.272 33.333 26.91 0.00 43.99 2.17
721 722 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
722 723 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
723 724 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
724 725 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
725 726 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
726 727 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
727 728 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
728 729 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
729 730 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
730 731 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
731 732 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
732 733 6.950619 AGAAATTTTTCCATTGAGTCTAGGCT 59.049 34.615 0.00 0.00 37.92 4.58
733 734 7.163001 AGAAATTTTTCCATTGAGTCTAGGC 57.837 36.000 0.00 0.00 37.92 3.93
734 735 9.415544 CAAAGAAATTTTTCCATTGAGTCTAGG 57.584 33.333 11.06 0.00 36.99 3.02
737 738 9.485206 CATCAAAGAAATTTTTCCATTGAGTCT 57.515 29.630 18.59 7.42 42.03 3.24
738 739 9.264719 ACATCAAAGAAATTTTTCCATTGAGTC 57.735 29.630 18.59 0.00 42.03 3.36
739 740 9.264719 GACATCAAAGAAATTTTTCCATTGAGT 57.735 29.630 18.59 16.56 42.03 3.41
740 741 9.263538 TGACATCAAAGAAATTTTTCCATTGAG 57.736 29.630 18.59 14.80 42.03 3.02
741 742 9.610705 TTGACATCAAAGAAATTTTTCCATTGA 57.389 25.926 17.19 17.19 42.48 2.57
742 743 9.654417 GTTGACATCAAAGAAATTTTTCCATTG 57.346 29.630 0.00 10.58 37.63 2.82
743 744 8.839343 GGTTGACATCAAAGAAATTTTTCCATT 58.161 29.630 0.00 0.00 37.63 3.16
744 745 7.992033 TGGTTGACATCAAAGAAATTTTTCCAT 59.008 29.630 0.00 0.00 37.63 3.41
745 746 7.334090 TGGTTGACATCAAAGAAATTTTTCCA 58.666 30.769 0.00 0.00 37.63 3.53
746 747 7.784633 TGGTTGACATCAAAGAAATTTTTCC 57.215 32.000 0.00 0.00 37.63 3.13
749 750 9.393512 TCATTTGGTTGACATCAAAGAAATTTT 57.606 25.926 0.00 0.00 37.63 1.82
750 751 8.829612 GTCATTTGGTTGACATCAAAGAAATTT 58.170 29.630 0.00 0.00 44.38 1.82
751 752 8.369218 GTCATTTGGTTGACATCAAAGAAATT 57.631 30.769 0.00 0.00 44.38 1.82
752 753 7.951530 GTCATTTGGTTGACATCAAAGAAAT 57.048 32.000 0.00 1.89 44.38 2.17
763 764 4.749245 AACGAGATGTCATTTGGTTGAC 57.251 40.909 3.39 0.00 45.05 3.18
764 765 5.063204 AGAAACGAGATGTCATTTGGTTGA 58.937 37.500 4.80 0.00 0.00 3.18
765 766 5.362556 AGAAACGAGATGTCATTTGGTTG 57.637 39.130 4.80 0.00 0.00 3.77
