Multiple sequence alignment - TraesCS2A01G358200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G358200 chr2A 100.000 2619 0 0 1 2619 602484088 602481470 0.000000e+00 4837
1 TraesCS2A01G358200 chr2A 97.647 255 5 1 364 617 653300484 653300230 1.110000e-118 436
2 TraesCS2A01G358200 chr2B 93.333 1785 97 15 728 2496 540709587 540707809 0.000000e+00 2617
3 TraesCS2A01G358200 chr2B 82.635 334 35 2 1 312 731726131 731725799 9.230000e-70 274
4 TraesCS2A01G358200 chr2B 82.335 334 35 3 1 312 483861894 483862225 4.300000e-68 268
5 TraesCS2A01G358200 chr2D 92.672 1774 93 21 738 2496 459315755 459314004 0.000000e+00 2521
6 TraesCS2A01G358200 chr6A 96.958 263 7 1 356 617 53260521 53260259 8.600000e-120 440
7 TraesCS2A01G358200 chr6A 96.183 262 9 1 364 624 31466233 31465972 6.700000e-116 427
8 TraesCS2A01G358200 chr3A 96.565 262 7 2 357 617 79442751 79443011 1.440000e-117 433
9 TraesCS2A01G358200 chr3A 96.183 262 9 1 358 618 7126932 7127193 6.700000e-116 427
10 TraesCS2A01G358200 chr3A 96.183 262 9 1 357 617 621895905 621896166 6.700000e-116 427
11 TraesCS2A01G358200 chr1A 96.212 264 9 1 355 617 571583372 571583109 5.180000e-117 431
12 TraesCS2A01G358200 chr5A 95.203 271 11 2 348 617 300648026 300647757 6.700000e-116 427
13 TraesCS2A01G358200 chr5A 94.891 274 12 2 353 625 566450278 566450006 6.700000e-116 427
14 TraesCS2A01G358200 chr5A 82.462 325 34 4 11 313 227343155 227343478 2.000000e-66 263
15 TraesCS2A01G358200 chr6B 84.431 334 29 2 1 312 713716715 713716383 9.100000e-80 307
16 TraesCS2A01G358200 chr6B 83.533 334 32 2 1 312 20078717 20078385 9.170000e-75 291
17 TraesCS2A01G358200 chr4B 84.478 335 26 3 1 313 621073381 621073711 9.100000e-80 307
18 TraesCS2A01G358200 chr4B 83.234 334 33 2 1 312 606852847 606852515 4.270000e-73 285
19 TraesCS2A01G358200 chr5B 81.890 381 39 5 1 359 438014064 438014436 7.090000e-76 294
20 TraesCS2A01G358200 chr5B 83.533 334 32 2 1 312 56822173 56822505 9.170000e-75 291
21 TraesCS2A01G358200 chr1B 82.635 334 35 2 1 312 642936854 642936522 9.230000e-70 274
22 TraesCS2A01G358200 chr1D 81.737 334 37 3 1 312 420645465 420645134 9.300000e-65 257
23 TraesCS2A01G358200 chr1D 79.641 334 30 6 1 312 7007725 7007408 3.420000e-49 206
24 TraesCS2A01G358200 chr7B 81.325 332 32 7 1 309 637667582 637667906 2.600000e-60 243
25 TraesCS2A01G358200 chr5D 94.681 94 4 1 9 102 11011246 11011154 7.550000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G358200 chr2A 602481470 602484088 2618 True 4837 4837 100.000 1 2619 1 chr2A.!!$R1 2618
1 TraesCS2A01G358200 chr2B 540707809 540709587 1778 True 2617 2617 93.333 728 2496 1 chr2B.!!$R1 1768
2 TraesCS2A01G358200 chr2D 459314004 459315755 1751 True 2521 2521 92.672 738 2496 1 chr2D.!!$R1 1758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 658 0.035881 ATGATGCTCCGCCCTATGTG 59.964 55.0 0.0 0.0 0.00 3.21 F
663 664 0.469917 CTCCGCCCTATGTGGTCAAT 59.530 55.0 0.0 0.0 45.41 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1478 0.251033 AAACCTCGTAACCCAAGGCC 60.251 55.0 0.00 0.00 33.21 5.19 R
1990 2007 0.251832 TTCAGAGCTCCGGGACTCTT 60.252 55.0 20.52 7.36 41.31 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.880157 ATTAAGATTAATGTTGATGCAAGCTTT 57.120 25.926 8.05 0.00 32.42 3.51
40 41 7.591006 AAGATTAATGTTGATGCAAGCTTTG 57.409 32.000 0.00 0.00 0.00 2.77
41 42 6.694447 AGATTAATGTTGATGCAAGCTTTGT 58.306 32.000 0.00 0.00 0.00 2.83
42 43 6.588756 AGATTAATGTTGATGCAAGCTTTGTG 59.411 34.615 0.00 0.00 0.00 3.33
43 44 2.512485 TGTTGATGCAAGCTTTGTGG 57.488 45.000 0.00 0.00 0.00 4.17
44 45 2.030371 TGTTGATGCAAGCTTTGTGGA 58.970 42.857 0.00 0.00 0.00 4.02
45 46 2.034939 TGTTGATGCAAGCTTTGTGGAG 59.965 45.455 0.00 0.00 0.00 3.86
46 47 2.275134 TGATGCAAGCTTTGTGGAGA 57.725 45.000 0.00 0.00 0.00 3.71
47 48 2.156917 TGATGCAAGCTTTGTGGAGAG 58.843 47.619 0.00 0.00 0.00 3.20
48 49 0.886563 ATGCAAGCTTTGTGGAGAGC 59.113 50.000 0.00 0.00 39.17 4.09
49 50 0.466007 TGCAAGCTTTGTGGAGAGCA 60.466 50.000 0.00 0.00 41.31 4.26
50 51 0.886563 GCAAGCTTTGTGGAGAGCAT 59.113 50.000 0.00 0.00 41.31 3.79
51 52 1.271656 GCAAGCTTTGTGGAGAGCATT 59.728 47.619 0.00 0.00 41.31 3.56
52 53 2.489329 GCAAGCTTTGTGGAGAGCATTA 59.511 45.455 0.00 0.00 41.31 1.90
53 54 3.427233 GCAAGCTTTGTGGAGAGCATTAG 60.427 47.826 0.00 0.00 41.31 1.73
54 55 2.363683 AGCTTTGTGGAGAGCATTAGC 58.636 47.619 0.00 0.00 41.31 3.09
71 72 3.367743 CGCTGCAAGTGTGGGCAT 61.368 61.111 0.00 0.00 40.27 4.40
72 73 2.260434 GCTGCAAGTGTGGGCATG 59.740 61.111 0.00 0.00 39.65 4.06
73 74 2.967397 CTGCAAGTGTGGGCATGG 59.033 61.111 0.00 0.00 39.65 3.66
74 75 1.904865 CTGCAAGTGTGGGCATGGT 60.905 57.895 0.00 0.00 39.65 3.55
75 76 2.149803 CTGCAAGTGTGGGCATGGTG 62.150 60.000 0.00 0.00 39.65 4.17
76 77 2.934570 GCAAGTGTGGGCATGGTGG 61.935 63.158 0.00 0.00 0.00 4.61
77 78 2.601367 AAGTGTGGGCATGGTGGC 60.601 61.111 0.00 0.00 42.88 5.01
85 86 2.034687 GCATGGTGGCCAGTGACT 59.965 61.111 5.11 0.00 36.75 3.41
86 87 2.042831 GCATGGTGGCCAGTGACTC 61.043 63.158 5.11 0.00 36.75 3.36
87 88 1.681666 CATGGTGGCCAGTGACTCT 59.318 57.895 5.11 0.00 36.75 3.24
88 89 0.037303 CATGGTGGCCAGTGACTCTT 59.963 55.000 5.11 0.00 36.75 2.85
89 90 0.326264 ATGGTGGCCAGTGACTCTTC 59.674 55.000 5.11 0.00 36.75 2.87
90 91 1.374758 GGTGGCCAGTGACTCTTCG 60.375 63.158 5.11 0.00 0.00 3.79
91 92 1.374758 GTGGCCAGTGACTCTTCGG 60.375 63.158 5.11 0.00 0.00 4.30
92 93 2.266055 GGCCAGTGACTCTTCGGG 59.734 66.667 0.00 0.00 0.00 5.14
93 94 2.266055 GCCAGTGACTCTTCGGGG 59.734 66.667 0.00 0.00 0.00 5.73
94 95 2.283529 GCCAGTGACTCTTCGGGGA 61.284 63.158 0.00 0.00 0.00 4.81
95 96 1.827399 GCCAGTGACTCTTCGGGGAA 61.827 60.000 0.00 0.00 0.00 3.97
96 97 0.247736 CCAGTGACTCTTCGGGGAAG 59.752 60.000 0.00 0.00 40.65 3.46
97 98 0.247736 CAGTGACTCTTCGGGGAAGG 59.752 60.000 5.61 0.20 39.82 3.46
98 99 0.178929 AGTGACTCTTCGGGGAAGGT 60.179 55.000 5.61 3.08 39.82 3.50
99 100 0.246910 GTGACTCTTCGGGGAAGGTC 59.753 60.000 14.60 14.60 39.82 3.85
100 101 0.903454 TGACTCTTCGGGGAAGGTCC 60.903 60.000 16.88 0.00 39.82 4.46
101 102 0.615261 GACTCTTCGGGGAAGGTCCT 60.615 60.000 5.61 0.00 39.82 3.85
102 103 0.905337 ACTCTTCGGGGAAGGTCCTG 60.905 60.000 5.61 0.00 39.82 3.86
103 104 1.612442 TCTTCGGGGAAGGTCCTGG 60.612 63.158 5.61 0.00 39.82 4.45
104 105 2.609610 TTCGGGGAAGGTCCTGGG 60.610 66.667 0.00 0.00 36.57 4.45
107 108 2.941583 GGGGAAGGTCCTGGGCTT 60.942 66.667 0.00 0.00 36.57 4.35
108 109 2.548547 GGGGAAGGTCCTGGGCTTT 61.549 63.158 0.00 0.00 36.57 3.51
109 110 1.304464 GGGAAGGTCCTGGGCTTTG 60.304 63.158 0.00 0.00 36.57 2.77
110 111 1.460699 GGAAGGTCCTGGGCTTTGT 59.539 57.895 0.00 0.00 32.53 2.83
111 112 0.696501 GGAAGGTCCTGGGCTTTGTA 59.303 55.000 0.00 0.00 32.53 2.41
112 113 1.074889 GGAAGGTCCTGGGCTTTGTAA 59.925 52.381 0.00 0.00 32.53 2.41
113 114 2.490168 GGAAGGTCCTGGGCTTTGTAAA 60.490 50.000 0.00 0.00 32.53 2.01
114 115 3.227614 GAAGGTCCTGGGCTTTGTAAAA 58.772 45.455 0.00 0.00 0.00 1.52
115 116 2.876581 AGGTCCTGGGCTTTGTAAAAG 58.123 47.619 0.00 0.00 0.00 2.27
116 117 1.272490 GGTCCTGGGCTTTGTAAAAGC 59.728 52.381 14.82 14.82 42.30 3.51
117 118 1.068541 GTCCTGGGCTTTGTAAAAGCG 60.069 52.381 16.20 5.18 43.89 4.68
118 119 0.958822 CCTGGGCTTTGTAAAAGCGT 59.041 50.000 16.20 0.00 43.89 5.07
119 120 1.335872 CCTGGGCTTTGTAAAAGCGTG 60.336 52.381 16.20 9.73 43.89 5.34
120 121 0.671251 TGGGCTTTGTAAAAGCGTGG 59.329 50.000 16.20 0.00 43.89 4.94
121 122 0.955905 GGGCTTTGTAAAAGCGTGGA 59.044 50.000 16.20 0.00 43.89 4.02
122 123 1.068541 GGGCTTTGTAAAAGCGTGGAG 60.069 52.381 16.20 0.00 43.89 3.86
123 124 1.068541 GGCTTTGTAAAAGCGTGGAGG 60.069 52.381 16.20 0.00 43.89 4.30
124 125 1.877443 GCTTTGTAAAAGCGTGGAGGA 59.123 47.619 8.80 0.00 33.20 3.71
125 126 2.095718 GCTTTGTAAAAGCGTGGAGGAG 60.096 50.000 8.80 0.00 33.20 3.69
126 127 2.178912 TTGTAAAAGCGTGGAGGAGG 57.821 50.000 0.00 0.00 0.00 4.30
127 128 0.321298 TGTAAAAGCGTGGAGGAGGC 60.321 55.000 0.00 0.00 35.57 4.70
128 129 1.079405 TAAAAGCGTGGAGGAGGCG 60.079 57.895 0.00 0.00 40.57 5.52
129 130 2.515996 TAAAAGCGTGGAGGAGGCGG 62.516 60.000 0.00 0.00 40.57 6.13
133 134 3.382832 CGTGGAGGAGGCGGAACT 61.383 66.667 0.00 0.00 0.00 3.01
134 135 2.579738 GTGGAGGAGGCGGAACTC 59.420 66.667 0.00 0.00 36.76 3.01
