Multiple sequence alignment - TraesCS2A01G357700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G357700 chr2A 100.000 8372 0 0 1 8372 602136126 602127755 0.000000e+00 15461.0
1 TraesCS2A01G357700 chr2D 95.918 7104 205 33 695 7757 458918494 458911435 0.000000e+00 11433.0
2 TraesCS2A01G357700 chr2D 92.548 832 35 11 1 812 458919380 458918556 0.000000e+00 1168.0
3 TraesCS2A01G357700 chr2D 80.684 497 57 24 7758 8239 458911328 458910856 4.810000e-92 350.0
4 TraesCS2A01G357700 chr2D 78.221 326 58 12 8036 8356 615052985 615053302 6.630000e-46 196.0
5 TraesCS2A01G357700 chr2D 94.118 119 5 2 694 812 458918554 458918438 6.680000e-41 180.0
6 TraesCS2A01G357700 chr2D 90.769 130 12 0 8243 8372 458910723 458910594 3.110000e-39 174.0
7 TraesCS2A01G357700 chr2D 92.373 118 7 1 695 812 458918612 458918497 5.200000e-37 167.0
8 TraesCS2A01G357700 chr2D 87.356 87 10 1 8119 8205 458745537 458745452 1.920000e-16 99.0
9 TraesCS2A01G357700 chr2D 90.323 62 6 0 8138 8199 542905812 542905873 1.940000e-11 82.4
10 TraesCS2A01G357700 chr2D 83.951 81 12 1 8119 8199 458745450 458745371 9.010000e-10 76.8
11 TraesCS2A01G357700 chr2B 95.300 7106 210 43 694 7746 539811701 539804667 0.000000e+00 11158.0
12 TraesCS2A01G357700 chr2B 92.393 815 34 13 1 812 539812433 539811644 0.000000e+00 1136.0
13 TraesCS2A01G357700 chr2B 81.299 508 46 16 7758 8239 539803739 539803255 4.770000e-97 366.0
14 TraesCS2A01G357700 chr2B 83.951 81 13 0 8119 8199 539734548 539734468 2.510000e-10 78.7
15 TraesCS2A01G357700 chr1B 80.216 278 51 3 8083 8356 115370482 115370759 1.100000e-48 206.0
16 TraesCS2A01G357700 chr1A 76.887 212 37 7 8138 8347 73053860 73054061 8.880000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G357700 chr2A 602127755 602136126 8371 True 15461.000000 15461 100.000000 1 8372 1 chr2A.!!$R1 8371
1 TraesCS2A01G357700 chr2D 458910594 458919380 8786 True 2245.333333 11433 91.068333 1 8372 6 chr2D.!!$R2 8371
2 TraesCS2A01G357700 chr2B 539803255 539812433 9178 True 4220.000000 11158 89.664000 1 8239 3 chr2B.!!$R2 8238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 508 0.109532 TCGGATGTTTGCAGGGTTCA 59.890 50.000 0.00 0.0 0.00 3.18 F
507 509 0.240945 CGGATGTTTGCAGGGTTCAC 59.759 55.000 0.00 0.0 0.00 3.18 F
1138 1337 0.534412 CTCTGATGTGCTCCGGAAGT 59.466 55.000 5.23 0.0 0.00 3.01 F
1356 1555 0.793861 TATTCAACGAACTGGTGCGC 59.206 50.000 0.00 0.0 0.00 6.09 F
2038 2263 2.097825 TCTGGGACGAGTTAGCCTTAC 58.902 52.381 0.00 0.0 0.00 2.34 F
3254 3479 1.877443 GCTTAGTCTTGCCCGTTGAAA 59.123 47.619 0.00 0.0 0.00 2.69 F
4286 4511 3.011818 CACATTACAGATGCCTGCTTGA 58.988 45.455 0.00 0.0 44.16 3.02 F
5081 5316 0.036388 GCAAGATTGGTGACGAGGGA 60.036 55.000 0.00 0.0 0.00 4.20 F
5978 6224 0.475475 TAGAGGGGCCAATGCTGATG 59.525 55.000 4.39 0.0 37.74 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 2182 1.381056 ACCAAGCAAACTGGTGGCA 60.381 52.632 0.00 0.00 34.19 4.92 R
2014 2239 1.935327 GCTAACTCGTCCCAGAGCGT 61.935 60.000 0.00 0.00 41.77 5.07 R
2688 2913 2.152016 AGGCAAGTAGTTTTTCGGAGC 58.848 47.619 0.00 0.00 0.00 4.70 R
3246 3471 1.021202 TTGTCAGCACCTTTCAACGG 58.979 50.000 0.00 0.00 0.00 4.44 R
3629 3854 1.067060 GGTCAACAACACAAGCTTCCC 59.933 52.381 0.00 0.00 0.00 3.97 R
5075 5310 0.824109 TCAGGTGCAATAGTCCCTCG 59.176 55.000 0.00 0.00 0.00 4.63 R
5583 5824 3.305744 GCAAATTAAAGAGCGGGGAAACA 60.306 43.478 0.00 0.00 0.00 2.83 R
6821 7072 0.725117 CAAGGTGCGTTAATCCGGTC 59.275 55.000 0.00 0.00 0.00 4.79 R
7468 7721 0.103026 TCAGATCAATCCCTCGCGTG 59.897 55.000 5.77 2.75 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.793414 CCATTTTTCCTCCATCCCCC 58.207 55.000 0.00 0.00 0.00 5.40
112 113 1.606889 GGACCTGACCTGACCTCGT 60.607 63.158 0.00 0.00 0.00 4.18
166 167 2.203800 TGGAATCAGATACGACACGC 57.796 50.000 0.00 0.00 0.00 5.34
167 168 1.202371 TGGAATCAGATACGACACGCC 60.202 52.381 0.00 0.00 0.00 5.68
