Multiple sequence alignment - TraesCS2A01G358600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G358600 chr2A 100.000 2869 0 0 1 2869 602719756 602716888 0.000000e+00 5299.0
1 TraesCS2A01G358600 chr2A 92.081 985 61 10 892 1865 602766924 602765946 0.000000e+00 1371.0
2 TraesCS2A01G358600 chr2A 90.982 998 78 7 1881 2869 710466448 710465454 0.000000e+00 1334.0
3 TraesCS2A01G358600 chr2A 90.536 951 63 15 889 1818 602688975 602688031 0.000000e+00 1232.0
4 TraesCS2A01G358600 chr2A 92.459 305 19 4 327 631 602689276 602688976 1.580000e-117 433.0
5 TraesCS2A01G358600 chr2A 92.771 249 17 1 643 891 362286765 362286518 2.720000e-95 359.0
6 TraesCS2A01G358600 chr2A 91.935 248 20 0 643 890 48493866 48493619 5.880000e-92 348.0
7 TraesCS2A01G358600 chr2A 89.811 265 22 2 629 889 5765066 5765329 4.580000e-88 335.0
8 TraesCS2A01G358600 chr2A 92.958 213 14 1 1882 2093 634872645 634872857 2.780000e-80 309.0
9 TraesCS2A01G358600 chr2A 96.491 57 2 0 10 66 672440993 672441049 8.460000e-16 95.3
10 TraesCS2A01G358600 chr2A 94.231 52 3 0 17 68 744428579 744428528 2.370000e-11 80.5
11 TraesCS2A01G358600 chr2A 97.222 36 1 0 31 66 745067662 745067627 8.580000e-06 62.1
12 TraesCS2A01G358600 chr3D 95.792 998 31 5 1881 2869 571864719 571865714 0.000000e+00 1600.0
13 TraesCS2A01G358600 chr3D 79.221 308 39 19 128 427 335630823 335631113 1.050000e-44 191.0
14 TraesCS2A01G358600 chr1B 95.468 993 38 4 1883 2869 646542147 646543138 0.000000e+00 1578.0
15 TraesCS2A01G358600 chr1B 90.000 50 5 0 17 66 656124093 656124142 6.640000e-07 65.8
16 TraesCS2A01G358600 chr3B 95.100 1000 40 6 1876 2869 771777436 771778432 0.000000e+00 1567.0
17 TraesCS2A01G358600 chr7B 94.378 996 47 6 1880 2869 532485314 532486306 0.000000e+00 1520.0
18 TraesCS2A01G358600 chr7B 83.010 618 102 1 1072 1689 699524618 699524004 8.980000e-155 556.0
19 TraesCS2A01G358600 chr7B 82.159 667 88 17 1072 1726 699562559 699561912 6.990000e-151 544.0
20 TraesCS2A01G358600 chr7B 79.851 670 97 22 1107 1766 699354569 699355210 3.370000e-124 455.0
21 TraesCS2A01G358600 chr7B 84.433 379 53 3 1072 1450 699361925 699362297 4.520000e-98 368.0
22 TraesCS2A01G358600 chr7B 82.748 313 44 6 1417 1726 699530697 699530392 1.310000e-68 270.0
23 TraesCS2A01G358600 chr7B 80.970 268 30 16 127 388 263146274 263146526 2.920000e-45 193.0
24 TraesCS2A01G358600 chr7B 92.000 50 3 1 26 74 92964582 92964533 5.130000e-08 69.4
25 TraesCS2A01G358600 chr2D 91.826 942 50 10 966 1888 459344131 459343198 0.000000e+00 1288.0
26 TraesCS2A01G358600 chr4A 94.892 744 31 4 1881 2619 659210650 659209909 0.000000e+00 1157.0
27 TraesCS2A01G358600 chr4A 93.802 242 14 1 2629 2869 659188813 659188572 2.100000e-96 363.0
28 TraesCS2A01G358600 chr4A 90.196 51 5 0 16 66 5747569 5747519 1.840000e-07 67.6
29 TraesCS2A01G358600 chr2B 89.955 896 60 15 922 1805 540813879 540813002 0.000000e+00 1129.0
30 TraesCS2A01G358600 chr2B 91.985 262 12 4 632 889 207100110 207099854 2.720000e-95 359.0
31 TraesCS2A01G358600 chr4B 93.575 358 16 4 1882 2234 474488278 474487923 7.040000e-146 527.0
32 TraesCS2A01G358600 chr7A 82.490 514 72 10 1101 1608 700685332 700684831 4.390000e-118 435.0
33 TraesCS2A01G358600 chr7A 92.369 249 14 2 631 874 518755123 518755371 1.640000e-92 350.0
34 TraesCS2A01G358600 chr3A 93.750 288 16 2 1878 2164 438781929 438782215 5.680000e-117 431.0
35 TraesCS2A01G358600 chr3A 91.667 264 17 2 630 889 339745416 339745678 7.560000e-96 361.0
36 TraesCS2A01G358600 chr3A 95.556 45 2 0 17 61 19562606 19562562 3.970000e-09 73.1
37 TraesCS2A01G358600 chr6A 94.800 250 13 0 643 892 326629730 326629979 9.640000e-105 390.0
38 TraesCS2A01G358600 chr6A 93.117 247 16 1 643 889 399204370 399204615 7.560000e-96 361.0
39 TraesCS2A01G358600 chr1A 91.386 267 18 2 630 892 147450934 147451199 7.560000e-96 361.0
40 TraesCS2A01G358600 chr5B 79.699 266 40 8 131 392 576922798 576923053 2.270000e-41 180.0
41 TraesCS2A01G358600 chr5B 89.655 58 5 1 16 72 295650165 295650108 3.970000e-09 73.1
42 TraesCS2A01G358600 chr7D 80.242 248 29 12 1528 1761 610797045 610796804 4.920000e-38 169.0
43 TraesCS2A01G358600 chr7D 73.846 260 61 7 2478 2733 79616250 79616506 2.350000e-16 97.1
44 TraesCS2A01G358600 chr5D 97.368 38 1 0 31 68 494190201 494190164 6.640000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G358600 chr2A 602716888 602719756 2868 True 5299.0 5299 100.0000 1 2869 1 chr2A.!!$R3 2868
1 TraesCS2A01G358600 chr2A 602765946 602766924 978 True 1371.0 1371 92.0810 892 1865 1 chr2A.!!$R4 973
2 TraesCS2A01G358600 chr2A 710465454 710466448 994 True 1334.0 1334 90.9820 1881 2869 1 chr2A.!!$R5 988
3 TraesCS2A01G358600 chr2A 602688031 602689276 1245 True 832.5 1232 91.4975 327 1818 2 chr2A.!!$R8 1491
4 TraesCS2A01G358600 chr3D 571864719 571865714 995 False 1600.0 1600 95.7920 1881 2869 1 chr3D.!!$F2 988
5 TraesCS2A01G358600 chr1B 646542147 646543138 991 False 1578.0 1578 95.4680 1883 2869 1 chr1B.!!$F1 986
6 TraesCS2A01G358600 chr3B 771777436 771778432 996 False 1567.0 1567 95.1000 1876 2869 1 chr3B.!!$F1 993
7 TraesCS2A01G358600 chr7B 532485314 532486306 992 False 1520.0 1520 94.3780 1880 2869 1 chr7B.!!$F2 989
8 TraesCS2A01G358600 chr7B 699524004 699524618 614 True 556.0 556 83.0100 1072 1689 1 chr7B.!!$R2 617
9 TraesCS2A01G358600 chr7B 699561912 699562559 647 True 544.0 544 82.1590 1072 1726 1 chr7B.!!$R4 654
10 TraesCS2A01G358600 chr7B 699354569 699355210 641 False 455.0 455 79.8510 1107 1766 1 chr7B.!!$F3 659
11 TraesCS2A01G358600 chr2D 459343198 459344131 933 True 1288.0 1288 91.8260 966 1888 1 chr2D.!!$R1 922
12 TraesCS2A01G358600 chr4A 659209909 659210650 741 True 1157.0 1157 94.8920 1881 2619 1 chr4A.!!$R3 738
13 TraesCS2A01G358600 chr2B 540813002 540813879 877 True 1129.0 1129 89.9550 922 1805 1 chr2B.!!$R2 883
14 TraesCS2A01G358600 chr7A 700684831 700685332 501 True 435.0 435 82.4900 1101 1608 1 chr7A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 604 0.162933 CCACATCGTACAACGTGCAC 59.837 55.0 6.82 6.82 43.14 4.57 F
1012 1014 0.109597 GAAGCCCACAAATCGCACAG 60.110 55.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1708 0.243907 CTTCAGCGAAGGGAACTCGA 59.756 55.0 9.54 0.0 42.68 4.04 R
2417 2505 0.473755 AGTCTTGCATGTGGTGGACA 59.526 50.0 0.00 0.0 39.53 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.512286 CGTGGATCGTGCATGCCT 60.512 61.111 16.68 0.00 34.52 4.75