146 147 3.842869 GGAACTCCGAGCATGTCTT 57.157 52.632 0.00 0.00 0.00 3.01
147 148 1.363744 GGAACTCCGAGCATGTCTTG 58.636 55.000 0.00 0.00 0.00 3.02
215 216 8.918202 TGAAGATTTGACTATACTTTTGTGGT 57.082 30.769 0.00 0.00 0.00 4.16
216 217 9.349713 TGAAGATTTGACTATACTTTTGTGGTT 57.650 29.630 0.00 0.00 0.00 3.67
217 218 9.612620 GAAGATTTGACTATACTTTTGTGGTTG 57.387 33.333 0.00 0.00 0.00 3.77
218 219 7.593825 AGATTTGACTATACTTTTGTGGTTGC 58.406 34.615 0.00 0.00 0.00 4.17
219 220 5.351233 TTGACTATACTTTTGTGGTTGCG 57.649 39.130 0.00 0.00 0.00 4.85
220 221 4.382291 TGACTATACTTTTGTGGTTGCGT 58.618 39.130 0.00 0.00 0.00 5.24
221 222 4.449743 TGACTATACTTTTGTGGTTGCGTC 59.550 41.667 0.00 0.00 0.00 5.19
222 223 3.749609 ACTATACTTTTGTGGTTGCGTCC 59.250 43.478 0.00 0.00 0.00 4.79
223 224 1.310904 TACTTTTGTGGTTGCGTCCC 58.689 50.000 0.00 0.00 0.00 4.46
224 225 0.395173 ACTTTTGTGGTTGCGTCCCT 60.395 50.000 0.00 0.00 0.00 4.20
225 226 0.744281 CTTTTGTGGTTGCGTCCCTT 59.256 50.000 0.00 0.00 0.00 3.95
226 227 0.457851 TTTTGTGGTTGCGTCCCTTG 59.542 50.000 0.00 0.00 0.00 3.61
227 228 2.010582 TTTGTGGTTGCGTCCCTTGC 62.011 55.000 0.00 0.00 0.00 4.01
228 229 2.904866 GTGGTTGCGTCCCTTGCA 60.905 61.111 0.00 0.00 41.38 4.08
233 234 4.490696 TGCGTCCCTTGCAAATGA 57.509 50.000 0.00 0.00 39.87 2.57
234 235 2.725811 TGCGTCCCTTGCAAATGAA 58.274 47.368 0.00 0.00 39.87 2.57
235 236 1.035923 TGCGTCCCTTGCAAATGAAA 58.964 45.000 0.00 0.00 39.87 2.69
236 237 1.617850 TGCGTCCCTTGCAAATGAAAT 59.382 42.857 0.00 0.00 39.87 2.17
237 238 2.822561 TGCGTCCCTTGCAAATGAAATA 59.177 40.909 0.00 0.00 39.87 1.40
238 239 3.119531 TGCGTCCCTTGCAAATGAAATAG 60.120 43.478 0.00 0.00 39.87 1.73
239 240 3.438360 CGTCCCTTGCAAATGAAATAGC 58.562 45.455 0.00 0.00 0.00 2.97
240 241 3.129287 CGTCCCTTGCAAATGAAATAGCT 59.871 43.478 0.00 0.00 0.00 3.32
241 242 4.427312 GTCCCTTGCAAATGAAATAGCTG 58.573 43.478 0.00 0.00 0.00 4.24
242 243 4.158394 GTCCCTTGCAAATGAAATAGCTGA 59.842 41.667 0.00 0.00 0.00 4.26
243 244 4.158394 TCCCTTGCAAATGAAATAGCTGAC 59.842 41.667 0.00 0.00 0.00 3.51
244 245 4.082081 CCCTTGCAAATGAAATAGCTGACA 60.082 41.667 0.00 0.00 0.00 3.58
245 246 5.100259 CCTTGCAAATGAAATAGCTGACAG 58.900 41.667 0.00 0.00 0.00 3.51
246 247 4.707030 TGCAAATGAAATAGCTGACAGG 57.293 40.909 4.26 0.00 0.00 4.00
247 248 4.081406 TGCAAATGAAATAGCTGACAGGT 58.919 39.130 12.54 12.54 0.00 4.00
248 249 4.156556 TGCAAATGAAATAGCTGACAGGTC 59.843 41.667 11.11 0.00 0.00 3.85
249 250 4.439289 GCAAATGAAATAGCTGACAGGTCC 60.439 45.833 11.11 0.32 0.00 4.46
250 251 4.851639 AATGAAATAGCTGACAGGTCCT 57.148 40.909 11.11 0.00 0.00 3.85
251 252 3.895232 TGAAATAGCTGACAGGTCCTC 57.105 47.619 11.11 6.98 0.00 3.71
252 253 3.173151 TGAAATAGCTGACAGGTCCTCA 58.827 45.455 11.11 9.43 0.00 3.86
253 254 3.055819 TGAAATAGCTGACAGGTCCTCAC 60.056 47.826 11.11 1.68 0.00 3.51
254 255 2.541233 ATAGCTGACAGGTCCTCACT 57.459 50.000 11.11 0.00 0.00 3.41
255 256 1.550327 TAGCTGACAGGTCCTCACTG 58.450 55.000 11.11 0.00 41.64 3.66
256 257 1.190833 AGCTGACAGGTCCTCACTGG 61.191 60.000 0.07 0.00 40.23 4.00
257 258 1.294780 CTGACAGGTCCTCACTGGC 59.705 63.158 0.00 0.00 44.36 4.85
258 259 2.177594 CTGACAGGTCCTCACTGGCC 62.178 65.000 0.00 0.00 43.45 5.36
259 260 3.302347 GACAGGTCCTCACTGGCCG 62.302 68.421 0.00 0.00 38.04 6.13
260 261 2.997315 CAGGTCCTCACTGGCCGA 60.997 66.667 0.00 0.00 37.18 5.54
261 262 2.039624 AGGTCCTCACTGGCCGAT 59.960 61.111 0.00 0.00 37.18 4.18
262 263 1.613630 AGGTCCTCACTGGCCGATT 60.614 57.895 0.00 0.00 37.18 3.34
263 264 1.201429 AGGTCCTCACTGGCCGATTT 61.201 55.000 0.00 0.00 37.18 2.17
264 265 1.026718 GGTCCTCACTGGCCGATTTG 61.027 60.000 0.00 0.00 35.26 2.32
265 266 0.036388 GTCCTCACTGGCCGATTTGA 60.036 55.000 0.00 0.00 35.26 2.69
266 267 0.690192 TCCTCACTGGCCGATTTGAA 59.310 50.000 0.00 0.00 35.26 2.69
267 268 1.073125 TCCTCACTGGCCGATTTGAAA 59.927 47.619 0.00 0.00 35.26 2.69
268 269 1.885887 CCTCACTGGCCGATTTGAAAA 59.114 47.619 0.00 0.00 0.00 2.29
269 270 2.295909 CCTCACTGGCCGATTTGAAAAA 59.704 45.455 0.00 0.00 0.00 1.94
270 271 3.568538 CTCACTGGCCGATTTGAAAAAG 58.431 45.455 0.00 0.00 0.00 2.27
271 272 2.295909 TCACTGGCCGATTTGAAAAAGG 59.704 45.455 0.00 0.00 0.00 3.11
272 273 2.295909 CACTGGCCGATTTGAAAAAGGA 59.704 45.455 0.00 0.00 0.00 3.36
273 274 2.962421 ACTGGCCGATTTGAAAAAGGAA 59.038 40.909 0.00 0.00 0.00 3.36
274 275 3.578282 ACTGGCCGATTTGAAAAAGGAAT 59.422 39.130 0.00 0.00 0.00 3.01
275 276 4.176271 CTGGCCGATTTGAAAAAGGAATC 58.824 43.478 0.00 0.00 0.00 2.52
276 277 3.179048 GGCCGATTTGAAAAAGGAATCG 58.821 45.455 9.90 9.90 41.46 3.34
277 278 3.119637 GGCCGATTTGAAAAAGGAATCGA 60.120 43.478 16.47 0.00 43.64 3.59
278 279 4.098416 GCCGATTTGAAAAAGGAATCGAG 58.902 43.478 16.47 9.39 43.64 4.04
279 280 4.662145 CCGATTTGAAAAAGGAATCGAGG 58.338 43.478 16.47 0.89 43.64 4.63
280 281 4.394920 CCGATTTGAAAAAGGAATCGAGGA 59.605 41.667 16.47 0.00 43.64 3.71
281 282 5.447818 CCGATTTGAAAAAGGAATCGAGGAG 60.448 44.000 16.47 0.01 43.64 3.69
282 283 5.122396 CGATTTGAAAAAGGAATCGAGGAGT 59.878 40.000 11.07 0.00 43.64 3.85
283 284 6.348540 CGATTTGAAAAAGGAATCGAGGAGTT 60.349 38.462 11.07 0.00 43.64 3.01
284 285 6.709018 TTTGAAAAAGGAATCGAGGAGTTT 57.291 33.333 0.00 0.00 0.00 2.66
285 286 7.811117 TTTGAAAAAGGAATCGAGGAGTTTA 57.189 32.000 0.00 0.00 0.00 2.01
286 287 7.996098 TTGAAAAAGGAATCGAGGAGTTTAT 57.004 32.000 0.00 0.00 0.00 1.40
287 288 7.611213 TGAAAAAGGAATCGAGGAGTTTATC 57.389 36.000 0.00 0.00 0.00 1.75
288 289 7.165485 TGAAAAAGGAATCGAGGAGTTTATCA 58.835 34.615 0.00 0.00 0.00 2.15
289 290 7.663905 TGAAAAAGGAATCGAGGAGTTTATCAA 59.336 33.333 0.00 0.00 0.00 2.57
290 291 7.996098 AAAAGGAATCGAGGAGTTTATCAAA 57.004 32.000 0.00 0.00 0.00 2.69
291 292 7.617041 AAAGGAATCGAGGAGTTTATCAAAG 57.383 36.000 0.00 0.00 0.00 2.77
292 293 5.119694 AGGAATCGAGGAGTTTATCAAAGC 58.880 41.667 0.00 0.00 0.00 3.51
293 294 5.104735 AGGAATCGAGGAGTTTATCAAAGCT 60.105 40.000 0.00 0.00 0.00 3.74
294 295 5.586643 GGAATCGAGGAGTTTATCAAAGCTT 59.413 40.000 0.00 0.00 0.00 3.74
295 296 6.761714 GGAATCGAGGAGTTTATCAAAGCTTA 59.238 38.462 0.00 0.00 0.00 3.09
296 297 7.442666 GGAATCGAGGAGTTTATCAAAGCTTAT 59.557 37.037 0.00 0.00 0.00 1.73
297 298 9.477484 GAATCGAGGAGTTTATCAAAGCTTATA 57.523 33.333 0.00 0.00 0.00 0.98
298 299 9.832445 AATCGAGGAGTTTATCAAAGCTTATAA 57.168 29.630 0.00 0.00 0.00 0.98
299 300 9.832445 ATCGAGGAGTTTATCAAAGCTTATAAA 57.168 29.630 0.00 4.83 0.00 1.40
300 301 9.832445 TCGAGGAGTTTATCAAAGCTTATAAAT 57.168 29.630 14.51 6.88 31.99 1.40
326 327 8.702163 AAGTTTAAATATGCTAATGTTGTGGC 57.298 30.769 0.00 0.00 0.00 5.01
327 328 7.264947 AGTTTAAATATGCTAATGTTGTGGCC 58.735 34.615 0.00 0.00 0.00 5.36
328 329 4.670896 AAATATGCTAATGTTGTGGCCC 57.329 40.909 0.00 0.00 0.00 5.80
329 330 2.816777 TATGCTAATGTTGTGGCCCA 57.183 45.000 0.00 0.00 0.00 5.36
330 331 2.163810 ATGCTAATGTTGTGGCCCAT 57.836 45.000 0.00 0.00 0.00 4.00
331 332 2.816777 TGCTAATGTTGTGGCCCATA 57.183 45.000 0.00 0.00 0.00 2.74
332 333 3.311167 TGCTAATGTTGTGGCCCATAT 57.689 42.857 0.00 0.00 0.00 1.78
333 334 2.957680 TGCTAATGTTGTGGCCCATATG 59.042 45.455 0.00 0.00 0.00 1.78
334 335 3.221771 GCTAATGTTGTGGCCCATATGA 58.778 45.455 3.65 0.00 0.00 2.15
335 336 3.828451 GCTAATGTTGTGGCCCATATGAT 59.172 43.478 3.65 0.00 0.00 2.45
336 337 4.281688 GCTAATGTTGTGGCCCATATGATT 59.718 41.667 3.65 0.00 0.00 2.57
337 338 4.675976 AATGTTGTGGCCCATATGATTG 57.324 40.909 3.65 0.00 0.00 2.67
338 339 1.755959 TGTTGTGGCCCATATGATTGC 59.244 47.619 3.65 3.85 0.00 3.56
339 340 1.031235 TTGTGGCCCATATGATTGCG 58.969 50.000 3.65 0.00 0.00 4.85
340 341 0.182299 TGTGGCCCATATGATTGCGA 59.818 50.000 3.65 0.00 0.00 5.10
341 342 1.317613 GTGGCCCATATGATTGCGAA 58.682 50.000 3.65 0.00 0.00 4.70
342 343 1.267806 GTGGCCCATATGATTGCGAAG 59.732 52.381 3.65 0.00 0.00 3.79
343 344 1.133823 TGGCCCATATGATTGCGAAGT 60.134 47.619 3.65 0.00 0.00 3.01
344 345 1.956477 GGCCCATATGATTGCGAAGTT 59.044 47.619 3.65 0.00 0.00 2.66
345 346 2.362077 GGCCCATATGATTGCGAAGTTT 59.638 45.455 3.65 0.00 0.00 2.66
346 347 3.568007 GGCCCATATGATTGCGAAGTTTA 59.432 43.478 3.65 0.00 0.00 2.01
347 348 4.320494 GGCCCATATGATTGCGAAGTTTAG 60.320 45.833 3.65 0.00 0.00 1.85
348 349 4.787598 CCCATATGATTGCGAAGTTTAGC 58.212 43.478 3.65 0.00 0.00 3.09