168 169 1.121240 GAATCAGATACGACACGCCG 58.879 55.000 0.00 0.00 0.00 6.46
169 170 0.870307 AATCAGATACGACACGCCGC 60.870 55.000 0.00 0.00 0.00 6.53
242 243 3.790437 CAGCATCGGGTGGCTCCT 61.790 66.667 5.46 0.00 38.56 3.69
255 256 1.452833 GCTCCTGTGGCCTGATTCC 60.453 63.158 3.32 0.00 0.00 3.01
309 310 6.540914 TGCAATAATAACTAACTTTAGGCGCT 59.459 34.615 7.64 0.00 35.08 5.92
310 311 7.066525 TGCAATAATAACTAACTTTAGGCGCTT 59.933 33.333 7.64 0.52 35.08 4.68
359 361 4.803426 CAGCCTCCGACGTGCTCC 62.803 72.222 0.00 0.00 31.77 4.70
389 391 3.554934 TCTGCTCTGATCCTCTCTTCTC 58.445 50.000 0.00 0.00 0.00 2.87
405 407 2.902705 TCTCCGGTTATTCCAATCCG 57.097 50.000 0.00 0.00 42.22 4.18
434 436 1.792367 GGCATTTTTGCAGTTCGTTCC 59.208 47.619 0.00 0.00 36.33 3.62
506 508 0.109532 TCGGATGTTTGCAGGGTTCA 59.890 50.000 0.00 0.00 0.00 3.18
507 509 0.240945 CGGATGTTTGCAGGGTTCAC 59.759 55.000 0.00 0.00 0.00 3.18
508 510 0.603065 GGATGTTTGCAGGGTTCACC 59.397 55.000 0.00 0.00 40.67 4.02
542 556 1.282875 GGTTGGTTGCTCTGTTCGC 59.717 57.895 0.00 0.00 0.00 4.70
543 557 1.444119 GGTTGGTTGCTCTGTTCGCA 61.444 55.000 0.00 0.00 35.22 5.10
574 588 0.672401 CGTGTAGGATTGGTTGGCGT 60.672 55.000 0.00 0.00 0.00 5.68
662 677 3.194062 TGCATTAGAATCGATTGCGTGA 58.806 40.909 16.96 0.00 38.98 4.35
677 692 1.801025 GCGTGAGGGTTTGGTTTTGTG 60.801 52.381 0.00 0.00 0.00 3.33
730 811 4.510038 AATTTCCTTACTGCAGTGCAAG 57.490 40.909 29.57 23.37 38.41 4.01
855 1053 0.875059 CGTTGAAGAAGGCCAAGTCC 59.125 55.000 5.01 0.00 0.00 3.85
868 1066 0.888619 CAAGTCCTAGTCACGCCTGA 59.111 55.000 0.00 0.00 0.00 3.86
919 1117 1.204941 GGAAGTACACGCACCTCTGAT 59.795 52.381 0.00 0.00 0.00 2.90
1138 1337 0.534412 CTCTGATGTGCTCCGGAAGT 59.466 55.000 5.23 0.00 0.00 3.01
1270 1469 4.070716 CTCTTCTTGGCTGAGTTGATGTT 58.929 43.478 0.00 0.00 0.00 2.71
1356 1555 0.793861 TATTCAACGAACTGGTGCGC 59.206 50.000 0.00 0.00 0.00 6.09
1444 1643 4.500127 GTGCCTGTTTGGTAAACTGTTTT 58.500 39.130 11.48 0.00 41.90 2.43
1703 1908 6.998802 ACTCTTATGTGTATTATCAGGGAGC 58.001 40.000 0.00 0.00 0.00 4.70
1762 1975 7.979537 GGTTTTTCAAGGTTCACTCAGTAATTT 59.020 33.333 0.00 0.00 0.00 1.82
1765 1978 8.974060 TTTCAAGGTTCACTCAGTAATTTACT 57.026 30.769 3.16 3.16 40.28 2.24
1766 1979 8.603242 TTCAAGGTTCACTCAGTAATTTACTC 57.397 34.615 6.10 0.00 36.76 2.59
1767 1980 7.159372 TCAAGGTTCACTCAGTAATTTACTCC 58.841 38.462 6.10 3.59 36.76 3.85
1957 2182 4.222588 TGCTTAAGGTAAATTGCAAGCCAT 59.777 37.500 4.94 0.51 38.04 4.40
2014 2239 7.823745 AAGAAAAACTTGAAGGCTTCTATCA 57.176 32.000 26.26 5.63 37.45 2.15
2038 2263 2.097825 TCTGGGACGAGTTAGCCTTAC 58.902 52.381 0.00 0.00 0.00 2.34
2062 2287 3.501828 TGACAACCAATTGATCTTCCACG 59.498 43.478 7.12 0.00 39.30 4.94
2262 2487 6.904011 GCAATTACTGTGATCGAATTTCTGAG 59.096 38.462 0.00 0.00 0.00 3.35
2288 2513 6.182507 TGGACTTAAAACAGTGTCAGGTAT 57.817 37.500 0.00 0.00 0.00 2.73
2295 2520 2.977914 ACAGTGTCAGGTATGTGATGC 58.022 47.619 0.00 0.00 0.00 3.91
2854 3079 7.272978 TGGCTAGTCTAAACCAATCTATGTTC 58.727 38.462 0.00 0.00 0.00 3.18
2862 3087 9.817809 TCTAAACCAATCTATGTTCTCATACAC 57.182 33.333 0.00 0.00 35.70 2.90
2863 3088 7.539712 AAACCAATCTATGTTCTCATACACG 57.460 36.000 0.00 0.00 35.70 4.49
2974 3199 6.100668 GTGGTGTTTCTTATCTGAGAGGTAC 58.899 44.000 0.00 0.00 0.00 3.34
3222 3447 2.860735 GCTGTTGATGCTACTTCCGTAG 59.139 50.000 0.00 0.00 44.77 3.51
3246 3471 7.906731 AGAAGTTTCTTTGGCTTAGTCTTGCC 61.907 42.308 9.00 9.00 41.19 4.52
3254 3479 1.877443 GCTTAGTCTTGCCCGTTGAAA 59.123 47.619 0.00 0.00 0.00 2.69
3938 4163 3.958018 AGGTAAATACGGCACCAATTGA 58.042 40.909 7.12 0.00 34.62 2.57
3948 4173 3.318839 CGGCACCAATTGATGACCATATT 59.681 43.478 3.20 0.00 0.00 1.28
3956 4181 7.124599 ACCAATTGATGACCATATTGTGAACAT 59.875 33.333 7.12 0.00 0.00 2.71
4054 4279 4.700692 TGTAGGTGTCTAGCTCAGTAGTTG 59.299 45.833 0.00 0.00 35.90 3.16
4137 4362 3.655615 TTGTACCCTTTTGTGACCTGT 57.344 42.857 0.00 0.00 0.00 4.00
