Multiple sequence alignment - TraesCS2A01G356500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G356500 chr2A 100.000 3986 0 0 1 3986 601334367 601338352 0.000000e+00 7361.0
1 TraesCS2A01G356500 chr2B 89.880 1828 109 35 2201 3986 538953707 538955500 0.000000e+00 2281.0
2 TraesCS2A01G356500 chr2B 90.448 1497 87 14 732 2204 538952181 538953645 0.000000e+00 1921.0
3 TraesCS2A01G356500 chr2B 93.333 195 11 2 3 197 538951600 538951792 1.810000e-73 287.0
4 TraesCS2A01G356500 chr2D 90.408 1543 77 23 2201 3695 457652693 457654212 0.000000e+00 1964.0
5 TraesCS2A01G356500 chr2D 88.669 1668 97 30 565 2204 457651028 457652631 0.000000e+00 1949.0
6 TraesCS2A01G356500 chr2D 93.401 197 11 2 1 197 457650580 457650774 1.400000e-74 291.0
7 TraesCS2A01G356500 chr2D 85.324 293 25 9 3697 3986 457654390 457654667 1.810000e-73 287.0
8 TraesCS2A01G356500 chr7D 82.833 233 36 4 296 526 470901386 470901156 5.220000e-49 206.0
9 TraesCS2A01G356500 chr7D 96.703 91 1 1 3756 3846 199564315 199564227 2.480000e-32 150.0
10 TraesCS2A01G356500 chr5A 82.403 233 37 4 296 526 566643421 566643191 2.430000e-47 200.0
11 TraesCS2A01G356500 chr7A 82.456 228 35 5 296 520 461924740 461924965 1.130000e-45 195.0
12 TraesCS2A01G356500 chr7A 95.789 95 2 1 3756 3850 209593021 209592929 6.900000e-33 152.0
13 TraesCS2A01G356500 chr6D 82.051 234 36 4 296 526 153853519 153853289 1.130000e-45 195.0
14 TraesCS2A01G356500 chr5B 81.974 233 38 4 296 526 508786192 508786422 1.130000e-45 195.0
15 TraesCS2A01G356500 chr5B 81.116 233 40 4 296 526 508794220 508794450 2.450000e-42 183.0
16 TraesCS2A01G356500 chr4B 81.545 233 39 4 296 526 384287941 384287711 5.260000e-44 189.0
17 TraesCS2A01G356500 chr7B 81.116 233 40 4 296 526 106118017 106117787 2.450000e-42 183.0
18 TraesCS2A01G356500 chr6A 81.197 234 39 5 296 526 108197244 108197475 2.450000e-42 183.0
19 TraesCS2A01G356500 chr3B 95.699 93 2 2 3756 3847 822106195 822106286 8.920000e-32 148.0
20 TraesCS2A01G356500 chr3B 94.737 95 3 2 3754 3847 805612447 805612354 3.210000e-31 147.0
21 TraesCS2A01G356500 chr3B 94.737 95 3 2 3754 3847 805619236 805619143 3.210000e-31 147.0
22 TraesCS2A01G356500 chr3A 94.681 94 5 0 3746 3839 744059761 744059854 3.210000e-31 147.0
23 TraesCS2A01G356500 chr3A 93.617 94 5 1 3746 3839 744400354 744400446 5.370000e-29 139.0
24 TraesCS2A01G356500 chr3A 96.875 32 1 0 188 219 748828408 748828439 2.000000e-03 54.7
25 TraesCS2A01G356500 chr6B 87.500 88 11 0 197 284 77774296 77774209 7.050000e-18 102.0
26 TraesCS2A01G356500 chr3D 85.714 91 9 4 197 284 612886428 612886339 4.240000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G356500 chr2A 601334367 601338352 3985 False 7361.000000 7361 100.000000 1 3986 1 chr2A.!!$F1 3985
1 TraesCS2A01G356500 chr2B 538951600 538955500 3900 False 1496.333333 2281 91.220333 3 3986 3 chr2B.!!$F1 3983
2 TraesCS2A01G356500 chr2D 457650580 457654667 4087 False 1122.750000 1964 89.450500 1 3986 4 chr2D.!!$F1 3985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.038310 GCCAGGGCTTCTTTGGTACT 59.962 55.0 2.30 0.00 38.26 2.73 F
607 650 0.234884 CTTGCGACCTGACGTTTTCC 59.765 55.0 0.00 0.00 35.59 3.13 F
1274 1349 0.111266 GCGCGGTTCTATGCATAACG 60.111 55.0 8.83 4.33 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 1349 0.175531 CAACCGATGGGCCCATTTTC 59.824 55.0 37.69 25.05 36.70 2.29 R
2371 2534 0.240945 AGCTGCATGGCACGTAAAAC 59.759 50.0 1.02 0.00 33.79 2.43 R
3052 3225 0.599558 TACAGCTAACGTTGCTCGGT 59.400 50.0 18.29 16.40 44.69 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 7.201453 CCACATGTTATGTTATCAAACGTCGTA 60.201 37.037 0.00 0.00 42.70 3.43
110 111 0.952984 GAGAAGCACCACTGCAGACC 60.953 60.000 23.35 3.27 46.97 3.85
111 112 1.227943 GAAGCACCACTGCAGACCA 60.228 57.895 23.35 0.00 46.97 4.02
174 175 1.604308 CCACTGCATCCACTTGGCA 60.604 57.895 0.00 0.00 35.96 4.92
197 198 1.140134 AGGCCAGGGCTTCTTTGGTA 61.140 55.000 10.54 0.00 41.60 3.25
199 200 0.038310 GCCAGGGCTTCTTTGGTACT 59.962 55.000 2.30 0.00 38.26 2.73
200 201 1.950954 GCCAGGGCTTCTTTGGTACTC 60.951 57.143 2.30 0.00 38.26 2.59
201 202 1.630878 CCAGGGCTTCTTTGGTACTCT 59.369 52.381 0.00 0.00 0.00 3.24
202 203 2.355209 CCAGGGCTTCTTTGGTACTCTC 60.355 54.545 0.00 0.00 0.00 3.20
203 204 2.569404 CAGGGCTTCTTTGGTACTCTCT 59.431 50.000 0.00 0.00 0.00 3.10
204 205 3.008485 CAGGGCTTCTTTGGTACTCTCTT 59.992 47.826 0.00 0.00 0.00 2.85
205 206 3.653352 AGGGCTTCTTTGGTACTCTCTTT 59.347 43.478 0.00 0.00 0.00 2.52
206 207 3.753797 GGGCTTCTTTGGTACTCTCTTTG 59.246 47.826 0.00 0.00 0.00 2.77
208 209 5.512576 GGGCTTCTTTGGTACTCTCTTTGTA 60.513 44.000 0.00 0.00 0.00 2.41
209 210 5.995897 GGCTTCTTTGGTACTCTCTTTGTAA 59.004 40.000 0.00 0.00 0.00 2.41
211 212 7.308049 GGCTTCTTTGGTACTCTCTTTGTAAAG 60.308 40.741 0.00 0.00 37.36 1.85
213 214 9.326413 CTTCTTTGGTACTCTCTTTGTAAAGAA 57.674 33.333 8.28 0.00 43.84 2.52
214 215 9.675464 TTCTTTGGTACTCTCTTTGTAAAGAAA 57.325 29.630 8.28 0.00 43.84 2.52
215 216 9.847224 TCTTTGGTACTCTCTTTGTAAAGAAAT 57.153 29.630 8.28 0.76 43.84 2.17
243 244 8.614469 AGTAACGTTTAGTTCACTAGAGTAGT 57.386 34.615 5.91 0.00 43.06 2.73
244 245 9.712305 AGTAACGTTTAGTTCACTAGAGTAGTA 57.288 33.333 5.91 0.00 43.06 1.82
247 248 7.811653 ACGTTTAGTTCACTAGAGTAGTAACC 58.188 38.462 0.00 0.00 37.23 2.85
248 249 7.663493 ACGTTTAGTTCACTAGAGTAGTAACCT 59.337 37.037 0.00 0.00 37.23 3.50
249 250 9.155975 CGTTTAGTTCACTAGAGTAGTAACCTA 57.844 37.037 0.00 0.00 37.23 3.08
253 254 8.038492 AGTTCACTAGAGTAGTAACCTAAACG 57.962 38.462 0.00 0.00 37.23 3.60
254 255 6.428385 TCACTAGAGTAGTAACCTAAACGC 57.572 41.667 0.00 0.00 37.23 4.84
255 256 6.176183 TCACTAGAGTAGTAACCTAAACGCT 58.824 40.000 0.00 0.00 37.23 5.07
256 257 6.314896 TCACTAGAGTAGTAACCTAAACGCTC 59.685 42.308 0.00 0.00 37.23 5.03
257 258 6.315891 CACTAGAGTAGTAACCTAAACGCTCT 59.684 42.308 0.00 0.00 37.23 4.09
258 259 6.883756 ACTAGAGTAGTAACCTAAACGCTCTT 59.116 38.462 0.00 0.00 37.23 2.85
259 260 8.043710 ACTAGAGTAGTAACCTAAACGCTCTTA 58.956 37.037 0.00 0.00 37.23 2.10