349 350 4.516698 CCCATATGATTGCGAAGTTTAGCT 59.483 41.667 3.65 0.00 0.00 3.32
350 351 5.009010 CCCATATGATTGCGAAGTTTAGCTT 59.991 40.000 3.65 0.00 40.76 3.74
367 368 9.099454 AGTTTAGCTTCAATAATACTTTCTCCG 57.901 33.333 0.00 0.00 0.00 4.63
368 369 8.336080 GTTTAGCTTCAATAATACTTTCTCCGG 58.664 37.037 0.00 0.00 0.00 5.14
369 370 5.990668 AGCTTCAATAATACTTTCTCCGGT 58.009 37.500 0.00 0.00 0.00 5.28
370 371 6.049790 AGCTTCAATAATACTTTCTCCGGTC 58.950 40.000 0.00 0.00 0.00 4.79
371 372 5.236695 GCTTCAATAATACTTTCTCCGGTCC 59.763 44.000 0.00 0.00 0.00 4.46
372 373 6.555463 TTCAATAATACTTTCTCCGGTCCT 57.445 37.500 0.00 0.00 0.00 3.85
373 374 6.555463 TCAATAATACTTTCTCCGGTCCTT 57.445 37.500 0.00 0.00 0.00 3.36
374 375 6.954232 TCAATAATACTTTCTCCGGTCCTTT 58.046 36.000 0.00 0.00 0.00 3.11
375 376 7.399634 TCAATAATACTTTCTCCGGTCCTTTT 58.600 34.615 0.00 0.00 0.00 2.27
376 377 7.886446 TCAATAATACTTTCTCCGGTCCTTTTT 59.114 33.333 0.00 0.00 0.00 1.94
377 378 9.169592 CAATAATACTTTCTCCGGTCCTTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
378 379 8.728337 ATAATACTTTCTCCGGTCCTTTTTAC 57.272 34.615 0.00 0.00 0.00 2.01
379 380 4.701651 ACTTTCTCCGGTCCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
380 381 4.639334 ACTTTCTCCGGTCCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
381 382 4.347292 ACTTTCTCCGGTCCTTTTTACTCT 59.653 41.667 0.00 0.00 0.00 3.24
382 383 3.955650 TCTCCGGTCCTTTTTACTCTG 57.044 47.619 0.00 0.00 0.00 3.35
383 384 2.028385 TCTCCGGTCCTTTTTACTCTGC 60.028 50.000 0.00 0.00 0.00 4.26
384 385 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
385 386 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
386 387 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
387 388 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
388 389 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
389 390 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
390 391 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
391 392 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
392 393 7.494625 CGGTCCTTTTTACTCTGCATATTAGAA 59.505 37.037 0.00 0.00 0.00 2.10
393 394 9.343539 GGTCCTTTTTACTCTGCATATTAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
403 404 8.703743 ACTCTGCATATTAGAATTCTCTGAAGT 58.296 33.333 12.24 7.56 32.70 3.01
404 405 9.195411 CTCTGCATATTAGAATTCTCTGAAGTC 57.805 37.037 12.24 0.25 32.70 3.01
405 406 8.699130 TCTGCATATTAGAATTCTCTGAAGTCA 58.301 33.333 12.24 3.02 32.70 3.41
406 407 9.322773 CTGCATATTAGAATTCTCTGAAGTCAA 57.677 33.333 12.24 0.00 32.70 3.18
407 408 9.671279 TGCATATTAGAATTCTCTGAAGTCAAA 57.329 29.630 12.24 0.00 32.70 2.69
408 409 9.928236 GCATATTAGAATTCTCTGAAGTCAAAC 57.072 33.333 12.24 0.00 32.70 2.93
499 500 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
500 501 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
501 502 9.725019 TGAAACTTTAAGTCATGACACATCTAT 57.275 29.630 27.02 7.36 0.00 1.98
504 505 9.725019 AACTTTAAGTCATGACACATCTATTGA 57.275 29.630 27.02 5.47 0.00 2.57
505 506 9.896645 ACTTTAAGTCATGACACATCTATTGAT 57.103 29.630 27.02 0.00 0.00 2.57
530 531 9.811995 ATATTGATTTCAGATTGTGAATGTTGG 57.188 29.630 0.00 0.00 44.89 3.77
531 532 6.653526 TGATTTCAGATTGTGAATGTTGGT 57.346 33.333 0.00 0.00 44.89 3.67
532 533 7.757941 TGATTTCAGATTGTGAATGTTGGTA 57.242 32.000 0.00 0.00 44.89 3.25
533 534 8.352137 TGATTTCAGATTGTGAATGTTGGTAT 57.648 30.769 0.00 0.00 44.89 2.73
534 535 8.805175 TGATTTCAGATTGTGAATGTTGGTATT 58.195 29.630 0.00 0.00 44.89 1.89
535 536 9.643693 GATTTCAGATTGTGAATGTTGGTATTT 57.356 29.630 0.00 0.00 44.89 1.40
537 538 9.829507 TTTCAGATTGTGAATGTTGGTATTTTT 57.170 25.926 0.00 0.00 44.89 1.94
566 567 3.263602 GTTGGTCAAACTTTACGAGGC 57.736 47.619 0.00 0.00 35.75 4.70
567 568 2.876550 GTTGGTCAAACTTTACGAGGCT 59.123 45.455 0.00 0.00 35.75 4.58
568 569 3.202829 TGGTCAAACTTTACGAGGCTT 57.797 42.857 0.00 0.00 0.00 4.35
569 570 2.875933 TGGTCAAACTTTACGAGGCTTG 59.124 45.455 0.00 0.00 0.00 4.01
570 571 3.135994 GGTCAAACTTTACGAGGCTTGA 58.864 45.455 9.20 0.00 32.24 3.02
571 572 3.059120 GGTCAAACTTTACGAGGCTTGAC 60.059 47.826 9.20 5.19 44.00 3.18
572 573 3.808174 GTCAAACTTTACGAGGCTTGACT 59.192 43.478 9.20 0.00 42.80 3.41
573 574 4.272748 GTCAAACTTTACGAGGCTTGACTT 59.727 41.667 9.20 0.00 42.80 3.01
574 575 4.510340 TCAAACTTTACGAGGCTTGACTTC 59.490 41.667 9.20 0.00 30.70 3.01
575 576 3.746045 ACTTTACGAGGCTTGACTTCA 57.254 42.857 9.20 0.00 0.00 3.02
576 577 3.654414 ACTTTACGAGGCTTGACTTCAG 58.346 45.455 9.20 0.00 0.00 3.02
577 578 3.069729 ACTTTACGAGGCTTGACTTCAGT 59.930 43.478 9.20 0.34 0.00 3.41
578 579 3.746045 TTACGAGGCTTGACTTCAGTT 57.254 42.857 9.20 0.00 0.00 3.16
579 580 4.859304 TTACGAGGCTTGACTTCAGTTA 57.141 40.909 9.20 0.00 0.00 2.24
580 581 3.746045 ACGAGGCTTGACTTCAGTTAA 57.254 42.857 9.20 0.00 0.00 2.01
581 582 4.067972 ACGAGGCTTGACTTCAGTTAAA 57.932 40.909 9.20 0.00 0.00 1.52
582 583 4.642429 ACGAGGCTTGACTTCAGTTAAAT 58.358 39.130 9.20 0.00 0.00 1.40
583 584 4.691216 ACGAGGCTTGACTTCAGTTAAATC 59.309 41.667 9.20 0.00 0.00 2.17
584 585 4.932200 CGAGGCTTGACTTCAGTTAAATCT 59.068 41.667 0.00 0.00 0.00 2.40
585 586 5.409826 CGAGGCTTGACTTCAGTTAAATCTT 59.590 40.000 0.00 0.00 0.00 2.40
586 587 6.590292 CGAGGCTTGACTTCAGTTAAATCTTA 59.410 38.462 0.00 0.00 0.00 2.10
587 588 7.278868 CGAGGCTTGACTTCAGTTAAATCTTAT 59.721 37.037 0.00 0.00 0.00 1.73
588 589 9.601217 GAGGCTTGACTTCAGTTAAATCTTATA 57.399 33.333 0.00 0.00 0.00 0.98
591 592 9.657121 GCTTGACTTCAGTTAAATCTTATATGC 57.343 33.333 0.00 0.00 0.00 3.14
592 593 9.855361 CTTGACTTCAGTTAAATCTTATATGCG 57.145 33.333 0.00 0.00 0.00 4.73
593 594 9.594478 TTGACTTCAGTTAAATCTTATATGCGA 57.406 29.630 0.00 0.00 0.00 5.10
594 595 9.594478 TGACTTCAGTTAAATCTTATATGCGAA 57.406 29.630 0.00 0.00 0.00 4.70
595 596 9.851043 GACTTCAGTTAAATCTTATATGCGAAC 57.149 33.333 0.00 0.00 0.00 3.95
596 597 9.601217 ACTTCAGTTAAATCTTATATGCGAACT 57.399 29.630 0.00 0.00 0.00 3.01
606 607 7.781548 TCTTATATGCGAACTAAAAAGGACC 57.218 36.000 0.00 0.00 0.00 4.46
607 608 6.477688 TCTTATATGCGAACTAAAAAGGACCG 59.522 38.462 0.00 0.00 0.00 4.79
608 609 1.515081 TGCGAACTAAAAAGGACCGG 58.485 50.000 0.00 0.00 0.00 5.28
609 610 1.070445 TGCGAACTAAAAAGGACCGGA 59.930 47.619 9.46 0.00 0.00 5.14
610 611 1.730612 GCGAACTAAAAAGGACCGGAG 59.269 52.381 9.46 0.00 0.00 4.63
624 625 3.776196 CGGAGGGAGTAGATGGGAT 57.224 57.895 0.00 0.00 0.00 3.85
625 626 1.261480 CGGAGGGAGTAGATGGGATG 58.739 60.000 0.00 0.00 0.00 3.51
626 627 1.650528 GGAGGGAGTAGATGGGATGG 58.349 60.000 0.00 0.00 0.00 3.51
627 628 1.132689 GGAGGGAGTAGATGGGATGGT 60.133 57.143 0.00 0.00 0.00 3.55
628 629 2.111972 GGAGGGAGTAGATGGGATGGTA 59.888 54.545 0.00 0.00 0.00 3.25
629 630 3.246167 GGAGGGAGTAGATGGGATGGTAT 60.246 52.174 0.00 0.00 0.00 2.73
630 631 4.430441 GAGGGAGTAGATGGGATGGTATT 58.570 47.826 0.00 0.00 0.00 1.89
631 632 4.430441 AGGGAGTAGATGGGATGGTATTC 58.570 47.826 0.00 0.00 0.00 1.75
632 633 4.110426 AGGGAGTAGATGGGATGGTATTCT 59.890 45.833 0.00 0.00 0.00 2.40
633 634 4.846940 GGGAGTAGATGGGATGGTATTCTT 59.153 45.833 0.00 0.00 0.00 2.52
634 635 5.280215 GGGAGTAGATGGGATGGTATTCTTG 60.280 48.000 0.00 0.00 0.00 3.02
635 636 5.308237 GGAGTAGATGGGATGGTATTCTTGT 59.692 44.000 0.00 0.00 0.00 3.16
636 637 6.183361 GGAGTAGATGGGATGGTATTCTTGTT 60.183 42.308 0.00 0.00 0.00 2.83
637 638 7.016268 GGAGTAGATGGGATGGTATTCTTGTTA 59.984 40.741 0.00 0.00 0.00 2.41
638 639 8.331931 AGTAGATGGGATGGTATTCTTGTTAA 57.668 34.615 0.00 0.00 0.00 2.01
639 640 8.949421 AGTAGATGGGATGGTATTCTTGTTAAT 58.051 33.333 0.00 0.00 0.00 1.40
640 641 9.003658 GTAGATGGGATGGTATTCTTGTTAATG 57.996 37.037 0.00 0.00 0.00 1.90
641 642 7.815383 AGATGGGATGGTATTCTTGTTAATGA 58.185 34.615 0.00 0.00 0.00 2.57
642 643 8.451245 AGATGGGATGGTATTCTTGTTAATGAT 58.549 33.333 0.00 0.00 0.00 2.45
643 644 7.822161 TGGGATGGTATTCTTGTTAATGATG 57.178 36.000 0.00 0.00 0.00 3.07
644 645 6.265196 TGGGATGGTATTCTTGTTAATGATGC 59.735 38.462 0.00 0.00 0.00 3.91
645 646 6.491403 GGGATGGTATTCTTGTTAATGATGCT 59.509 38.462 0.00 0.00 0.00 3.79
646 647 7.308830 GGGATGGTATTCTTGTTAATGATGCTC 60.309 40.741 0.00 0.00 0.00 4.26
647 648 6.942532 TGGTATTCTTGTTAATGATGCTCC 57.057 37.500 0.00 0.00 0.00 4.70
648 649 5.527214 TGGTATTCTTGTTAATGATGCTCCG 59.473 40.000 0.00 0.00 0.00 4.63