4286 4511 3.011818 CACATTACAGATGCCTGCTTGA 58.988 45.455 0.00 0.00 44.16 3.02
4390 4615 5.453903 CGAAATCCTTGAGACACCCATCTAT 60.454 44.000 0.00 0.00 0.00 1.98
4413 4638 4.142293 TGCAAGCAACAAGTGTTTCACATA 60.142 37.500 0.00 0.00 36.74 2.29
4416 4641 6.640499 GCAAGCAACAAGTGTTTCACATATTA 59.360 34.615 0.00 0.00 36.74 0.98
4417 4642 7.168972 GCAAGCAACAAGTGTTTCACATATTAA 59.831 33.333 0.00 0.00 36.74 1.40
4593 4826 7.023575 GTGAATGCACTTCATTTTGTAGTAGG 58.976 38.462 12.60 0.00 45.36 3.18
4765 4998 6.013812 TGGCTGGTATTTTATCTTTTTGCCTT 60.014 34.615 0.00 0.00 36.73 4.35
4881 5114 6.012113 AGATCAAAATGGAGTGTCAATTGGA 58.988 36.000 5.42 0.00 0.00 3.53
4987 5222 4.434593 CCGGTATACTAAACAACACAACGC 60.435 45.833 2.25 0.00 0.00 4.84
5075 5310 2.421424 GGACTCATGCAAGATTGGTGAC 59.579 50.000 0.00 0.00 0.00 3.67
5081 5316 0.036388 GCAAGATTGGTGACGAGGGA 60.036 55.000 0.00 0.00 0.00 4.20
5162 5398 4.245660 GCAACTGTAGTAGCATGTCTCAA 58.754 43.478 0.00 0.00 0.00 3.02
5301 5537 8.239038 TCTCTACAGTTAGCAGTATAGCATTT 57.761 34.615 0.00 0.00 36.85 2.32
5346 5582 6.673106 TGCAGAAATTTGTATTGAGCGTTTA 58.327 32.000 0.00 0.00 0.00 2.01
5583 5824 6.994496 TCTGTTTCATGAACTGTTGATTCTCT 59.006 34.615 7.89 0.00 39.08 3.10
5592 5833 2.744202 CTGTTGATTCTCTGTTTCCCCG 59.256 50.000 0.00 0.00 0.00 5.73
5666 5907 9.787532 GTTACATTATTCTTGCTGCTAATTTGA 57.212 29.630 0.00 0.00 0.00 2.69
5707 5948 4.002982 TCTGCTGTAACCAATGTAAGCTG 58.997 43.478 0.00 0.00 30.76 4.24
5776 6019 6.759827 GGCTTCGTCTAATGATTGGTTACTAA 59.240 38.462 0.00 0.00 0.00 2.24
5903 6149 1.148273 GGTCAGGTGGCTTGTGTCA 59.852 57.895 0.00 0.00 0.00 3.58
5946 6192 7.581213 TCACACAATTCAAGAAATACCACTT 57.419 32.000 0.00 0.00 0.00 3.16
5978 6224 0.475475 TAGAGGGGCCAATGCTGATG 59.525 55.000 4.39 0.00 37.74 3.07
6243 6494 9.027129 TCTTACGGTCGATATTATTTTTCACTG 57.973 33.333 0.00 0.00 0.00 3.66
6427 6678 6.833416 AGCTCTTACAAGTATGTCTCTCAGAT 59.167 38.462 0.00 0.00 41.05 2.90
6473 6724 4.385825 AGTAACTCAGCCAAATTTCGTCA 58.614 39.130 0.00 0.00 0.00 4.35
6588 6839 9.817809 GTGTTAATAACTGGATCATGAAGAGTA 57.182 33.333 0.00 0.00 0.00 2.59
6677 6928 7.519002 AGTGATGCTAAATTTCTGTCGTTTAC 58.481 34.615 0.00 0.00 0.00 2.01
6739 6990 4.309950 AGTGGTTCGCCCGGTGTC 62.310 66.667 0.00 0.00 36.08 3.67
6766 7017 7.627513 GCAATAATTTGTGGTCTTTCGGATGTA 60.628 37.037 0.00 0.00 35.17 2.29
6804 7055 6.327934 TCACGTTGGCTAAAGTCTACTTATC 58.672 40.000 0.00 0.00 34.61 1.75
6821 7072 2.039818 ATCTGGTCAATGCAGCTCTG 57.960 50.000 0.00 0.00 0.00 3.35
6906 7157 5.614308 TCAGATGTAAGGGTGCATGATTAG 58.386 41.667 0.00 0.00 29.11 1.73
6913 7164 6.543465 TGTAAGGGTGCATGATTAGATCAAAG 59.457 38.462 0.00 0.00 43.50 2.77
6914 7165 5.378230 AGGGTGCATGATTAGATCAAAGA 57.622 39.130 0.00 0.00 43.50 2.52
6915 7166 5.950023 AGGGTGCATGATTAGATCAAAGAT 58.050 37.500 0.00 0.00 43.50 2.40
6916 7167 6.002704 AGGGTGCATGATTAGATCAAAGATC 58.997 40.000 0.00 0.00 43.50 2.75
6917 7168 5.106791 GGGTGCATGATTAGATCAAAGATCG 60.107 44.000 0.00 0.00 43.50 3.69
7117 7369 0.104304 AATCTCGGGTACGTGCATCC 59.896 55.000 5.86 0.00 41.85 3.51
7144 7397 2.914695 TCTTTCTTTCGTTTCCCCGA 57.085 45.000 0.00 0.00 34.52 5.14
7170 7423 2.430694 TCCGGTATGATCCTCACAGTTG 59.569 50.000 0.00 0.00 0.00 3.16
7175 7428 6.150318 CGGTATGATCCTCACAGTTGTATAC 58.850 44.000 0.00 0.00 0.00 1.47
7230 7483 2.439701 CTGTCGAGCTCCCGGGTA 60.440 66.667 22.86 6.41 0.00 3.69
7423 7676 1.579698 TAGCCACTACGAGTAGAGCG 58.420 55.000 16.27 5.08 39.31 5.03
7468 7721 7.911205 GTCTGTACATACATAGTCTTGTGAGTC 59.089 40.741 6.52 0.00 35.36 3.36
7503 7759 5.840715 TGATCTGATGATAGACTGAACTGC 58.159 41.667 0.00 0.00 32.19 4.40
7504 7760 5.597594 TGATCTGATGATAGACTGAACTGCT 59.402 40.000 0.00 0.00 32.19 4.24
7505 7761 5.259832 TCTGATGATAGACTGAACTGCTG 57.740 43.478 0.00 0.00 0.00 4.41
7581 7837 2.167861 GTCGTGCTTCCTCCGCATC 61.168 63.158 0.00 0.00 39.89 3.91
7643 7899 1.634702 TGGTGTTTGCGAAGTTTTGC 58.365 45.000 0.00 0.00 38.09 3.68