766 767 7.687941 ATAAGAAACGAGATGTCATTTGGTT 57.312 32.000 0.00 0.00 0.00 3.67
767 768 7.148239 GGAATAAGAAACGAGATGTCATTTGGT 60.148 37.037 0.00 0.00 0.00 3.67
768 769 7.066284 AGGAATAAGAAACGAGATGTCATTTGG 59.934 37.037 0.00 0.00 0.00 3.28
769 770 7.978982 AGGAATAAGAAACGAGATGTCATTTG 58.021 34.615 0.00 0.00 0.00 2.32
770 771 9.099454 GTAGGAATAAGAAACGAGATGTCATTT 57.901 33.333 0.00 0.00 0.00 2.32
771 772 8.478877 AGTAGGAATAAGAAACGAGATGTCATT 58.521 33.333 0.00 0.00 0.00 2.57
772 773 8.012957 AGTAGGAATAAGAAACGAGATGTCAT 57.987 34.615 0.00 0.00 0.00 3.06
773 774 7.122204 TGAGTAGGAATAAGAAACGAGATGTCA 59.878 37.037 0.00 0.00 0.00 3.58
774 775 7.481642 TGAGTAGGAATAAGAAACGAGATGTC 58.518 38.462 0.00 0.00 0.00 3.06
775 776 7.406031 TGAGTAGGAATAAGAAACGAGATGT 57.594 36.000 0.00 0.00 0.00 3.06
776 777 9.619316 CTATGAGTAGGAATAAGAAACGAGATG 57.381 37.037 0.00 0.00 0.00 2.90
777 778 9.575868 TCTATGAGTAGGAATAAGAAACGAGAT 57.424 33.333 0.00 0.00 0.00 2.75
778 779 8.975663 TCTATGAGTAGGAATAAGAAACGAGA 57.024 34.615 0.00 0.00 0.00 4.04
805 806 9.246670 AGGAAATGAGATGACATGTATTTCAAA 57.753 29.630 22.03 5.89 36.66 2.69
806 807 8.812513 AGGAAATGAGATGACATGTATTTCAA 57.187 30.769 22.03 6.15 36.66 2.69
807 808 9.330063 GTAGGAAATGAGATGACATGTATTTCA 57.670 33.333 22.03 15.83 36.66 2.69
808 809 9.330063 TGTAGGAAATGAGATGACATGTATTTC 57.670 33.333 16.20 16.20 35.11 2.17
809 810 9.685276 TTGTAGGAAATGAGATGACATGTATTT 57.315 29.630 0.00 0.00 0.00 1.40
810 811 9.685276 TTTGTAGGAAATGAGATGACATGTATT 57.315 29.630 0.00 0.00 0.00 1.89
811 812 9.685276 TTTTGTAGGAAATGAGATGACATGTAT 57.315 29.630 0.00 0.00 0.00 2.29
812 813 9.685276 ATTTTGTAGGAAATGAGATGACATGTA 57.315 29.630 0.00 0.00 0.00 2.29
813 814 8.585471 ATTTTGTAGGAAATGAGATGACATGT 57.415 30.769 0.00 0.00 0.00 3.21
814 815 9.865321 AAATTTTGTAGGAAATGAGATGACATG 57.135 29.630 0.00 0.00 30.06 3.21
816 817 9.300681 AGAAATTTTGTAGGAAATGAGATGACA 57.699 29.630 0.00 0.00 30.06 3.58
826 827 9.947433 TCGTAGGAATAGAAATTTTGTAGGAAA 57.053 29.630 0.00 0.00 0.00 3.13
828 829 9.760077 GATCGTAGGAATAGAAATTTTGTAGGA 57.240 33.333 0.00 0.00 0.00 2.94
829 830 8.989980 GGATCGTAGGAATAGAAATTTTGTAGG 58.010 37.037 0.00 0.00 0.00 3.18
830 831 9.765795 AGGATCGTAGGAATAGAAATTTTGTAG 57.234 33.333 0.00 0.00 0.00 2.74
842 843 9.976776 ACTTCATAGAATAGGATCGTAGGAATA 57.023 33.333 1.16 0.00 28.27 1.75