649 650 4.558538 ATTCTTGTTAATGATGCTCCGC 57.441 40.909 0.00 0.00 0.00 5.54
650 651 2.288666 TCTTGTTAATGATGCTCCGCC 58.711 47.619 0.00 0.00 0.00 6.13
651 652 1.334869 CTTGTTAATGATGCTCCGCCC 59.665 52.381 0.00 0.00 0.00 6.13
652 653 0.546122 TGTTAATGATGCTCCGCCCT 59.454 50.000 0.00 0.00 0.00 5.19
653 654 1.765904 TGTTAATGATGCTCCGCCCTA 59.234 47.619 0.00 0.00 0.00 3.53
654 655 2.371841 TGTTAATGATGCTCCGCCCTAT 59.628 45.455 0.00 0.00 0.00 2.57
655 656 2.744202 GTTAATGATGCTCCGCCCTATG 59.256 50.000 0.00 0.00 0.00 2.23
656 657 0.767375 AATGATGCTCCGCCCTATGT 59.233 50.000 0.00 0.00 0.00 2.29
657 658 0.035881 ATGATGCTCCGCCCTATGTG 59.964 55.000 0.00 0.00 0.00 3.21
658 659 1.302033 GATGCTCCGCCCTATGTGG 60.302 63.158 0.00 0.00 46.66 4.17
659 660 2.044806 GATGCTCCGCCCTATGTGGT 62.045 60.000 0.00 0.00 45.41 4.16
660 661 2.044806 ATGCTCCGCCCTATGTGGTC 62.045 60.000 0.00 0.00 45.41 4.02
661 662 2.731571 GCTCCGCCCTATGTGGTCA 61.732 63.158 0.00 0.00 45.41 4.02
662 663 1.904771 CTCCGCCCTATGTGGTCAA 59.095 57.895 0.00 0.00 45.41 3.18
663 664 0.469917 CTCCGCCCTATGTGGTCAAT 59.530 55.000 0.00 0.00 45.41 2.57
664 665 0.916086 TCCGCCCTATGTGGTCAATT 59.084 50.000 0.00 0.00 45.41 2.32
665 666 1.283613 TCCGCCCTATGTGGTCAATTT 59.716 47.619 0.00 0.00 45.41 1.82
666 667 2.099405 CCGCCCTATGTGGTCAATTTT 58.901 47.619 0.00 0.00 39.95 1.82
667 668 3.054287 TCCGCCCTATGTGGTCAATTTTA 60.054 43.478 0.00 0.00 45.41 1.52
668 669 3.888930 CCGCCCTATGTGGTCAATTTTAT 59.111 43.478 0.00 0.00 39.95 1.40
669 670 5.067273 CCGCCCTATGTGGTCAATTTTATA 58.933 41.667 0.00 0.00 39.95 0.98
670 671 5.533154 CCGCCCTATGTGGTCAATTTTATAA 59.467 40.000 0.00 0.00 39.95 0.98
671 672 6.208599 CCGCCCTATGTGGTCAATTTTATAAT 59.791 38.462 0.00 0.00 39.95 1.28
672 673 7.083858 CGCCCTATGTGGTCAATTTTATAATG 58.916 38.462 0.00 0.00 0.00 1.90
673 674 7.040755 CGCCCTATGTGGTCAATTTTATAATGA 60.041 37.037 0.00 0.00 0.00 2.57
674 675 8.637986 GCCCTATGTGGTCAATTTTATAATGAA 58.362 33.333 0.00 0.00 0.00 2.57
680 681 9.949174 TGTGGTCAATTTTATAATGAATGATCG 57.051 29.630 0.00 0.00 0.00 3.69
681 682 9.950680 GTGGTCAATTTTATAATGAATGATCGT 57.049 29.630 0.00 0.00 0.00 3.73
780 782 6.667007 AGAAAAACAAATGACAAGCTTTGG 57.333 33.333 0.00 0.00 36.81 3.28
803 805 0.670162 ACACATCAGCTTTGGTGCAC 59.330 50.000 8.80 8.80 34.69 4.57
811 813 1.369209 CTTTGGTGCACGCAGTTCG 60.369 57.895 11.45 0.00 41.61 3.95
963 965 0.692419 TCTCCATTCCCTCTGCTCCC 60.692 60.000 0.00 0.00 0.00 4.30
982 984 2.490903 CCCTCTCAATTCCAAGCACTTG 59.509 50.000 3.32 3.32 40.13 3.16
983 985 3.152341 CCTCTCAATTCCAAGCACTTGT 58.848 45.455 9.41 0.00 38.85 3.16
985 987 3.149196 TCTCAATTCCAAGCACTTGTCC 58.851 45.455 9.41 0.00 38.85 4.02
1011 1013 0.890542 AAGCCAAGATGAACAGCGCA 60.891 50.000 11.47 0.00 0.00 6.09
1473 1478 0.959553 TAAGCTAGCTCCCCGAATCG 59.040 55.000 19.65 0.00 0.00 3.34
1508 1515 1.202521 GGTTTCTGTTGGCTTGGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
1564 1571 3.050275 AGGAAGTTCAAGGCGCGC 61.050 61.111 25.94 25.94 0.00 6.86
1606 1613 0.535328 CCCTGCTCCAGATGATGCTG 60.535 60.000 0.00 0.00 32.44 4.41
1673 1685 1.721926 CCGCGACTTCTTGTTCTTCTC 59.278 52.381 8.23 0.00 0.00 2.87
1685 1697 9.837525 CTTCTTGTTCTTCTCTTTGATTATTGG 57.162 33.333 0.00 0.00 0.00 3.16
1699 1715 1.990799 TATTGGTGAGTTCGAGCGTG 58.009 50.000 0.00 0.00 0.00 5.34
1751 1767 3.317711 TGGTTTGTAAGTTGCCTGTCATG 59.682 43.478 0.00 0.00 0.00 3.07
1752 1768 3.317993 GGTTTGTAAGTTGCCTGTCATGT 59.682 43.478 0.00 0.00 0.00 3.21
1753 1769 4.517453 GGTTTGTAAGTTGCCTGTCATGTA 59.483 41.667 0.00 0.00 0.00 2.29
1754 1770 5.449304 GTTTGTAAGTTGCCTGTCATGTAC 58.551 41.667 0.00 0.00 0.00 2.90
1755 1771 4.617253 TGTAAGTTGCCTGTCATGTACT 57.383 40.909 0.00 0.00 0.00 2.73
1791 1807 7.996644 ACCAGTTAAGTTTCTCCATTCAGTTTA 59.003 33.333 0.00 0.00 0.00 2.01
1844 1860 1.156736 CAACCCATCTGACACGGTTC 58.843 55.000 2.76 0.00 36.45 3.62
1870 1886 3.319755 TGGAATCGTAACGAACCTGAAC 58.680 45.455 0.24 0.00 39.99 3.18
1873 1889 4.483311 GAATCGTAACGAACCTGAACTCT 58.517 43.478 0.00 0.00 39.99 3.24
1877 1893 3.549423 CGTAACGAACCTGAACTCTGACA 60.549 47.826 0.00 0.00 0.00 3.58
1906 1922 3.888930 CCACCCTGCAATTCCGTTATAAT 59.111 43.478 0.00 0.00 0.00 1.28
1907 1923 4.023193 CCACCCTGCAATTCCGTTATAATC 60.023 45.833 0.00 0.00 0.00 1.75
1912 1928 5.304686 TGCAATTCCGTTATAATCTCCCT 57.695 39.130 0.00 0.00 0.00 4.20
1927 1943 4.395519 CCTGTGGGAATCGCAACA 57.604 55.556 0.36 2.39 35.20 3.33
1954 1970 2.175811 GCGCCGGATCAACAACAC 59.824 61.111 5.05 0.00 0.00 3.32
1961 1977 1.600023 GGATCAACAACACCCGACAA 58.400 50.000 0.00 0.00 0.00 3.18
1963 1979 2.359531 GGATCAACAACACCCGACAAAA 59.640 45.455 0.00 0.00 0.00 2.44
1983 2000 0.601841 TCGACTTTCAAGTTCGGCCC 60.602 55.000 0.00 0.00 39.88 5.80
2237 2258 2.770132 ATCGCAGCAGCAGTTCACGA 62.770 55.000 0.82 0.00 42.27 4.35
2400 2421 8.135382 TCATAGCTTAAGTTCAGAAACTACCT 57.865 34.615 4.02 0.00 45.07 3.08
2452 2477 3.370978 TGTTTGAAGCGCTAGATAGTTGC 59.629 43.478 12.05 0.00 0.00 4.17
2459 2484 3.632604 AGCGCTAGATAGTTGCAACTAGA 59.367 43.478 35.23 24.35 44.06 2.43
2460 2485 3.978217 GCGCTAGATAGTTGCAACTAGAG 59.022 47.826 35.23 30.35 44.06 2.43
2464 2489 3.791245 AGATAGTTGCAACTAGAGCTGC 58.209 45.455 35.23 22.12 44.06 5.25
2472 2497 4.186926 TGCAACTAGAGCTGCAATCTTAG 58.813 43.478 13.85 5.41 43.23 2.18
2474 2499 4.125703 CAACTAGAGCTGCAATCTTAGGG 58.874 47.826 1.02 0.00 0.00 3.53
2478 2503 0.471617 AGCTGCAATCTTAGGGCGAT 59.528 50.000 1.02 0.00 0.00 4.58
2480 2505 2.304180 AGCTGCAATCTTAGGGCGATAT 59.696 45.455 1.02 0.00 0.00 1.63
2536 2561 8.677148 TTAGAGACAATGGGATAAACTAATGC 57.323 34.615 0.00 0.00 0.00 3.56
2537 2562 5.760253 AGAGACAATGGGATAAACTAATGCG 59.240 40.000 0.00 0.00 0.00 4.73
2538 2563 4.821805 AGACAATGGGATAAACTAATGCGG 59.178 41.667 0.00 0.00 0.00 5.69
2539 2564 4.787551 ACAATGGGATAAACTAATGCGGA 58.212 39.130 0.00 0.00 0.00 5.54
2540 2565 4.821805 ACAATGGGATAAACTAATGCGGAG 59.178 41.667 0.00 0.00 0.00 4.63
2541 2566 4.974645 ATGGGATAAACTAATGCGGAGA 57.025 40.909 0.00 0.00 0.00 3.71
2542 2567 4.974645 TGGGATAAACTAATGCGGAGAT 57.025 40.909 0.00 0.00 0.00 2.75
2543 2568 6.620877 ATGGGATAAACTAATGCGGAGATA 57.379 37.500 0.00 0.00 0.00 1.98
2544 2569 5.790593 TGGGATAAACTAATGCGGAGATAC 58.209 41.667 0.00 0.00 0.00 2.24
2545 2570 5.305902 TGGGATAAACTAATGCGGAGATACA 59.694 40.000 0.00 0.00 0.00 2.29
2546 2571 5.638234 GGGATAAACTAATGCGGAGATACAC 59.362 44.000 0.00 0.00 0.00 2.90
2547 2572 6.220930 GGATAAACTAATGCGGAGATACACA 58.779 40.000 0.00 0.00 0.00 3.72
2548 2573 6.704493 GGATAAACTAATGCGGAGATACACAA 59.296 38.462 0.00 0.00 0.00 3.33
2549 2574 7.225931 GGATAAACTAATGCGGAGATACACAAA 59.774 37.037 0.00 0.00 0.00 2.83
2550 2575 6.811253 AAACTAATGCGGAGATACACAAAA 57.189 33.333 0.00 0.00 0.00 2.44
2551 2576 6.811253 AACTAATGCGGAGATACACAAAAA 57.189 33.333 0.00 0.00 0.00 1.94
2576 2601 9.971922 AAATTCTCATAAAAAGAACCTGAACAG 57.028 29.630 0.00 0.00 35.68 3.16
2577 2602 6.560253 TCTCATAAAAAGAACCTGAACAGC 57.440 37.500 0.00 0.00 0.00 4.40
2578 2603 6.061441 TCTCATAAAAAGAACCTGAACAGCA 58.939 36.000 0.00 0.00 0.00 4.41
2579 2604 6.205464 TCTCATAAAAAGAACCTGAACAGCAG 59.795 38.462 0.00 0.00 44.49 4.24
2597 2622 3.320626 GCAGGATGGTTCTTTTCTTTGC 58.679 45.455 0.00 0.00 35.86 3.68
2598 2623 3.243839 GCAGGATGGTTCTTTTCTTTGCA 60.244 43.478 0.00 0.00 35.86 4.08
2599 2624 4.553323 CAGGATGGTTCTTTTCTTTGCAG 58.447 43.478 0.00 0.00 0.00 4.41
2600 2625 3.006217 AGGATGGTTCTTTTCTTTGCAGC 59.994 43.478 0.00 0.00 0.00 5.25
2601 2626 3.006217 GGATGGTTCTTTTCTTTGCAGCT 59.994 43.478 0.00 0.00 0.00 4.24
2602 2627 4.218417 GGATGGTTCTTTTCTTTGCAGCTA 59.782 41.667 0.00 0.00 0.00 3.32
2603 2628 5.278957 GGATGGTTCTTTTCTTTGCAGCTAA 60.279 40.000 0.00 0.00 0.00 3.09
2604 2629 4.932146 TGGTTCTTTTCTTTGCAGCTAAC 58.068 39.130 0.00 0.00 0.00 2.34
2605 2630 4.400884 TGGTTCTTTTCTTTGCAGCTAACA 59.599 37.500 0.00 0.00 0.00 2.41
2606 2631 4.978580 GGTTCTTTTCTTTGCAGCTAACAG 59.021 41.667 0.00 0.00 0.00 3.16
2607 2632 5.450550 GGTTCTTTTCTTTGCAGCTAACAGT 60.451 40.000 0.00 0.00 0.00 3.55
2608 2633 5.173774 TCTTTTCTTTGCAGCTAACAGTG 57.826 39.130 0.00 0.00 0.00 3.66
2609 2634 3.988379 TTTCTTTGCAGCTAACAGTGG 57.012 42.857 0.00 0.00 0.00 4.00