260 261 7.878547 AGAGTAGTAACCTAAACGCTCTTAT 57.121 36.000 0.00 0.00 33.47 1.73
261 262 8.970859 AGAGTAGTAACCTAAACGCTCTTATA 57.029 34.615 0.00 0.00 33.47 0.98
262 263 9.571816 AGAGTAGTAACCTAAACGCTCTTATAT 57.428 33.333 0.00 0.00 33.47 0.86
267 268 9.747293 AGTAACCTAAACGCTCTTATATTTCTC 57.253 33.333 0.00 0.00 0.00 2.87
268 269 9.747293 GTAACCTAAACGCTCTTATATTTCTCT 57.253 33.333 0.00 0.00 0.00 3.10
270 271 9.747293 AACCTAAACGCTCTTATATTTCTCTAC 57.253 33.333 0.00 0.00 0.00 2.59
271 272 8.074972 ACCTAAACGCTCTTATATTTCTCTACG 58.925 37.037 0.00 0.00 0.00 3.51
272 273 7.537991 CCTAAACGCTCTTATATTTCTCTACGG 59.462 40.741 0.00 0.00 0.00 4.02
273 274 6.630444 AACGCTCTTATATTTCTCTACGGA 57.370 37.500 0.00 0.00 0.00 4.69
274 275 6.630444 ACGCTCTTATATTTCTCTACGGAA 57.370 37.500 0.00 0.00 0.00 4.30
275 276 6.670233 ACGCTCTTATATTTCTCTACGGAAG 58.330 40.000 0.00 0.00 0.00 3.46
276 277 6.087522 CGCTCTTATATTTCTCTACGGAAGG 58.912 44.000 0.00 0.00 0.00 3.46
277 278 6.391537 GCTCTTATATTTCTCTACGGAAGGG 58.608 44.000 0.00 0.00 0.00 3.95
278 279 6.572703 GCTCTTATATTTCTCTACGGAAGGGG 60.573 46.154 0.00 0.00 0.00 4.79
279 280 6.379579 TCTTATATTTCTCTACGGAAGGGGT 58.620 40.000 0.00 0.00 0.00 4.95
280 281 7.529555 TCTTATATTTCTCTACGGAAGGGGTA 58.470 38.462 0.00 0.00 0.00 3.69
281 282 7.449704 TCTTATATTTCTCTACGGAAGGGGTAC 59.550 40.741 0.00 0.00 0.00 3.34
282 283 2.905415 TTCTCTACGGAAGGGGTACA 57.095 50.000 0.00 0.00 0.00 2.90
283 284 2.905415 TCTCTACGGAAGGGGTACAA 57.095 50.000 0.00 0.00 0.00 2.41
284 285 3.173953 TCTCTACGGAAGGGGTACAAA 57.826 47.619 0.00 0.00 0.00 2.83
285 286 3.094572 TCTCTACGGAAGGGGTACAAAG 58.905 50.000 0.00 0.00 0.00 2.77
286 287 2.167900 CTCTACGGAAGGGGTACAAAGG 59.832 54.545 0.00 0.00 0.00 3.11
287 288 2.181975 CTACGGAAGGGGTACAAAGGA 58.818 52.381 0.00 0.00 0.00 3.36
288 289 1.437397 ACGGAAGGGGTACAAAGGAA 58.563 50.000 0.00 0.00 0.00 3.36
289 290 1.990327 ACGGAAGGGGTACAAAGGAAT 59.010 47.619 0.00 0.00 0.00 3.01
290 291 2.377531 ACGGAAGGGGTACAAAGGAATT 59.622 45.455 0.00 0.00 0.00 2.17
291 292 3.014623 CGGAAGGGGTACAAAGGAATTC 58.985 50.000 0.00 0.00 0.00 2.17
292 293 3.362706 GGAAGGGGTACAAAGGAATTCC 58.637 50.000 17.31 17.31 0.00 3.01
293 294 3.245479 GGAAGGGGTACAAAGGAATTCCA 60.245 47.826 26.22 1.99 38.89 3.53
294 295 4.572007 GGAAGGGGTACAAAGGAATTCCAT 60.572 45.833 26.22 12.25 38.89 3.41
306 307 7.675619 ACAAAGGAATTCCATAGGATTTGAACT 59.324 33.333 28.04 12.75 38.89 3.01
316 317 9.447279 TCCATAGGATTTGAACTCTTAGGAATA 57.553 33.333 0.00 0.00 0.00 1.75
321 322 8.997734 AGGATTTGAACTCTTAGGAATATGTCT 58.002 33.333 0.00 0.00 0.00 3.41
329 330 8.311395 ACTCTTAGGAATATGTCTTGTGATGA 57.689 34.615 0.00 0.00 0.00 2.92
333 334 9.149225 CTTAGGAATATGTCTTGTGATGATAGC 57.851 37.037 0.00 0.00 0.00 2.97
354 355 4.022068 AGCTTTGATTCGCAGGATTGAAAA 60.022 37.500 0.00 0.00 0.00 2.29
421 425 7.643528 GAGGAAAATTTTCATCCACTCAAAC 57.356 36.000 27.25 9.84 40.87 2.93
422 426 6.524734 AGGAAAATTTTCATCCACTCAAACC 58.475 36.000 27.53 10.03 38.92 3.27
424 428 6.646653 GGAAAATTTTCATCCACTCAAACCTC 59.353 38.462 27.53 5.37 38.92 3.85
425 429 6.983906 AAATTTTCATCCACTCAAACCTCT 57.016 33.333 0.00 0.00 0.00 3.69
426 430 6.983906 AATTTTCATCCACTCAAACCTCTT 57.016 33.333 0.00 0.00 0.00 2.85
428 432 8.477419 AATTTTCATCCACTCAAACCTCTTTA 57.523 30.769 0.00 0.00 0.00 1.85
429 433 7.889873 TTTTCATCCACTCAAACCTCTTTAA 57.110 32.000 0.00 0.00 0.00 1.52
431 435 6.877611 TCATCCACTCAAACCTCTTTAAAC 57.122 37.500 0.00 0.00 0.00 2.01
432 436 6.361433 TCATCCACTCAAACCTCTTTAAACA 58.639 36.000 0.00 0.00 0.00 2.83
433 437 6.831353 TCATCCACTCAAACCTCTTTAAACAA 59.169 34.615 0.00 0.00 0.00 2.83
436 440 8.073467 TCCACTCAAACCTCTTTAAACAATTT 57.927 30.769 0.00 0.00 0.00 1.82
437 441 8.536175 TCCACTCAAACCTCTTTAAACAATTTT 58.464 29.630 0.00 0.00 0.00 1.82
438 442 9.161629 CCACTCAAACCTCTTTAAACAATTTTT 57.838 29.630 0.00 0.00 0.00 1.94
458 462 3.799137 TTTTGTTTGTCCGACGCTATC 57.201 42.857 0.00 0.00 0.00 2.08
459 463 2.442212 TTGTTTGTCCGACGCTATCA 57.558 45.000 0.00 0.00 0.00 2.15
460 464 1.990799 TGTTTGTCCGACGCTATCAG 58.009 50.000 0.00 0.00 0.00 2.90
461 465 1.542472 TGTTTGTCCGACGCTATCAGA 59.458 47.619 0.00 0.00 0.00 3.27
462 466 1.918609 GTTTGTCCGACGCTATCAGAC 59.081 52.381 0.00 0.00 35.57 3.51
463 467 1.170442 TTGTCCGACGCTATCAGACA 58.830 50.000 0.98 0.98 41.98 3.41
464 468 0.450583 TGTCCGACGCTATCAGACAC 59.549 55.000 0.98 0.00 39.39 3.67
465 469 0.248539 GTCCGACGCTATCAGACACC 60.249 60.000 0.00 0.00 35.17 4.16
466 470 1.065928 CCGACGCTATCAGACACCC 59.934 63.158 0.00 0.00 0.00 4.61
467 471 1.065928 CGACGCTATCAGACACCCC 59.934 63.158 0.00 0.00 0.00 4.95
468 472 1.384989 CGACGCTATCAGACACCCCT 61.385 60.000 0.00 0.00 0.00 4.79
469 473 0.824759 GACGCTATCAGACACCCCTT 59.175 55.000 0.00 0.00 0.00 3.95
470 474 0.824759 ACGCTATCAGACACCCCTTC 59.175 55.000 0.00 0.00 0.00 3.46
471 475 0.824109 CGCTATCAGACACCCCTTCA 59.176 55.000 0.00 0.00 0.00 3.02
472 476 1.207089 CGCTATCAGACACCCCTTCAA 59.793 52.381 0.00 0.00 0.00 2.69
473 477 2.354704 CGCTATCAGACACCCCTTCAAA 60.355 50.000 0.00 0.00 0.00 2.69
474 478 3.682718 CGCTATCAGACACCCCTTCAAAT 60.683 47.826 0.00 0.00 0.00 2.32
475 479 3.879892 GCTATCAGACACCCCTTCAAATC 59.120 47.826 0.00 0.00 0.00 2.17
476 480 2.879103 TCAGACACCCCTTCAAATCC 57.121 50.000 0.00 0.00 0.00 3.01
477 481 2.348472 TCAGACACCCCTTCAAATCCT 58.652 47.619 0.00 0.00 0.00 3.24
478 482 2.040278 TCAGACACCCCTTCAAATCCTG 59.960 50.000 0.00 0.00 0.00 3.86
479 483 2.065799 AGACACCCCTTCAAATCCTGT 58.934 47.619 0.00 0.00 0.00 4.00
480 484 3.009033 CAGACACCCCTTCAAATCCTGTA 59.991 47.826 0.00 0.00 0.00 2.74
481 485 3.264450 AGACACCCCTTCAAATCCTGTAG 59.736 47.826 0.00 0.00 0.00 2.74
482 486 3.256704 ACACCCCTTCAAATCCTGTAGA 58.743 45.455 0.00 0.00 0.00 2.59
483 487 3.264450 ACACCCCTTCAAATCCTGTAGAG 59.736 47.826 0.00 0.00 0.00 2.43
484 488 2.239907 ACCCCTTCAAATCCTGTAGAGC 59.760 50.000 0.00 0.00 0.00 4.09
485 489 2.239654 CCCCTTCAAATCCTGTAGAGCA 59.760 50.000 0.00 0.00 0.00 4.26
486 490 3.274288 CCCTTCAAATCCTGTAGAGCAC 58.726 50.000 0.00 0.00 0.00 4.40