27 28 2.816360 CGTGGATCGTGCATGCCTG 61.816 63.158 16.68 7.65 34.52 4.85
28 29 1.450134 GTGGATCGTGCATGCCTGA 60.450 57.895 16.68 13.39 0.00 3.86
29 30 1.450134 TGGATCGTGCATGCCTGAC 60.450 57.895 16.68 5.85 0.00 3.51
30 31 2.528743 GGATCGTGCATGCCTGACG 61.529 63.158 19.67 19.67 34.38 4.35
31 32 3.160557 GATCGTGCATGCCTGACGC 62.161 63.158 20.61 7.36 38.31 5.19
40 41 2.904866 GCCTGACGCAAACCACCA 60.905 61.111 0.00 0.00 37.47 4.17
41 42 2.908073 GCCTGACGCAAACCACCAG 61.908 63.158 0.00 0.00 37.47 4.00
42 43 1.525995 CCTGACGCAAACCACCAGT 60.526 57.895 0.00 0.00 0.00 4.00
43 44 1.507141 CCTGACGCAAACCACCAGTC 61.507 60.000 0.00 0.00 0.00 3.51
44 45 1.831389 CTGACGCAAACCACCAGTCG 61.831 60.000 0.00 0.00 34.82 4.18
45 46 1.593209 GACGCAAACCACCAGTCGA 60.593 57.895 0.00 0.00 0.00 4.20
46 47 1.828331 GACGCAAACCACCAGTCGAC 61.828 60.000 7.70 7.70 0.00 4.20
47 48 1.594293 CGCAAACCACCAGTCGACT 60.594 57.895 13.58 13.58 0.00 4.18
48 49 1.831389 CGCAAACCACCAGTCGACTG 61.831 60.000 33.87 33.87 43.40 3.51
64 65 3.099362 CGACTGGTCGTTAGATTTCTCG 58.901 50.000 14.05 0.00 46.99 4.04
65 66 3.425892 CGACTGGTCGTTAGATTTCTCGT 60.426 47.826 14.05 0.00 46.99 4.18
66 67 4.201753 CGACTGGTCGTTAGATTTCTCGTA 60.202 45.833 14.05 0.00 46.99 3.43
67 68 5.503683 CGACTGGTCGTTAGATTTCTCGTAT 60.504 44.000 14.05 0.00 46.99 3.06
68 69 5.579718 ACTGGTCGTTAGATTTCTCGTATG 58.420 41.667 0.00 0.00 0.00 2.39
69 70 5.356190 ACTGGTCGTTAGATTTCTCGTATGA 59.644 40.000 0.00 0.00 0.00 2.15
70 71 6.127814 ACTGGTCGTTAGATTTCTCGTATGAA 60.128 38.462 0.00 0.00 0.00 2.57
71 72 6.623486 TGGTCGTTAGATTTCTCGTATGAAA 58.377 36.000 0.00 0.00 39.79 2.69
72 73 7.092079 TGGTCGTTAGATTTCTCGTATGAAAA 58.908 34.615 0.00 0.00 39.08 2.29
73 74 7.599621 TGGTCGTTAGATTTCTCGTATGAAAAA 59.400 33.333 0.00 0.00 39.08 1.94
131 132 4.664688 AGGGACTTTTCATGGTTCTCAT 57.335 40.909 0.00 0.00 27.25 2.90
132 133 4.338879 AGGGACTTTTCATGGTTCTCATG 58.661 43.478 0.00 0.00 46.17 3.07
133 134 4.202609 AGGGACTTTTCATGGTTCTCATGT 60.203 41.667 5.98 0.00 45.40 3.21
134 135 6.269370 AGGGACTTTTCATGGTTCTCATGTG 61.269 44.000 5.98 0.00 45.40 3.21
135 136 8.617691 AGGGACTTTTCATGGTTCTCATGTGT 62.618 42.308 5.98 2.60 45.40 3.72
136 137 9.330578 AGGGACTTTTCATGGTTCTCATGTGTA 62.331 40.741 5.98 0.00 45.40 2.90
150 151 2.505650 TGTGTAACACCCCATCCATG 57.494 50.000 0.00 0.00 45.67 3.66
151 152 1.005332 TGTGTAACACCCCATCCATGG 59.995 52.381 4.97 4.97 45.67 3.66
159 160 4.247781 CCATCCATGGGCTGTCAC 57.752 61.111 13.02 0.00 44.31 3.67
160 161 1.454479 CCATCCATGGGCTGTCACC 60.454 63.158 13.02 0.00 44.31 4.02
170 171 2.510768 GGCTGTCACCCTATACTTCG 57.489 55.000 0.00 0.00 0.00 3.79
171 172 1.755380 GGCTGTCACCCTATACTTCGT 59.245 52.381 0.00 0.00 0.00 3.85
172 173 2.954318 GGCTGTCACCCTATACTTCGTA 59.046 50.000 0.00 0.00 0.00 3.43
173 174 3.382546 GGCTGTCACCCTATACTTCGTAA 59.617 47.826 0.00 0.00 0.00 3.18
174 175 4.357996 GCTGTCACCCTATACTTCGTAAC 58.642 47.826 0.00 0.00 0.00 2.50
175 176 4.097589 GCTGTCACCCTATACTTCGTAACT 59.902 45.833 0.00 0.00 0.00 2.24
176 177 5.571784 TGTCACCCTATACTTCGTAACTG 57.428 43.478 0.00 0.00 0.00 3.16
177 178 4.400251 TGTCACCCTATACTTCGTAACTGG 59.600 45.833 0.00 0.00 0.00 4.00
178 179 3.956199 TCACCCTATACTTCGTAACTGGG 59.044 47.826 0.00 0.00 34.49 4.45
179 180 2.697229 ACCCTATACTTCGTAACTGGGC 59.303 50.000 0.00 0.00 32.90 5.36
180 181 2.036862 CCCTATACTTCGTAACTGGGCC 59.963 54.545 0.00 0.00 0.00 5.80
181 182 2.963782 CCTATACTTCGTAACTGGGCCT 59.036 50.000 4.53 0.00 0.00 5.19
182 183 2.981859 ATACTTCGTAACTGGGCCTG 57.018 50.000 9.11 9.11 0.00 4.85
183 184 0.899720 TACTTCGTAACTGGGCCTGG 59.100 55.000 15.36 5.47 0.00 4.45
184 185 1.078426 CTTCGTAACTGGGCCTGGG 60.078 63.158 15.36 2.88 0.00 4.45
185 186 3.262448 TTCGTAACTGGGCCTGGGC 62.262 63.158 12.58 12.58 41.06 5.36
186 187 3.717294 CGTAACTGGGCCTGGGCT 61.717 66.667 20.47 2.35 41.60 5.19
187 188 2.363975 CGTAACTGGGCCTGGGCTA 61.364 63.158 20.47 13.59 41.60 3.93
188 189 1.223763 GTAACTGGGCCTGGGCTAC 59.776 63.158 20.47 10.60 41.60 3.58
189 190 1.229690 TAACTGGGCCTGGGCTACA 60.230 57.895 20.47 9.51 41.60 2.74
190 191 0.842905 TAACTGGGCCTGGGCTACAA 60.843 55.000 20.47 3.01 41.60 2.41
191 192 2.142292 AACTGGGCCTGGGCTACAAG 62.142 60.000 20.47 14.15 41.60 3.16
192 193 2.204074 TGGGCCTGGGCTACAAGA 60.204 61.111 20.47 0.00 41.60 3.02
193 194 1.619363 TGGGCCTGGGCTACAAGAT 60.619 57.895 20.47 0.00 41.60 2.40
194 195 1.152881 GGGCCTGGGCTACAAGATG 60.153 63.158 20.47 0.00 41.60 2.90
195 196 1.152881 GGCCTGGGCTACAAGATGG 60.153 63.158 13.80 0.00 41.60 3.51
196 197 1.152881 GCCTGGGCTACAAGATGGG 60.153 63.158 4.12 0.00 38.26 4.00
197 198 1.152881 CCTGGGCTACAAGATGGGC 60.153 63.158 0.00 0.00 0.00 5.36
199 200 2.203209 GGGCTACAAGATGGGCCG 60.203 66.667 0.00 0.00 45.00 6.13
200 201 2.590092 GGCTACAAGATGGGCCGT 59.410 61.111 0.00 0.00 32.69 5.68
201 202 1.523938 GGCTACAAGATGGGCCGTC 60.524 63.158 18.32 18.32 32.69 4.79
202 203 1.523938 GCTACAAGATGGGCCGTCC 60.524 63.158 22.06 4.66 0.00 4.79
210 211 3.727258 TGGGCCGTCCATTGGAGG 61.727 66.667 16.79 16.79 41.46 4.30
211 212 3.728373 GGGCCGTCCATTGGAGGT 61.728 66.667 20.80 0.00 36.02 3.85
212 213 2.124695 GGCCGTCCATTGGAGGTC 60.125 66.667 20.80 14.87 36.02 3.85
213 214 2.511600 GCCGTCCATTGGAGGTCG 60.512 66.667 20.80 14.12 39.41 4.79
215 216 2.978824 CGTCCATTGGAGGTCGGT 59.021 61.111 15.73 0.00 36.72 4.69
216 217 1.295423 CGTCCATTGGAGGTCGGTT 59.705 57.895 15.73 0.00 36.72 4.44
217 218 0.321298 CGTCCATTGGAGGTCGGTTT 60.321 55.000 15.73 0.00 36.72 3.27
218 219 1.450025 GTCCATTGGAGGTCGGTTTC 58.550 55.000 5.39 0.00 29.39 2.78
219 220 0.326927 TCCATTGGAGGTCGGTTTCC 59.673 55.000 0.00 0.00 0.00 3.13
220 221 0.679960 CCATTGGAGGTCGGTTTCCC 60.680 60.000 0.00 0.00 32.29 3.97
221 222 0.679960 CATTGGAGGTCGGTTTCCCC 60.680 60.000 0.00 0.00 32.29 4.81
222 223 1.859841 ATTGGAGGTCGGTTTCCCCC 61.860 60.000 0.00 0.00 32.29 5.40
223 224 2.931649 GGAGGTCGGTTTCCCCCA 60.932 66.667 0.00 0.00 0.00 4.96
224 225 2.306384 GGAGGTCGGTTTCCCCCAT 61.306 63.158 0.00 0.00 0.00 4.00
225 226 0.984432 GGAGGTCGGTTTCCCCCATA 60.984 60.000 0.00 0.00 0.00 2.74
226 227 0.179702 GAGGTCGGTTTCCCCCATAC 59.820 60.000 0.00 0.00 0.00 2.39
227 228 1.153309 GGTCGGTTTCCCCCATACG 60.153 63.158 0.00 0.00 0.00 3.06
228 229 1.153309 GTCGGTTTCCCCCATACGG 60.153 63.158 0.00 0.00 0.00 4.02
229 230 2.515290 CGGTTTCCCCCATACGGC 60.515 66.667 0.00 0.00 0.00 5.68