7669 7925 1.479323 GGTGCTACGATCCTGGTTACA 59.521 52.381 0.00 0.00 0.00 2.41
7678 7934 4.223032 ACGATCCTGGTTACAATTCTCAGT 59.777 41.667 0.00 0.00 0.00 3.41
7699 7955 1.378514 GGATCGCTTTCCCTTGGCA 60.379 57.895 0.00 0.00 0.00 4.92
7705 7961 0.244721 GCTTTCCCTTGGCATGTGAC 59.755 55.000 0.00 0.00 0.00 3.67
7706 7962 0.523072 CTTTCCCTTGGCATGTGACG 59.477 55.000 0.00 0.00 0.00 4.35
7707 7963 1.523154 TTTCCCTTGGCATGTGACGC 61.523 55.000 0.00 0.00 0.00 5.19
7769 8954 5.303589 AGCAGCAGCCAAATATATTTCATGT 59.696 36.000 7.76 0.00 43.56 3.21
7788 8973 3.851098 TGTTACCAAACAAACCACAAGC 58.149 40.909 0.00 0.00 42.60 4.01
7793 8978 1.928503 CAAACAAACCACAAGCAGCAG 59.071 47.619 0.00 0.00 0.00 4.24
7806 8991 4.701651 ACAAGCAGCAGCAACTAAATCATA 59.298 37.500 3.17 0.00 45.49 2.15
7864 9049 3.289836 CATGCCCTTCAATCCATACACA 58.710 45.455 0.00 0.00 0.00 3.72
7901 9086 5.998363 AGGCCTTTCAGTTCAACTAAACTAG 59.002 40.000 0.00 0.00 37.38 2.57
7902 9087 5.995897 GGCCTTTCAGTTCAACTAAACTAGA 59.004 40.000 0.00 0.00 37.38 2.43
7903 9088 6.655425 GGCCTTTCAGTTCAACTAAACTAGAT 59.345 38.462 0.00 0.00 37.38 1.98
7904 9089 7.361286 GGCCTTTCAGTTCAACTAAACTAGATG 60.361 40.741 0.00 0.00 37.38 2.90
7905 9090 7.522374 CCTTTCAGTTCAACTAAACTAGATGC 58.478 38.462 0.00 0.00 37.38 3.91
7907 9092 7.891183 TTCAGTTCAACTAAACTAGATGCTC 57.109 36.000 0.00 0.00 37.38 4.26
7908 9093 6.398918 TCAGTTCAACTAAACTAGATGCTCC 58.601 40.000 0.00 0.00 37.38 4.70
7909 9094 5.582665 CAGTTCAACTAAACTAGATGCTCCC 59.417 44.000 0.00 0.00 37.38 4.30
7910 9095 5.485708 AGTTCAACTAAACTAGATGCTCCCT 59.514 40.000 0.00 0.00 37.71 4.20
7916 9101 4.640771 AAACTAGATGCTCCCTCACAAA 57.359 40.909 0.00 0.00 0.00 2.83
7918 9103 4.640771 ACTAGATGCTCCCTCACAAAAA 57.359 40.909 0.00 0.00 0.00 1.94
7945 9130 8.798859 AAAACTAAACTAGATGCTCATGATGT 57.201 30.769 0.00 0.00 0.00 3.06
7948 9133 7.790027 ACTAAACTAGATGCTCATGATGTTCT 58.210 34.615 0.00 1.36 0.00 3.01
7959 9144 3.118665 TCATGATGTTCTCTTCGCATGGA 60.119 43.478 0.00 0.00 35.19 3.41
7960 9145 3.333029 TGATGTTCTCTTCGCATGGAA 57.667 42.857 0.00 0.00 0.00 3.53
7961 9146 3.002791 TGATGTTCTCTTCGCATGGAAC 58.997 45.455 0.00 0.00 38.64 3.62
7983 9168 4.082125 CAAAACAGCTGGGGAGAACTTAT 58.918 43.478 19.93 0.00 0.00 1.73
7998 9183 7.040271 GGGAGAACTTATACTAGAAGCACCTAG 60.040 44.444 0.00 9.89 41.36 3.02
8018 9203 6.213600 ACCTAGGAGTTAGATGTGAACACAAT 59.786 38.462 17.98 6.51 45.41 2.71
8032 9217 8.641499 TGTGAACACAATTAAAAATGAAGGAC 57.359 30.769 5.11 0.00 38.56 3.85
8033 9218 7.708752 TGTGAACACAATTAAAAATGAAGGACC 59.291 33.333 5.11 0.00 38.56 4.46
8054 9239 6.015603 GGACCTTTATATTAGACGCACCTACT 60.016 42.308 0.00 0.00 0.00 2.57
8056 9241 8.108551 ACCTTTATATTAGACGCACCTACTAG 57.891 38.462 0.00 0.00 0.00 2.57
8063 9248 7.820578 ATTAGACGCACCTACTAGTTAGATT 57.179 36.000 0.00 0.00 0.00 2.40
8115 9325 1.166531 AAACTTGTGGAGCCTCGTGC 61.167 55.000 0.00 0.00 41.71 5.34
8128 9338 4.210832 GCCTCGTGCTGTAATTAAATCC 57.789 45.455 0.00 0.00 36.87 3.01
8131 9341 4.273480 CCTCGTGCTGTAATTAAATCCTGG 59.727 45.833 0.00 0.00 0.00 4.45
8133 9343 5.680619 TCGTGCTGTAATTAAATCCTGGAT 58.319 37.500 2.57 2.57 0.00 3.41
8134 9344 6.822442 TCGTGCTGTAATTAAATCCTGGATA 58.178 36.000 10.13 0.00 0.00 2.59
8136 9346 6.929049 CGTGCTGTAATTAAATCCTGGATAGA 59.071 38.462 10.13 0.00 0.00 1.98
8137 9347 7.604164 CGTGCTGTAATTAAATCCTGGATAGAT 59.396 37.037 10.13 2.35 0.00 1.98
8138 9348 9.289782 GTGCTGTAATTAAATCCTGGATAGATT 57.710 33.333 10.13 12.19 35.46 2.40
8139 9349 9.288576 TGCTGTAATTAAATCCTGGATAGATTG 57.711 33.333 10.13 1.58 34.23 2.67
8140 9350 8.239998 GCTGTAATTAAATCCTGGATAGATTGC 58.760 37.037 10.13 13.23 34.23 3.56
8141 9351 9.288576 CTGTAATTAAATCCTGGATAGATTGCA 57.711 33.333 10.13 16.38 34.23 4.08
8142 9352 9.812347 TGTAATTAAATCCTGGATAGATTGCAT 57.188 29.630 10.13 0.00 34.23 3.96
8144 9354 8.945195 AATTAAATCCTGGATAGATTGCATGA 57.055 30.769 10.13 0.00 34.23 3.07