487 491 3.054802 CCCTTCAAATCCTGTAGAGCACT 60.055 47.826 0.00 0.00 0.00 4.40
488 492 4.162320 CCCTTCAAATCCTGTAGAGCACTA 59.838 45.833 0.00 0.00 0.00 2.74
489 493 5.163258 CCCTTCAAATCCTGTAGAGCACTAT 60.163 44.000 0.00 0.00 0.00 2.12
490 494 6.042093 CCCTTCAAATCCTGTAGAGCACTATA 59.958 42.308 0.00 0.00 0.00 1.31
491 495 7.151308 CCTTCAAATCCTGTAGAGCACTATAG 58.849 42.308 7.77 7.77 37.51 1.31
499 503 6.007936 CTGTAGAGCACTATAGGACATGTC 57.992 45.833 17.91 17.91 35.26 3.06
500 504 5.445964 TGTAGAGCACTATAGGACATGTCA 58.554 41.667 26.47 8.28 0.00 3.58
501 505 4.927978 AGAGCACTATAGGACATGTCAC 57.072 45.455 26.47 15.79 0.00 3.67
502 506 4.541705 AGAGCACTATAGGACATGTCACT 58.458 43.478 26.47 21.32 0.00 3.41
503 507 4.582656 AGAGCACTATAGGACATGTCACTC 59.417 45.833 26.47 16.91 0.00 3.51
504 508 4.281657 AGCACTATAGGACATGTCACTCA 58.718 43.478 26.47 9.02 0.00 3.41
505 509 4.898265 AGCACTATAGGACATGTCACTCAT 59.102 41.667 26.47 14.97 37.22 2.90
506 510 5.010516 AGCACTATAGGACATGTCACTCATC 59.989 44.000 26.47 8.67 34.09 2.92
507 511 5.777802 CACTATAGGACATGTCACTCATCC 58.222 45.833 26.47 8.72 34.09 3.51
508 512 5.538053 CACTATAGGACATGTCACTCATCCT 59.462 44.000 26.47 15.54 38.59 3.24
509 513 4.952071 ATAGGACATGTCACTCATCCTG 57.048 45.455 26.47 0.00 36.54 3.86
510 514 1.209019 AGGACATGTCACTCATCCTGC 59.791 52.381 26.47 5.80 35.10 4.85
511 515 1.065926 GGACATGTCACTCATCCTGCA 60.066 52.381 26.47 0.00 34.09 4.41
515 519 4.084287 ACATGTCACTCATCCTGCATTTT 58.916 39.130 0.00 0.00 34.09 1.82
517 521 4.771590 TGTCACTCATCCTGCATTTTTC 57.228 40.909 0.00 0.00 0.00 2.29
527 531 4.934356 TCCTGCATTTTTCCTATTCCTGT 58.066 39.130 0.00 0.00 0.00 4.00
533 537 6.928492 TGCATTTTTCCTATTCCTGTGTTTTC 59.072 34.615 0.00 0.00 0.00 2.29
550 554 7.221828 GTGTTTTCACTGTTTTTGAGAATCC 57.778 36.000 0.00 0.00 46.30 3.01
551 555 7.035612 GTGTTTTCACTGTTTTTGAGAATCCT 58.964 34.615 0.00 0.00 46.30 3.24
552 556 7.009540 GTGTTTTCACTGTTTTTGAGAATCCTG 59.990 37.037 0.00 0.00 46.30 3.86
553 557 4.836125 TCACTGTTTTTGAGAATCCTGC 57.164 40.909 0.00 0.00 0.00 4.85
554 558 3.250762 TCACTGTTTTTGAGAATCCTGCG 59.749 43.478 0.00 0.00 0.00 5.18
555 559 2.030805 ACTGTTTTTGAGAATCCTGCGC 60.031 45.455 0.00 0.00 0.00 6.09
556 560 1.069296 TGTTTTTGAGAATCCTGCGCG 60.069 47.619 0.00 0.00 0.00 6.86
557 561 0.521291 TTTTTGAGAATCCTGCGCGG 59.479 50.000 9.96 9.96 0.00 6.46
558 562 1.922135 TTTTGAGAATCCTGCGCGGC 61.922 55.000 11.81 0.00 0.00 6.53
559 563 4.838152 TGAGAATCCTGCGCGGCC 62.838 66.667 11.81 0.00 0.00 6.13
560 564 4.838152 GAGAATCCTGCGCGGCCA 62.838 66.667 11.81 0.00 0.00 5.36
577 620 2.509336 ACGATGCGGGCGAAAGAG 60.509 61.111 0.00 0.00 0.00 2.85
607 650 0.234884 CTTGCGACCTGACGTTTTCC 59.765 55.000 0.00 0.00 35.59 3.13
611 654 1.070275 GACCTGACGTTTTCCCCGT 59.930 57.895 0.00 0.00 42.06 5.28
622 665 3.303526 CGTTTTCCCCGTACTTGTCAAAG 60.304 47.826 0.00 0.00 39.49 2.77
633 676 2.294074 CTTGTCAAAGTTTCGGGTCCA 58.706 47.619 0.00 0.00 0.00 4.02
635 678 3.773418 TGTCAAAGTTTCGGGTCCATA 57.227 42.857 0.00 0.00 0.00 2.74
652 695 0.821517 ATATCCACGCAGACGGAACA 59.178 50.000 0.00 0.00 46.04 3.18
670 713 4.873129 CGCCGGTGGGACGATCTG 62.873 72.222 7.26 0.00 35.67 2.90
671 714 3.458163 GCCGGTGGGACGATCTGA 61.458 66.667 1.90 0.00 35.47 3.27
672 715 3.014085 GCCGGTGGGACGATCTGAA 62.014 63.158 1.90 0.00 35.47 3.02
673 716 1.141881 CCGGTGGGACGATCTGAAG 59.858 63.158 0.00 0.00 35.47 3.02
674 717 1.519455 CGGTGGGACGATCTGAAGC 60.519 63.158 0.00 0.00 35.47 3.86
675 718 1.153349 GGTGGGACGATCTGAAGCC 60.153 63.158 0.00 0.00 0.00 4.35
676 719 1.519455 GTGGGACGATCTGAAGCCG 60.519 63.158 0.00 0.00 0.00 5.52
677 720 2.107141 GGGACGATCTGAAGCCGG 59.893 66.667 0.00 0.00 0.00 6.13
678 721 2.423898 GGGACGATCTGAAGCCGGA 61.424 63.158 5.05 0.00 0.00 5.14
696 739 1.997928 GAAAGAGGCCGCAATCCAGC 61.998 60.000 9.88 0.00 0.00 4.85
714 757 2.668550 GCACGACGCCCCTTCTTT 60.669 61.111 0.00 0.00 32.94 2.52
715 758 2.677979 GCACGACGCCCCTTCTTTC 61.678 63.158 0.00 0.00 32.94 2.62
716 759 1.301401 CACGACGCCCCTTCTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
717 760 1.301479 ACGACGCCCCTTCTTTCAC 60.301 57.895 0.00 0.00 0.00 3.18
718 761 2.033194 CGACGCCCCTTCTTTCACC 61.033 63.158 0.00 0.00 0.00 4.02
719 762 2.032071 ACGCCCCTTCTTTCACCG 59.968 61.111 0.00 0.00 0.00 4.94
720 763 3.431725 CGCCCCTTCTTTCACCGC 61.432 66.667 0.00 0.00 0.00 5.68
721 764 3.062466 GCCCCTTCTTTCACCGCC 61.062 66.667 0.00 0.00 0.00 6.13
722 765 2.361230 CCCCTTCTTTCACCGCCC 60.361 66.667 0.00 0.00 0.00 6.13
723 766 2.746277 CCCTTCTTTCACCGCCCG 60.746 66.667 0.00 0.00 0.00 6.13
724 767 3.431725 CCTTCTTTCACCGCCCGC 61.432 66.667 0.00 0.00 0.00 6.13
725 768 2.668212 CTTCTTTCACCGCCCGCA 60.668 61.111 0.00 0.00 0.00 5.69
726 769 2.966309 CTTCTTTCACCGCCCGCAC 61.966 63.158 0.00 0.00 0.00 5.34
781 829 2.662596 CCACCCGCAGTTAGCTCA 59.337 61.111 0.00 0.00 42.61 4.26
832 882 4.802051 CCCACCCCACTGCCATCG 62.802 72.222 0.00 0.00 0.00 3.84
951 1008 2.804090 GAGACGCGACGGTGGAAC 60.804 66.667 15.93 0.00 0.00 3.62
1116 1178 0.249073 CGCTCTACTGGCGCTACAAT 60.249 55.000 7.64 0.00 45.83 2.71
1132 1194 1.486726 ACAATAAGGGCTTCTCCTCCG 59.513 52.381 0.00 0.00 35.80 4.63
1274 1349 0.111266 GCGCGGTTCTATGCATAACG 60.111 55.000 8.83 4.33 0.00 3.18
1286 1361 0.820871 GCATAACGAAAATGGGCCCA 59.179 50.000 30.92 30.92 0.00 5.36
1301 1383 0.530870 GCCCATCGGTTGAGACTAGC 60.531 60.000 0.00 0.00 0.00 3.42
1337 1419 1.990799 CGGTTGCTTATGAGTGTCGA 58.009 50.000 0.00 0.00 0.00 4.20
1348 1430 2.429478 TGAGTGTCGACGGACTGAATA 58.571 47.619 12.81 0.00 43.79 1.75
1350 1432 2.156917 AGTGTCGACGGACTGAATACA 58.843 47.619 11.62 0.00 43.79 2.29
1353 1435 2.095415 TGTCGACGGACTGAATACACTG 60.095 50.000 11.62 0.00 43.79 3.66
1366 1448 6.127338 ACTGAATACACTGCTAGCAATAGACA 60.127 38.462 19.86 11.62 0.00 3.41
1374 1456 9.784531 ACACTGCTAGCAATAGACAATTTATAT 57.215 29.630 19.86 0.00 0.00 0.86
1409 1491 7.072177 TGCTTTTAACTGGATCGATAAAGTG 57.928 36.000 11.99 2.75 0.00 3.16
1420 1502 6.183360 TGGATCGATAAAGTGATGTCTGACAT 60.183 38.462 22.45 22.45 42.43 3.06