2610 2635 2.638480 TCTTTGCAGCTAACAGTGGT 57.362 45.000 0.00 0.00 0.00 4.16
2611 2636 2.221169 TCTTTGCAGCTAACAGTGGTG 58.779 47.619 0.00 0.00 36.18 4.17
2612 2637 2.158827 TCTTTGCAGCTAACAGTGGTGA 60.159 45.455 0.00 0.00 35.20 4.02
2613 2638 2.566833 TTGCAGCTAACAGTGGTGAT 57.433 45.000 0.00 0.00 35.20 3.06
2614 2639 2.566833 TGCAGCTAACAGTGGTGATT 57.433 45.000 0.00 0.00 35.20 2.57
2615 2640 2.426522 TGCAGCTAACAGTGGTGATTC 58.573 47.619 0.00 0.00 35.20 2.52
2616 2641 1.740025 GCAGCTAACAGTGGTGATTCC 59.260 52.381 0.00 0.00 35.20 3.01
2617 2642 2.359900 CAGCTAACAGTGGTGATTCCC 58.640 52.381 0.00 0.00 35.20 3.97
2618 2643 1.066143 AGCTAACAGTGGTGATTCCCG 60.066 52.381 0.00 0.00 34.77 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.880157 AAAGCTTGCATCAACATTAATCTTAAT 57.120 25.926 0.00 0.00 33.82 1.40
14 15 9.142515 CAAAGCTTGCATCAACATTAATCTTAA 57.857 29.630 0.00 0.00 0.00 1.85
15 16 8.306038 ACAAAGCTTGCATCAACATTAATCTTA 58.694 29.630 0.00 0.00 0.00 2.10
16 17 7.117236 CACAAAGCTTGCATCAACATTAATCTT 59.883 33.333 0.00 0.00 0.00 2.40
17 18 6.588756 CACAAAGCTTGCATCAACATTAATCT 59.411 34.615 0.00 0.00 0.00 2.40
18 19 6.183360 CCACAAAGCTTGCATCAACATTAATC 60.183 38.462 0.00 0.00 0.00 1.75
19 20 5.640357 CCACAAAGCTTGCATCAACATTAAT 59.360 36.000 0.00 0.00 0.00 1.40
20 21 4.989797 CCACAAAGCTTGCATCAACATTAA 59.010 37.500 0.00 0.00 0.00 1.40
21 22 4.280425 TCCACAAAGCTTGCATCAACATTA 59.720 37.500 0.00 0.00 0.00 1.90
22 23 3.069872 TCCACAAAGCTTGCATCAACATT 59.930 39.130 0.00 0.00 0.00 2.71
23 24 2.629137 TCCACAAAGCTTGCATCAACAT 59.371 40.909 0.00 0.00 0.00 2.71
24 25 2.030371 TCCACAAAGCTTGCATCAACA 58.970 42.857 0.00 0.00 0.00 3.33
25 26 2.294233 TCTCCACAAAGCTTGCATCAAC 59.706 45.455 0.00 0.00 0.00 3.18
26 27 2.555325 CTCTCCACAAAGCTTGCATCAA 59.445 45.455 0.00 0.00 0.00 2.57
27 28 2.156917 CTCTCCACAAAGCTTGCATCA 58.843 47.619 0.00 0.00 0.00 3.07
28 29 1.135460 GCTCTCCACAAAGCTTGCATC 60.135 52.381 0.00 0.00 35.60 3.91
29 30 0.886563 GCTCTCCACAAAGCTTGCAT 59.113 50.000 0.00 0.00 35.60 3.96
30 31 0.466007 TGCTCTCCACAAAGCTTGCA 60.466 50.000 0.00 0.00 39.31 4.08
31 32 0.886563 ATGCTCTCCACAAAGCTTGC 59.113 50.000 0.00 0.00 39.31 4.01
32 33 3.427233 GCTAATGCTCTCCACAAAGCTTG 60.427 47.826 0.00 0.00 39.31 4.01
33 34 2.751806 GCTAATGCTCTCCACAAAGCTT 59.248 45.455 0.00 0.00 39.31 3.74
34 35 2.363683 GCTAATGCTCTCCACAAAGCT 58.636 47.619 0.00 0.00 39.31 3.74
35 36 1.063174 CGCTAATGCTCTCCACAAAGC 59.937 52.381 0.00 0.00 39.02 3.51
36 37 1.063174 GCGCTAATGCTCTCCACAAAG 59.937 52.381 0.00 0.00 36.97 2.77
37 38 1.086696 GCGCTAATGCTCTCCACAAA 58.913 50.000 0.00 0.00 36.97 2.83
38 39 0.250234 AGCGCTAATGCTCTCCACAA 59.750 50.000 8.99 0.00 42.95 3.33
39 40 0.460811 CAGCGCTAATGCTCTCCACA 60.461 55.000 10.99 0.00 45.23 4.17
40 41 1.770085 GCAGCGCTAATGCTCTCCAC 61.770 60.000 10.99 0.00 45.23 4.02
41 42 1.522355 GCAGCGCTAATGCTCTCCA 60.522 57.895 10.99 0.00 45.23 3.86
42 43 1.091771 TTGCAGCGCTAATGCTCTCC 61.092 55.000 19.22 0.00 45.23 3.71
43 44 0.304098 CTTGCAGCGCTAATGCTCTC 59.696 55.000 19.22 0.00 45.23 3.20
44 45 0.392193 ACTTGCAGCGCTAATGCTCT 60.392 50.000 19.22 1.26 45.23 4.09
45 46 0.247974 CACTTGCAGCGCTAATGCTC 60.248 55.000 19.22 2.53 45.23 4.26
47 48 0.795735 CACACTTGCAGCGCTAATGC 60.796 55.000 10.99 12.06 44.11 3.56
48 49 0.179181 CCACACTTGCAGCGCTAATG 60.179 55.000 10.99 6.80 0.00 1.90
49 50 1.308069 CCCACACTTGCAGCGCTAAT 61.308 55.000 10.99 0.00 0.00 1.73
50 51 1.965930 CCCACACTTGCAGCGCTAA 60.966 57.895 10.99 0.00 0.00 3.09
51 52 2.358615 CCCACACTTGCAGCGCTA 60.359 61.111 10.99 0.00 0.00 4.26
54 55 3.367743 ATGCCCACACTTGCAGCG 61.368 61.111 0.00 0.00 41.46 5.18
55 56 2.260434 CATGCCCACACTTGCAGC 59.740 61.111 0.00 0.00 41.46 5.25
56 57 1.904865 ACCATGCCCACACTTGCAG 60.905 57.895 0.00 0.00 41.46 4.41
57 58 2.198150 ACCATGCCCACACTTGCA 59.802 55.556 0.00 0.00 42.52 4.08
58 59 2.652530 CACCATGCCCACACTTGC 59.347 61.111 0.00 0.00 0.00 4.01
59 60 2.934570 GCCACCATGCCCACACTTG 61.935 63.158 0.00 0.00 0.00 3.16
60 61 2.601367 GCCACCATGCCCACACTT 60.601 61.111 0.00 0.00 0.00 3.16
61 62 4.684134 GGCCACCATGCCCACACT 62.684 66.667 0.00 0.00 46.11 3.55
68 69 2.034687 AGTCACTGGCCACCATGC 59.965 61.111 0.00 0.00 30.82 4.06
69 70 0.037303 AAGAGTCACTGGCCACCATG 59.963 55.000 0.00 0.00 30.82 3.66
70 71 0.326264 GAAGAGTCACTGGCCACCAT 59.674 55.000 0.00 0.00 30.82 3.55
71 72 1.754745 GAAGAGTCACTGGCCACCA 59.245 57.895 0.00 0.00 0.00 4.17
72 73 1.374758 CGAAGAGTCACTGGCCACC 60.375 63.158 0.00 0.00 0.00 4.61
73 74 1.374758 CCGAAGAGTCACTGGCCAC 60.375 63.158 0.00 0.00 0.00 5.01
74 75 2.583441 CCCGAAGAGTCACTGGCCA 61.583 63.158 4.71 4.71 0.00 5.36
75 76 2.266055 CCCGAAGAGTCACTGGCC 59.734 66.667 0.00 0.00 0.00 5.36
76 77 1.827399 TTCCCCGAAGAGTCACTGGC 61.827 60.000 0.00 0.00 0.00 4.85
77 78 0.247736 CTTCCCCGAAGAGTCACTGG 59.752 60.000 0.00 0.00 41.71 4.00
78 79 0.247736 CCTTCCCCGAAGAGTCACTG 59.752 60.000 2.95 0.00 41.71 3.66
79 80 0.178929 ACCTTCCCCGAAGAGTCACT 60.179 55.000 2.95 0.00 41.71 3.41
80 81 0.246910 GACCTTCCCCGAAGAGTCAC 59.753 60.000 2.95 0.00 41.71 3.67
81 82 0.903454 GGACCTTCCCCGAAGAGTCA 60.903 60.000 17.26 0.00 41.71 3.41
82 83 0.615261 AGGACCTTCCCCGAAGAGTC 60.615 60.000 2.95 8.22 41.71 3.36
83 84 0.905337 CAGGACCTTCCCCGAAGAGT 60.905 60.000 2.95 0.03 41.71 3.24
84 85 1.617947 CCAGGACCTTCCCCGAAGAG 61.618 65.000 2.95 0.00 41.71 2.85
85 86 1.612442 CCAGGACCTTCCCCGAAGA 60.612 63.158 2.95 0.00 41.71 2.87
86 87 2.670148 CCCAGGACCTTCCCCGAAG 61.670 68.421 0.00 0.00 37.19 3.79
87 88 2.609610 CCCAGGACCTTCCCCGAA 60.610 66.667 0.00 0.00 37.19 4.30
90 91 2.548547 AAAGCCCAGGACCTTCCCC 61.549 63.158 0.00 0.00 37.19 4.81
91 92 1.304464 CAAAGCCCAGGACCTTCCC 60.304 63.158 0.00 0.00 37.19 3.97
92 93 0.696501 TACAAAGCCCAGGACCTTCC 59.303 55.000 0.00 0.00 36.58 3.46
93 94 2.579410 TTACAAAGCCCAGGACCTTC 57.421 50.000 0.00 0.00 0.00 3.46
94 95 3.230976 CTTTTACAAAGCCCAGGACCTT 58.769 45.455 0.00 0.00 0.00 3.50
95 96 2.876581 CTTTTACAAAGCCCAGGACCT 58.123 47.619 0.00 0.00 0.00 3.85
96 97 1.272490 GCTTTTACAAAGCCCAGGACC 59.728 52.381 9.66 0.00 37.30 4.46
97 98 1.068541 CGCTTTTACAAAGCCCAGGAC 60.069 52.381 14.15 0.00 40.02 3.85
98 99 1.243902 CGCTTTTACAAAGCCCAGGA 58.756 50.000 14.15 0.00 40.02 3.86
99 100 0.958822 ACGCTTTTACAAAGCCCAGG 59.041 50.000 14.15 4.47 40.02 4.45
100 101 1.335872 CCACGCTTTTACAAAGCCCAG 60.336 52.381 14.15 4.77 40.02 4.45
101 102 0.671251 CCACGCTTTTACAAAGCCCA 59.329 50.000 14.15 0.00 40.02 5.36
102 103 0.955905 TCCACGCTTTTACAAAGCCC 59.044 50.000 14.15 0.00 40.02 5.19
103 104 1.068541 CCTCCACGCTTTTACAAAGCC 60.069 52.381 14.15 0.00 40.02 4.35
104 105 1.877443 TCCTCCACGCTTTTACAAAGC 59.123 47.619 10.61 10.61 39.77 3.51
105 106 2.484264 CCTCCTCCACGCTTTTACAAAG 59.516 50.000 0.00 0.00 0.00 2.77
106 107 2.500229 CCTCCTCCACGCTTTTACAAA 58.500 47.619 0.00 0.00 0.00 2.83
107 108 1.880646 GCCTCCTCCACGCTTTTACAA 60.881 52.381 0.00 0.00 0.00 2.41
108 109 0.321298 GCCTCCTCCACGCTTTTACA 60.321 55.000 0.00 0.00 0.00 2.41
109 110 1.359459 CGCCTCCTCCACGCTTTTAC 61.359 60.000 0.00 0.00 0.00 2.01
110 111 1.079405 CGCCTCCTCCACGCTTTTA 60.079 57.895 0.00 0.00 0.00 1.52
111 112 2.358737 CGCCTCCTCCACGCTTTT 60.359 61.111 0.00 0.00 0.00 2.27
112 113 4.394712 CCGCCTCCTCCACGCTTT 62.395 66.667 0.00 0.00 0.00 3.51
116 117 3.358076 GAGTTCCGCCTCCTCCACG 62.358 68.421 0.00 0.00 0.00 4.94
117 118 2.579738 GAGTTCCGCCTCCTCCAC 59.420 66.667 0.00 0.00 0.00 4.02
118 119 2.683933 GGAGTTCCGCCTCCTCCA 60.684 66.667 6.73 0.00 46.34 3.86
128 129 1.363744 CAAGACATGCTCGGAGTTCC 58.636 55.000 6.90 0.00 0.00 3.62
189 190 9.349713 ACCACAAAAGTATAGTCAAATCTTCAA 57.650 29.630 0.00 0.00 0.00 2.69
190 191 8.918202 ACCACAAAAGTATAGTCAAATCTTCA 57.082 30.769 0.00 0.00 0.00 3.02
191 192 9.612620 CAACCACAAAAGTATAGTCAAATCTTC 57.387 33.333 0.00 0.00 0.00 2.87
192 193 8.082242 GCAACCACAAAAGTATAGTCAAATCTT 58.918 33.333 0.00 0.00 0.00 2.40
193 194 7.573096 CGCAACCACAAAAGTATAGTCAAATCT 60.573 37.037 0.00 0.00 0.00 2.40
194 195 6.523201 CGCAACCACAAAAGTATAGTCAAATC 59.477 38.462 0.00 0.00 0.00 2.17
195 196 6.016610 ACGCAACCACAAAAGTATAGTCAAAT 60.017 34.615 0.00 0.00 0.00 2.32
196 197 5.297278 ACGCAACCACAAAAGTATAGTCAAA 59.703 36.000 0.00 0.00 0.00 2.69