843 844 8.887264 ACTTCATAGAATAGGATCGTAGGAAT 57.113 34.615 1.16 0.00 28.27 3.01
844 845 8.577296 CAACTTCATAGAATAGGATCGTAGGAA 58.423 37.037 1.16 0.00 28.27 3.36
845 846 7.176865 CCAACTTCATAGAATAGGATCGTAGGA 59.823 40.741 1.16 0.00 28.27 2.94
846 847 7.316640 CCAACTTCATAGAATAGGATCGTAGG 58.683 42.308 1.16 0.00 28.27 3.18
847 848 7.316640 CCCAACTTCATAGAATAGGATCGTAG 58.683 42.308 1.16 0.00 28.27 3.51
848 849 6.295123 GCCCAACTTCATAGAATAGGATCGTA 60.295 42.308 0.00 0.00 28.27 3.43
849 850 5.511545 GCCCAACTTCATAGAATAGGATCGT 60.512 44.000 0.00 0.00 28.27 3.73
850 851 4.932200 GCCCAACTTCATAGAATAGGATCG 59.068 45.833 0.00 0.00 28.27 3.69
851 852 6.120507 AGCCCAACTTCATAGAATAGGATC 57.879 41.667 0.00 0.00 28.27 3.36
852 853 5.608437 TGAGCCCAACTTCATAGAATAGGAT 59.392 40.000 0.00 0.00 28.27 3.24
853 854 4.968719 TGAGCCCAACTTCATAGAATAGGA 59.031 41.667 0.00 0.00 0.00 2.94
854 855 5.296151 TGAGCCCAACTTCATAGAATAGG 57.704 43.478 0.00 0.00 0.00 2.57
855 856 6.610741 GTTGAGCCCAACTTCATAGAATAG 57.389 41.667 3.50 0.00 46.84 1.73
895 903 2.354729 CAGAAATCCACGCCCCCA 59.645 61.111 0.00 0.00 0.00 4.96
900 908 0.598065 ACTTTGGCAGAAATCCACGC 59.402 50.000 0.00 0.00 32.45 5.34
901 909 1.068333 CCACTTTGGCAGAAATCCACG 60.068 52.381 0.00 0.00 32.45 4.94
902 910 1.273327 CCCACTTTGGCAGAAATCCAC 59.727 52.381 0.00 0.00 35.79 4.02
905 913 1.546029 GGTCCCACTTTGGCAGAAATC 59.454 52.381 0.00 0.00 35.79 2.17
939 947 4.309950 GACGCACCGGTCCCAGTT 62.310 66.667 2.59 0.00 0.00 3.16
948 956 4.778415 CTCCTCCACGACGCACCG 62.778 72.222 0.00 0.00 0.00 4.94
956 964 1.472376 GGAGAAATCAGCTCCTCCACG 60.472 57.143 0.00 0.00 46.70 4.94
1342 1350 1.745087 GTGAGAGAGAGTCCTGCAGAG 59.255 57.143 17.39 5.49 0.00 3.35
1435 1443 7.676004 TCTACAGAATGACAGAAACATGGTAA 58.324 34.615 0.00 0.00 39.69 2.85
1436 1444 7.239763 TCTACAGAATGACAGAAACATGGTA 57.760 36.000 0.00 0.00 39.69 3.25
1529 1545 3.304257 CGCACAAGAGCAAATTCTCACTT 60.304 43.478 0.00 0.00 35.59 3.16
1551 1567 5.181748 CAGAAGCATAGCCAATATAGACCC 58.818 45.833 0.00 0.00 0.00 4.46
1563 1579 1.020437 GCCCTCAACAGAAGCATAGC 58.980 55.000 0.00 0.00 0.00 2.97
1583 1599 1.997606 GCAATGCCACTTGATCAAAGC 59.002 47.619 9.88 12.79 39.76 3.51
1612 1628 4.351192 GTGACAACAAACTTGTGGTGATC 58.649 43.478 7.35 0.00 45.03 2.92