1451 1534 2.042831 CCTTCCTTTGCAGGGCTCG 61.043 63.158 3.27 0.00 41.25 5.03
1545 1628 8.562892 AGTCTTCTCATTGTAATTTGTTGAGTG 58.437 33.333 0.00 0.00 36.17 3.51
1552 1635 7.914871 TCATTGTAATTTGTTGAGTGTGAACTG 59.085 33.333 0.00 0.00 0.00 3.16
1656 1739 4.947388 ACAGTTCAACCTGCAACTTTAGAA 59.053 37.500 0.00 0.00 35.83 2.10
1660 1743 7.168135 CAGTTCAACCTGCAACTTTAGAATTTC 59.832 37.037 0.00 0.00 30.06 2.17
1705 1789 3.188460 CACAATTTAGACGTCCAGGGTTG 59.812 47.826 13.01 13.24 0.00 3.77
1733 1817 5.011943 ACATGCCTGTCATTTTAATGGTGTT 59.988 36.000 0.00 0.00 37.03 3.32
1749 1833 5.304686 TGGTGTTATTCTTCACAGTTCCT 57.695 39.130 0.00 0.00 36.43 3.36
1918 2002 2.100916 GCGAGTTAAGTATCAGGCTGGA 59.899 50.000 15.73 1.60 0.00 3.86
1919 2003 3.243907 GCGAGTTAAGTATCAGGCTGGAT 60.244 47.826 15.73 9.43 0.00 3.41
1965 2056 7.210873 TGAAAGACTTGACTCTTAAGGACTTC 58.789 38.462 1.85 0.00 31.17 3.01
1998 2089 8.954950 AACCTGTGAGATTTGTCTAATGATAG 57.045 34.615 0.00 0.00 0.00 2.08
2025 2116 9.869667 ACTCTATTGAATGACCTAGTGTATACT 57.130 33.333 4.17 0.00 40.99 2.12
2100 2198 4.678742 GCTCAGAGTTTTGATGCTTTTGTC 59.321 41.667 0.00 0.00 0.00 3.18
2105 2203 7.386573 TCAGAGTTTTGATGCTTTTGTCGTATA 59.613 33.333 0.00 0.00 0.00 1.47
2106 2204 7.689812 CAGAGTTTTGATGCTTTTGTCGTATAG 59.310 37.037 0.00 0.00 0.00 1.31
2134 2232 6.058833 TGTGAACAATACACAAGAAAGGCTA 58.941 36.000 0.00 0.00 43.73 3.93
2145 2243 4.768968 ACAAGAAAGGCTAATGATGCTGTT 59.231 37.500 0.00 0.00 0.00 3.16
2157 2255 9.787532 GCTAATGATGCTGTTGTTCTTAATTTA 57.212 29.630 0.00 0.00 0.00 1.40
2196 2294 2.504367 GCTCACAAGCTTAGGTCCAAA 58.496 47.619 0.00 0.00 45.55 3.28
2206 2369 8.107095 ACAAGCTTAGGTCCAAATATTACTTCA 58.893 33.333 0.00 0.00 0.00 3.02
2282 2445 4.586421 TGCAACCAAACATGGATTACTTCA 59.414 37.500 1.10 0.00 0.00 3.02
2296 2459 6.543465 TGGATTACTTCATGCTATTTCCAGTG 59.457 38.462 0.00 0.00 0.00 3.66
2301 2464 1.406539 CATGCTATTTCCAGTGGCACC 59.593 52.381 15.27 0.00 35.86 5.01
2341 2504 9.357652 CAAACATGGATTACTTCCTGTTATTTG 57.642 33.333 0.00 0.00 45.68 2.32
2371 2534 0.911769 TGATTACTCCCCTGCACTGG 59.088 55.000 0.00 0.00 0.00 4.00
2382 2545 4.935630 GCACTGGTTTTACGTGCC 57.064 55.556 0.00 0.00 46.09 5.01
2383 2546 2.026522 GCACTGGTTTTACGTGCCA 58.973 52.632 0.00 0.28 46.09 4.92
2396 2560 0.240678 CGTGCCATGCAGCTTACAAA 59.759 50.000 0.00 0.00 40.08 2.83
2410 2574 4.517453 AGCTTACAAATGCCGACAAAGTAA 59.483 37.500 0.00 0.00 0.00 2.24
2411 2575 5.183140 AGCTTACAAATGCCGACAAAGTAAT 59.817 36.000 0.00 0.00 0.00 1.89
2412 2576 6.373216 AGCTTACAAATGCCGACAAAGTAATA 59.627 34.615 0.00 0.00 0.00 0.98
2414 2578 5.950758 ACAAATGCCGACAAAGTAATACA 57.049 34.783 0.00 0.00 0.00 2.29
2420 2584 8.460831 AATGCCGACAAAGTAATACATTTTTC 57.539 30.769 0.00 0.00 0.00 2.29
2423 2587 7.041030 TGCCGACAAAGTAATACATTTTTCTCA 60.041 33.333 0.00 0.00 0.00 3.27
2457 2622 5.925509 TCAACCACTTAAGAAACTAGCACT 58.074 37.500 10.09 0.00 0.00 4.40
2469 2634 1.902508 ACTAGCACTACACCTGCACAT 59.097 47.619 0.00 0.00 37.08 3.21
2495 2660 4.508124 GGCTTTCACCTACATAACTCATCG 59.492 45.833 0.00 0.00 0.00 3.84
2501 2668 6.273071 TCACCTACATAACTCATCGTTGATG 58.727 40.000 0.00 0.32 41.00 3.07
2549 2717 8.934023 AGAGAAATTAGTGTAAACCATTTCCA 57.066 30.769 12.00 0.00 35.36 3.53
2550 2718 9.014297 AGAGAAATTAGTGTAAACCATTTCCAG 57.986 33.333 12.00 0.00 35.36 3.86
2583 2751 4.380531 CAAGTTCTTGTGAGCTGGAACTA 58.619 43.478 0.00 0.00 44.81 2.24
2585 2753 4.826556 AGTTCTTGTGAGCTGGAACTATC 58.173 43.478 0.00 0.00 44.09 2.08
2608 2779 7.747155 TCGTAAATTCCTTTTCACATGGTTA 57.253 32.000 0.00 0.00 0.00 2.85
2609 2780 8.343168 TCGTAAATTCCTTTTCACATGGTTAT 57.657 30.769 0.00 0.00 0.00 1.89
2625 2796 7.118825 CACATGGTTATATCTGTTATGAGGCTG 59.881 40.741 0.00 0.00 0.00 4.85
2796 2969 1.960417 TGAATGCCACACTTGTCGAA 58.040 45.000 0.00 0.00 0.00 3.71
2805 2978 3.181501 CCACACTTGTCGAAGCAAAAAGA 60.182 43.478 0.00 0.00 31.68 2.52
2931 3104 2.591715 ACAGCACTGTGGGAACGC 60.592 61.111 10.21 0.00 43.11 4.84
2974 3147 4.554363 ATTCTCGAGCCGCGACCG 62.554 66.667 8.23 8.15 45.59 4.79
3050 3223 2.545106 GACGACATTTTTACCACACCGT 59.455 45.455 0.00 0.00 0.00 4.83
3051 3224 2.545106 ACGACATTTTTACCACACCGTC 59.455 45.455 0.00 0.00 0.00 4.79
3052 3225 2.544686 CGACATTTTTACCACACCGTCA 59.455 45.455 0.00 0.00 0.00 4.35
3053 3226 3.605231 CGACATTTTTACCACACCGTCAC 60.605 47.826 0.00 0.00 0.00 3.67
3054 3227 2.619646 ACATTTTTACCACACCGTCACC 59.380 45.455 0.00 0.00 0.00 4.02
3055 3228 1.297664 TTTTTACCACACCGTCACCG 58.702 50.000 0.00 0.00 0.00 4.94
3061 3234 2.279918 ACACCGTCACCGAGCAAC 60.280 61.111 0.00 0.00 35.63 4.17
3072 3245 1.000060 ACCGAGCAACGTTAGCTGTAA 60.000 47.619 23.61 0.00 43.58 2.41
3073 3246 2.268298 CCGAGCAACGTTAGCTGTAAT 58.732 47.619 23.61 5.78 43.58 1.89
3307 3491 4.994217 TGCAGTTTGATTCACAGTATCGAA 59.006 37.500 0.00 0.00 0.00 3.71
3361 3552 6.205464 TGGAGACAGATCTTGCTTTACTTTTG 59.795 38.462 0.00 0.00 34.34 2.44
3374 3565 9.877178 TTGCTTTACTTTTGGTCTTTATTTTCA 57.123 25.926 0.00 0.00 0.00 2.69
3379 3570 9.757227 TTACTTTTGGTCTTTATTTTCATGGTG 57.243 29.630 0.00 0.00 0.00 4.17
3380 3571 7.791029 ACTTTTGGTCTTTATTTTCATGGTGT 58.209 30.769 0.00 0.00 0.00 4.16
3381 3572 8.264347 ACTTTTGGTCTTTATTTTCATGGTGTT 58.736 29.630 0.00 0.00 0.00 3.32
3382 3573 8.655651 TTTTGGTCTTTATTTTCATGGTGTTC 57.344 30.769 0.00 0.00 0.00 3.18
3383 3574 6.968263 TGGTCTTTATTTTCATGGTGTTCA 57.032 33.333 0.00 0.00 0.00 3.18
3384 3575 6.980593 TGGTCTTTATTTTCATGGTGTTCAG 58.019 36.000 0.00 0.00 0.00 3.02
3485 3688 5.714806 TGGAGACACCTTCAGTTTTTCTTTT 59.285 36.000 0.00 0.00 39.86 2.27
3486 3689 6.210584 TGGAGACACCTTCAGTTTTTCTTTTT 59.789 34.615 0.00 0.00 39.86 1.94
3555 3781 5.234466 TGGGAAATACCATTTGTTTTGGG 57.766 39.130 0.00 0.00 41.20 4.12
3574 3800 4.148838 TGGGTTGTGTTTATTCCAAGAGG 58.851 43.478 0.00 0.00 0.00 3.69
3584 3810 1.075601 TTCCAAGAGGAGCCCAACAT 58.924 50.000 0.00 0.00 46.74 2.71
3595 3821 1.229975 GCCCAACATTTTGCACCAGC 61.230 55.000 0.00 0.00 42.57 4.85
3642 3868 2.262572 GCACCAGGCGAAAAGTAATG 57.737 50.000 0.00 0.00 0.00 1.90