197 198 4.817464 ACGCAACCACAAAAGTATAGTCAA 59.183 37.500 0.00 0.00 0.00 3.18
198 199 4.382291 ACGCAACCACAAAAGTATAGTCA 58.618 39.130 0.00 0.00 0.00 3.41
199 200 4.142966 GGACGCAACCACAAAAGTATAGTC 60.143 45.833 0.00 0.00 0.00 2.59
200 201 3.749609 GGACGCAACCACAAAAGTATAGT 59.250 43.478 0.00 0.00 0.00 2.12
201 202 3.126343 GGGACGCAACCACAAAAGTATAG 59.874 47.826 0.00 0.00 0.00 1.31
202 203 3.075884 GGGACGCAACCACAAAAGTATA 58.924 45.455 0.00 0.00 0.00 1.47
203 204 1.883926 GGGACGCAACCACAAAAGTAT 59.116 47.619 0.00 0.00 0.00 2.12
204 205 1.134037 AGGGACGCAACCACAAAAGTA 60.134 47.619 0.00 0.00 0.00 2.24
205 206 0.395173 AGGGACGCAACCACAAAAGT 60.395 50.000 0.00 0.00 0.00 2.66
206 207 0.744281 AAGGGACGCAACCACAAAAG 59.256 50.000 0.00 0.00 0.00 2.27
207 208 0.457851 CAAGGGACGCAACCACAAAA 59.542 50.000 0.00 0.00 0.00 2.44
208 209 2.010582 GCAAGGGACGCAACCACAAA 62.011 55.000 0.00 0.00 0.00 2.83
209 210 2.485795 GCAAGGGACGCAACCACAA 61.486 57.895 0.00 0.00 0.00 3.33
210 211 2.904866 GCAAGGGACGCAACCACA 60.905 61.111 0.00 0.00 0.00 4.17
211 212 2.485795 TTGCAAGGGACGCAACCAC 61.486 57.895 0.00 0.00 44.13 4.16
212 213 2.124109 TTGCAAGGGACGCAACCA 60.124 55.556 0.00 0.00 44.13 3.67
216 217 1.035923 TTTCATTTGCAAGGGACGCA 58.964 45.000 0.00 0.00 37.68 5.24
217 218 2.368655 ATTTCATTTGCAAGGGACGC 57.631 45.000 0.00 0.00 0.00 5.19
218 219 3.129287 AGCTATTTCATTTGCAAGGGACG 59.871 43.478 0.00 0.00 0.00 4.79
219 220 4.158394 TCAGCTATTTCATTTGCAAGGGAC 59.842 41.667 0.00 0.00 0.00 4.46
220 221 4.158394 GTCAGCTATTTCATTTGCAAGGGA 59.842 41.667 0.00 0.00 0.00 4.20
221 222 4.082081 TGTCAGCTATTTCATTTGCAAGGG 60.082 41.667 0.00 0.00 0.00 3.95
222 223 5.063180 TGTCAGCTATTTCATTTGCAAGG 57.937 39.130 0.00 0.00 0.00 3.61
223 224 5.100259 CCTGTCAGCTATTTCATTTGCAAG 58.900 41.667 0.00 0.00 0.00 4.01
224 225 4.523943 ACCTGTCAGCTATTTCATTTGCAA 59.476 37.500 0.00 0.00 0.00 4.08
225 226 4.081406 ACCTGTCAGCTATTTCATTTGCA 58.919 39.130 0.00 0.00 0.00 4.08
226 227 4.439289 GGACCTGTCAGCTATTTCATTTGC 60.439 45.833 0.00 0.00 0.00 3.68
227 228 4.946157 AGGACCTGTCAGCTATTTCATTTG 59.054 41.667 0.00 0.00 0.00 2.32
228 229 5.184892 AGGACCTGTCAGCTATTTCATTT 57.815 39.130 0.00 0.00 0.00 2.32
229 230 4.225942 TGAGGACCTGTCAGCTATTTCATT 59.774 41.667 0.00 0.00 0.00 2.57
230 231 3.776969 TGAGGACCTGTCAGCTATTTCAT 59.223 43.478 0.00 0.00 0.00 2.57
231 232 3.055819 GTGAGGACCTGTCAGCTATTTCA 60.056 47.826 0.00 0.00 0.00 2.69
232 233 3.196685 AGTGAGGACCTGTCAGCTATTTC 59.803 47.826 0.00 0.00 0.00 2.17
233 234 3.055530 CAGTGAGGACCTGTCAGCTATTT 60.056 47.826 0.00 0.00 0.00 1.40
234 235 2.499289 CAGTGAGGACCTGTCAGCTATT 59.501 50.000 0.00 0.00 0.00 1.73
235 236 2.106566 CAGTGAGGACCTGTCAGCTAT 58.893 52.381 0.00 0.00 0.00 2.97
236 237 1.550327 CAGTGAGGACCTGTCAGCTA 58.450 55.000 0.00 0.00 0.00 3.32
237 238 1.190833 CCAGTGAGGACCTGTCAGCT 61.191 60.000 0.00 0.00 41.22 4.24
238 239 1.294780 CCAGTGAGGACCTGTCAGC 59.705 63.158 0.00 0.00 41.22 4.26
239 240 1.294780 GCCAGTGAGGACCTGTCAG 59.705 63.158 0.00 0.00 41.22 3.51
240 241 2.217038 GGCCAGTGAGGACCTGTCA 61.217 63.158 0.00 0.00 40.85 3.58
241 242 2.665603 GGCCAGTGAGGACCTGTC 59.334 66.667 0.00 0.00 40.85 3.51
242 243 3.314331 CGGCCAGTGAGGACCTGT 61.314 66.667 2.24 0.00 45.73 4.00
243 244 1.903877 AATCGGCCAGTGAGGACCTG 61.904 60.000 2.24 0.00 45.73 4.00
244 245 1.201429 AAATCGGCCAGTGAGGACCT 61.201 55.000 2.24 0.00 45.73 3.85
245 246 1.026718 CAAATCGGCCAGTGAGGACC 61.027 60.000 2.24 0.00 45.73 4.46
246 247 0.036388 TCAAATCGGCCAGTGAGGAC 60.036 55.000 2.24 0.00 44.64 3.85
247 248 0.690192 TTCAAATCGGCCAGTGAGGA 59.310 50.000 2.24 0.00 41.22 3.71
248 249 1.533625 TTTCAAATCGGCCAGTGAGG 58.466 50.000 2.24 0.00 41.84 3.86
249 250 3.568538 CTTTTTCAAATCGGCCAGTGAG 58.431 45.455 2.24 0.00 0.00 3.51
250 251 2.295909 CCTTTTTCAAATCGGCCAGTGA 59.704 45.455 2.24 0.00 0.00 3.41
251 252 2.295909 TCCTTTTTCAAATCGGCCAGTG 59.704 45.455 2.24 0.00 0.00 3.66
252 253 2.593026 TCCTTTTTCAAATCGGCCAGT 58.407 42.857 2.24 0.00 0.00 4.00
253 254 3.658757 TTCCTTTTTCAAATCGGCCAG 57.341 42.857 2.24 0.00 0.00 4.85
254 255 3.366883 CGATTCCTTTTTCAAATCGGCCA 60.367 43.478 2.24 0.00 44.84 5.36
255 256 3.179048 CGATTCCTTTTTCAAATCGGCC 58.821 45.455 8.43 0.00 44.84 6.13
259 260 6.502136 ACTCCTCGATTCCTTTTTCAAATC 57.498 37.500 0.00 0.00 0.00 2.17
260 261 6.901081 AACTCCTCGATTCCTTTTTCAAAT 57.099 33.333 0.00 0.00 0.00 2.32
261 262 6.709018 AAACTCCTCGATTCCTTTTTCAAA 57.291 33.333 0.00 0.00 0.00 2.69
262 263 7.663905 TGATAAACTCCTCGATTCCTTTTTCAA 59.336 33.333 0.00 0.00 0.00 2.69
263 264 7.165485 TGATAAACTCCTCGATTCCTTTTTCA 58.835 34.615 0.00 0.00 0.00 2.69
264 265 7.611213 TGATAAACTCCTCGATTCCTTTTTC 57.389 36.000 0.00 0.00 0.00 2.29
265 266 7.996098 TTGATAAACTCCTCGATTCCTTTTT 57.004 32.000 0.00 0.00 0.00 1.94
266 267 7.362142 GCTTTGATAAACTCCTCGATTCCTTTT 60.362 37.037 0.00 0.00 0.00 2.27
267 268 6.094186 GCTTTGATAAACTCCTCGATTCCTTT 59.906 38.462 0.00 0.00 0.00 3.11
268 269 5.586643 GCTTTGATAAACTCCTCGATTCCTT 59.413 40.000 0.00 0.00 0.00 3.36
269 270 5.104735 AGCTTTGATAAACTCCTCGATTCCT 60.105 40.000 0.00 0.00 0.00 3.36
270 271 5.119694 AGCTTTGATAAACTCCTCGATTCC 58.880 41.667 0.00 0.00 0.00 3.01
271 272 6.670077 AAGCTTTGATAAACTCCTCGATTC 57.330 37.500 0.00 0.00 0.00 2.52
272 273 9.832445 TTATAAGCTTTGATAAACTCCTCGATT 57.168 29.630 3.20 0.00 0.00 3.34
273 274 9.832445 TTTATAAGCTTTGATAAACTCCTCGAT 57.168 29.630 3.20 0.00 0.00 3.59
274 275 9.832445 ATTTATAAGCTTTGATAAACTCCTCGA 57.168 29.630 13.95 0.00 31.97 4.04
300 301 9.796120 GCCACAACATTAGCATATTTAAACTTA 57.204 29.630 0.00 0.00 0.00 2.24
301 302 7.763985 GGCCACAACATTAGCATATTTAAACTT 59.236 33.333 0.00 0.00 0.00 2.66
302 303 7.264947 GGCCACAACATTAGCATATTTAAACT 58.735 34.615 0.00 0.00 0.00 2.66
303 304 6.478673 GGGCCACAACATTAGCATATTTAAAC 59.521 38.462 4.39 0.00 0.00 2.01
304 305 6.155221 TGGGCCACAACATTAGCATATTTAAA 59.845 34.615 0.00 0.00 0.00 1.52
305 306 5.658634 TGGGCCACAACATTAGCATATTTAA 59.341 36.000 0.00 0.00 0.00 1.52
306 307 5.204292 TGGGCCACAACATTAGCATATTTA 58.796 37.500 0.00 0.00 0.00 1.40
307 308 4.029520 TGGGCCACAACATTAGCATATTT 58.970 39.130 0.00 0.00 0.00 1.40
308 309 3.641046 TGGGCCACAACATTAGCATATT 58.359 40.909 0.00 0.00 0.00 1.28
309 310 3.311167 TGGGCCACAACATTAGCATAT 57.689 42.857 0.00 0.00 0.00 1.78
310 311 2.816777 TGGGCCACAACATTAGCATA 57.183 45.000 0.00 0.00 0.00 3.14
311 312 2.163810 ATGGGCCACAACATTAGCAT 57.836 45.000 9.28 0.00 0.00 3.79
312 313 2.816777 TATGGGCCACAACATTAGCA 57.183 45.000 9.28 0.00 0.00 3.49
313 314 3.221771 TCATATGGGCCACAACATTAGC 58.778 45.455 9.28 0.00 0.00 3.09
314 315 5.775686 CAATCATATGGGCCACAACATTAG 58.224 41.667 9.28 0.00 0.00 1.73
315 316 4.039004 GCAATCATATGGGCCACAACATTA 59.961 41.667 9.28 0.00 0.00 1.90
316 317 3.181463 GCAATCATATGGGCCACAACATT 60.181 43.478 9.28 2.23 0.00 2.71
317 318 2.366266 GCAATCATATGGGCCACAACAT 59.634 45.455 9.28 0.42 0.00 2.71
318 319 1.755959 GCAATCATATGGGCCACAACA 59.244 47.619 9.28 0.00 0.00 3.33
319 320 1.269206 CGCAATCATATGGGCCACAAC 60.269 52.381 9.28 0.00 0.00 3.32
320 321 1.031235 CGCAATCATATGGGCCACAA 58.969 50.000 9.28 0.00 0.00 3.33
321 322 0.182299 TCGCAATCATATGGGCCACA 59.818 50.000 9.28 0.00 33.61 4.17
322 323 1.267806 CTTCGCAATCATATGGGCCAC 59.732 52.381 9.28 0.00 33.61 5.01
323 324 1.133823 ACTTCGCAATCATATGGGCCA 60.134 47.619 9.61 9.61 33.61 5.36
324 325 1.609208 ACTTCGCAATCATATGGGCC 58.391 50.000 2.13 0.00 33.61 5.80
325 326 3.715628 AAACTTCGCAATCATATGGGC 57.284 42.857 2.13 4.04 33.61 5.36
326 327 4.516698 AGCTAAACTTCGCAATCATATGGG 59.483 41.667 2.13 0.00 34.79 4.00
327 328 5.679734 AGCTAAACTTCGCAATCATATGG 57.320 39.130 2.13 0.00 0.00 2.74
341 342 9.099454 CGGAGAAAGTATTATTGAAGCTAAACT 57.901 33.333 0.00 0.00 0.00 2.66
342 343 8.336080 CCGGAGAAAGTATTATTGAAGCTAAAC 58.664 37.037 0.00 0.00 0.00 2.01
343 344 8.044908 ACCGGAGAAAGTATTATTGAAGCTAAA 58.955 33.333 9.46 0.00 0.00 1.85
344 345 7.562135 ACCGGAGAAAGTATTATTGAAGCTAA 58.438 34.615 9.46 0.00 0.00 3.09
345 346 7.120923 ACCGGAGAAAGTATTATTGAAGCTA 57.879 36.000 9.46 0.00 0.00 3.32
346 347 5.990668 ACCGGAGAAAGTATTATTGAAGCT 58.009 37.500 9.46 0.00 0.00 3.74
347 348 5.236695 GGACCGGAGAAAGTATTATTGAAGC 59.763 44.000 9.46 0.00 0.00 3.86