230 231 2.678470 GGTTTCCCCCATACGGCA 59.322 61.111 0.00 0.00 0.00 5.69
231 232 1.751544 GGTTTCCCCCATACGGCAC 60.752 63.158 0.00 0.00 0.00 5.01
244 245 3.655481 GGCACGGGCTACATATGC 58.345 61.111 10.74 0.00 40.87 3.14
245 246 1.227823 GGCACGGGCTACATATGCA 60.228 57.895 10.74 0.00 40.87 3.96
246 247 0.817634 GGCACGGGCTACATATGCAA 60.818 55.000 10.74 0.00 40.87 4.08
247 248 1.238439 GCACGGGCTACATATGCAAT 58.762 50.000 0.00 0.00 36.30 3.56
248 249 1.197721 GCACGGGCTACATATGCAATC 59.802 52.381 0.00 0.00 36.30 2.67
249 250 1.460743 CACGGGCTACATATGCAATCG 59.539 52.381 1.58 3.80 0.00 3.34
250 251 1.078709 CGGGCTACATATGCAATCGG 58.921 55.000 1.58 0.00 0.00 4.18
251 252 1.453155 GGGCTACATATGCAATCGGG 58.547 55.000 1.58 0.00 0.00 5.14
252 253 1.003118 GGGCTACATATGCAATCGGGA 59.997 52.381 1.58 0.00 0.00 5.14
253 254 2.350522 GGCTACATATGCAATCGGGAG 58.649 52.381 1.58 0.00 0.00 4.30
254 255 2.028112 GGCTACATATGCAATCGGGAGA 60.028 50.000 1.58 0.00 46.90 3.71
255 256 3.257393 GCTACATATGCAATCGGGAGAG 58.743 50.000 1.58 0.00 45.48 3.20
256 257 2.175878 ACATATGCAATCGGGAGAGC 57.824 50.000 1.58 0.00 45.48 4.09
257 258 1.417517 ACATATGCAATCGGGAGAGCA 59.582 47.619 1.58 0.00 45.48 4.26
260 261 2.469274 ATGCAATCGGGAGAGCATAG 57.531 50.000 8.34 0.00 45.38 2.23
261 262 0.250038 TGCAATCGGGAGAGCATAGC 60.250 55.000 0.00 0.00 45.48 2.97
262 263 1.287730 GCAATCGGGAGAGCATAGCG 61.288 60.000 0.00 0.00 45.48 4.26
263 264 0.668706 CAATCGGGAGAGCATAGCGG 60.669 60.000 0.00 0.00 45.48 5.52
264 265 0.827925 AATCGGGAGAGCATAGCGGA 60.828 55.000 0.00 0.00 45.48 5.54
265 266 1.247419 ATCGGGAGAGCATAGCGGAG 61.247 60.000 0.00 0.00 45.48 4.63
266 267 2.925262 CGGGAGAGCATAGCGGAGG 61.925 68.421 0.00 0.00 0.00 4.30
267 268 2.578714 GGGAGAGCATAGCGGAGGG 61.579 68.421 0.00 0.00 0.00 4.30
268 269 2.341911 GAGAGCATAGCGGAGGGC 59.658 66.667 0.00 0.00 44.05 5.19
277 278 3.827634 GCGGAGGGCATCGAAAAT 58.172 55.556 0.00 0.00 42.87 1.82
278 279 1.356624 GCGGAGGGCATCGAAAATG 59.643 57.895 0.00 0.00 42.87 2.32
279 280 1.095228 GCGGAGGGCATCGAAAATGA 61.095 55.000 0.00 0.00 42.87 2.57
280 281 1.378531 CGGAGGGCATCGAAAATGAA 58.621 50.000 0.00 0.00 0.00 2.57
281 282 1.064060 CGGAGGGCATCGAAAATGAAC 59.936 52.381 0.00 0.00 0.00 3.18
282 283 2.369394 GGAGGGCATCGAAAATGAACT 58.631 47.619 0.00 0.00 0.00 3.01
283 284 2.098117 GGAGGGCATCGAAAATGAACTG 59.902 50.000 0.00 0.00 0.00 3.16
284 285 3.009723 GAGGGCATCGAAAATGAACTGA 58.990 45.455 0.00 0.00 0.00 3.41
285 286 3.420893 AGGGCATCGAAAATGAACTGAA 58.579 40.909 0.00 0.00 0.00 3.02
286 287 4.019174 AGGGCATCGAAAATGAACTGAAT 58.981 39.130 0.00 0.00 0.00 2.57
287 288 4.096984 AGGGCATCGAAAATGAACTGAATC 59.903 41.667 0.00 0.00 0.00 2.52
288 289 4.031028 GGCATCGAAAATGAACTGAATCG 58.969 43.478 0.00 0.00 0.00 3.34
289 290 4.437390 GGCATCGAAAATGAACTGAATCGT 60.437 41.667 0.00 0.00 0.00 3.73
290 291 4.725754 GCATCGAAAATGAACTGAATCGTC 59.274 41.667 0.00 0.00 0.00 4.20
291 292 4.921470 TCGAAAATGAACTGAATCGTCC 57.079 40.909 0.00 0.00 0.00 4.79
292 293 4.311606 TCGAAAATGAACTGAATCGTCCA 58.688 39.130 0.00 0.00 0.00 4.02
293 294 4.151689 TCGAAAATGAACTGAATCGTCCAC 59.848 41.667 0.00 0.00 0.00 4.02
294 295 4.669197 CGAAAATGAACTGAATCGTCCACC 60.669 45.833 0.00 0.00 0.00 4.61
295 296 3.417069 AATGAACTGAATCGTCCACCA 57.583 42.857 0.00 0.00 0.00 4.17
296 297 2.920724 TGAACTGAATCGTCCACCAA 57.079 45.000 0.00 0.00 0.00 3.67
297 298 2.489971 TGAACTGAATCGTCCACCAAC 58.510 47.619 0.00 0.00 0.00 3.77
298 299 2.104111 TGAACTGAATCGTCCACCAACT 59.896 45.455 0.00 0.00 0.00 3.16
299 300 2.930826 ACTGAATCGTCCACCAACTT 57.069 45.000 0.00 0.00 0.00 2.66
300 301 2.767505 ACTGAATCGTCCACCAACTTC 58.232 47.619 0.00 0.00 0.00 3.01
301 302 2.368875 ACTGAATCGTCCACCAACTTCT 59.631 45.455 0.00 0.00 0.00 2.85
302 303 2.996621 CTGAATCGTCCACCAACTTCTC 59.003 50.000 0.00 0.00 0.00 2.87
303 304 2.367241 TGAATCGTCCACCAACTTCTCA 59.633 45.455 0.00 0.00 0.00 3.27
304 305 3.007940 TGAATCGTCCACCAACTTCTCAT 59.992 43.478 0.00 0.00 0.00 2.90
305 306 2.743636 TCGTCCACCAACTTCTCATC 57.256 50.000 0.00 0.00 0.00 2.92
306 307 2.248248 TCGTCCACCAACTTCTCATCT 58.752 47.619 0.00 0.00 0.00 2.90
307 308 2.231478 TCGTCCACCAACTTCTCATCTC 59.769 50.000 0.00 0.00 0.00 2.75
308 309 2.675317 CGTCCACCAACTTCTCATCTCC 60.675 54.545 0.00 0.00 0.00 3.71
309 310 2.569404 GTCCACCAACTTCTCATCTCCT 59.431 50.000 0.00 0.00 0.00 3.69
310 311 3.008485 GTCCACCAACTTCTCATCTCCTT 59.992 47.826 0.00 0.00 0.00 3.36
311 312 3.261897 TCCACCAACTTCTCATCTCCTTC 59.738 47.826 0.00 0.00 0.00 3.46
312 313 3.262915 CCACCAACTTCTCATCTCCTTCT 59.737 47.826 0.00 0.00 0.00 2.85
313 314 4.502962 CACCAACTTCTCATCTCCTTCTC 58.497 47.826 0.00 0.00 0.00 2.87
314 315 3.517500 ACCAACTTCTCATCTCCTTCTCC 59.482 47.826 0.00 0.00 0.00 3.71
315 316 3.517100 CCAACTTCTCATCTCCTTCTCCA 59.483 47.826 0.00 0.00 0.00 3.86
316 317 4.019860 CCAACTTCTCATCTCCTTCTCCAA 60.020 45.833 0.00 0.00 0.00 3.53
317 318 5.339035 CCAACTTCTCATCTCCTTCTCCAAT 60.339 44.000 0.00 0.00 0.00 3.16
318 319 6.179040 CAACTTCTCATCTCCTTCTCCAATT 58.821 40.000 0.00 0.00 0.00 2.32
319 320 5.988287 ACTTCTCATCTCCTTCTCCAATTC 58.012 41.667 0.00 0.00 0.00 2.17
320 321 5.104569 ACTTCTCATCTCCTTCTCCAATTCC 60.105 44.000 0.00 0.00 0.00 3.01
321 322 4.629122 TCTCATCTCCTTCTCCAATTCCT 58.371 43.478 0.00 0.00 0.00 3.36
322 323 4.653341 TCTCATCTCCTTCTCCAATTCCTC 59.347 45.833 0.00 0.00 0.00 3.71
323 324 4.365368 TCATCTCCTTCTCCAATTCCTCA 58.635 43.478 0.00 0.00 0.00 3.86
324 325 4.973856 TCATCTCCTTCTCCAATTCCTCAT 59.026 41.667 0.00 0.00 0.00 2.90
325 326 5.071519 TCATCTCCTTCTCCAATTCCTCATC 59.928 44.000 0.00 0.00 0.00 2.92
335 336 2.441001 CAATTCCTCATCCCCTGCTACT 59.559 50.000 0.00 0.00 0.00 2.57
336 337 1.794714 TTCCTCATCCCCTGCTACTC 58.205 55.000 0.00 0.00 0.00 2.59
377 378 2.092753 TGCTGATTTCTCACCCCAGATC 60.093 50.000 0.00 0.00 0.00 2.75
499 500 1.129251 CATCATCACGTTGCAGACACC 59.871 52.381 0.00 0.00 0.00 4.16
503 504 0.176910 TCACGTTGCAGACACCAGAA 59.823 50.000 0.00 0.00 0.00 3.02
515 516 0.178992 CACCAGAACTTGAGGCCCAA 60.179 55.000 0.00 2.36 0.00 4.12
518 519 1.272092 CCAGAACTTGAGGCCCAATCA 60.272 52.381 0.00 0.00 33.68 2.57
539 540 3.441496 AACTGTTGCAACCAAGTCATG 57.559 42.857 26.14 8.75 0.00 3.07
540 541 2.378038 ACTGTTGCAACCAAGTCATGT 58.622 42.857 26.14 9.31 0.00 3.21
542 543 2.358582 CTGTTGCAACCAAGTCATGTCA 59.641 45.455 26.14 2.55 0.00 3.58