8145 9355 7.991084 TTAAATCCTGGATAGATTGCATGAG 57.009 36.000 10.13 0.00 34.23 2.90
8146 9356 5.837770 AATCCTGGATAGATTGCATGAGA 57.162 39.130 10.13 0.00 32.74 3.27
8147 9357 5.837770 ATCCTGGATAGATTGCATGAGAA 57.162 39.130 7.59 0.00 0.00 2.87
8186 9408 6.042093 TGACTCAAGACCTTAAATCACTCACT 59.958 38.462 0.00 0.00 0.00 3.41
8190 9412 7.054124 TCAAGACCTTAAATCACTCACTGTTT 58.946 34.615 0.00 0.00 0.00 2.83
8212 9434 4.671377 TGTTGTGCACAAAAGATGACTTC 58.329 39.130 32.61 16.70 37.63 3.01
8232 9454 8.260114 TGACTTCAAATGTCATCTTATAGAGCA 58.740 33.333 0.00 0.00 39.23 4.26
8234 9456 7.497249 ACTTCAAATGTCATCTTATAGAGCACC 59.503 37.037 0.00 0.00 0.00 5.01
8235 9457 7.129457 TCAAATGTCATCTTATAGAGCACCT 57.871 36.000 0.00 0.00 0.00 4.00
8238 9460 9.330063 CAAATGTCATCTTATAGAGCACCTAAA 57.670 33.333 0.00 0.00 0.00 1.85
8239 9461 9.905713 AAATGTCATCTTATAGAGCACCTAAAA 57.094 29.630 0.00 0.00 0.00 1.52
8240 9462 8.894768 ATGTCATCTTATAGAGCACCTAAAAC 57.105 34.615 0.00 0.00 0.00 2.43
8241 9463 7.847096 TGTCATCTTATAGAGCACCTAAAACA 58.153 34.615 0.00 0.00 0.00 2.83
8242 9464 7.764443 TGTCATCTTATAGAGCACCTAAAACAC 59.236 37.037 0.00 0.00 0.00 3.32
8243 9465 7.982354 GTCATCTTATAGAGCACCTAAAACACT 59.018 37.037 0.00 0.00 0.00 3.55
8244 9466 9.197306 TCATCTTATAGAGCACCTAAAACACTA 57.803 33.333 0.00 0.00 0.00 2.74
8245 9467 9.469807 CATCTTATAGAGCACCTAAAACACTAG 57.530 37.037 0.00 0.00 0.00 2.57
8246 9468 8.818622 TCTTATAGAGCACCTAAAACACTAGA 57.181 34.615 0.00 0.00 0.00 2.43
8247 9469 8.684520 TCTTATAGAGCACCTAAAACACTAGAC 58.315 37.037 0.00 0.00 0.00 2.59
8251 9473 5.013183 AGAGCACCTAAAACACTAGACCATT 59.987 40.000 0.00 0.00 0.00 3.16
8291 9641 1.597854 TGGACGGTTGCAGCTTGAG 60.598 57.895 0.00 0.00 0.00 3.02
8338 9688 1.313091 GGCATCGGGACCTTTCCAAC 61.313 60.000 0.00 0.00 44.98 3.77
8353 9703 8.664669 ACCTTTCCAACATAGATAATGGTTTT 57.335 30.769 0.00 0.00 40.16 2.43
8354 9704 8.531146 ACCTTTCCAACATAGATAATGGTTTTG 58.469 33.333 0.00 0.00 40.16 2.44
8361 9711 6.275335 ACATAGATAATGGTTTTGCATGTGC 58.725 36.000 0.00 0.00 40.16 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.275421 GGGAGGGAGGAGGAAAGGTG 61.275 65.000 0.00 0.00 0.00 4.00
112 113 2.251371 CGAGCGACAGTGACGACA 59.749 61.111 18.96 0.00 0.00 4.35
145 146 2.927477 GCGTGTCGTATCTGATTCCAAA 59.073 45.455 0.00 0.00 0.00 3.28
167 168 3.913573 CTGAAATCGTCGCCGGCG 61.914 66.667 42.13 42.13 41.35 6.46
168 169 4.223964 GCTGAAATCGTCGCCGGC 62.224 66.667 19.07 19.07 33.95 6.13
169 170 3.564027 GGCTGAAATCGTCGCCGG 61.564 66.667 0.00 0.00 36.60 6.13
255 256 1.597663 GAAATTACCTGATCGGGCGTG 59.402 52.381 21.17 0.00 36.97 5.34
359 361 0.754957 ATCAGAGCAGAGACGGAGGG 60.755 60.000 0.00 0.00 0.00 4.30
405 407 3.004862 CTGCAAAAATGCCCAAATCTCC 58.995 45.455 0.00 0.00 0.00 3.71
450 452 3.429141 CGCACCAAGCTCTGCAGG 61.429 66.667 15.13 5.82 42.61 4.85
451 453 1.962822 TTCGCACCAAGCTCTGCAG 60.963 57.895 7.63 7.63 42.61 4.41
488 490 0.240945 GTGAACCCTGCAAACATCCG 59.759 55.000 0.00 0.00 0.00 4.18
490 492 0.240945 CGGTGAACCCTGCAAACATC 59.759 55.000 0.00 0.00 0.00 3.06
493 495 1.310904 TTACGGTGAACCCTGCAAAC 58.689 50.000 0.00 0.00 0.00 2.93
506 508 1.445942 CCCTGCGGATGATTACGGT 59.554 57.895 0.00 0.00 0.00 4.83
507 509 1.301716 CCCCTGCGGATGATTACGG 60.302 63.158 0.00 0.00 0.00 4.02
508 510 0.179056 AACCCCTGCGGATGATTACG 60.179 55.000 0.00 0.00 34.64 3.18
542 556 0.729116 CTACACGCAATTGAGCCCTG 59.271 55.000 10.34 3.12 0.00 4.45
543 557 0.392998 CCTACACGCAATTGAGCCCT 60.393 55.000 10.34 0.00 0.00 5.19
574 588 1.169661 GGCGTCCAATCACCACACAA 61.170 55.000 0.00 0.00 0.00 3.33
662 677 2.495669 CAGTCACACAAAACCAAACCCT 59.504 45.455 0.00 0.00 0.00 4.34
772 969 3.754068 TGCACTGCAGCAAGGAAG 58.246 55.556 15.27 0.00 42.46 3.46
813 1010 4.986659 GCCATCCTGCATCATCAATAAAAC 59.013 41.667 0.00 0.00 0.00 2.43
814 1011 4.261698 CGCCATCCTGCATCATCAATAAAA 60.262 41.667 0.00 0.00 0.00 1.52