348 349 6.583562 AGGACCGGAGAAAGTATTATTGAAG 58.416 40.000 9.46 0.00 0.00 3.02
349 350 6.555463 AGGACCGGAGAAAGTATTATTGAA 57.445 37.500 9.46 0.00 0.00 2.69
350 351 6.555463 AAGGACCGGAGAAAGTATTATTGA 57.445 37.500 9.46 0.00 0.00 2.57
351 352 7.625828 AAAAGGACCGGAGAAAGTATTATTG 57.374 36.000 9.46 0.00 0.00 1.90
352 353 9.170734 GTAAAAAGGACCGGAGAAAGTATTATT 57.829 33.333 9.46 0.00 0.00 1.40
353 354 8.546322 AGTAAAAAGGACCGGAGAAAGTATTAT 58.454 33.333 9.46 0.00 0.00 1.28
354 355 7.910584 AGTAAAAAGGACCGGAGAAAGTATTA 58.089 34.615 9.46 0.00 0.00 0.98
355 356 6.776744 AGTAAAAAGGACCGGAGAAAGTATT 58.223 36.000 9.46 0.00 0.00 1.89
356 357 6.212993 AGAGTAAAAAGGACCGGAGAAAGTAT 59.787 38.462 9.46 0.00 0.00 2.12
357 358 5.541484 AGAGTAAAAAGGACCGGAGAAAGTA 59.459 40.000 9.46 0.00 0.00 2.24
358 359 4.347292 AGAGTAAAAAGGACCGGAGAAAGT 59.653 41.667 9.46 0.00 0.00 2.66
359 360 4.691216 CAGAGTAAAAAGGACCGGAGAAAG 59.309 45.833 9.46 0.00 0.00 2.62
360 361 4.638304 CAGAGTAAAAAGGACCGGAGAAA 58.362 43.478 9.46 0.00 0.00 2.52
361 362 3.556423 GCAGAGTAAAAAGGACCGGAGAA 60.556 47.826 9.46 0.00 0.00 2.87
362 363 2.028385 GCAGAGTAAAAAGGACCGGAGA 60.028 50.000 9.46 0.00 0.00 3.71
363 364 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
364 365 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
365 366 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
366 367 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
367 368 8.732746 TTCTAATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
377 378 8.703743 ACTTCAGAGAATTCTAATATGCAGAGT 58.296 33.333 8.25 7.29 30.73 3.24
378 379 9.195411 GACTTCAGAGAATTCTAATATGCAGAG 57.805 37.037 8.25 6.79 30.73 3.35
379 380 8.699130 TGACTTCAGAGAATTCTAATATGCAGA 58.301 33.333 8.25 0.00 30.73 4.26
380 381 8.883954 TGACTTCAGAGAATTCTAATATGCAG 57.116 34.615 8.25 7.58 30.73 4.41
381 382 9.671279 TTTGACTTCAGAGAATTCTAATATGCA 57.329 29.630 8.25 0.00 30.73 3.96
382 383 9.928236 GTTTGACTTCAGAGAATTCTAATATGC 57.072 33.333 8.25 0.00 30.73 3.14
473 474 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
474 475 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
475 476 9.725019 ATAGATGTGTCATGACTTAAAGTTTCA 57.275 29.630 25.55 11.05 0.00 2.69
478 479 9.725019 TCAATAGATGTGTCATGACTTAAAGTT 57.275 29.630 25.55 10.34 0.00 2.66
479 480 9.896645 ATCAATAGATGTGTCATGACTTAAAGT 57.103 29.630 25.55 9.39 31.91 2.66
504 505 9.811995 CCAACATTCACAATCTGAAATCAATAT 57.188 29.630 0.00 0.00 42.37 1.28
505 506 8.805175 ACCAACATTCACAATCTGAAATCAATA 58.195 29.630 0.00 0.00 42.37 1.90
506 507 7.673180 ACCAACATTCACAATCTGAAATCAAT 58.327 30.769 0.00 0.00 42.37 2.57
507 508 7.053316 ACCAACATTCACAATCTGAAATCAA 57.947 32.000 0.00 0.00 42.37 2.57
508 509 6.653526 ACCAACATTCACAATCTGAAATCA 57.346 33.333 0.00 0.00 42.37 2.57
509 510 9.643693 AAATACCAACATTCACAATCTGAAATC 57.356 29.630 0.00 0.00 42.37 2.17
511 512 9.829507 AAAAATACCAACATTCACAATCTGAAA 57.170 25.926 0.00 0.00 42.37 2.69
546 547 2.876550 AGCCTCGTAAAGTTTGACCAAC 59.123 45.455 0.00 0.00 35.32 3.77
547 548 3.202829 AGCCTCGTAAAGTTTGACCAA 57.797 42.857 0.00 0.00 0.00 3.67
548 549 2.875933 CAAGCCTCGTAAAGTTTGACCA 59.124 45.455 0.00 0.00 0.00 4.02
549 550 3.059120 GTCAAGCCTCGTAAAGTTTGACC 60.059 47.826 8.09 0.00 39.44 4.02
550 551 3.808174 AGTCAAGCCTCGTAAAGTTTGAC 59.192 43.478 10.54 10.54 42.37 3.18
551 552 4.067972 AGTCAAGCCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
552 553 4.272504 TGAAGTCAAGCCTCGTAAAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
553 554 4.448210 TGAAGTCAAGCCTCGTAAAGTTT 58.552 39.130 0.00 0.00 0.00 2.66
554 555 4.058817 CTGAAGTCAAGCCTCGTAAAGTT 58.941 43.478 0.00 0.00 0.00 2.66
555 556 3.069729 ACTGAAGTCAAGCCTCGTAAAGT 59.930 43.478 0.00 0.00 0.00 2.66
556 557 3.654414 ACTGAAGTCAAGCCTCGTAAAG 58.346 45.455 0.00 0.00 0.00 1.85
557 558 3.746045 ACTGAAGTCAAGCCTCGTAAA 57.254 42.857 0.00 0.00 0.00 2.01
558 559 3.746045 AACTGAAGTCAAGCCTCGTAA 57.254 42.857 0.00 0.00 0.00 3.18
559 560 4.859304 TTAACTGAAGTCAAGCCTCGTA 57.141 40.909 0.00 0.00 0.00 3.43
560 561 3.746045 TTAACTGAAGTCAAGCCTCGT 57.254 42.857 0.00 0.00 0.00 4.18
561 562 4.932200 AGATTTAACTGAAGTCAAGCCTCG 59.068 41.667 0.00 0.00 0.00 4.63
562 563 6.809630 AAGATTTAACTGAAGTCAAGCCTC 57.190 37.500 0.00 0.00 0.00 4.70
565 566 9.657121 GCATATAAGATTTAACTGAAGTCAAGC 57.343 33.333 0.00 0.00 0.00 4.01
566 567 9.855361 CGCATATAAGATTTAACTGAAGTCAAG 57.145 33.333 0.00 0.00 0.00 3.02
567 568 9.594478 TCGCATATAAGATTTAACTGAAGTCAA 57.406 29.630 0.00 0.00 0.00 3.18
568 569 9.594478 TTCGCATATAAGATTTAACTGAAGTCA 57.406 29.630 0.00 0.00 0.00 3.41
569 570 9.851043 GTTCGCATATAAGATTTAACTGAAGTC 57.149 33.333 0.00 0.00 0.00 3.01
570 571 9.601217 AGTTCGCATATAAGATTTAACTGAAGT 57.399 29.630 0.00 0.00 0.00 3.01
580 581 8.837389 GGTCCTTTTTAGTTCGCATATAAGATT 58.163 33.333 0.00 0.00 0.00 2.40
581 582 7.170998 CGGTCCTTTTTAGTTCGCATATAAGAT 59.829 37.037 0.00 0.00 0.00 2.40
582 583 6.477688 CGGTCCTTTTTAGTTCGCATATAAGA 59.522 38.462 0.00 0.00 0.00 2.10
583 584 6.292703 CCGGTCCTTTTTAGTTCGCATATAAG 60.293 42.308 0.00 0.00 0.00 1.73
584 585 5.524646 CCGGTCCTTTTTAGTTCGCATATAA 59.475 40.000 0.00 0.00 0.00 0.98
585 586 5.051816 CCGGTCCTTTTTAGTTCGCATATA 58.948 41.667 0.00 0.00 0.00 0.86
586 587 3.875134 CCGGTCCTTTTTAGTTCGCATAT 59.125 43.478 0.00 0.00 0.00 1.78
587 588 3.055963 TCCGGTCCTTTTTAGTTCGCATA 60.056 43.478 0.00 0.00 0.00 3.14
588 589 2.081462 CCGGTCCTTTTTAGTTCGCAT 58.919 47.619 0.00 0.00 0.00 4.73
589 590 1.070445 TCCGGTCCTTTTTAGTTCGCA 59.930 47.619 0.00 0.00 0.00 5.10
590 591 1.730612 CTCCGGTCCTTTTTAGTTCGC 59.269 52.381 0.00 0.00 0.00 4.70
591 592 2.344025 CCTCCGGTCCTTTTTAGTTCG 58.656 52.381 0.00 0.00 0.00 3.95
592 593 2.303890 TCCCTCCGGTCCTTTTTAGTTC 59.696 50.000 0.00 0.00 0.00 3.01
593 594 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
594 595 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
595 596 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
596 597 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
597 598 1.907255 CTACTCCCTCCGGTCCTTTTT 59.093 52.381 0.00 0.00 0.00 1.94
598 599 1.078324 TCTACTCCCTCCGGTCCTTTT 59.922 52.381 0.00 0.00 0.00 2.27
599 600 0.708802 TCTACTCCCTCCGGTCCTTT 59.291 55.000 0.00 0.00 0.00 3.11
600 601 0.935194 ATCTACTCCCTCCGGTCCTT 59.065 55.000 0.00 0.00 0.00 3.36
601 602 0.186386 CATCTACTCCCTCCGGTCCT 59.814 60.000 0.00 0.00 0.00 3.85
602 603 0.828343 CCATCTACTCCCTCCGGTCC 60.828 65.000 0.00 0.00 0.00 4.46
603 604 0.828343 CCCATCTACTCCCTCCGGTC 60.828 65.000 0.00 0.00 0.00 4.79
604 605 1.233369 CCCATCTACTCCCTCCGGT 59.767 63.158 0.00 0.00 0.00 5.28
605 606 0.115349 ATCCCATCTACTCCCTCCGG 59.885 60.000 0.00 0.00 0.00 5.14
606 607 1.261480 CATCCCATCTACTCCCTCCG 58.739 60.000 0.00 0.00 0.00 4.63
607 608 1.132689 ACCATCCCATCTACTCCCTCC 60.133 57.143 0.00 0.00 0.00 4.30
608 609 2.407340 ACCATCCCATCTACTCCCTC 57.593 55.000 0.00 0.00 0.00 4.30
609 610 4.110426 AGAATACCATCCCATCTACTCCCT 59.890 45.833 0.00 0.00 0.00 4.20
610 611 4.430441 AGAATACCATCCCATCTACTCCC 58.570 47.826 0.00 0.00 0.00 4.30
611 612 5.308237 ACAAGAATACCATCCCATCTACTCC 59.692 44.000 0.00 0.00 0.00 3.85
612 613 6.426646 ACAAGAATACCATCCCATCTACTC 57.573 41.667 0.00 0.00 0.00 2.59
613 614 6.831664 AACAAGAATACCATCCCATCTACT 57.168 37.500 0.00 0.00 0.00 2.57
614 615 9.003658 CATTAACAAGAATACCATCCCATCTAC 57.996 37.037 0.00 0.00 0.00 2.59
615 616 8.944138 TCATTAACAAGAATACCATCCCATCTA 58.056 33.333 0.00 0.00 0.00 1.98
616 617 7.815383 TCATTAACAAGAATACCATCCCATCT 58.185 34.615 0.00 0.00 0.00 2.90
617 618 8.517878 CATCATTAACAAGAATACCATCCCATC 58.482 37.037 0.00 0.00 0.00 3.51
618 619 7.039504 GCATCATTAACAAGAATACCATCCCAT 60.040 37.037 0.00 0.00 0.00 4.00
619 620 6.265196 GCATCATTAACAAGAATACCATCCCA 59.735 38.462 0.00 0.00 0.00 4.37
620 621 6.491403 AGCATCATTAACAAGAATACCATCCC 59.509 38.462 0.00 0.00 0.00 3.85
621 622 7.308830 GGAGCATCATTAACAAGAATACCATCC 60.309 40.741 0.00 0.00 36.25 3.51
622 623 7.571983 CGGAGCATCATTAACAAGAATACCATC 60.572 40.741 0.00 0.00 36.25 3.51
623 624 6.205464 CGGAGCATCATTAACAAGAATACCAT 59.795 38.462 0.00 0.00 36.25 3.55
624 625 5.527214 CGGAGCATCATTAACAAGAATACCA 59.473 40.000 0.00 0.00 36.25 3.25
625 626 5.990408 CGGAGCATCATTAACAAGAATACC 58.010 41.667 0.00 0.00 36.25 2.73