570 571 0.819259 CGCCCCCATACCAGATTGTG 60.819 60.000 0.00 0.00 0.00 3.33
574 575 2.291540 CCCCCATACCAGATTGTGTTGT 60.292 50.000 0.00 0.00 0.00 3.32
581 582 4.706842 ACCAGATTGTGTTGTAGTCCTT 57.293 40.909 0.00 0.00 0.00 3.36
583 584 4.348168 ACCAGATTGTGTTGTAGTCCTTCT 59.652 41.667 0.00 0.00 0.00 2.85
584 585 4.932200 CCAGATTGTGTTGTAGTCCTTCTC 59.068 45.833 0.00 0.00 0.00 2.87
585 586 4.932200 CAGATTGTGTTGTAGTCCTTCTCC 59.068 45.833 0.00 0.00 0.00 3.71
586 587 4.593206 AGATTGTGTTGTAGTCCTTCTCCA 59.407 41.667 0.00 0.00 0.00 3.86
588 589 3.035363 TGTGTTGTAGTCCTTCTCCACA 58.965 45.455 0.00 0.00 0.00 4.17
589 590 3.646162 TGTGTTGTAGTCCTTCTCCACAT 59.354 43.478 0.00 0.00 0.00 3.21
590 591 4.246458 GTGTTGTAGTCCTTCTCCACATC 58.754 47.826 0.00 0.00 0.00 3.06
591 592 3.056821 TGTTGTAGTCCTTCTCCACATCG 60.057 47.826 0.00 0.00 0.00 3.84
592 593 2.803956 TGTAGTCCTTCTCCACATCGT 58.196 47.619 0.00 0.00 0.00 3.73
596 597 3.162666 AGTCCTTCTCCACATCGTACAA 58.837 45.455 0.00 0.00 0.00 2.41
598 599 2.094906 TCCTTCTCCACATCGTACAACG 60.095 50.000 0.00 0.00 44.19 4.10
603 604 0.162933 CCACATCGTACAACGTGCAC 59.837 55.000 6.82 6.82 43.14 4.57
619 620 0.250295 GCACACCCAGCACTAGTTCA 60.250 55.000 0.00 0.00 0.00 3.18
631 632 6.139435 CAGCACTAGTTCATCTCGTACATAG 58.861 44.000 0.00 0.00 0.00 2.23
632 633 5.823570 AGCACTAGTTCATCTCGTACATAGT 59.176 40.000 0.00 0.00 0.00 2.12
633 634 6.990939 AGCACTAGTTCATCTCGTACATAGTA 59.009 38.462 0.00 0.00 0.00 1.82
634 635 7.041916 AGCACTAGTTCATCTCGTACATAGTAC 60.042 40.741 0.00 0.00 0.00 2.73
635 636 7.041916 GCACTAGTTCATCTCGTACATAGTACT 60.042 40.741 0.00 0.00 0.00 2.73
636 637 8.489559 CACTAGTTCATCTCGTACATAGTACTC 58.510 40.741 0.00 0.00 0.00 2.59
637 638 6.864360 AGTTCATCTCGTACATAGTACTCC 57.136 41.667 0.00 0.00 0.00 3.85
638 639 5.764192 AGTTCATCTCGTACATAGTACTCCC 59.236 44.000 0.00 0.00 0.00 4.30
639 640 5.563876 TCATCTCGTACATAGTACTCCCT 57.436 43.478 0.00 0.00 0.00 4.20
640 641 5.549347 TCATCTCGTACATAGTACTCCCTC 58.451 45.833 0.00 0.00 0.00 4.30
641 642 4.348863 TCTCGTACATAGTACTCCCTCC 57.651 50.000 0.00 0.00 0.00 4.30
642 643 3.072184 TCTCGTACATAGTACTCCCTCCC 59.928 52.174 0.00 0.00 0.00 4.30
643 644 3.051581 TCGTACATAGTACTCCCTCCCT 58.948 50.000 0.00 0.00 0.00 4.20
644 645 3.461085 TCGTACATAGTACTCCCTCCCTT 59.539 47.826 0.00 0.00 0.00 3.95
645 646 4.079558 TCGTACATAGTACTCCCTCCCTTT 60.080 45.833 0.00 0.00 0.00 3.11
646 647 4.648307 CGTACATAGTACTCCCTCCCTTTT 59.352 45.833 0.00 0.00 0.00 2.27
647 648 5.128335 CGTACATAGTACTCCCTCCCTTTTT 59.872 44.000 0.00 0.00 0.00 1.94
648 649 6.322201 CGTACATAGTACTCCCTCCCTTTTTA 59.678 42.308 0.00 0.00 0.00 1.52
649 650 6.809976 ACATAGTACTCCCTCCCTTTTTAG 57.190 41.667 0.00 0.00 0.00 1.85
650 651 6.269974 ACATAGTACTCCCTCCCTTTTTAGT 58.730 40.000 0.00 0.00 0.00 2.24
651 652 6.734281 ACATAGTACTCCCTCCCTTTTTAGTT 59.266 38.462 0.00 0.00 0.00 2.24
652 653 5.758790 AGTACTCCCTCCCTTTTTAGTTC 57.241 43.478 0.00 0.00 0.00 3.01
653 654 3.697619 ACTCCCTCCCTTTTTAGTTCG 57.302 47.619 0.00 0.00 0.00 3.95
654 655 2.290134 ACTCCCTCCCTTTTTAGTTCGC 60.290 50.000 0.00 0.00 0.00 4.70
655 656 1.700739 TCCCTCCCTTTTTAGTTCGCA 59.299 47.619 0.00 0.00 0.00 5.10
656 657 2.307686 TCCCTCCCTTTTTAGTTCGCAT 59.692 45.455 0.00 0.00 0.00 4.73
657 658 3.520317 TCCCTCCCTTTTTAGTTCGCATA 59.480 43.478 0.00 0.00 0.00 3.14
658 659 4.165372 TCCCTCCCTTTTTAGTTCGCATAT 59.835 41.667 0.00 0.00 0.00 1.78
659 660 5.367352 TCCCTCCCTTTTTAGTTCGCATATA 59.633 40.000 0.00 0.00 0.00 0.86
660 661 6.059484 CCCTCCCTTTTTAGTTCGCATATAA 58.941 40.000 0.00 0.00 0.00 0.98
661 662 6.204882 CCCTCCCTTTTTAGTTCGCATATAAG 59.795 42.308 0.00 0.00 0.00 1.73
662 663 6.990349 CCTCCCTTTTTAGTTCGCATATAAGA 59.010 38.462 0.00 0.00 0.00 2.10
663 664 7.661847 CCTCCCTTTTTAGTTCGCATATAAGAT 59.338 37.037 0.00 0.00 0.00 2.40
664 665 8.974060 TCCCTTTTTAGTTCGCATATAAGATT 57.026 30.769 0.00 0.00 0.00 2.40
665 666 9.403583 TCCCTTTTTAGTTCGCATATAAGATTT 57.596 29.630 0.00 0.00 0.00 2.17
666 667 9.450807 CCCTTTTTAGTTCGCATATAAGATTTG 57.549 33.333 0.00 0.00 0.00 2.32
674 675 9.113838 AGTTCGCATATAAGATTTGATCAAAGT 57.886 29.630 24.17 14.86 33.32 2.66
675 676 9.374960 GTTCGCATATAAGATTTGATCAAAGTC 57.625 33.333 24.17 19.70 33.32 3.01
676 677 8.661352 TCGCATATAAGATTTGATCAAAGTCA 57.339 30.769 24.17 11.02 33.32 3.41
677 678 9.108284 TCGCATATAAGATTTGATCAAAGTCAA 57.892 29.630 24.17 11.64 36.38 3.18
708 709 9.871238 TGTAAAGTTTGACTAGCTTTATAGGAG 57.129 33.333 8.63 0.00 37.15 3.69
839 840 4.023739 GTTGGTCAAACTTTACAACGCT 57.976 40.909 0.00 0.00 35.75 5.07
840 841 4.417506 GTTGGTCAAACTTTACAACGCTT 58.582 39.130 0.00 0.00 35.75 4.68
841 842 4.022464 TGGTCAAACTTTACAACGCTTG 57.978 40.909 0.00 0.00 0.00 4.01
842 843 3.690139 TGGTCAAACTTTACAACGCTTGA 59.310 39.130 5.01 0.00 0.00 3.02
843 844 4.033019 GGTCAAACTTTACAACGCTTGAC 58.967 43.478 6.30 6.30 41.09 3.18
844 845 4.201881 GGTCAAACTTTACAACGCTTGACT 60.202 41.667 11.89 0.00 41.40 3.41
845 846 5.329493 GTCAAACTTTACAACGCTTGACTT 58.671 37.500 7.21 0.00 39.54 3.01
846 847 5.798434 GTCAAACTTTACAACGCTTGACTTT 59.202 36.000 7.21 0.00 39.54 2.66
847 848 5.797934 TCAAACTTTACAACGCTTGACTTTG 59.202 36.000 5.01 0.00 33.85 2.77
848 849 5.554822 AACTTTACAACGCTTGACTTTGA 57.445 34.783 5.01 0.00 32.10 2.69
849 850 4.905269 ACTTTACAACGCTTGACTTTGAC 58.095 39.130 5.01 0.00 32.10 3.18
850 851 3.955771 TTACAACGCTTGACTTTGACC 57.044 42.857 5.01 0.00 32.10 4.02
851 852 1.745232 ACAACGCTTGACTTTGACCA 58.255 45.000 5.01 0.00 32.10 4.02
852 853 2.088423 ACAACGCTTGACTTTGACCAA 58.912 42.857 5.01 0.00 32.10 3.67
853 854 2.490115 ACAACGCTTGACTTTGACCAAA 59.510 40.909 5.01 0.00 32.10 3.28
854 855 3.130340 ACAACGCTTGACTTTGACCAAAT 59.870 39.130 5.01 0.00 32.10 2.32
855 856 4.111916 CAACGCTTGACTTTGACCAAATT 58.888 39.130 0.00 0.00 29.12 1.82
856 857 3.964909 ACGCTTGACTTTGACCAAATTC 58.035 40.909 6.06 6.06 32.61 2.17
857 858 3.632145 ACGCTTGACTTTGACCAAATTCT 59.368 39.130 12.07 0.00 33.02 2.40
858 859 4.819630 ACGCTTGACTTTGACCAAATTCTA 59.180 37.500 12.07 5.89 33.02 2.10
859 860 5.473504 ACGCTTGACTTTGACCAAATTCTAT 59.526 36.000 12.07 0.00 33.02 1.98
860 861 6.653320 ACGCTTGACTTTGACCAAATTCTATA 59.347 34.615 12.07 1.23 33.02 1.31
861 862 7.336931 ACGCTTGACTTTGACCAAATTCTATAT 59.663 33.333 12.07 0.00 33.02 0.86
862 863 7.641411 CGCTTGACTTTGACCAAATTCTATATG 59.359 37.037 12.07 0.00 33.02 1.78