855 1053 2.672961 TCCATTTCAGGCGTGACTAG 57.327 50.000 8.96 1.58 30.10 2.57
868 1066 3.808618 GCTCGATTCCCTAGCATCCATTT 60.809 47.826 0.00 0.00 36.26 2.32
904 1102 3.318275 GGATAGAATCAGAGGTGCGTGTA 59.682 47.826 0.00 0.00 0.00 2.90
919 1117 4.081476 CAGTGTCACAGACCATGGATAGAA 60.081 45.833 21.47 0.00 0.00 2.10
1059 1258 1.270305 CCGCTCTTGGAGAACTTGACA 60.270 52.381 0.00 0.00 0.00 3.58
1270 1469 3.719268 ACTTATGTCCTGCAATCACCA 57.281 42.857 0.00 0.00 0.00 4.17
1356 1555 5.528043 ACTCCTCATTGATGTAGCTACAG 57.472 43.478 29.05 16.54 39.92 2.74
1444 1643 8.849168 ACAAAACATCACTGTCTATTTCATTCA 58.151 29.630 0.00 0.00 33.36 2.57
1703 1908 5.111989 TGTCTGATAAGATGCCTTTCTTCG 58.888 41.667 0.00 0.00 37.20 3.79
1957 2182 1.381056 ACCAAGCAAACTGGTGGCA 60.381 52.632 0.00 0.00 34.19 4.92
2014 2239 1.935327 GCTAACTCGTCCCAGAGCGT 61.935 60.000 0.00 0.00 41.77 5.07
2038 2263 5.404946 GTGGAAGATCAATTGGTTGTCATG 58.595 41.667 5.42 0.00 36.69 3.07
2062 2287 7.276658 CAGACAAATATCCTGATACCGAATAGC 59.723 40.741 0.00 0.00 0.00 2.97
2163 2388 4.952335 TCAGTCACATCAGAGCAAGAGATA 59.048 41.667 0.00 0.00 0.00 1.98
2262 2487 4.320494 CCTGACACTGTTTTAAGTCCATGC 60.320 45.833 0.00 0.00 0.00 4.06
2288 2513 3.432186 GCTACTGGACTATTGGCATCACA 60.432 47.826 0.00 0.00 0.00 3.58
2295 2520 2.555199 GCACAGCTACTGGACTATTGG 58.445 52.381 0.00 0.00 35.51 3.16
2688 2913 2.152016 AGGCAAGTAGTTTTTCGGAGC 58.848 47.619 0.00 0.00 0.00 4.70
2821 3046 7.490657 TTGGTTTAGACTAGCCATAGAAGAA 57.509 36.000 8.20 0.00 32.93 2.52
2854 3079 5.519927 TGCATTGTAGATCAACGTGTATGAG 59.480 40.000 0.00 0.00 38.97 2.90
2862 3087 3.365832 GGCATTGCATTGTAGATCAACG 58.634 45.455 11.39 0.00 38.97 4.10
2863 3088 3.382546 AGGGCATTGCATTGTAGATCAAC 59.617 43.478 11.39 0.00 38.97 3.18
3008 3233 6.730960 AAACGAAGAGTTAGTCAACAACAA 57.269 33.333 0.00 0.00 43.37 2.83
3009 3234 6.730960 AAAACGAAGAGTTAGTCAACAACA 57.269 33.333 0.00 0.00 43.37 3.33
3010 3235 9.712359 AATAAAAACGAAGAGTTAGTCAACAAC 57.288 29.630 0.00 0.00 43.37 3.32
3222 3447 5.215903 GCAAGACTAAGCCAAAGAAACTTC 58.784 41.667 0.00 0.00 0.00 3.01
3246 3471 1.021202 TTGTCAGCACCTTTCAACGG 58.979 50.000 0.00 0.00 0.00 4.44
3254 3479 5.165961 ACTATACACAATTGTCAGCACCT 57.834 39.130 8.48 0.00 37.15 4.00
3540 3765 9.399797 TCTCATCATTTTTACATAGAACAGCAT 57.600 29.630 0.00 0.00 0.00 3.79
3629 3854 1.067060 GGTCAACAACACAAGCTTCCC 59.933 52.381 0.00 0.00 0.00 3.97
3687 3912 5.927281 ATAGTAAGTTCAGGCCTCGTAAA 57.073 39.130 0.00 0.00 0.00 2.01
3938 4163 6.656902 AGAGTCATGTTCACAATATGGTCAT 58.343 36.000 0.00 0.00 31.67 3.06
3948 4173 7.552687 AGAAAGTAACAAAGAGTCATGTTCACA 59.447 33.333 15.17 0.00 40.14 3.58
3956 4181 7.726216 TGATCTCAGAAAGTAACAAAGAGTCA 58.274 34.615 0.00 0.00 0.00 3.41
4054 4279 2.060326 CATTGCGGATCCATCAATGC 57.940 50.000 28.88 17.83 40.08 3.56
4137 4362 4.974645 AAGGAACACACTTGGACAGATA 57.025 40.909 0.00 0.00 0.00 1.98
4286 4511 9.078990 TGATTAATACTCACCTCGTAGATGAAT 57.921 33.333 0.00 0.00 33.89 2.57
4338 4563 5.409643 AGCATGTTCGAATGTTGCTATAC 57.590 39.130 22.82 0.95 41.58 1.47
4351 4576 6.712241 AGGATTTCGATATTAGCATGTTCG 57.288 37.500 0.00 0.00 0.00 3.95
4390 4615 2.029560 TGTGAAACACTTGTTGCTTGCA 60.030 40.909 1.77 0.00 45.67 4.08
4416 4641 9.829507 TGACCAAATCAATCAAGTAAACATTTT 57.170 25.926 0.00 0.00 33.02 1.82
4422 4647 9.699410 ATAGGATGACCAAATCAATCAAGTAAA 57.301 29.630 0.00 0.00 41.93 2.01
4578 4811 7.816031 CGGTACTTTCTCCTACTACAAAATGAA 59.184 37.037 0.00 0.00 0.00 2.57
4593 4826 1.910688 CGCCTTCTCGGTACTTTCTC 58.089 55.000 0.00 0.00 34.25 2.87
4881 5114 8.854614 AGATTTAATACAAGAGACAAGTGCTT 57.145 30.769 0.00 0.00 0.00 3.91
4987 5222 4.703897 ACATCATATACAAACTGTCCCCG 58.296 43.478 0.00 0.00 0.00 5.73
5075 5310 0.824109 TCAGGTGCAATAGTCCCTCG 59.176 55.000 0.00 0.00 0.00 4.63
5346 5582 3.793559 AGCGCTAAAATCGTCTAACCAT 58.206 40.909 8.99 0.00 0.00 3.55
5583 5824 3.305744 GCAAATTAAAGAGCGGGGAAACA 60.306 43.478 0.00 0.00 0.00 2.83