3695 3921 8.537728 TTTATTTTACCAGCAGATTCATGGAT 57.462 30.769 8.94 0.00 37.54 3.41
3698 4101 6.499106 TTTACCAGCAGATTCATGGATAGA 57.501 37.500 8.94 0.00 37.54 1.98
3710 4113 2.570415 TGGATAGACCCGTGCAAAAA 57.430 45.000 0.00 0.00 38.00 1.94
3727 4130 7.513505 CGTGCAAAAAGAGTAAATGTCAGTTTG 60.514 37.037 0.00 0.00 0.00 2.93
3728 4131 6.756074 TGCAAAAAGAGTAAATGTCAGTTTGG 59.244 34.615 0.00 0.00 0.00 3.28
3850 4253 9.624373 CTGAGCTAATAGGCCAATTTGATATAT 57.376 33.333 5.01 0.00 0.00 0.86
3881 4284 9.128404 TGGTTATAGTACATCACTACCTGTAAG 57.872 37.037 0.00 0.00 42.56 2.34
3886 4289 7.098074 AGTACATCACTACCTGTAAGTTAGC 57.902 40.000 0.00 0.00 34.98 3.09
3899 4302 5.305585 TGTAAGTTAGCAGAACCAAGGAAG 58.694 41.667 0.00 0.00 0.00 3.46
3901 4304 4.917906 AGTTAGCAGAACCAAGGAAGAT 57.082 40.909 0.00 0.00 0.00 2.40
3903 4306 6.567602 AGTTAGCAGAACCAAGGAAGATAT 57.432 37.500 0.00 0.00 0.00 1.63
3959 4362 4.082679 GCGTTACTCCCTACATGATCCTAG 60.083 50.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.303236 CCCAGTTTGGCCGATCACA 60.303 57.895 0.00 0.00 35.79 3.58
46 47 2.232941 ACCAGACCAATCATTACGACGT 59.767 45.455 5.52 5.52 0.00 4.34
110 111 2.917701 TGCACGACAGGCATTATTTG 57.082 45.000 0.00 0.00 36.11 2.32
174 175 1.438686 AAAGAAGCCCTGGCCTCCTT 61.439 55.000 3.32 0.48 43.17 3.36
218 219 8.614469 ACTACTCTAGTGAACTAAACGTTACT 57.386 34.615 0.00 2.47 37.69 2.24
221 222 8.293157 GGTTACTACTCTAGTGAACTAAACGTT 58.707 37.037 0.00 0.00 39.81 3.99
223 224 8.038492 AGGTTACTACTCTAGTGAACTAAACG 57.962 38.462 0.00 0.00 40.13 3.60
227 228 9.155975 CGTTTAGGTTACTACTCTAGTGAACTA 57.844 37.037 0.00 0.00 40.13 2.24
228 229 7.361628 GCGTTTAGGTTACTACTCTAGTGAACT 60.362 40.741 0.00 0.00 43.67 3.01
229 230 6.744993 GCGTTTAGGTTACTACTCTAGTGAAC 59.255 42.308 0.00 0.00 39.81 3.18
230 231 6.656693 AGCGTTTAGGTTACTACTCTAGTGAA 59.343 38.462 0.00 0.00 39.81 3.18
231 232 6.176183 AGCGTTTAGGTTACTACTCTAGTGA 58.824 40.000 0.00 0.00 39.81 3.41
232 233 6.315891 AGAGCGTTTAGGTTACTACTCTAGTG 59.684 42.308 0.00 0.00 39.81 2.74
233 234 6.413892 AGAGCGTTTAGGTTACTACTCTAGT 58.586 40.000 0.00 0.00 42.68 2.57
234 235 6.923928 AGAGCGTTTAGGTTACTACTCTAG 57.076 41.667 0.00 0.00 31.10 2.43
235 236 8.970859 ATAAGAGCGTTTAGGTTACTACTCTA 57.029 34.615 0.00 0.00 31.44 2.43
236 237 7.878547 ATAAGAGCGTTTAGGTTACTACTCT 57.121 36.000 0.00 0.00 33.04 3.24
241 242 9.747293 GAGAAATATAAGAGCGTTTAGGTTACT 57.253 33.333 0.00 0.00 0.00 2.24
242 243 9.747293 AGAGAAATATAAGAGCGTTTAGGTTAC 57.253 33.333 0.00 0.00 0.00 2.50
244 245 9.747293 GTAGAGAAATATAAGAGCGTTTAGGTT 57.253 33.333 0.00 0.00 0.00 3.50
245 246 8.074972 CGTAGAGAAATATAAGAGCGTTTAGGT 58.925 37.037 0.00 0.00 0.00 3.08
246 247 7.537991 CCGTAGAGAAATATAAGAGCGTTTAGG 59.462 40.741 0.00 0.00 0.00 2.69
247 248 8.288208 TCCGTAGAGAAATATAAGAGCGTTTAG 58.712 37.037 0.00 0.00 0.00 1.85
248 249 8.158169 TCCGTAGAGAAATATAAGAGCGTTTA 57.842 34.615 0.00 0.00 0.00 2.01
249 250 7.035840 TCCGTAGAGAAATATAAGAGCGTTT 57.964 36.000 0.00 0.00 0.00 3.60
250 251 6.630444 TCCGTAGAGAAATATAAGAGCGTT 57.370 37.500 0.00 0.00 0.00 4.84
251 252 6.294065 CCTTCCGTAGAGAAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
252 253 6.087522 CCTTCCGTAGAGAAATATAAGAGCG 58.912 44.000 0.00 0.00 0.00 5.03
253 254 6.391537 CCCTTCCGTAGAGAAATATAAGAGC 58.608 44.000 0.00 0.00 0.00 4.09
254 255 6.494146 ACCCCTTCCGTAGAGAAATATAAGAG 59.506 42.308 0.00 0.00 0.00 2.85
255 256 6.379579 ACCCCTTCCGTAGAGAAATATAAGA 58.620 40.000 0.00 0.00 0.00 2.10
256 257 6.667558 ACCCCTTCCGTAGAGAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
257 258 7.068702 TGTACCCCTTCCGTAGAGAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
258 259 6.613699 TGTACCCCTTCCGTAGAGAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
259 260 5.461327 TGTACCCCTTCCGTAGAGAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
260 261 4.870636 TGTACCCCTTCCGTAGAGAAATA 58.129 43.478 0.00 0.00 0.00 1.40
261 262 3.716431 TGTACCCCTTCCGTAGAGAAAT 58.284 45.455 0.00 0.00 0.00 2.17
262 263 3.173953 TGTACCCCTTCCGTAGAGAAA 57.826 47.619 0.00 0.00 0.00 2.52
263 264 2.905415 TGTACCCCTTCCGTAGAGAA 57.095 50.000 0.00 0.00 0.00 2.87
264 265 2.905415 TTGTACCCCTTCCGTAGAGA 57.095 50.000 0.00 0.00 0.00 3.10
265 266 2.167900 CCTTTGTACCCCTTCCGTAGAG 59.832 54.545 0.00 0.00 0.00 2.43
266 267 2.181975 CCTTTGTACCCCTTCCGTAGA 58.818 52.381 0.00 0.00 0.00 2.59
267 268 2.181975 TCCTTTGTACCCCTTCCGTAG 58.818 52.381 0.00 0.00 0.00 3.51
268 269 2.323999 TCCTTTGTACCCCTTCCGTA 57.676 50.000 0.00 0.00 0.00 4.02
269 270 1.437397 TTCCTTTGTACCCCTTCCGT 58.563 50.000 0.00 0.00 0.00 4.69
270 271 2.801077 ATTCCTTTGTACCCCTTCCG 57.199 50.000 0.00 0.00 0.00 4.30
271 272 3.245479 TGGAATTCCTTTGTACCCCTTCC 60.245 47.826 24.73 0.00 36.82 3.46
272 273 4.042271 TGGAATTCCTTTGTACCCCTTC 57.958 45.455 24.73 0.00 36.82 3.46
273 274 4.692523 ATGGAATTCCTTTGTACCCCTT 57.307 40.909 24.73 0.00 36.82 3.95
274 275 4.168088 CCTATGGAATTCCTTTGTACCCCT 59.832 45.833 24.73 0.73 36.82 4.79
275 276 4.167307 TCCTATGGAATTCCTTTGTACCCC 59.833 45.833 24.73 0.00 36.82 4.95
276 277 5.382664 TCCTATGGAATTCCTTTGTACCC 57.617 43.478 24.73 0.00 36.82 3.69
277 278 7.559897 TCAAATCCTATGGAATTCCTTTGTACC 59.440 37.037 24.73 0.00 34.34 3.34
278 279 8.519799 TCAAATCCTATGGAATTCCTTTGTAC 57.480 34.615 24.73 0.00 34.34 2.90
279 280 8.966868 GTTCAAATCCTATGGAATTCCTTTGTA 58.033 33.333 24.73 15.47 34.34 2.41
280 281 7.675619 AGTTCAAATCCTATGGAATTCCTTTGT 59.324 33.333 24.73 10.95 34.34 2.83
281 282 8.071177 AGTTCAAATCCTATGGAATTCCTTTG 57.929 34.615 24.73 22.29 34.34 2.77
282 283 8.118600 AGAGTTCAAATCCTATGGAATTCCTTT 58.881 33.333 24.73 12.83 34.34 3.11
283 284 7.646884 AGAGTTCAAATCCTATGGAATTCCTT 58.353 34.615 24.73 20.40 34.34 3.36
284 285 7.218314 AGAGTTCAAATCCTATGGAATTCCT 57.782 36.000 24.73 12.90 34.34 3.36
285 286 7.888250 AAGAGTTCAAATCCTATGGAATTCC 57.112 36.000 18.17 18.17 34.34 3.01
286 287 9.061435 CCTAAGAGTTCAAATCCTATGGAATTC 57.939 37.037 0.00 0.00 34.34 2.17
287 288 8.781951 TCCTAAGAGTTCAAATCCTATGGAATT 58.218 33.333 0.00 0.00 34.34 2.17