863 864 7.433425 GCTTGACTTTGACCAAATTCTATATGC 59.567 37.037 12.07 4.97 33.02 3.14
864 865 7.936496 TGACTTTGACCAAATTCTATATGCA 57.064 32.000 12.07 0.00 33.02 3.96
865 866 8.523915 TGACTTTGACCAAATTCTATATGCAT 57.476 30.769 3.79 3.79 33.02 3.96
866 867 9.625747 TGACTTTGACCAAATTCTATATGCATA 57.374 29.630 9.27 9.27 33.02 3.14
867 868 9.884465 GACTTTGACCAAATTCTATATGCATAC 57.116 33.333 8.99 0.00 30.31 2.39
868 869 9.632638 ACTTTGACCAAATTCTATATGCATACT 57.367 29.630 8.99 1.39 0.00 2.12
884 885 6.249035 TGCATACTAAAAAGAAACGGAAGG 57.751 37.500 0.00 0.00 0.00 3.46
885 886 5.998981 TGCATACTAAAAAGAAACGGAAGGA 59.001 36.000 0.00 0.00 0.00 3.36
886 887 6.148811 TGCATACTAAAAAGAAACGGAAGGAG 59.851 38.462 0.00 0.00 0.00 3.69
887 888 6.148976 GCATACTAAAAAGAAACGGAAGGAGT 59.851 38.462 0.00 0.00 0.00 3.85
1012 1014 0.109597 GAAGCCCACAAATCGCACAG 60.110 55.000 0.00 0.00 0.00 3.66
1019 1021 1.465777 CACAAATCGCACAGCATCAGA 59.534 47.619 0.00 0.00 0.00 3.27
1215 1227 1.070786 GCCAAACAGGAGGTGACGA 59.929 57.895 0.00 0.00 41.22 4.20
1398 1428 1.095600 GGCGAAGAATGGAGTTTCCC 58.904 55.000 0.00 0.00 35.03 3.97
1410 1440 3.118408 TGGAGTTTCCCGTGATGATAAGG 60.118 47.826 0.00 0.00 35.03 2.69
1414 1444 1.301716 CCCGTGATGATAAGGGCGG 60.302 63.158 0.00 0.00 37.07 6.13
1494 1539 6.870971 ACAATAACAACAACTACAACGGAT 57.129 33.333 0.00 0.00 0.00 4.18
1537 1582 2.032860 ATGTCGGGCAGATTCGGAGG 62.033 60.000 0.00 0.00 0.00 4.30
1660 1708 1.524002 CGAGCCTGGATGACACCAT 59.476 57.895 0.00 0.00 39.34 3.55
1727 1781 9.921637 CCTTTTAACATATTTTGTAGGCTTTCA 57.078 29.630 0.00 0.00 37.68 2.69
1745 1804 5.163963 GCTTTCAATTTGTTAATCGGCTTGG 60.164 40.000 0.00 0.00 0.00 3.61
1746 1805 3.843999 TCAATTTGTTAATCGGCTTGGC 58.156 40.909 0.00 0.00 0.00 4.52
1776 1845 3.936453 ACATGTTCGTGTAATTGCCGTAT 59.064 39.130 0.00 0.00 0.00 3.06
1821 1891 2.288458 GTCTTGGGACTACTCGATCGAG 59.712 54.545 36.95 36.95 41.94 4.04
1839 1909 3.693085 TCGAGTGGTCTGTGGTATCTTAC 59.307 47.826 0.00 0.00 0.00 2.34
1840 1910 3.695060 CGAGTGGTCTGTGGTATCTTACT 59.305 47.826 0.00 0.00 0.00 2.24
1841 1911 4.201930 CGAGTGGTCTGTGGTATCTTACTC 60.202 50.000 0.00 0.00 0.00 2.59
1842 1912 4.936802 AGTGGTCTGTGGTATCTTACTCT 58.063 43.478 0.00 0.00 0.00 3.24
1843 1913 4.951094 AGTGGTCTGTGGTATCTTACTCTC 59.049 45.833 0.00 0.00 0.00 3.20
2025 2100 9.830975 ACCAAAATTTGCTAAAAACTGACTAAT 57.169 25.926 0.00 0.00 0.00 1.73
2201 2284 1.227380 GGCACTCCACTGGATAGCG 60.227 63.158 13.06 0.00 33.91 4.26
2307 2393 3.459227 TGATTGCACCTGATTCATCCCTA 59.541 43.478 0.00 0.00 0.00 3.53
2368 2454 6.380560 TGAAAATGACCCATCAATATTCAGCA 59.619 34.615 0.00 0.00 38.69 4.41
2516 2604 3.336568 ACTCTGCAGGGCCAGCAT 61.337 61.111 24.60 6.89 41.82 3.79
2635 2723 3.861276 TCGTCATTAGTGTACACAGGG 57.139 47.619 27.06 13.51 0.00 4.45
2660 2748 3.708121 TGCTCTTCAGATAGATCAGGCAA 59.292 43.478 0.00 0.00 0.00 4.52
2726 2814 0.554305 TCCGGGATACTCCACTGCTA 59.446 55.000 0.00 0.00 38.64 3.49
2828 2917 6.665992 ACAGGACATAAGTTAGACACTTCA 57.334 37.500 0.00 0.00 42.62 3.02
2839 2928 1.961394 AGACACTTCAAGACTACGGCA 59.039 47.619 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.450134 TCAGGCATGCACGATCCAC 60.450 57.895 21.36 0.00 0.00 4.02
11 12 1.450134 GTCAGGCATGCACGATCCA 60.450 57.895 21.36 0.00 0.00 3.41
12 13 2.528743 CGTCAGGCATGCACGATCC 61.529 63.158 20.75 2.31 34.17 3.36
13 14 3.009140 CGTCAGGCATGCACGATC 58.991 61.111 20.75 3.05 34.17 3.69
14 15 3.197790 GCGTCAGGCATGCACGAT 61.198 61.111 27.21 5.76 42.87 3.73
23 24 2.904866 TGGTGGTTTGCGTCAGGC 60.905 61.111 0.00 0.00 43.96 4.85
24 25 1.507141 GACTGGTGGTTTGCGTCAGG 61.507 60.000 0.00 0.00 0.00 3.86
25 26 1.831389 CGACTGGTGGTTTGCGTCAG 61.831 60.000 0.00 0.00 0.00 3.51
26 27 1.885388 CGACTGGTGGTTTGCGTCA 60.885 57.895 0.00 0.00 0.00 4.35
27 28 1.593209 TCGACTGGTGGTTTGCGTC 60.593 57.895 0.00 0.00 0.00 5.19
28 29 1.885850 GTCGACTGGTGGTTTGCGT 60.886 57.895 8.70 0.00 0.00 5.24
29 30 1.594293 AGTCGACTGGTGGTTTGCG 60.594 57.895 19.30 0.00 0.00 4.85
30 31 1.941812 CAGTCGACTGGTGGTTTGC 59.058 57.895 33.36 0.00 40.20 3.68
44 45 4.094090 ACGAGAAATCTAACGACCAGTC 57.906 45.455 0.00 0.00 0.00 3.51
45 46 5.356190 TCATACGAGAAATCTAACGACCAGT 59.644 40.000 0.00 0.00 0.00 4.00
46 47 5.817988 TCATACGAGAAATCTAACGACCAG 58.182 41.667 0.00 0.00 0.00 4.00
47 48 5.823209 TCATACGAGAAATCTAACGACCA 57.177 39.130 0.00 0.00 0.00 4.02
48 49 7.515957 TTTTCATACGAGAAATCTAACGACC 57.484 36.000 0.00 0.00 37.35 4.79
107 108 5.208121 TGAGAACCATGAAAAGTCCCTTTT 58.792 37.500 0.00 1.79 44.92 2.27
108 109 4.803452 TGAGAACCATGAAAAGTCCCTTT 58.197 39.130 0.00 0.00 34.94 3.11
109 110 4.453480 TGAGAACCATGAAAAGTCCCTT 57.547 40.909 0.00 0.00 0.00 3.95
110 111 4.664688 ATGAGAACCATGAAAAGTCCCT 57.335 40.909 0.00 0.00 33.39 4.20
121 122 3.561313 GGGGTGTTACACATGAGAACCAT 60.561 47.826 17.67 0.00 35.86 3.55
122 123 2.224670 GGGGTGTTACACATGAGAACCA 60.225 50.000 17.67 0.00 35.86 3.67
123 124 2.224670 TGGGGTGTTACACATGAGAACC 60.225 50.000 17.67 6.96 35.86 3.62
124 125 3.134574 TGGGGTGTTACACATGAGAAC 57.865 47.619 17.67 0.85 35.86 3.01
125 126 3.308117 GGATGGGGTGTTACACATGAGAA 60.308 47.826 17.67 0.00 35.86 2.87
126 127 2.238646 GGATGGGGTGTTACACATGAGA 59.761 50.000 17.67 0.00 35.86 3.27
127 128 2.026356 TGGATGGGGTGTTACACATGAG 60.026 50.000 17.67 0.00 35.86 2.90
128 129 1.988846 TGGATGGGGTGTTACACATGA 59.011 47.619 17.67 0.03 35.86 3.07
129 130 2.505650 TGGATGGGGTGTTACACATG 57.494 50.000 17.67 0.00 35.86 3.21
130 131 2.358090 CCATGGATGGGGTGTTACACAT 60.358 50.000 17.67 2.15 44.31 3.21
131 132 1.005332 CCATGGATGGGGTGTTACACA 59.995 52.381 17.67 0.00 44.31 3.72
132 133 1.762708 CCATGGATGGGGTGTTACAC 58.237 55.000 5.56 6.99 44.31 2.90
142 143 1.454479 GGTGACAGCCCATGGATGG 60.454 63.158 15.22 3.98 44.23 3.51
143 144 4.247781 GGTGACAGCCCATGGATG 57.752 61.111 15.22 14.24 45.59 3.51
150 151 3.537765 ACGAAGTATAGGGTGACAGCCC 61.538 54.545 20.02 11.98 45.21 5.19
151 152 1.755380 ACGAAGTATAGGGTGACAGCC 59.245 52.381 16.14 16.14 41.94 4.85
152 153 4.097589 AGTTACGAAGTATAGGGTGACAGC 59.902 45.833 0.00 0.00 45.21 4.40
153 154 5.450137 CCAGTTACGAAGTATAGGGTGACAG 60.450 48.000 0.00 0.00 45.21 3.51
154 155 4.400251 CCAGTTACGAAGTATAGGGTGACA 59.600 45.833 0.00 0.00 45.21 3.58
155 156 4.202090 CCCAGTTACGAAGTATAGGGTGAC 60.202 50.000 0.00 0.00 45.21 3.67
156 157 3.956199 CCCAGTTACGAAGTATAGGGTGA 59.044 47.826 0.00 0.00 45.21 4.02
157 158 3.492137 GCCCAGTTACGAAGTATAGGGTG 60.492 52.174 0.00 0.00 45.21 4.61