5592 5833 6.861572 ACTAAAACGAAGGCAAATTAAAGAGC 59.138 34.615 0.00 0.00 0.00 4.09
5666 5907 5.301298 AGCAGAAGCAAGTTCAATTTTCTCT 59.699 36.000 0.00 0.00 45.49 3.10
5738 5979 3.746492 AGACGAAGCCAACAAGACATAAC 59.254 43.478 0.00 0.00 0.00 1.89
5750 5991 3.627395 ACCAATCATTAGACGAAGCCA 57.373 42.857 0.00 0.00 0.00 4.75
5903 6149 3.320826 GTGAACCAGTGGTTTATGCCTTT 59.679 43.478 28.00 2.70 46.95 3.11
5946 6192 3.435026 GGCCCCTCTATCATGCAACTTTA 60.435 47.826 0.00 0.00 0.00 1.85
5978 6224 4.006989 TGCCAAACATACCACTGTACATC 58.993 43.478 0.00 0.00 0.00 3.06
6184 6430 9.174166 ACACATAAACCTCATAATAACACTTCC 57.826 33.333 0.00 0.00 0.00 3.46
6427 6678 2.025981 CCATCATCACAAGACCTGGGAA 60.026 50.000 0.00 0.00 42.11 3.97
6473 6724 5.715434 ACCCAATAACTAACGCAACAAAT 57.285 34.783 0.00 0.00 0.00 2.32
6588 6839 1.661463 TGGAAGTGCCCTGAAGAGAT 58.339 50.000 0.00 0.00 34.97 2.75
6596 6847 1.616994 GCAAGGTTATGGAAGTGCCCT 60.617 52.381 0.00 0.00 34.97 5.19
6677 6928 5.590259 CCCATATTACAGTTCCCAAGTTCTG 59.410 44.000 0.00 0.00 0.00 3.02
6686 6937 6.072452 GCTATTCTTGCCCATATTACAGTTCC 60.072 42.308 0.00 0.00 0.00 3.62
6716 6967 2.390599 CGGGCGAACCACTGTCATG 61.391 63.158 0.00 0.00 40.22 3.07
6739 6990 3.851403 CCGAAAGACCACAAATTATTGCG 59.149 43.478 0.00 0.00 40.34 4.85
6766 7017 4.380444 GCCAACGTGATGTTATGACCAAAT 60.380 41.667 0.00 0.00 39.29 2.32
6804 7055 1.085091 GTCAGAGCTGCATTGACCAG 58.915 55.000 19.53 0.00 36.17 4.00
6821 7072 0.725117 CAAGGTGCGTTAATCCGGTC 59.275 55.000 0.00 0.00 0.00 4.79
6906 7157 9.970243 GTCATATGATTGAATCGATCTTTGATC 57.030 33.333 9.02 0.00 0.00 2.92
6913 7164 8.651588 GTTAGGTGTCATATGATTGAATCGATC 58.348 37.037 9.02 3.53 0.00 3.69
6914 7165 8.150296 TGTTAGGTGTCATATGATTGAATCGAT 58.850 33.333 9.02 0.00 0.00 3.59
6915 7166 7.496747 TGTTAGGTGTCATATGATTGAATCGA 58.503 34.615 9.02 0.00 0.00 3.59
6916 7167 7.713764 TGTTAGGTGTCATATGATTGAATCG 57.286 36.000 9.02 0.00 0.00 3.34
6917 7168 8.509690 CCATGTTAGGTGTCATATGATTGAATC 58.490 37.037 9.02 0.00 0.00 2.52
6929 7181 3.135712 AGTGACAACCATGTTAGGTGTCA 59.864 43.478 14.90 14.90 42.25 3.58
7117 7369 4.613031 GGAAACGAAAGAAAGAATGCGAAG 59.387 41.667 0.00 0.00 0.00 3.79
7170 7423 0.532196 GGCCTGCGACAAGGGTATAC 60.532 60.000 0.00 0.00 37.84 1.47
7175 7428 4.020617 TCAGGCCTGCGACAAGGG 62.021 66.667 28.91 0.46 37.84 3.95
7468 7721 0.103026 TCAGATCAATCCCTCGCGTG 59.897 55.000 5.77 2.75 0.00 5.34
7503 7759 3.606777 CACACCGTAGACGACATAAACAG 59.393 47.826 3.07 0.00 43.02 3.16
7504 7760 3.567530 CACACCGTAGACGACATAAACA 58.432 45.455 3.07 0.00 43.02 2.83
7505 7761 2.343544 GCACACCGTAGACGACATAAAC 59.656 50.000 3.07 0.00 43.02 2.01
7581 7837 7.523709 GCCATTACATTTTACATACCATCCCAG 60.524 40.741 0.00 0.00 0.00 4.45
7728 7994 3.673052 GCTGCTGTTTGTGAGTTGTTTGA 60.673 43.478 0.00 0.00 0.00 2.69
7769 8954 3.677424 GCTGCTTGTGGTTTGTTTGGTAA 60.677 43.478 0.00 0.00 0.00 2.85
7780 8965 0.179020 TAGTTGCTGCTGCTTGTGGT 60.179 50.000 17.00 0.00 40.48 4.16
7782 8967 2.780065 TTTAGTTGCTGCTGCTTGTG 57.220 45.000 17.00 0.00 40.48 3.33
7788 8973 7.700505 TCATCTTTATGATTTAGTTGCTGCTG 58.299 34.615 0.00 0.00 37.20 4.41
7831 9016 5.912149 TGAAGGGCATGTCCTTAATCTAT 57.088 39.130 31.11 8.01 46.31 1.98
7832 9017 5.708736 TTGAAGGGCATGTCCTTAATCTA 57.291 39.130 31.11 13.64 46.31 1.98
7833 9018 4.591321 TTGAAGGGCATGTCCTTAATCT 57.409 40.909 31.11 9.70 46.31 2.40
7834 9019 4.279420 GGATTGAAGGGCATGTCCTTAATC 59.721 45.833 31.11 30.22 46.31 1.75
7864 9049 3.073062 TGAAAGGCCTGTTCTTAGCTCTT 59.927 43.478 5.69 0.00 0.00 2.85
7920 9105 8.798859 ACATCATGAGCATCTAGTTTAGTTTT 57.201 30.769 0.09 0.00 34.92 2.43
7921 9106 8.798859 AACATCATGAGCATCTAGTTTAGTTT 57.201 30.769 0.09 0.00 34.92 2.66
7926 9111 6.887013 AGAGAACATCATGAGCATCTAGTTT 58.113 36.000 0.09 0.00 34.92 2.66
7927 9112 6.482898 AGAGAACATCATGAGCATCTAGTT 57.517 37.500 0.09 0.00 34.92 2.24
7929 9114 5.630264 CGAAGAGAACATCATGAGCATCTAG 59.370 44.000 0.09 0.00 34.92 2.43