288 289 8.337118 TCCTAAGAGTTCAAATCCTATGGAAT 57.663 34.615 0.00 0.00 34.34 3.01
289 290 7.749377 TCCTAAGAGTTCAAATCCTATGGAA 57.251 36.000 0.00 0.00 34.34 3.53
290 291 7.749377 TTCCTAAGAGTTCAAATCCTATGGA 57.251 36.000 0.00 0.00 35.55 3.41
316 317 7.254692 CGAATCAAAGCTATCATCACAAGACAT 60.255 37.037 0.00 0.00 0.00 3.06
321 322 4.635324 TGCGAATCAAAGCTATCATCACAA 59.365 37.500 0.00 0.00 0.00 3.33
329 330 4.454678 TCAATCCTGCGAATCAAAGCTAT 58.545 39.130 0.00 0.00 0.00 2.97
333 334 4.622740 GGTTTTCAATCCTGCGAATCAAAG 59.377 41.667 0.00 0.00 0.00 2.77
408 412 6.361433 TGTTTAAAGAGGTTTGAGTGGATGA 58.639 36.000 0.00 0.00 0.00 2.92
409 413 6.633500 TGTTTAAAGAGGTTTGAGTGGATG 57.367 37.500 0.00 0.00 0.00 3.51
410 414 7.839680 ATTGTTTAAAGAGGTTTGAGTGGAT 57.160 32.000 0.00 0.00 0.00 3.41
411 415 7.654022 AATTGTTTAAAGAGGTTTGAGTGGA 57.346 32.000 0.00 0.00 0.00 4.02
437 441 3.560481 TGATAGCGTCGGACAAACAAAAA 59.440 39.130 9.10 0.00 0.00 1.94
438 442 3.132160 TGATAGCGTCGGACAAACAAAA 58.868 40.909 9.10 0.00 0.00 2.44
439 443 2.734606 CTGATAGCGTCGGACAAACAAA 59.265 45.455 9.10 0.00 35.02 2.83
440 444 2.029739 TCTGATAGCGTCGGACAAACAA 60.030 45.455 9.10 0.00 37.31 2.83
441 445 1.542472 TCTGATAGCGTCGGACAAACA 59.458 47.619 9.10 0.50 37.31 2.83
442 446 2.273370 TCTGATAGCGTCGGACAAAC 57.727 50.000 9.10 0.00 37.31 2.93
447 451 1.381928 GGGTGTCTGATAGCGTCGGA 61.382 60.000 0.00 0.20 39.94 4.55
448 452 1.065928 GGGTGTCTGATAGCGTCGG 59.934 63.158 0.00 0.00 34.31 4.79
449 453 1.065928 GGGGTGTCTGATAGCGTCG 59.934 63.158 0.00 0.00 0.00 5.12
450 454 0.824759 AAGGGGTGTCTGATAGCGTC 59.175 55.000 0.00 0.00 0.00 5.19
451 455 0.824759 GAAGGGGTGTCTGATAGCGT 59.175 55.000 0.00 0.00 0.00 5.07
452 456 0.824109 TGAAGGGGTGTCTGATAGCG 59.176 55.000 0.00 0.00 0.00 4.26
453 457 3.350219 TTTGAAGGGGTGTCTGATAGC 57.650 47.619 0.00 0.00 0.00 2.97
454 458 4.164988 AGGATTTGAAGGGGTGTCTGATAG 59.835 45.833 0.00 0.00 0.00 2.08
455 459 4.080356 CAGGATTTGAAGGGGTGTCTGATA 60.080 45.833 0.00 0.00 0.00 2.15
456 460 2.922283 AGGATTTGAAGGGGTGTCTGAT 59.078 45.455 0.00 0.00 0.00 2.90
457 461 2.040278 CAGGATTTGAAGGGGTGTCTGA 59.960 50.000 0.00 0.00 0.00 3.27
458 462 2.224867 ACAGGATTTGAAGGGGTGTCTG 60.225 50.000 0.00 0.00 0.00 3.51
459 463 2.065799 ACAGGATTTGAAGGGGTGTCT 58.934 47.619 0.00 0.00 0.00 3.41
460 464 2.586648 ACAGGATTTGAAGGGGTGTC 57.413 50.000 0.00 0.00 0.00 3.67
461 465 3.256704 TCTACAGGATTTGAAGGGGTGT 58.743 45.455 0.00 0.00 0.00 4.16
462 466 3.878778 CTCTACAGGATTTGAAGGGGTG 58.121 50.000 0.00 0.00 0.00 4.61
463 467 2.239907 GCTCTACAGGATTTGAAGGGGT 59.760 50.000 0.00 0.00 0.00 4.95
464 468 2.239654 TGCTCTACAGGATTTGAAGGGG 59.760 50.000 0.00 0.00 0.00 4.79
465 469 3.054802 AGTGCTCTACAGGATTTGAAGGG 60.055 47.826 0.00 0.00 0.00 3.95
466 470 4.213564 AGTGCTCTACAGGATTTGAAGG 57.786 45.455 0.00 0.00 0.00 3.46
467 471 7.014711 TCCTATAGTGCTCTACAGGATTTGAAG 59.985 40.741 16.96 0.00 42.76 3.02
468 472 6.839134 TCCTATAGTGCTCTACAGGATTTGAA 59.161 38.462 16.96 0.00 42.76 2.69
469 473 6.373759 TCCTATAGTGCTCTACAGGATTTGA 58.626 40.000 16.96 0.00 42.76 2.69
470 474 6.656632 TCCTATAGTGCTCTACAGGATTTG 57.343 41.667 16.96 0.00 42.76 2.32
474 478 4.790718 TGTCCTATAGTGCTCTACAGGA 57.209 45.455 16.96 16.96 44.64 3.86
475 479 4.830046 ACATGTCCTATAGTGCTCTACAGG 59.170 45.833 12.98 12.98 40.98 4.00
476 480 5.532779 TGACATGTCCTATAGTGCTCTACAG 59.467 44.000 22.85 0.00 0.00 2.74
477 481 5.299531 GTGACATGTCCTATAGTGCTCTACA 59.700 44.000 22.85 0.00 0.00 2.74
478 482 5.533154 AGTGACATGTCCTATAGTGCTCTAC 59.467 44.000 22.85 9.37 0.00 2.59
479 483 5.696030 AGTGACATGTCCTATAGTGCTCTA 58.304 41.667 22.85 0.00 0.00 2.43
480 484 4.541705 AGTGACATGTCCTATAGTGCTCT 58.458 43.478 22.85 0.00 0.00 4.09
481 485 4.339530 TGAGTGACATGTCCTATAGTGCTC 59.660 45.833 22.85 15.24 0.00 4.26
482 486 4.281657 TGAGTGACATGTCCTATAGTGCT 58.718 43.478 22.85 7.91 0.00 4.40
483 487 4.655762 TGAGTGACATGTCCTATAGTGC 57.344 45.455 22.85 7.28 0.00 4.40
484 488 5.538053 AGGATGAGTGACATGTCCTATAGTG 59.462 44.000 22.85 0.00 36.56 2.74
485 489 5.538053 CAGGATGAGTGACATGTCCTATAGT 59.462 44.000 22.85 7.16 39.69 2.12
486 490 5.566429 GCAGGATGAGTGACATGTCCTATAG 60.566 48.000 22.85 5.54 39.69 1.31
487 491 4.281941 GCAGGATGAGTGACATGTCCTATA 59.718 45.833 22.85 11.78 39.69 1.31
488 492 3.070734 GCAGGATGAGTGACATGTCCTAT 59.929 47.826 22.85 11.40 39.69 2.57
489 493 2.432146 GCAGGATGAGTGACATGTCCTA 59.568 50.000 22.85 2.27 39.69 2.94
490 494 1.209019 GCAGGATGAGTGACATGTCCT 59.791 52.381 22.85 18.18 39.69 3.85
491 495 1.065926 TGCAGGATGAGTGACATGTCC 60.066 52.381 22.85 13.88 39.69 4.02
492 496 2.391616 TGCAGGATGAGTGACATGTC 57.608 50.000 19.27 19.27 39.69 3.06
493 497 3.361281 AATGCAGGATGAGTGACATGT 57.639 42.857 0.00 0.00 39.69 3.21
494 498 4.713824 AAAATGCAGGATGAGTGACATG 57.286 40.909 0.00 0.00 39.69 3.21
495 499 4.159135 GGAAAAATGCAGGATGAGTGACAT 59.841 41.667 0.00 0.00 39.69 3.06
496 500 3.507233 GGAAAAATGCAGGATGAGTGACA 59.493 43.478 0.00 0.00 39.69 3.58
497 501 3.760684 AGGAAAAATGCAGGATGAGTGAC 59.239 43.478 0.00 0.00 39.69 3.67
498 502 4.038271 AGGAAAAATGCAGGATGAGTGA 57.962 40.909 0.00 0.00 39.69 3.41
499 503 6.460676 GGAATAGGAAAAATGCAGGATGAGTG 60.461 42.308 0.00 0.00 39.69 3.51
500 504 5.595952 GGAATAGGAAAAATGCAGGATGAGT 59.404 40.000 0.00 0.00 39.69 3.41
501 505 5.832060 AGGAATAGGAAAAATGCAGGATGAG 59.168 40.000 0.00 0.00 39.69 2.90
502 506 5.595542 CAGGAATAGGAAAAATGCAGGATGA 59.404 40.000 0.00 0.00 39.69 2.92
503 507 5.361857 ACAGGAATAGGAAAAATGCAGGATG 59.638 40.000 0.00 0.00 40.87 3.51
504 508 5.361857 CACAGGAATAGGAAAAATGCAGGAT 59.638 40.000 0.00 0.00 0.00 3.24
505 509 4.706476 CACAGGAATAGGAAAAATGCAGGA 59.294 41.667 0.00 0.00 0.00 3.86
506 510 4.463891 ACACAGGAATAGGAAAAATGCAGG 59.536 41.667 0.00 0.00 0.00 4.85
507 511 5.649782 ACACAGGAATAGGAAAAATGCAG 57.350 39.130 0.00 0.00 0.00 4.41
508 512 6.418057 AAACACAGGAATAGGAAAAATGCA 57.582 33.333 0.00 0.00 0.00 3.96
509 513 6.928492 TGAAAACACAGGAATAGGAAAAATGC 59.072 34.615 0.00 0.00 0.00 3.56