1668 1697 1.753073 TCCCTAAGCAACTACTACGCC 59.247 52.381 0.00 0.00 0.00 5.68
1689 1718 4.409247 CCTTTTACATAGGACTGGGCTAGT 59.591 45.833 2.00 2.00 44.02 2.57
1810 1839 6.214191 TCTATCATTTCGCCATAGGAGATC 57.786 41.667 0.00 0.00 30.42 2.75
1861 1890 4.211374 GCATCACCAATTACAGGTATCGAC 59.789 45.833 0.00 0.00 37.23 4.20
2233 2262 0.650512 CACATGACATTCCGCGGTAC 59.349 55.000 27.15 13.17 0.00 3.34
3340 3369 2.564504 AGCACTCTAGTTCAGTGATGCA 59.435 45.455 12.90 0.00 43.54 3.96
3341 3370 3.244033 AGCACTCTAGTTCAGTGATGC 57.756 47.619 12.90 4.77 43.54 3.91
3342 3371 4.624882 GTGAAGCACTCTAGTTCAGTGATG 59.375 45.833 12.90 0.00 43.54 3.07
3343 3372 4.322349 GGTGAAGCACTCTAGTTCAGTGAT 60.322 45.833 12.90 4.85 43.54 3.06
3344 3373 3.005897 GGTGAAGCACTCTAGTTCAGTGA 59.994 47.826 12.90 0.00 43.54 3.41
3345 3374 3.006323 AGGTGAAGCACTCTAGTTCAGTG 59.994 47.826 5.84 5.84 43.66 3.66
3346 3375 3.235200 AGGTGAAGCACTCTAGTTCAGT 58.765 45.455 0.00 0.00 34.40 3.41
3435 3464 9.338622 AGCCAGGATGTTTAAAACTATATACAC 57.661 33.333 0.00 0.00 0.00 2.90
3514 3543 4.647399 GTCCAGAGCAGAGACTTATTAGGT 59.353 45.833 0.00 0.00 0.00 3.08
3574 3603 8.577048 AATGATCCTTGATTGCTAGAATATGG 57.423 34.615 0.00 0.00 0.00 2.74
4319 5142 6.426937 TCTCTCTTAAGTTGGTGTGCAAATAC 59.573 38.462 1.63 0.00 0.00 1.89
4519 5345 5.009631 AGCATACAATAACTGCCAGTTCAA 58.990 37.500 14.46 0.00 39.51 2.69
4528 5354 8.461222 TCAAATGGAAGAAGCATACAATAACTG 58.539 33.333 0.00 0.00 0.00 3.16
4557 5383 9.479549 AGAAGATTTTGTACCCAAATGATATGT 57.520 29.630 5.14 0.00 40.14 2.29
4566 5392 7.721842 TGAATACACAGAAGATTTTGTACCCAA 59.278 33.333 0.00 0.00 0.00 4.12
4572 5398 8.849168 TGAACATGAATACACAGAAGATTTTGT 58.151 29.630 0.00 0.00 0.00 2.83
4672 5498 4.219725 GGCCACCTTTTATAGCAACAAGAA 59.780 41.667 0.00 0.00 0.00 2.52
4745 5571 6.736110 TCATAATAGCGGTTAAACCCTAGT 57.264 37.500 0.00 0.00 33.75 2.57
4854 5680 8.646900 TGTTTTAGCAGGATAAGAAAAACCATT 58.353 29.630 0.00 0.00 36.48 3.16
4908 5734 1.805345 CTCCTGAACTGCTTGCTTCAG 59.195 52.381 14.02 14.02 42.08 3.02
4939 5765 4.693095 GGTTCTTGTGATTTCTCAGTCCTC 59.307 45.833 0.00 0.00 30.18 3.71
5053 5879 4.790790 ACCCCATCTCTTCCTGTAATCTTT 59.209 41.667 0.00 0.00 0.00 2.52
5416 6248 7.520119 TGATCTATGAACGAAACATACACAC 57.480 36.000 0.00 0.00 0.00 3.82
5429 6261 4.202398 TGCCAAGGGAGATGATCTATGAAC 60.202 45.833 0.00 0.00 0.00 3.18