158 159 2.697229 GCCCAGTTACGAAGTATAGGGT 59.303 50.000 0.00 0.00 45.21 4.34
159 160 2.036862 GGCCCAGTTACGAAGTATAGGG 59.963 54.545 0.00 0.00 45.21 3.53
160 161 2.963782 AGGCCCAGTTACGAAGTATAGG 59.036 50.000 0.00 0.00 45.21 2.57
161 162 3.243771 CCAGGCCCAGTTACGAAGTATAG 60.244 52.174 0.00 0.00 45.21 1.31
162 163 2.696707 CCAGGCCCAGTTACGAAGTATA 59.303 50.000 0.00 0.00 45.21 1.47
163 164 1.485066 CCAGGCCCAGTTACGAAGTAT 59.515 52.381 0.00 0.00 45.21 2.12
164 165 0.899720 CCAGGCCCAGTTACGAAGTA 59.100 55.000 0.00 0.00 45.11 2.24
166 167 1.078426 CCCAGGCCCAGTTACGAAG 60.078 63.158 0.00 0.00 0.00 3.79
167 168 3.074281 CCCAGGCCCAGTTACGAA 58.926 61.111 0.00 0.00 0.00 3.85
168 169 2.808761 TAGCCCAGGCCCAGTTACGA 62.809 60.000 4.70 0.00 43.17 3.43
169 170 2.363975 TAGCCCAGGCCCAGTTACG 61.364 63.158 4.70 0.00 43.17 3.18
170 171 1.223763 GTAGCCCAGGCCCAGTTAC 59.776 63.158 4.70 0.00 43.17 2.50
171 172 0.842905 TTGTAGCCCAGGCCCAGTTA 60.843 55.000 4.70 0.00 43.17 2.24
172 173 2.142292 CTTGTAGCCCAGGCCCAGTT 62.142 60.000 4.70 0.00 43.17 3.16
173 174 2.531685 TTGTAGCCCAGGCCCAGT 60.532 61.111 4.70 0.00 43.17 4.00
174 175 1.639635 ATCTTGTAGCCCAGGCCCAG 61.640 60.000 4.70 0.00 43.17 4.45
175 176 1.619363 ATCTTGTAGCCCAGGCCCA 60.619 57.895 4.70 0.00 43.17 5.36
176 177 1.152881 CATCTTGTAGCCCAGGCCC 60.153 63.158 4.70 0.00 43.17 5.80
177 178 1.152881 CCATCTTGTAGCCCAGGCC 60.153 63.158 4.70 0.00 43.17 5.19
178 179 1.152881 CCCATCTTGTAGCCCAGGC 60.153 63.158 0.00 0.00 42.33 4.85
179 180 1.152881 GCCCATCTTGTAGCCCAGG 60.153 63.158 0.00 0.00 0.00 4.45
180 181 1.152881 GGCCCATCTTGTAGCCCAG 60.153 63.158 0.00 0.00 39.60 4.45
181 182 3.006677 GGCCCATCTTGTAGCCCA 58.993 61.111 0.00 0.00 39.60 5.36
182 183 2.203209 CGGCCCATCTTGTAGCCC 60.203 66.667 0.00 0.00 42.66 5.19
183 184 1.523938 GACGGCCCATCTTGTAGCC 60.524 63.158 0.00 0.00 42.18 3.93
184 185 1.523938 GGACGGCCCATCTTGTAGC 60.524 63.158 0.00 0.00 34.14 3.58
185 186 1.904771 TGGACGGCCCATCTTGTAG 59.095 57.895 3.83 0.00 40.82 2.74
186 187 4.138665 TGGACGGCCCATCTTGTA 57.861 55.556 3.83 0.00 40.82 2.41
194 195 3.699134 GACCTCCAATGGACGGCCC 62.699 68.421 3.83 0.00 0.00 5.80
195 196 2.124695 GACCTCCAATGGACGGCC 60.125 66.667 0.00 0.00 0.00 6.13
196 197 2.511600 CGACCTCCAATGGACGGC 60.512 66.667 14.85 5.96 40.47 5.68
198 199 0.321298 AAACCGACCTCCAATGGACG 60.321 55.000 0.00 0.13 42.91 4.79
199 200 1.450025 GAAACCGACCTCCAATGGAC 58.550 55.000 0.00 0.00 0.00 4.02
200 201 0.326927 GGAAACCGACCTCCAATGGA 59.673 55.000 0.48 0.48 0.00 3.41
201 202 0.679960 GGGAAACCGACCTCCAATGG 60.680 60.000 0.00 0.00 43.64 3.16
202 203 2.868253 GGGAAACCGACCTCCAATG 58.132 57.895 0.00 0.00 43.64 2.82
214 215 2.110352 CGTGCCGTATGGGGGAAAC 61.110 63.158 2.41 0.00 35.78 2.78
215 216 2.269562 CGTGCCGTATGGGGGAAA 59.730 61.111 2.41 0.00 35.78 3.13
216 217 3.788145 CCGTGCCGTATGGGGGAA 61.788 66.667 2.41 0.00 35.78 3.97
221 222 2.279918 GTAGCCCGTGCCGTATGG 60.280 66.667 0.00 0.00 38.69 2.74
222 223 0.315886 TATGTAGCCCGTGCCGTATG 59.684 55.000 0.00 0.00 38.69 2.39
223 224 1.067142 CATATGTAGCCCGTGCCGTAT 60.067 52.381 0.00 0.00 38.69 3.06
224 225 0.315886 CATATGTAGCCCGTGCCGTA 59.684 55.000 0.00 0.00 38.69 4.02
225 226 1.069090 CATATGTAGCCCGTGCCGT 59.931 57.895 0.00 0.00 38.69 5.68
226 227 2.317609 GCATATGTAGCCCGTGCCG 61.318 63.158 4.29 0.00 38.69 5.69
227 228 0.817634 TTGCATATGTAGCCCGTGCC 60.818 55.000 4.29 0.00 38.69 5.01
228 229 1.197721 GATTGCATATGTAGCCCGTGC 59.802 52.381 4.29 0.00 36.39 5.34
229 230 1.460743 CGATTGCATATGTAGCCCGTG 59.539 52.381 4.29 0.00 0.00 4.94
230 231 1.608025 CCGATTGCATATGTAGCCCGT 60.608 52.381 4.29 0.00 0.00 5.28
231 232 1.078709 CCGATTGCATATGTAGCCCG 58.921 55.000 4.29 4.85 0.00 6.13
232 233 1.003118 TCCCGATTGCATATGTAGCCC 59.997 52.381 4.29 0.00 0.00 5.19
233 234 2.028112 TCTCCCGATTGCATATGTAGCC 60.028 50.000 4.29 0.00 0.00 3.93
234 235 3.257393 CTCTCCCGATTGCATATGTAGC 58.743 50.000 4.29 0.00 0.00 3.58
235 236 3.257393 GCTCTCCCGATTGCATATGTAG 58.743 50.000 4.29 0.00 0.00 2.74
236 237 2.632512 TGCTCTCCCGATTGCATATGTA 59.367 45.455 4.29 0.00 0.00 2.29
237 238 1.417517 TGCTCTCCCGATTGCATATGT 59.582 47.619 4.29 0.00 0.00 2.29
238 239 2.174363 TGCTCTCCCGATTGCATATG 57.826 50.000 0.00 0.00 0.00 1.78
239 240 3.681034 GCTATGCTCTCCCGATTGCATAT 60.681 47.826 6.92 0.00 44.16 1.78
240 241 2.354103 GCTATGCTCTCCCGATTGCATA 60.354 50.000 0.00 0.00 43.27 3.14
241 242 1.610102 GCTATGCTCTCCCGATTGCAT 60.610 52.381 0.00 0.00 46.22 3.96
242 243 0.250038 GCTATGCTCTCCCGATTGCA 60.250 55.000 0.00 0.00 39.83 4.08
243 244 1.287730 CGCTATGCTCTCCCGATTGC 61.288 60.000 0.00 0.00 0.00 3.56
244 245 0.668706 CCGCTATGCTCTCCCGATTG 60.669 60.000 0.00 0.00 0.00 2.67
245 246 0.827925 TCCGCTATGCTCTCCCGATT 60.828 55.000 0.00 0.00 0.00 3.34
246 247 1.228583 TCCGCTATGCTCTCCCGAT 60.229 57.895 0.00 0.00 0.00 4.18
247 248 1.899054 CTCCGCTATGCTCTCCCGA 60.899 63.158 0.00 0.00 0.00 5.14
248 249 2.647875 CTCCGCTATGCTCTCCCG 59.352 66.667 0.00 0.00 0.00 5.14
249 250 2.578714 CCCTCCGCTATGCTCTCCC 61.579 68.421 0.00 0.00 0.00 4.30
250 251 3.055580 CCCTCCGCTATGCTCTCC 58.944 66.667 0.00 0.00 0.00 3.71
251 252 1.825281 ATGCCCTCCGCTATGCTCTC 61.825 60.000 0.00 0.00 38.78 3.20
252 253 1.825281 GATGCCCTCCGCTATGCTCT 61.825 60.000 0.00 0.00 38.78 4.09
253 254 1.375268 GATGCCCTCCGCTATGCTC 60.375 63.158 0.00 0.00 38.78 4.26
254 255 2.746359 GATGCCCTCCGCTATGCT 59.254 61.111 0.00 0.00 38.78 3.79
255 256 2.715532 TTCGATGCCCTCCGCTATGC 62.716 60.000 0.00 0.00 38.78 3.14
256 257 0.249868 TTTCGATGCCCTCCGCTATG 60.250 55.000 0.00 0.00 38.78 2.23
257 258 0.468226 TTTTCGATGCCCTCCGCTAT 59.532 50.000 0.00 0.00 38.78 2.97
258 259 0.468226 ATTTTCGATGCCCTCCGCTA 59.532 50.000 0.00 0.00 38.78 4.26
259 260 1.097547 CATTTTCGATGCCCTCCGCT 61.098 55.000 0.00 0.00 38.78 5.52
260 261 1.095228 TCATTTTCGATGCCCTCCGC 61.095 55.000 0.00 0.00 38.31 5.54
261 262 1.064060 GTTCATTTTCGATGCCCTCCG 59.936 52.381 0.00 0.00 0.00 4.63
262 263 2.098117 CAGTTCATTTTCGATGCCCTCC 59.902 50.000 0.00 0.00 0.00 4.30
263 264 3.009723 TCAGTTCATTTTCGATGCCCTC 58.990 45.455 0.00 0.00 0.00 4.30
264 265 3.071874 TCAGTTCATTTTCGATGCCCT 57.928 42.857 0.00 0.00 0.00 5.19
265 266 3.848272 TTCAGTTCATTTTCGATGCCC 57.152 42.857 0.00 0.00 0.00 5.36
266 267 4.031028 CGATTCAGTTCATTTTCGATGCC 58.969 43.478 0.00 0.00 0.00 4.40