510 514 8.143835 AGTGAAAACACAGGAATAGGAAAAATG 58.856 33.333 0.00 0.00 0.00 2.32
511 515 8.143835 CAGTGAAAACACAGGAATAGGAAAAAT 58.856 33.333 0.00 0.00 0.00 1.82
515 519 5.690865 ACAGTGAAAACACAGGAATAGGAA 58.309 37.500 0.00 0.00 0.00 3.36
517 521 6.391227 AAACAGTGAAAACACAGGAATAGG 57.609 37.500 0.00 0.00 0.00 2.57
527 531 7.035004 CAGGATTCTCAAAAACAGTGAAAACA 58.965 34.615 0.00 0.00 0.00 2.83
533 537 3.558505 CGCAGGATTCTCAAAAACAGTG 58.441 45.455 0.00 0.00 0.00 3.66
535 539 2.589014 GCGCAGGATTCTCAAAAACAG 58.411 47.619 0.30 0.00 0.00 3.16
536 540 1.069296 CGCGCAGGATTCTCAAAAACA 60.069 47.619 8.75 0.00 0.00 2.83
537 541 1.606606 CGCGCAGGATTCTCAAAAAC 58.393 50.000 8.75 0.00 0.00 2.43
539 543 1.922135 GCCGCGCAGGATTCTCAAAA 61.922 55.000 20.06 0.00 45.00 2.44
540 544 2.398554 GCCGCGCAGGATTCTCAAA 61.399 57.895 20.06 0.00 45.00 2.69
542 546 4.838152 GGCCGCGCAGGATTCTCA 62.838 66.667 20.06 0.00 45.00 3.27
543 547 4.838152 TGGCCGCGCAGGATTCTC 62.838 66.667 20.06 3.91 45.00 2.87
558 562 3.864686 CTTTCGCCCGCATCGTGG 61.865 66.667 0.00 0.00 0.00 4.94
559 563 2.802667 CTCTTTCGCCCGCATCGTG 61.803 63.158 0.00 0.00 0.00 4.35
560 564 2.509336 CTCTTTCGCCCGCATCGT 60.509 61.111 0.00 0.00 0.00 3.73
561 565 2.202743 TCTCTTTCGCCCGCATCG 60.203 61.111 0.00 0.00 0.00 3.84
562 566 2.517450 CGTCTCTTTCGCCCGCATC 61.517 63.158 0.00 0.00 0.00 3.91
563 567 2.501223 TTCGTCTCTTTCGCCCGCAT 62.501 55.000 0.00 0.00 0.00 4.73
577 620 2.738521 TCGCAAGCCAGCTTCGTC 60.739 61.111 17.47 5.42 33.42 4.20
607 650 3.515071 CGAAACTTTGACAAGTACGGG 57.485 47.619 0.00 0.00 42.89 5.28
611 654 3.118334 TGGACCCGAAACTTTGACAAGTA 60.118 43.478 0.00 0.00 42.89 2.24
622 665 1.578583 CGTGGATATGGACCCGAAAC 58.421 55.000 0.00 0.00 0.00 2.78
633 676 0.821517 TGTTCCGTCTGCGTGGATAT 59.178 50.000 0.00 0.00 33.42 1.63
635 678 1.374252 GTGTTCCGTCTGCGTGGAT 60.374 57.895 0.00 0.00 33.42 3.41
661 704 0.108329 TTTCCGGCTTCAGATCGTCC 60.108 55.000 0.00 0.00 0.00 4.79
662 705 1.135083 TCTTTCCGGCTTCAGATCGTC 60.135 52.381 0.00 0.00 0.00 4.20
663 706 0.895530 TCTTTCCGGCTTCAGATCGT 59.104 50.000 0.00 0.00 0.00 3.73
665 708 1.946745 CCTCTTTCCGGCTTCAGATC 58.053 55.000 0.00 0.00 0.00 2.75
666 709 0.107459 GCCTCTTTCCGGCTTCAGAT 60.107 55.000 0.00 0.00 44.17 2.90
667 710 1.296715 GCCTCTTTCCGGCTTCAGA 59.703 57.895 0.00 0.00 44.17 3.27
668 711 1.746991 GGCCTCTTTCCGGCTTCAG 60.747 63.158 0.00 0.00 46.73 3.02
669 712 2.351276 GGCCTCTTTCCGGCTTCA 59.649 61.111 0.00 0.00 46.73 3.02
670 713 2.820037 CGGCCTCTTTCCGGCTTC 60.820 66.667 0.00 0.00 46.73 3.86
674 717 2.438434 ATTGCGGCCTCTTTCCGG 60.438 61.111 0.00 0.00 46.51 5.14
676 719 1.378514 TGGATTGCGGCCTCTTTCC 60.379 57.895 0.00 4.31 0.00 3.13
677 720 1.997928 GCTGGATTGCGGCCTCTTTC 61.998 60.000 0.00 0.00 0.00 2.62
678 721 2.048603 GCTGGATTGCGGCCTCTTT 61.049 57.895 0.00 0.00 0.00 2.52
703 746 3.431725 GCGGTGAAAGAAGGGGCG 61.432 66.667 0.00 0.00 0.00 6.13
704 747 3.062466 GGCGGTGAAAGAAGGGGC 61.062 66.667 0.00 0.00 0.00 5.80
705 748 2.361230 GGGCGGTGAAAGAAGGGG 60.361 66.667 0.00 0.00 0.00 4.79
706 749 2.746277 CGGGCGGTGAAAGAAGGG 60.746 66.667 0.00 0.00 0.00 3.95
707 750 3.431725 GCGGGCGGTGAAAGAAGG 61.432 66.667 0.00 0.00 0.00 3.46
708 751 2.668212 TGCGGGCGGTGAAAGAAG 60.668 61.111 0.00 0.00 0.00 2.85
709 752 2.975799 GTGCGGGCGGTGAAAGAA 60.976 61.111 0.00 0.00 0.00 2.52
781 829 0.759346 GGAGTGTGTGAGTGGGAAGT 59.241 55.000 0.00 0.00 0.00 3.01
1044 1106 1.078143 GAGGATCACCAGGCACCAC 60.078 63.158 0.00 0.00 38.94 4.16
1116 1178 2.064581 GGCGGAGGAGAAGCCCTTA 61.065 63.158 0.00 0.00 44.80 2.69
1260 1335 4.976116 GCCCATTTTCGTTATGCATAGAAC 59.024 41.667 6.50 4.41 0.00 3.01
1265 1340 1.412343 GGGCCCATTTTCGTTATGCAT 59.588 47.619 19.95 3.79 0.00 3.96
1267 1342 0.820871 TGGGCCCATTTTCGTTATGC 59.179 50.000 24.45 0.00 0.00 3.14
1274 1349 0.175531 CAACCGATGGGCCCATTTTC 59.824 55.000 37.69 25.05 36.70 2.29
1286 1361 3.442977 AGTTAACGCTAGTCTCAACCGAT 59.557 43.478 0.00 0.00 0.00 4.18
1301 1383 1.134907 ACCGCATCCACCTAGTTAACG 60.135 52.381 0.00 0.00 0.00 3.18
1337 1419 2.159226 GCTAGCAGTGTATTCAGTCCGT 60.159 50.000 10.63 0.00 0.00 4.69
1348 1430 9.784531 ATATAAATTGTCTATTGCTAGCAGTGT 57.215 29.630 21.86 12.79 0.00 3.55
1375 1457 9.203421 CGATCCAGTTAAAAGCATATATGTACA 57.797 33.333 14.14 0.00 0.00 2.90
1376 1458 9.419297 TCGATCCAGTTAAAAGCATATATGTAC 57.581 33.333 14.14 0.00 0.00 2.90
1407 1489 3.004629 TGCAAAACCATGTCAGACATCAC 59.995 43.478 13.53 0.00 36.53 3.06
1409 1491 3.921119 TGCAAAACCATGTCAGACATC 57.079 42.857 13.53 1.35 36.53 3.06
1420 1502 4.450053 CAAAGGAAGGAAATGCAAAACCA 58.550 39.130 0.00 0.00 0.00 3.67
1451 1534 6.795399 TCAAACCTGAAATTGAGAAGTTCAC 58.205 36.000 5.50 0.00 40.16 3.18
1537 1620 5.000591 TCTTGTTTCAGTTCACACTCAACA 58.999 37.500 0.00 0.00 33.83 3.33
1545 1628 7.274686 GCTATACTCTCTCTTGTTTCAGTTCAC 59.725 40.741 0.00 0.00 0.00 3.18
1552 1635 6.857956 TGTCAGCTATACTCTCTCTTGTTTC 58.142 40.000 0.00 0.00 0.00 2.78
1640 1723 5.011023 CCAGGAAATTCTAAAGTTGCAGGTT 59.989 40.000 0.00 0.00 30.92 3.50
1656 1739 5.163045 GGAGGGTGATAAGATTCCAGGAAAT 60.163 44.000 5.81 0.00 0.00 2.17
1660 1743 2.037772 CGGAGGGTGATAAGATTCCAGG 59.962 54.545 0.00 0.00 0.00 4.45
1744 1828 7.781420 TGTTCAAACAATTTGGCAACAGGAAC 61.781 38.462 0.00 8.04 41.98 3.62
1950 2041 5.078411 TCATGCTGAAGTCCTTAAGAGTC 57.922 43.478 3.36 0.00 0.00 3.36
1951 2042 5.489792 TTCATGCTGAAGTCCTTAAGAGT 57.510 39.130 3.36 0.00 31.83 3.24
1952 2043 5.123027 GGTTTCATGCTGAAGTCCTTAAGAG 59.877 44.000 3.36 0.00 37.70 2.85
1953 2044 5.003804 GGTTTCATGCTGAAGTCCTTAAGA 58.996 41.667 3.36 0.00 37.70 2.10
1954 2045 5.006386 AGGTTTCATGCTGAAGTCCTTAAG 58.994 41.667 0.00 0.00 38.43 1.85
1955 2046 4.761739 CAGGTTTCATGCTGAAGTCCTTAA 59.238 41.667 15.03 0.00 39.03 1.85
1956 2047 4.202461 ACAGGTTTCATGCTGAAGTCCTTA 60.202 41.667 15.03 0.00 39.03 2.69
1965 2056 4.022589 ACAAATCTCACAGGTTTCATGCTG 60.023 41.667 0.00 0.00 0.00 4.41
2042 2133 8.573035 ACACACGTTTTTCTCAATATATTTGGT 58.427 29.630 0.00 0.00 0.00 3.67