5453 6285 4.124943 CCAGCCAGGCCTGCAGAT 62.125 66.667 28.39 10.92 0.00 2.90
5455 6287 4.355720 TTCCAGCCAGGCCTGCAG 62.356 66.667 28.39 18.22 37.29 4.41
5513 6345 3.157680 CCGTTCTGGGGGTTGTCT 58.842 61.111 0.00 0.00 0.00 3.41
5560 6392 1.580658 ACACCTGGATCCTATCTCCCA 59.419 52.381 14.23 0.00 31.32 4.37
5606 6438 1.375396 CGGATGCTGGGACGACAAA 60.375 57.895 0.00 0.00 0.00 2.83
5635 6467 9.209175 CTACTACTAAACTGAAACAAGATGCTT 57.791 33.333 0.00 0.00 0.00 3.91
5639 6471 9.425577 GCTTCTACTACTAAACTGAAACAAGAT 57.574 33.333 0.00 0.00 0.00 2.40
5642 6474 8.951787 TTGCTTCTACTACTAAACTGAAACAA 57.048 30.769 0.00 0.00 0.00 2.83
5645 6477 8.999431 CCATTTGCTTCTACTACTAAACTGAAA 58.001 33.333 0.00 0.00 0.00 2.69
5649 6481 8.324163 CAACCATTTGCTTCTACTACTAAACT 57.676 34.615 0.00 0.00 0.00 2.66
5672 6505 4.836736 ACCAACTACCAAGTAGAGTAGCAA 59.163 41.667 8.70 0.00 39.69 3.91
5680 6513 4.099113 GGCCTACTACCAACTACCAAGTAG 59.901 50.000 0.00 0.23 41.43 2.57
5681 6514 4.026052 GGCCTACTACCAACTACCAAGTA 58.974 47.826 0.00 0.00 33.75 2.24
5682 6515 2.836372 GGCCTACTACCAACTACCAAGT 59.164 50.000 0.00 0.00 37.65 3.16
5683 6516 2.169978 GGGCCTACTACCAACTACCAAG 59.830 54.545 0.84 0.00 0.00 3.61
5684 6517 2.190538 GGGCCTACTACCAACTACCAA 58.809 52.381 0.84 0.00 0.00 3.67
5692 6525 1.910580 GCAGCAAGGGCCTACTACCA 61.911 60.000 6.41 0.00 42.56 3.25
5694 6527 4.542075 GCAGCAAGGGCCTACTAC 57.458 61.111 6.41 0.00 42.56 2.73
5751 6584 5.336610 GGTTACAGGAAGACTAGTTCTGGAC 60.337 48.000 15.71 13.56 33.46 4.02
5940 6796 2.058595 GGCACTCTTCGCTCCCCTA 61.059 63.158 0.00 0.00 0.00 3.53
5942 6798 4.821589 CGGCACTCTTCGCTCCCC 62.822 72.222 0.00 0.00 0.00 4.81
5943 6799 2.962697 GATCGGCACTCTTCGCTCCC 62.963 65.000 0.00 0.00 0.00 4.30
5944 6800 1.590259 GATCGGCACTCTTCGCTCC 60.590 63.158 0.00 0.00 0.00 4.70
5945 6801 1.941734 CGATCGGCACTCTTCGCTC 60.942 63.158 7.38 0.00 0.00 5.03
5946 6802 2.103143 CGATCGGCACTCTTCGCT 59.897 61.111 7.38 0.00 0.00 4.93
5947 6803 2.685387 ATCCGATCGGCACTCTTCGC 62.685 60.000 29.62 0.00 34.68 4.70
5948 6804 0.936764 CATCCGATCGGCACTCTTCG 60.937 60.000 29.62 6.89 34.68 3.79
5949 6805 0.385751 TCATCCGATCGGCACTCTTC 59.614 55.000 29.62 0.00 34.68 2.87
5950 6806 0.103208 GTCATCCGATCGGCACTCTT 59.897 55.000 29.62 6.51 34.68 2.85
5951 6807 1.037579 TGTCATCCGATCGGCACTCT 61.038 55.000 29.62 8.13 34.68 3.24