267 268 4.651994 ACGATTCAGTTCATTTTCGATGC 58.348 39.130 0.00 0.00 0.00 3.91
268 269 5.163864 TGGACGATTCAGTTCATTTTCGATG 60.164 40.000 0.00 0.00 0.00 3.84
269 270 4.935205 TGGACGATTCAGTTCATTTTCGAT 59.065 37.500 0.00 0.00 0.00 3.59
270 271 4.151689 GTGGACGATTCAGTTCATTTTCGA 59.848 41.667 0.00 0.00 31.43 3.71
271 272 4.394795 GTGGACGATTCAGTTCATTTTCG 58.605 43.478 0.00 0.00 31.43 3.46
272 273 4.215399 TGGTGGACGATTCAGTTCATTTTC 59.785 41.667 0.00 0.00 31.43 2.29
273 274 4.141287 TGGTGGACGATTCAGTTCATTTT 58.859 39.130 0.00 0.00 31.43 1.82
274 275 3.750371 TGGTGGACGATTCAGTTCATTT 58.250 40.909 0.00 0.00 31.43 2.32
275 276 3.417069 TGGTGGACGATTCAGTTCATT 57.583 42.857 0.00 0.00 31.43 2.57
276 277 3.074412 GTTGGTGGACGATTCAGTTCAT 58.926 45.455 0.00 0.00 31.43 2.57
277 278 2.104111 AGTTGGTGGACGATTCAGTTCA 59.896 45.455 0.00 0.00 0.00 3.18
278 279 2.767505 AGTTGGTGGACGATTCAGTTC 58.232 47.619 0.00 0.00 0.00 3.01
279 280 2.930826 AGTTGGTGGACGATTCAGTT 57.069 45.000 0.00 0.00 0.00 3.16
280 281 2.368875 AGAAGTTGGTGGACGATTCAGT 59.631 45.455 0.00 0.00 0.00 3.41
281 282 2.996621 GAGAAGTTGGTGGACGATTCAG 59.003 50.000 0.00 0.00 0.00 3.02
282 283 2.367241 TGAGAAGTTGGTGGACGATTCA 59.633 45.455 0.00 0.00 0.00 2.57
283 284 3.040147 TGAGAAGTTGGTGGACGATTC 57.960 47.619 0.00 0.00 0.00 2.52
284 285 3.261897 AGATGAGAAGTTGGTGGACGATT 59.738 43.478 0.00 0.00 0.00 3.34
285 286 2.834549 AGATGAGAAGTTGGTGGACGAT 59.165 45.455 0.00 0.00 0.00 3.73
286 287 2.231478 GAGATGAGAAGTTGGTGGACGA 59.769 50.000 0.00 0.00 0.00 4.20
287 288 2.611518 GAGATGAGAAGTTGGTGGACG 58.388 52.381 0.00 0.00 0.00 4.79
288 289 2.569404 AGGAGATGAGAAGTTGGTGGAC 59.431 50.000 0.00 0.00 0.00 4.02
289 290 2.907892 AGGAGATGAGAAGTTGGTGGA 58.092 47.619 0.00 0.00 0.00 4.02
290 291 3.262915 AGAAGGAGATGAGAAGTTGGTGG 59.737 47.826 0.00 0.00 0.00 4.61
291 292 4.502962 GAGAAGGAGATGAGAAGTTGGTG 58.497 47.826 0.00 0.00 0.00 4.17
292 293 3.517500 GGAGAAGGAGATGAGAAGTTGGT 59.482 47.826 0.00 0.00 0.00 3.67
293 294 3.517100 TGGAGAAGGAGATGAGAAGTTGG 59.483 47.826 0.00 0.00 0.00 3.77
294 295 4.815533 TGGAGAAGGAGATGAGAAGTTG 57.184 45.455 0.00 0.00 0.00 3.16
295 296 6.385766 AATTGGAGAAGGAGATGAGAAGTT 57.614 37.500 0.00 0.00 0.00 2.66
296 297 5.104569 GGAATTGGAGAAGGAGATGAGAAGT 60.105 44.000 0.00 0.00 0.00 3.01
297 298 5.130809 AGGAATTGGAGAAGGAGATGAGAAG 59.869 44.000 0.00 0.00 0.00 2.85
298 299 5.035556 AGGAATTGGAGAAGGAGATGAGAA 58.964 41.667 0.00 0.00 0.00 2.87
299 300 4.629122 AGGAATTGGAGAAGGAGATGAGA 58.371 43.478 0.00 0.00 0.00 3.27
300 301 4.408270 TGAGGAATTGGAGAAGGAGATGAG 59.592 45.833 0.00 0.00 0.00 2.90
301 302 4.365368 TGAGGAATTGGAGAAGGAGATGA 58.635 43.478 0.00 0.00 0.00 2.92
302 303 4.767578 TGAGGAATTGGAGAAGGAGATG 57.232 45.455 0.00 0.00 0.00 2.90
303 304 4.350520 GGATGAGGAATTGGAGAAGGAGAT 59.649 45.833 0.00 0.00 0.00 2.75
304 305 3.713764 GGATGAGGAATTGGAGAAGGAGA 59.286 47.826 0.00 0.00 0.00 3.71
305 306 3.181446 GGGATGAGGAATTGGAGAAGGAG 60.181 52.174 0.00 0.00 0.00 3.69
306 307 2.780010 GGGATGAGGAATTGGAGAAGGA 59.220 50.000 0.00 0.00 0.00 3.36
307 308 2.158549 GGGGATGAGGAATTGGAGAAGG 60.159 54.545 0.00 0.00 0.00 3.46
308 309 2.782341 AGGGGATGAGGAATTGGAGAAG 59.218 50.000 0.00 0.00 0.00 2.85
309 310 2.511218 CAGGGGATGAGGAATTGGAGAA 59.489 50.000 0.00 0.00 0.00 2.87
310 311 2.130193 CAGGGGATGAGGAATTGGAGA 58.870 52.381 0.00 0.00 0.00 3.71
311 312 1.478288 GCAGGGGATGAGGAATTGGAG 60.478 57.143 0.00 0.00 0.00 3.86
312 313 0.552848 GCAGGGGATGAGGAATTGGA 59.447 55.000 0.00 0.00 0.00 3.53
313 314 0.554792 AGCAGGGGATGAGGAATTGG 59.445 55.000 0.00 0.00 0.00 3.16
314 315 2.441001 AGTAGCAGGGGATGAGGAATTG 59.559 50.000 0.00 0.00 0.00 2.32
315 316 2.708325 GAGTAGCAGGGGATGAGGAATT 59.292 50.000 0.00 0.00 0.00 2.17
316 317 2.090267 AGAGTAGCAGGGGATGAGGAAT 60.090 50.000 0.00 0.00 0.00 3.01
317 318 1.292242 AGAGTAGCAGGGGATGAGGAA 59.708 52.381 0.00 0.00 0.00 3.36
318 319 0.937441 AGAGTAGCAGGGGATGAGGA 59.063 55.000 0.00 0.00 0.00 3.71
319 320 2.685106 TAGAGTAGCAGGGGATGAGG 57.315 55.000 0.00 0.00 0.00 3.86
320 321 4.016444 GAGATAGAGTAGCAGGGGATGAG 58.984 52.174 0.00 0.00 0.00 2.90
321 322 3.245443 GGAGATAGAGTAGCAGGGGATGA 60.245 52.174 0.00 0.00 0.00 2.92
322 323 3.096092 GGAGATAGAGTAGCAGGGGATG 58.904 54.545 0.00 0.00 0.00 3.51
323 324 3.000360 AGGAGATAGAGTAGCAGGGGAT 59.000 50.000 0.00 0.00 0.00 3.85
324 325 2.377193 GAGGAGATAGAGTAGCAGGGGA 59.623 54.545 0.00 0.00 0.00 4.81
325 326 2.556559 GGAGGAGATAGAGTAGCAGGGG 60.557 59.091 0.00 0.00 0.00 4.79
335 336 2.542257 AGGGAGGAGGAGGAGATAGA 57.458 55.000 0.00 0.00 0.00 1.98
336 337 3.238597 CAAAGGGAGGAGGAGGAGATAG 58.761 54.545 0.00 0.00 0.00 2.08
377 378 6.176183 ACAACAATTGAGAGATACAAGGAGG 58.824 40.000 13.59 0.00 0.00 4.30
499 500 2.205022 TGATTGGGCCTCAAGTTCTG 57.795 50.000 4.53 0.00 38.95 3.02
503 504 2.242043 CAGTTTGATTGGGCCTCAAGT 58.758 47.619 4.53 0.00 38.95 3.16
515 516 3.446873 TGACTTGGTTGCAACAGTTTGAT 59.553 39.130 29.55 9.01 34.24 2.57
518 519 3.195396 ACATGACTTGGTTGCAACAGTTT 59.805 39.130 29.55 14.16 0.00 2.66
539 540 4.459089 GGGGCGTCTGGCTCTGAC 62.459 72.222 0.00 3.25 43.72 3.51
542 543 3.696518 TATGGGGGCGTCTGGCTCT 62.697 63.158 0.00 0.00 43.72 4.09
570 571 3.056749 ACGATGTGGAGAAGGACTACAAC 60.057 47.826 0.00 0.00 41.61 3.32
574 575 3.959293 TGTACGATGTGGAGAAGGACTA 58.041 45.455 0.00 0.00 0.00 2.59
581 582 1.667756 GCACGTTGTACGATGTGGAGA 60.668 52.381 28.77 0.00 46.05 3.71
583 584 0.032267 TGCACGTTGTACGATGTGGA 59.968 50.000 28.77 25.58 46.05 4.02
584 585 0.162933 GTGCACGTTGTACGATGTGG 59.837 55.000 28.77 15.47 46.05 4.17
585 586 0.855995 TGTGCACGTTGTACGATGTG 59.144 50.000 25.40 25.40 46.05 3.21
586 587 0.856641 GTGTGCACGTTGTACGATGT 59.143 50.000 13.13 1.79 46.05 3.06
588 589 0.947180 GGGTGTGCACGTTGTACGAT 60.947 55.000 13.13 0.00 46.05 3.73
589 590 1.592131 GGGTGTGCACGTTGTACGA 60.592 57.895 13.13 0.00 46.05 3.43
591 592 1.938861 CTGGGTGTGCACGTTGTAC 59.061 57.895 13.13 3.88 33.42 2.90
592 593 1.890041 GCTGGGTGTGCACGTTGTA 60.890 57.895 13.13 0.00 0.00 2.41
603 604 2.736719 CGAGATGAACTAGTGCTGGGTG 60.737 54.545 1.64 0.00 0.00 4.61
619 620 4.263418 GGGAGGGAGTACTATGTACGAGAT 60.263 50.000 0.00 0.00 0.00 2.75
631 632 4.502016 CGAACTAAAAAGGGAGGGAGTAC 58.498 47.826 0.00 0.00 0.00 2.73
632 633 3.055602 GCGAACTAAAAAGGGAGGGAGTA 60.056 47.826 0.00 0.00 0.00 2.59
633 634 2.290134 GCGAACTAAAAAGGGAGGGAGT 60.290 50.000 0.00 0.00 0.00 3.85