2055 2147 8.132362 TGAGCAAATATAAACACACGTTTTTCT 58.868 29.630 0.00 0.00 42.82 2.52
2105 2203 8.567948 CCTTTCTTGTGTATTGTTCACATTACT 58.432 33.333 11.41 0.00 43.74 2.24
2106 2204 7.326063 GCCTTTCTTGTGTATTGTTCACATTAC 59.674 37.037 0.00 5.43 43.74 1.89
2119 2217 5.355071 CAGCATCATTAGCCTTTCTTGTGTA 59.645 40.000 0.00 0.00 0.00 2.90
2129 2227 3.960571 AGAACAACAGCATCATTAGCCT 58.039 40.909 0.00 0.00 0.00 4.58
2131 2229 8.693542 AAATTAAGAACAACAGCATCATTAGC 57.306 30.769 0.00 0.00 0.00 3.09
2231 2394 8.458573 AAGTTAATGTGTTATGAGACAAACCA 57.541 30.769 0.00 0.00 32.28 3.67
2240 2403 7.981789 TGGTTGCAAAAAGTTAATGTGTTATGA 59.018 29.630 0.00 0.00 0.00 2.15
2282 2445 1.285962 AGGTGCCACTGGAAATAGCAT 59.714 47.619 0.00 0.00 35.62 3.79
2296 2459 6.049790 TGTTTGGTTTTAATGTTAAGGTGCC 58.950 36.000 0.00 0.00 0.00 5.01
2341 2504 4.952071 GGGAGTAATCACCCCTTACTAC 57.048 50.000 0.00 0.00 39.04 2.73
2371 2534 0.240945 AGCTGCATGGCACGTAAAAC 59.759 50.000 1.02 0.00 33.79 2.43
2382 2545 1.132834 TCGGCATTTGTAAGCTGCATG 59.867 47.619 1.02 0.00 37.64 4.06
2383 2546 1.133025 GTCGGCATTTGTAAGCTGCAT 59.867 47.619 1.02 0.00 37.64 3.96
2396 2560 7.826690 AGAAAAATGTATTACTTTGTCGGCAT 58.173 30.769 0.00 0.00 0.00 4.40
2431 2596 7.819900 AGTGCTAGTTTCTTAAGTGGTTGATAG 59.180 37.037 1.63 0.00 0.00 2.08
2457 2622 3.278574 GAAAGCCATATGTGCAGGTGTA 58.721 45.455 15.63 0.00 0.00 2.90
2469 2634 6.553953 TGAGTTATGTAGGTGAAAGCCATA 57.446 37.500 0.00 0.00 32.25 2.74
2495 2660 7.538575 AGAGCATTTGTAATTGTACCATCAAC 58.461 34.615 0.00 0.00 0.00 3.18
2530 2697 8.466798 GCAATACTGGAAATGGTTTACACTAAT 58.533 33.333 0.00 0.00 28.61 1.73
2531 2698 7.668052 AGCAATACTGGAAATGGTTTACACTAA 59.332 33.333 0.00 0.00 28.61 2.24
2549 2717 2.821969 CAAGAACTTGGGCAGCAATACT 59.178 45.455 6.66 0.00 36.95 2.12
2550 2718 2.558359 ACAAGAACTTGGGCAGCAATAC 59.442 45.455 17.05 0.00 44.45 1.89
2583 2751 6.834168 ACCATGTGAAAAGGAATTTACGAT 57.166 33.333 0.00 0.00 0.00 3.73
2608 2779 6.051717 GTCAACACAGCCTCATAACAGATAT 58.948 40.000 0.00 0.00 0.00 1.63
2609 2780 5.187772 AGTCAACACAGCCTCATAACAGATA 59.812 40.000 0.00 0.00 0.00 1.98
2656 2829 2.366480 TTTGTGCCGCAAGCTGCATT 62.366 50.000 13.99 0.00 45.36 3.56
2796 2969 1.425448 AGGGTAGCCTGTCTTTTTGCT 59.575 47.619 14.01 0.00 37.84 3.91
2945 3118 1.815421 CGAGAATCCTGCCAACCCG 60.815 63.158 0.00 0.00 0.00 5.28
2974 3147 3.941836 GCCAAGCTATCGTGCGGC 61.942 66.667 0.00 0.00 38.13 6.53
3050 3223 0.666274 CAGCTAACGTTGCTCGGTGA 60.666 55.000 18.29 0.00 44.69 4.02
3051 3224 0.944311 ACAGCTAACGTTGCTCGGTG 60.944 55.000 18.29 16.38 44.69 4.94
3052 3225 0.599558 TACAGCTAACGTTGCTCGGT 59.400 50.000 18.29 16.40 44.69 4.69
3053 3226 1.705256 TTACAGCTAACGTTGCTCGG 58.295 50.000 18.29 12.66 44.69 4.63
3054 3227 2.029244 CCATTACAGCTAACGTTGCTCG 59.971 50.000 18.29 15.94 46.00 5.03
3055 3228 3.000727 ACCATTACAGCTAACGTTGCTC 58.999 45.455 18.29 5.46 38.92 4.26
3061 3234 1.924524 CGTGGACCATTACAGCTAACG 59.075 52.381 0.00 0.00 0.00 3.18
3072 3245 2.227865 GCAAACATTACACGTGGACCAT 59.772 45.455 21.57 0.00 0.00 3.55
3073 3246 1.604755 GCAAACATTACACGTGGACCA 59.395 47.619 21.57 0.00 0.00 4.02
3307 3491 5.183904 CCTGCTGGTAAAAATAGCTTGAAGT 59.816 40.000 0.51 0.00 38.25 3.01
3361 3552 5.863935 GCTGAACACCATGAAAATAAAGACC 59.136 40.000 0.00 0.00 0.00 3.85
3373 3564 3.733988 GCATCATCTTGCTGAACACCATG 60.734 47.826 0.00 0.00 39.57 3.66
3374 3565 2.426024 GCATCATCTTGCTGAACACCAT 59.574 45.455 0.00 0.00 39.57 3.55
3375 3566 1.814394 GCATCATCTTGCTGAACACCA 59.186 47.619 0.00 0.00 39.57 4.17
3376 3567 1.814394 TGCATCATCTTGCTGAACACC 59.186 47.619 0.00 0.00 43.18 4.16
3377 3568 2.227149 TGTGCATCATCTTGCTGAACAC 59.773 45.455 0.00 0.00 43.18 3.32
3378 3569 2.506444 TGTGCATCATCTTGCTGAACA 58.494 42.857 0.00 0.00 43.18 3.18
3379 3570 3.692576 GATGTGCATCATCTTGCTGAAC 58.307 45.455 17.00 0.00 46.64 3.18
3493 3696 6.015603 ACAGTACTAACTTAAGGTGTCTCCAC 60.016 42.308 2.38 0.00 35.75 4.02
3494 3697 6.073314 ACAGTACTAACTTAAGGTGTCTCCA 58.927 40.000 2.38 0.00 34.06 3.86
3555 3781 4.082733 GGCTCCTCTTGGAATAAACACAAC 60.083 45.833 0.00 0.00 42.66 3.32
3574 3800 0.392336 TGGTGCAAAATGTTGGGCTC 59.608 50.000 0.00 0.00 35.10 4.70
3595 3821 8.068977 GCTTTTATTCTCTGAGCAGTTCATATG 58.931 37.037 0.00 0.00 34.68 1.78
3636 3862 1.345422 TGGGATGGAGGGAGCATTACT 60.345 52.381 0.00 0.00 0.00 2.24
3642 3868 0.259938 ACATTTGGGATGGAGGGAGC 59.740 55.000 0.00 0.00 0.00 4.70
3686 3912 1.768275 TGCACGGGTCTATCCATGAAT 59.232 47.619 0.00 0.00 38.11 2.57
3695 3921 2.922740 ACTCTTTTTGCACGGGTCTA 57.077 45.000 0.00 0.00 0.00 2.59
3698 4101 3.634910 ACATTTACTCTTTTTGCACGGGT 59.365 39.130 0.00 0.00 0.00 5.28
3850 4253 9.209048 AGGTAGTGATGTACTATAACCATTTCA 57.791 33.333 0.00 0.00 43.44 2.69
3854 4257 9.650714 TTACAGGTAGTGATGTACTATAACCAT 57.349 33.333 0.00 0.00 43.44 3.55
3855 4258 9.128404 CTTACAGGTAGTGATGTACTATAACCA 57.872 37.037 0.00 0.00 43.44 3.67
3856 4259 9.129532 ACTTACAGGTAGTGATGTACTATAACC 57.870 37.037 0.00 0.00 43.44 2.85
3861 4264 7.830697 TGCTAACTTACAGGTAGTGATGTACTA 59.169 37.037 0.00 0.00 37.81 1.82
3863 4266 6.860080 TGCTAACTTACAGGTAGTGATGTAC 58.140 40.000 0.00 0.00 37.81 2.90
3868 4271 5.047519 GGTTCTGCTAACTTACAGGTAGTGA 60.048 44.000 0.00 0.00 37.81 3.41
3869 4272 5.169295 GGTTCTGCTAACTTACAGGTAGTG 58.831 45.833 0.00 0.00 37.81 2.74
3871 4274 5.401531 TGGTTCTGCTAACTTACAGGTAG 57.598 43.478 3.13 0.00 38.53 3.18
3874 4277 4.003648 CCTTGGTTCTGCTAACTTACAGG 58.996 47.826 3.13 0.00 34.57 4.00
3881 4284 9.425577 GTATATATCTTCCTTGGTTCTGCTAAC 57.574 37.037 0.00 0.00 0.00 2.34
3886 4289 8.244802 CGGTAGTATATATCTTCCTTGGTTCTG 58.755 40.741 0.00 0.00 0.00 3.02
3899 4302 4.989279 TTTCGGGGCGGTAGTATATATC 57.011 45.455 0.00 0.00 0.00 1.63
3901 4304 4.343231 TGATTTCGGGGCGGTAGTATATA 58.657 43.478 0.00 0.00 0.00 0.86
3903 4306 2.559668 CTGATTTCGGGGCGGTAGTATA 59.440 50.000 0.00 0.00 0.00 1.47
3938 4341 5.181622 CGTCTAGGATCATGTAGGGAGTAAC 59.818 48.000 0.00 0.00 0.00 2.50
3959 4362 1.335697 GACGAGAACACGGAAGCGTC 61.336 60.000 0.00 0.00 40.75 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.