7930 9115 5.527033 CGAAGAGAACATCATGAGCATCTA 58.473 41.667 0.09 0.00 34.92 1.98
7932 9117 3.059733 GCGAAGAGAACATCATGAGCATC 60.060 47.826 0.09 0.00 0.00 3.91
7933 9118 2.871022 GCGAAGAGAACATCATGAGCAT 59.129 45.455 0.09 0.00 0.00 3.79
7934 9119 2.274437 GCGAAGAGAACATCATGAGCA 58.726 47.619 0.09 0.00 0.00 4.26
7935 9120 2.274437 TGCGAAGAGAACATCATGAGC 58.726 47.619 0.09 0.00 0.00 4.26
7936 9121 3.247886 CCATGCGAAGAGAACATCATGAG 59.752 47.826 0.09 0.00 34.79 2.90
7937 9122 3.118665 TCCATGCGAAGAGAACATCATGA 60.119 43.478 0.00 0.00 34.79 3.07
7938 9123 3.200483 TCCATGCGAAGAGAACATCATG 58.800 45.455 0.00 0.00 0.00 3.07
7939 9124 3.548745 TCCATGCGAAGAGAACATCAT 57.451 42.857 0.00 0.00 0.00 2.45
7940 9125 3.002791 GTTCCATGCGAAGAGAACATCA 58.997 45.455 3.92 0.00 38.74 3.07
7945 9130 3.629855 TGTTTTGTTCCATGCGAAGAGAA 59.370 39.130 0.00 0.00 0.00 2.87
7948 9133 2.287547 GCTGTTTTGTTCCATGCGAAGA 60.288 45.455 0.00 0.00 0.00 2.87
7959 9144 2.031870 GTTCTCCCCAGCTGTTTTGTT 58.968 47.619 13.81 0.00 0.00 2.83
7960 9145 1.215423 AGTTCTCCCCAGCTGTTTTGT 59.785 47.619 13.81 0.00 0.00 2.83
7961 9146 1.986882 AGTTCTCCCCAGCTGTTTTG 58.013 50.000 13.81 0.00 0.00 2.44
7962 9147 2.755952 AAGTTCTCCCCAGCTGTTTT 57.244 45.000 13.81 0.00 0.00 2.43
7963 9148 4.536489 AGTATAAGTTCTCCCCAGCTGTTT 59.464 41.667 13.81 0.00 0.00 2.83
7972 9157 5.599242 AGGTGCTTCTAGTATAAGTTCTCCC 59.401 44.000 0.00 0.00 0.00 4.30
7973 9158 6.718522 AGGTGCTTCTAGTATAAGTTCTCC 57.281 41.667 0.00 0.00 0.00 3.71
7983 9168 6.572182 TCTAACTCCTAGGTGCTTCTAGTA 57.428 41.667 9.08 0.00 36.02 1.82
7998 9183 9.959749 TTTTTAATTGTGTTCACATCTAACTCC 57.040 29.630 6.47 0.00 0.00 3.85
8032 9217 8.108551 ACTAGTAGGTGCGTCTAATATAAAGG 57.891 38.462 1.45 0.00 0.00 3.11
8040 9225 7.337689 TCAAATCTAACTAGTAGGTGCGTCTAA 59.662 37.037 0.00 0.00 0.00 2.10
8045 9230 6.034683 GTGTTCAAATCTAACTAGTAGGTGCG 59.965 42.308 0.00 0.00 0.00 5.34
8056 9241 9.944663 TCATTGTTAGTTGTGTTCAAATCTAAC 57.055 29.630 13.05 13.05 40.09 2.34
8089 9274 4.261801 GAGGCTCCACAAGTTTGCTTATA 58.738 43.478 2.15 0.00 32.87 0.98
8092 9277 1.322442 GAGGCTCCACAAGTTTGCTT 58.678 50.000 2.15 0.00 34.82 3.91
8115 9325 9.288576 TGCAATCTATCCAGGATTTAATTACAG 57.711 33.333 7.44 0.00 31.90 2.74
8128 9338 5.277876 GCAAGTTCTCATGCAATCTATCCAG 60.278 44.000 0.00 0.00 42.12 3.86
8139 9349 6.088616 GTCAAAAGTTATGCAAGTTCTCATGC 59.911 38.462 0.00 0.00 42.86 4.06
8140 9350 7.365741 AGTCAAAAGTTATGCAAGTTCTCATG 58.634 34.615 0.00 0.00 0.00 3.07
8141 9351 7.229306 TGAGTCAAAAGTTATGCAAGTTCTCAT 59.771 33.333 0.00 0.00 27.56 2.90
8142 9352 6.542005 TGAGTCAAAAGTTATGCAAGTTCTCA 59.458 34.615 0.00 0.00 28.92 3.27
8143 9353 6.959361 TGAGTCAAAAGTTATGCAAGTTCTC 58.041 36.000 0.00 0.00 0.00 2.87
8144 9354 6.942532 TGAGTCAAAAGTTATGCAAGTTCT 57.057 33.333 0.00 0.00 0.00 3.01
8145 9355 7.377131 GTCTTGAGTCAAAAGTTATGCAAGTTC 59.623 37.037 7.06 0.00 34.64 3.01
8146 9356 7.196331 GTCTTGAGTCAAAAGTTATGCAAGTT 58.804 34.615 7.06 0.00 34.64 2.66
8147 9357 6.238759 GGTCTTGAGTCAAAAGTTATGCAAGT 60.239 38.462 7.06 0.00 34.64 3.16
8190 9412 4.157472 TGAAGTCATCTTTTGTGCACAACA 59.843 37.500 31.17 23.78 35.28 3.33
8212 9434 8.893219 TTAGGTGCTCTATAAGATGACATTTG 57.107 34.615 0.00 0.00 0.00 2.32
8228 9450 4.267349 TGGTCTAGTGTTTTAGGTGCTC 57.733 45.455 0.00 0.00 0.00 4.26
8266 9616 1.821216 CTGCAACCGTCCACCTAAAT 58.179 50.000 0.00 0.00 0.00 1.40
8271 9621 2.594592 AAGCTGCAACCGTCCACC 60.595 61.111 1.02 0.00 0.00 4.61
8272 9622 1.845809 CTCAAGCTGCAACCGTCCAC 61.846 60.000 1.02 0.00 0.00 4.02
8277 9627 0.725686 CAGATCTCAAGCTGCAACCG 59.274 55.000 1.02 0.00 31.11 4.44
8291 9641 3.806521 CGGGAGAAATGACACATCAGATC 59.193 47.826 0.00 0.00 38.57 2.75
8327 9677 7.881775 AACCATTATCTATGTTGGAAAGGTC 57.118 36.000 0.00 0.00 33.36 3.85
8338 9688 5.693104 GGCACATGCAAAACCATTATCTATG 59.307 40.000 6.15 0.00 44.36 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.