654 655 9.949174 CGATCATTCATTATAAAATTGACCACA 57.051 29.630 0.00 0.00 0.00 4.17
655 656 9.950680 ACGATCATTCATTATAAAATTGACCAC 57.049 29.630 0.00 0.00 0.00 4.16
743 744 5.508124 TGTTTTTCTTTTGCGACAAAGTG 57.492 34.783 6.64 4.70 0.00 3.16
745 746 7.214263 GTCATTTGTTTTTCTTTTGCGACAAAG 59.786 33.333 0.00 3.44 39.45 2.77
746 747 7.012358 GTCATTTGTTTTTCTTTTGCGACAAA 58.988 30.769 0.00 0.00 40.10 2.83
747 748 6.146184 TGTCATTTGTTTTTCTTTTGCGACAA 59.854 30.769 0.00 0.00 0.00 3.18
780 782 1.135972 CACCAAAGCTGATGTGTACGC 60.136 52.381 0.00 0.00 0.00 4.42
803 805 2.432628 GTGGGGTCTCGAACTGCG 60.433 66.667 0.00 0.00 42.69 5.18
963 965 3.190118 GGACAAGTGCTTGGAATTGAGAG 59.810 47.826 15.31 0.00 44.45 3.20
982 984 2.019984 CATCTTGGCTTAAGGCTGGAC 58.980 52.381 27.19 0.00 41.69 4.02
983 985 1.915489 TCATCTTGGCTTAAGGCTGGA 59.085 47.619 27.19 23.09 41.69 3.86
985 987 3.084039 TGTTCATCTTGGCTTAAGGCTG 58.916 45.455 27.19 19.72 41.69 4.85
1011 1013 3.753434 CCGGCGTCTGTCTCTGCT 61.753 66.667 6.01 0.00 0.00 4.24
1095 1097 2.887568 CGCGACATGGACTGCTCC 60.888 66.667 0.00 0.00 37.04 4.70
1473 1478 0.251033 AAACCTCGTAACCCAAGGCC 60.251 55.000 0.00 0.00 33.21 5.19
1508 1515 1.229529 TCCTCCACCCCTCCTGAAC 60.230 63.158 0.00 0.00 0.00 3.18
1606 1613 2.105006 TCAGACTTCAGAGCATTGGC 57.895 50.000 0.00 0.00 41.61 4.52
1673 1685 5.563842 GCTCGAACTCACCAATAATCAAAG 58.436 41.667 0.00 0.00 0.00 2.77
1685 1697 1.450905 GTACAACACGCTCGAACTCAC 59.549 52.381 0.00 0.00 0.00 3.51
1699 1715 7.097192 TCTGACCATCTAATCTGTTGTACAAC 58.903 38.462 28.13 28.13 41.50 3.32
1718 1734 4.504858 ACTTACAAACCATCGATCTGACC 58.495 43.478 0.00 0.00 0.00 4.02
1751 1767 9.702494 AAACTTAACTGGTGATAGTTACAGTAC 57.298 33.333 0.00 0.00 42.85 2.73
1752 1768 9.918630 GAAACTTAACTGGTGATAGTTACAGTA 57.081 33.333 0.00 0.00 42.85 2.74
1753 1769 8.648693 AGAAACTTAACTGGTGATAGTTACAGT 58.351 33.333 0.00 0.00 45.34 3.55
1754 1770 9.141400 GAGAAACTTAACTGGTGATAGTTACAG 57.859 37.037 0.00 0.00 41.46 2.74
1755 1771 8.092687 GGAGAAACTTAACTGGTGATAGTTACA 58.907 37.037 0.00 0.00 41.46 2.41
1791 1807 1.959282 ACTGACGGAAAAGTAGGACGT 59.041 47.619 0.00 0.00 40.85 4.34
1844 1860 2.864343 GGTTCGTTACGATTCCATCAGG 59.136 50.000 8.67 0.00 35.23 3.86
1870 1886 1.276421 AGGGTGGATTTCGTGTCAGAG 59.724 52.381 0.00 0.00 0.00 3.35
1873 1889 0.605319 GCAGGGTGGATTTCGTGTCA 60.605 55.000 0.00 0.00 0.00 3.58
1877 1893 1.818674 GAATTGCAGGGTGGATTTCGT 59.181 47.619 0.00 0.00 0.00 3.85
1912 1928 2.166459 TGTTTTTGTTGCGATTCCCACA 59.834 40.909 0.00 0.00 0.00 4.17
1927 1943 0.662077 GATCCGGCGCGTTTGTTTTT 60.662 50.000 8.43 0.00 0.00 1.94
1961 1977 2.225727 GGCCGAACTTGAAAGTCGATTT 59.774 45.455 13.15 0.00 38.57 2.17
1963 1979 1.439679 GGCCGAACTTGAAAGTCGAT 58.560 50.000 13.15 0.00 38.57 3.59
1983 2000 2.227089 CTCCGGGACTCTTGGGTTCG 62.227 65.000 0.00 0.00 0.00 3.95
1988 2005 1.684049 AGAGCTCCGGGACTCTTGG 60.684 63.158 18.20 0.00 40.35 3.61
1990 2007 0.251832 TTCAGAGCTCCGGGACTCTT 60.252 55.000 20.52 7.36 41.31 2.85
2291 2312 3.196207 ATCTTGGCACACCTGCGGT 62.196 57.895 0.00 0.00 45.31 5.68
2335 2356 4.899502 TCAGGAGGTTTGATCAGTTCTTC 58.100 43.478 0.00 0.00 0.00 2.87
2426 2451 1.808411 TCTAGCGCTTCAAACAAGGG 58.192 50.000 18.68 0.00 0.00 3.95
2428 2453 5.554636 CAACTATCTAGCGCTTCAAACAAG 58.445 41.667 18.68 4.68 0.00 3.16
2431 2456 3.370978 TGCAACTATCTAGCGCTTCAAAC 59.629 43.478 18.68 0.00 0.00 2.93
2452 2477 4.125703 CCCTAAGATTGCAGCTCTAGTTG 58.874 47.826 1.70 0.00 0.00 3.16
2459 2484 0.471617 ATCGCCCTAAGATTGCAGCT 59.528 50.000 0.00 0.00 0.00 4.24
2460 2485 2.169832 TATCGCCCTAAGATTGCAGC 57.830 50.000 0.00 0.00 0.00 5.25
2510 2535 9.120538 GCATTAGTTTATCCCATTGTCTCTAAA 57.879 33.333 0.00 0.00 0.00 1.85
2511 2536 7.441157 CGCATTAGTTTATCCCATTGTCTCTAA 59.559 37.037 0.00 0.00 0.00 2.10
2512 2537 6.929049 CGCATTAGTTTATCCCATTGTCTCTA 59.071 38.462 0.00 0.00 0.00 2.43
2513 2538 5.760253 CGCATTAGTTTATCCCATTGTCTCT 59.240 40.000 0.00 0.00 0.00 3.10
2514 2539 5.049405 CCGCATTAGTTTATCCCATTGTCTC 60.049 44.000 0.00 0.00 0.00 3.36
2515 2540 4.821805 CCGCATTAGTTTATCCCATTGTCT 59.178 41.667 0.00 0.00 0.00 3.41
2516 2541 4.819630 TCCGCATTAGTTTATCCCATTGTC 59.180 41.667 0.00 0.00 0.00 3.18
2517 2542 4.787551 TCCGCATTAGTTTATCCCATTGT 58.212 39.130 0.00 0.00 0.00 2.71
2518 2543 5.063204 TCTCCGCATTAGTTTATCCCATTG 58.937 41.667 0.00 0.00 0.00 2.82
2519 2544 5.304686 TCTCCGCATTAGTTTATCCCATT 57.695 39.130 0.00 0.00 0.00 3.16
2520 2545 4.974645 TCTCCGCATTAGTTTATCCCAT 57.025 40.909 0.00 0.00 0.00 4.00
2521 2546 4.974645 ATCTCCGCATTAGTTTATCCCA 57.025 40.909 0.00 0.00 0.00 4.37
2522 2547 5.638234 GTGTATCTCCGCATTAGTTTATCCC 59.362 44.000 0.00 0.00 0.00 3.85
2523 2548 6.220930 TGTGTATCTCCGCATTAGTTTATCC 58.779 40.000 0.00 0.00 0.00 2.59
2524 2549 7.709269 TTGTGTATCTCCGCATTAGTTTATC 57.291 36.000 0.00 0.00 0.00 1.75
2525 2550 8.500753 TTTTGTGTATCTCCGCATTAGTTTAT 57.499 30.769 0.00 0.00 0.00 1.40
2526 2551 7.908827 TTTTGTGTATCTCCGCATTAGTTTA 57.091 32.000 0.00 0.00 0.00 2.01
2527 2552 6.811253 TTTTGTGTATCTCCGCATTAGTTT 57.189 33.333 0.00 0.00 0.00 2.66
2528 2553 6.811253 TTTTTGTGTATCTCCGCATTAGTT 57.189 33.333 0.00 0.00 0.00 2.24
2550 2575 9.971922 CTGTTCAGGTTCTTTTTATGAGAATTT 57.028 29.630 0.00 0.00 35.74 1.82
2551 2576 8.084684 GCTGTTCAGGTTCTTTTTATGAGAATT 58.915 33.333 1.97 0.00 35.74 2.17
2552 2577 7.231317 TGCTGTTCAGGTTCTTTTTATGAGAAT 59.769 33.333 1.97 0.00 35.74 2.40
2553 2578 6.545666 TGCTGTTCAGGTTCTTTTTATGAGAA 59.454 34.615 1.97 0.00 0.00 2.87
2554 2579 6.061441 TGCTGTTCAGGTTCTTTTTATGAGA 58.939 36.000 1.97 0.00 0.00 3.27
2555 2580 6.317789 TGCTGTTCAGGTTCTTTTTATGAG 57.682 37.500 1.97 0.00 0.00 2.90
2556 2581 6.317789 CTGCTGTTCAGGTTCTTTTTATGA 57.682 37.500 1.97 0.00 39.15 2.15
2569 2594 2.486472 AGAACCATCCTGCTGTTCAG 57.514 50.000 0.00 0.00 40.58 3.02
2570 2595 2.957402 AAGAACCATCCTGCTGTTCA 57.043 45.000 0.00 0.00 40.58 3.18
2571 2596 3.823304 AGAAAAGAACCATCCTGCTGTTC 59.177 43.478 0.00 0.00 38.88 3.18
2572 2597 3.837355 AGAAAAGAACCATCCTGCTGTT 58.163 40.909 0.00 0.00 0.00 3.16
2573 2598 3.515602 AGAAAAGAACCATCCTGCTGT 57.484 42.857 0.00 0.00 0.00 4.40
2574 2599 4.553323 CAAAGAAAAGAACCATCCTGCTG 58.447 43.478 0.00 0.00 0.00 4.41
2575 2600 3.006217 GCAAAGAAAAGAACCATCCTGCT 59.994 43.478 0.00 0.00 0.00 4.24
2576 2601 3.243839 TGCAAAGAAAAGAACCATCCTGC 60.244 43.478 0.00 0.00 0.00 4.85
2577 2602 4.553323 CTGCAAAGAAAAGAACCATCCTG 58.447 43.478 0.00 0.00 0.00 3.86
2578 2603 3.006217 GCTGCAAAGAAAAGAACCATCCT 59.994 43.478 0.00 0.00 0.00 3.24
2579 2604 3.006217 AGCTGCAAAGAAAAGAACCATCC 59.994 43.478 1.02 0.00 0.00 3.51
2580 2605 4.248691 AGCTGCAAAGAAAAGAACCATC 57.751 40.909 1.02 0.00 0.00 3.51
2581 2606 5.068987 TGTTAGCTGCAAAGAAAAGAACCAT 59.931 36.000 1.02 0.00 0.00 3.55
2582 2607 4.400884 TGTTAGCTGCAAAGAAAAGAACCA 59.599 37.500 1.02 0.00 0.00 3.67
2583 2608 4.932146 TGTTAGCTGCAAAGAAAAGAACC 58.068 39.130 1.02 0.00 0.00 3.62
2584 2609 5.456822 CACTGTTAGCTGCAAAGAAAAGAAC 59.543 40.000 1.02 0.00 0.00 3.01
2585 2610 5.450412 CCACTGTTAGCTGCAAAGAAAAGAA 60.450 40.000 1.02 0.00 0.00 2.52
2586 2611 4.036734 CCACTGTTAGCTGCAAAGAAAAGA 59.963 41.667 1.02 0.00 0.00 2.52
2587 2612 4.202050 ACCACTGTTAGCTGCAAAGAAAAG 60.202 41.667 1.02 0.00 0.00 2.27
2588 2613 3.699038 ACCACTGTTAGCTGCAAAGAAAA 59.301 39.130 1.02 0.00 0.00 2.29
2589 2614 3.066621 CACCACTGTTAGCTGCAAAGAAA 59.933 43.478 1.02 0.00 0.00 2.52
2590 2615 2.618241 CACCACTGTTAGCTGCAAAGAA 59.382 45.455 1.02 0.00 0.00 2.52
2591 2616 2.158827 TCACCACTGTTAGCTGCAAAGA 60.159 45.455 1.02 0.00 0.00 2.52
2592 2617 2.221169 TCACCACTGTTAGCTGCAAAG 58.779 47.619 1.02 0.00 0.00 2.77
2593 2618 2.340210 TCACCACTGTTAGCTGCAAA 57.660 45.000 1.02 0.00 0.00 3.68
2594 2619 2.566833 ATCACCACTGTTAGCTGCAA 57.433 45.000 1.02 0.00 0.00 4.08
2595 2620 2.426522 GAATCACCACTGTTAGCTGCA 58.573 47.619 1.02 0.00 0.00 4.41
2596 2621 1.740025 GGAATCACCACTGTTAGCTGC 59.260 52.381 0.00 0.00 38.79 5.25
2597 2622 2.359900 GGGAATCACCACTGTTAGCTG 58.640 52.381 0.00 0.00 41.20 4.24
2598 2623 1.066143 CGGGAATCACCACTGTTAGCT 60.066 52.381 0.00 0.00 41.20 3.32
2599 2624 1.369625 CGGGAATCACCACTGTTAGC 58.630 55.000 0.00 0.00 41.20 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.