634 635 2.290071 TGCGAACTAAAAAGGGAGGGAG 60.290 50.000 0.00 0.00 0.00 4.30
635 636 1.700739 TGCGAACTAAAAAGGGAGGGA 59.299 47.619 0.00 0.00 0.00 4.20
636 637 2.194201 TGCGAACTAAAAAGGGAGGG 57.806 50.000 0.00 0.00 0.00 4.30
637 638 6.990349 TCTTATATGCGAACTAAAAAGGGAGG 59.010 38.462 0.00 0.00 0.00 4.30
638 639 8.608844 ATCTTATATGCGAACTAAAAAGGGAG 57.391 34.615 0.00 0.00 0.00 4.30
639 640 8.974060 AATCTTATATGCGAACTAAAAAGGGA 57.026 30.769 0.00 0.00 0.00 4.20
640 641 9.450807 CAAATCTTATATGCGAACTAAAAAGGG 57.549 33.333 0.00 0.00 0.00 3.95
648 649 9.113838 ACTTTGATCAAATCTTATATGCGAACT 57.886 29.630 20.76 0.00 0.00 3.01
649 650 9.374960 GACTTTGATCAAATCTTATATGCGAAC 57.625 33.333 20.76 3.21 0.00 3.95
650 651 9.108284 TGACTTTGATCAAATCTTATATGCGAA 57.892 29.630 20.76 0.00 0.00 4.70
651 652 8.661352 TGACTTTGATCAAATCTTATATGCGA 57.339 30.769 20.76 0.00 0.00 5.10
652 653 9.720667 TTTGACTTTGATCAAATCTTATATGCG 57.279 29.630 20.76 8.05 42.32 4.73
682 683 9.871238 CTCCTATAAAGCTAGTCAAACTTTACA 57.129 33.333 0.00 0.00 38.36 2.41
818 819 4.023739 AGCGTTGTAAAGTTTGACCAAC 57.976 40.909 13.40 13.40 35.32 3.77
819 820 4.156190 TCAAGCGTTGTAAAGTTTGACCAA 59.844 37.500 0.00 0.00 33.73 3.67
820 821 3.690139 TCAAGCGTTGTAAAGTTTGACCA 59.310 39.130 0.00 0.00 33.73 4.02
821 822 4.033019 GTCAAGCGTTGTAAAGTTTGACC 58.967 43.478 20.65 9.62 46.03 4.02
823 824 5.554822 AAGTCAAGCGTTGTAAAGTTTGA 57.445 34.783 0.00 5.92 35.72 2.69
824 825 5.797934 TCAAAGTCAAGCGTTGTAAAGTTTG 59.202 36.000 0.00 1.90 37.72 2.93
825 826 5.798434 GTCAAAGTCAAGCGTTGTAAAGTTT 59.202 36.000 0.00 0.00 37.72 2.66
826 827 5.329493 GTCAAAGTCAAGCGTTGTAAAGTT 58.671 37.500 0.00 0.00 37.72 2.66
827 828 4.201881 GGTCAAAGTCAAGCGTTGTAAAGT 60.202 41.667 0.00 0.00 37.72 2.66
828 829 4.201871 TGGTCAAAGTCAAGCGTTGTAAAG 60.202 41.667 0.00 0.00 37.72 1.85
829 830 3.690139 TGGTCAAAGTCAAGCGTTGTAAA 59.310 39.130 0.00 0.00 37.72 2.01
830 831 3.271729 TGGTCAAAGTCAAGCGTTGTAA 58.728 40.909 0.00 0.00 37.72 2.41
831 832 2.907634 TGGTCAAAGTCAAGCGTTGTA 58.092 42.857 0.00 0.00 37.72 2.41
832 833 1.745232 TGGTCAAAGTCAAGCGTTGT 58.255 45.000 0.00 0.00 37.72 3.32
833 834 2.842208 TTGGTCAAAGTCAAGCGTTG 57.158 45.000 0.00 0.00 37.80 4.10
834 835 4.097892 AGAATTTGGTCAAAGTCAAGCGTT 59.902 37.500 20.80 2.23 44.87 4.84
835 836 3.632145 AGAATTTGGTCAAAGTCAAGCGT 59.368 39.130 20.80 2.81 44.87 5.07
836 837 4.228912 AGAATTTGGTCAAAGTCAAGCG 57.771 40.909 20.80 0.00 44.87 4.68
837 838 7.433425 GCATATAGAATTTGGTCAAAGTCAAGC 59.567 37.037 20.80 14.14 44.87 4.01
838 839 8.461222 TGCATATAGAATTTGGTCAAAGTCAAG 58.539 33.333 20.80 9.92 44.87 3.02
839 840 8.347004 TGCATATAGAATTTGGTCAAAGTCAA 57.653 30.769 20.80 9.92 44.87 3.18
840 841 7.936496 TGCATATAGAATTTGGTCAAAGTCA 57.064 32.000 20.80 10.70 44.87 3.41
841 842 9.884465 GTATGCATATAGAATTTGGTCAAAGTC 57.116 33.333 10.16 13.82 43.37 3.01
842 843 9.632638 AGTATGCATATAGAATTTGGTCAAAGT 57.367 29.630 10.16 0.00 33.32 2.66
858 859 8.621286 CCTTCCGTTTCTTTTTAGTATGCATAT 58.379 33.333 10.16 2.05 0.00 1.78
859 860 7.825270 TCCTTCCGTTTCTTTTTAGTATGCATA 59.175 33.333 1.16 1.16 0.00 3.14
860 861 6.657541 TCCTTCCGTTTCTTTTTAGTATGCAT 59.342 34.615 3.79 3.79 0.00 3.96
861 862 5.998981 TCCTTCCGTTTCTTTTTAGTATGCA 59.001 36.000 0.00 0.00 0.00 3.96
862 863 6.148976 ACTCCTTCCGTTTCTTTTTAGTATGC 59.851 38.462 0.00 0.00 0.00 3.14
863 864 7.668525 ACTCCTTCCGTTTCTTTTTAGTATG 57.331 36.000 0.00 0.00 0.00 2.39
864 865 8.591940 AGTACTCCTTCCGTTTCTTTTTAGTAT 58.408 33.333 0.00 0.00 0.00 2.12
865 866 7.955918 AGTACTCCTTCCGTTTCTTTTTAGTA 58.044 34.615 0.00 0.00 0.00 1.82
866 867 6.824553 AGTACTCCTTCCGTTTCTTTTTAGT 58.175 36.000 0.00 0.00 0.00 2.24
867 868 8.822652 TTAGTACTCCTTCCGTTTCTTTTTAG 57.177 34.615 0.00 0.00 0.00 1.85
868 869 9.428097 GATTAGTACTCCTTCCGTTTCTTTTTA 57.572 33.333 0.00 0.00 0.00 1.52
869 870 8.155510 AGATTAGTACTCCTTCCGTTTCTTTTT 58.844 33.333 0.00 0.00 0.00 1.94
870 871 7.677892 AGATTAGTACTCCTTCCGTTTCTTTT 58.322 34.615 0.00 0.00 0.00 2.27
871 872 7.242322 AGATTAGTACTCCTTCCGTTTCTTT 57.758 36.000 0.00 0.00 0.00 2.52
872 873 6.854091 AGATTAGTACTCCTTCCGTTTCTT 57.146 37.500 0.00 0.00 0.00 2.52
873 874 7.951347 TTAGATTAGTACTCCTTCCGTTTCT 57.049 36.000 0.00 0.00 0.00 2.52
878 879 9.640963 CCAATTATTAGATTAGTACTCCTTCCG 57.359 37.037 0.00 0.00 0.00 4.30
931 932 1.102222 GCTGGTACGATCCGAGTCCT 61.102 60.000 0.00 0.00 0.00 3.85
1012 1014 0.518636 TGCTCGTTGCTTTCTGATGC 59.481 50.000 5.00 0.00 43.37 3.91
1019 1021 0.675633 AATGGCTTGCTCGTTGCTTT 59.324 45.000 5.00 0.00 43.37 3.51
1215 1227 0.465460 TTCTTCTTGTGCTTGGCCGT 60.465 50.000 0.00 0.00 0.00 5.68
1385 1415 2.985896 TCATCACGGGAAACTCCATTC 58.014 47.619 0.00 0.00 38.64 2.67
1398 1428 0.319900 CCTCCGCCCTTATCATCACG 60.320 60.000 0.00 0.00 0.00 4.35
1414 1444 3.227792 CTATCCGCCGAAGCCCCTC 62.228 68.421 0.00 0.00 34.57 4.30
1442 1472 3.198236 TTGCTTTGCTGCGTCCTGC 62.198 57.895 0.00 0.00 46.70 4.85
1494 1539 3.126073 CGAATTGCTGATTCCTCGATGA 58.874 45.455 7.50 0.00 40.92 2.92
1649 1697 1.473434 GGGAACTCGATGGTGTCATCC 60.473 57.143 0.00 0.00 45.20 3.51
1660 1708 0.243907 CTTCAGCGAAGGGAACTCGA 59.756 55.000 9.54 0.00 42.68 4.04
1727 1781 4.535526 AAGCCAAGCCGATTAACAAATT 57.464 36.364 0.00 0.00 0.00 1.82
1821 1891 4.201930 CGAGAGTAAGATACCACAGACCAC 60.202 50.000 0.00 0.00 0.00 4.16
1839 1909 9.751542 ATAGGTGATAATTTAAAGACACGAGAG 57.248 33.333 0.00 0.00 0.00 3.20
1917 1992 2.476852 TAATGCAGACTTGGCCGCCA 62.477 55.000 8.43 8.43 0.00 5.69
1959 2034 1.016130 CGTGTGGCTTCGCTCAGAAT 61.016 55.000 0.00 0.00 38.34 2.40
1961 2036 2.049156 CGTGTGGCTTCGCTCAGA 60.049 61.111 0.00 0.00 0.00 3.27
1982 2057 6.509418 TTTTGGTAGAATAAAGAAGCGCAT 57.491 33.333 11.47 0.00 0.00 4.73
2017 2092 5.689819 CGGGAACAAAACTCAATTAGTCAG 58.310 41.667 0.00 0.00 37.50 3.51
2025 2100 2.619646 GTTAGGCGGGAACAAAACTCAA 59.380 45.455 0.00 0.00 0.00 3.02
2201 2284 4.503714 TGTATGGAAGGGATTTCACTCC 57.496 45.455 0.00 0.00 37.54 3.85
2307 2393 2.297895 TGGAGCGGGCATGGTACTT 61.298 57.895 0.00 0.00 0.00 2.24
2417 2505 0.473755 AGTCTTGCATGTGGTGGACA 59.526 50.000 0.00 0.00 39.53 4.02
2516 2604 4.893524 TCCTTTCGAGCTACATATCTTCCA 59.106 41.667 0.00 0.00 0.00 3.53
2828 2917 8.962679 TGGATTAATAAAAATTGCCGTAGTCTT 58.037 29.630 0.00 0.00 0.00 3.01
2839 2928 9.008965 GTTTGCCCACTTGGATTAATAAAAATT 57.991 29.630 0.00 0.00 37.39 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.