5952 6808 0.596083 CTGTCATCCGATCGGCACTC 60.596 60.000 29.62 18.40 34.68 3.51
5953 6809 1.439228 CTGTCATCCGATCGGCACT 59.561 57.895 29.62 13.29 34.68 4.40
5954 6810 1.592669 CCTGTCATCCGATCGGCAC 60.593 63.158 29.62 23.11 34.68 5.01
5955 6811 2.796193 CCCTGTCATCCGATCGGCA 61.796 63.158 29.62 19.38 34.68 5.69
5956 6812 2.029666 CCCTGTCATCCGATCGGC 59.970 66.667 29.62 15.61 34.68 5.54
5957 6813 1.364171 GTCCCTGTCATCCGATCGG 59.636 63.158 28.62 28.62 0.00 4.18
5958 6814 0.031314 CTGTCCCTGTCATCCGATCG 59.969 60.000 8.51 8.51 0.00 3.69
5959 6815 0.249657 GCTGTCCCTGTCATCCGATC 60.250 60.000 0.00 0.00 0.00 3.69
6045 6901 0.248702 GGCGGAAGTCTAGCGAGAAG 60.249 60.000 0.00 0.00 31.96 2.85
6049 6905 3.515286 CGGGCGGAAGTCTAGCGA 61.515 66.667 0.00 0.00 34.89 4.93
6050 6906 4.570663 CCGGGCGGAAGTCTAGCG 62.571 72.222 0.00 0.00 37.50 4.26
6051 6907 3.145551 TCCGGGCGGAAGTCTAGC 61.146 66.667 0.00 0.00 42.05 3.42
6079 6935 4.767255 CAGGTCCCAGCCGCTGTC 62.767 72.222 18.98 8.88 0.00 3.51
6087 6943 4.087892 CTGTCGCCCAGGTCCCAG 62.088 72.222 0.00 0.00 37.54 4.45
6113 6969 4.083862 GTGGTGGGAGGAGGACGC 62.084 72.222 0.00 0.00 0.00 5.19
6115 6971 4.083862 GCGTGGTGGGAGGAGGAC 62.084 72.222 0.00 0.00 0.00 3.85
6146 7612 1.001406 CAGGAAGGGTAGCCGATGATC 59.999 57.143 5.06 0.69 0.00 2.92
6213 7679 1.961277 GTGGTGAGGAACTGGTGCG 60.961 63.158 0.00 0.00 41.55 5.34
6294 7775 0.530288 TGCCGATCTCAATGACACGA 59.470 50.000 0.00 0.00 32.46 4.35
6306 7787 0.233332 GCTCAGCGTTATTGCCGATC 59.767 55.000 0.00 0.00 34.65 3.69
6358 7839 3.762247 GCACCCCTACGTACGCCA 61.762 66.667 16.72 2.17 0.00 5.69
6421 7910 2.512286 ATGCATCCGCCAGTCACG 60.512 61.111 0.00 0.00 37.32 4.35
6455 7944 6.146347 GCGAAAAATACAATTAAACAAGGCCA 59.854 34.615 5.01 0.00 0.00 5.36
6477 7966 6.207928 CCATTTGTGCAATAAGAATATGCGA 58.792 36.000 0.00 0.00 0.00 5.10
6480 7969 7.053316 TCCCCATTTGTGCAATAAGAATATG 57.947 36.000 0.00 0.00 0.00 1.78
6496 7985 2.111613 TCAACCAGGACAATCCCCATTT 59.888 45.455 0.00 0.00 37.19 2.32
6509 7998 0.036388 ACGGCACTACATCAACCAGG 60.036 55.000 0.00 0.00 0.00 4.45
6518 8007 3.746045 AGAGAAAGAAACGGCACTACA 57.254 42.857 0.00 0.00 0.00 2.74
6526 8015 6.017934 TGGATGAAGAACAAGAGAAAGAAACG 60.018 38.462 0.00 0.00 0.00 3.60
6534 8023 5.065914 CCTGTTTGGATGAAGAACAAGAGA 58.934 41.667 0.00 0.00 38.35 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.