Multiple sequence alignment - TraesCS2A01G356200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G356200 chr2A 100.000 3475 0 0 1 3475 600531098 600527624 0.000000e+00 6418.0
1 TraesCS2A01G356200 chr2A 90.149 335 29 4 3145 3475 116432287 116432621 1.920000e-117 433.0
2 TraesCS2A01G356200 chr2B 94.869 2553 83 12 192 2723 538013096 538010571 0.000000e+00 3945.0
3 TraesCS2A01G356200 chr2B 89.254 335 32 4 3145 3475 165502940 165503274 1.930000e-112 416.0
4 TraesCS2A01G356200 chr2D 92.783 2785 103 38 8 2723 457256945 457254190 0.000000e+00 3940.0
5 TraesCS2A01G356200 chr2D 89.552 335 31 4 3145 3475 115089442 115089776 4.150000e-114 422.0
6 TraesCS2A01G356200 chr2D 78.146 151 18 8 2571 2716 186077325 186077465 7.990000e-12 82.4
7 TraesCS2A01G356200 chr6D 84.207 1336 191 15 1148 2476 288541795 288540473 0.000000e+00 1280.0
8 TraesCS2A01G356200 chr6D 87.405 262 27 6 2727 2984 454820674 454820415 2.620000e-76 296.0
9 TraesCS2A01G356200 chr6D 86.111 144 18 2 3001 3143 157675310 157675168 1.670000e-33 154.0
10 TraesCS2A01G356200 chr6B 83.383 1336 202 15 1148 2476 448668256 448666934 0.000000e+00 1219.0
11 TraesCS2A01G356200 chr6B 87.692 260 25 4 2727 2984 176545564 176545818 2.620000e-76 296.0
12 TraesCS2A01G356200 chr6B 86.111 144 18 2 3001 3143 64854894 64855036 1.670000e-33 154.0
13 TraesCS2A01G356200 chr6A 83.321 1331 203 15 1148 2473 437021235 437022551 0.000000e+00 1210.0
14 TraesCS2A01G356200 chr6A 92.308 52 3 1 51 102 14205654 14205604 4.810000e-09 73.1
15 TraesCS2A01G356200 chrUn 99.237 393 3 0 1269 1661 479365957 479365565 0.000000e+00 710.0
16 TraesCS2A01G356200 chrUn 85.577 104 13 2 3041 3143 7641809 7641911 1.320000e-19 108.0
17 TraesCS2A01G356200 chrUn 85.577 104 13 2 3041 3143 347282918 347283020 1.320000e-19 108.0
18 TraesCS2A01G356200 chr1D 88.123 261 26 5 2727 2984 222025257 222025515 4.360000e-79 305.0
19 TraesCS2A01G356200 chr7D 87.739 261 28 4 2727 2984 459743132 459742873 5.640000e-78 302.0
20 TraesCS2A01G356200 chr7D 86.538 260 32 3 2727 2984 358198486 358198744 2.040000e-72 283.0
21 TraesCS2A01G356200 chr5B 87.692 260 29 3 2727 2984 27825042 27825300 2.030000e-77 300.0
22 TraesCS2A01G356200 chr5B 80.420 143 22 6 3004 3143 609608531 609608392 1.710000e-18 104.0
23 TraesCS2A01G356200 chr3D 86.538 260 31 4 2727 2984 146723538 146723795 2.040000e-72 283.0
24 TraesCS2A01G356200 chr1A 85.766 274 32 7 2727 2995 250494217 250493946 2.040000e-72 283.0
25 TraesCS2A01G356200 chr1A 75.851 323 65 12 1292 1606 551680384 551680067 6.010000e-33 152.0
26 TraesCS2A01G356200 chr4A 86.038 265 32 5 2727 2988 410364839 410365101 2.640000e-71 279.0
27 TraesCS2A01G356200 chr4B 83.803 142 19 4 3001 3141 29730318 29730180 7.830000e-27 132.0
28 TraesCS2A01G356200 chr7A 82.877 146 18 7 3001 3143 36547412 36547553 1.310000e-24 124.0
29 TraesCS2A01G356200 chr5D 81.633 147 19 8 3001 3143 385450597 385450455 7.880000e-22 115.0
30 TraesCS2A01G356200 chr5D 89.773 88 7 2 3057 3143 8544613 8544699 1.020000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G356200 chr2A 600527624 600531098 3474 True 6418 6418 100.000 1 3475 1 chr2A.!!$R1 3474
1 TraesCS2A01G356200 chr2B 538010571 538013096 2525 True 3945 3945 94.869 192 2723 1 chr2B.!!$R1 2531
2 TraesCS2A01G356200 chr2D 457254190 457256945 2755 True 3940 3940 92.783 8 2723 1 chr2D.!!$R1 2715
3 TraesCS2A01G356200 chr6D 288540473 288541795 1322 True 1280 1280 84.207 1148 2476 1 chr6D.!!$R2 1328
4 TraesCS2A01G356200 chr6B 448666934 448668256 1322 True 1219 1219 83.383 1148 2476 1 chr6B.!!$R1 1328
5 TraesCS2A01G356200 chr6A 437021235 437022551 1316 False 1210 1210 83.321 1148 2473 1 chr6A.!!$F1 1325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 244 0.251608 AAAAGCCCTAACCACCGCAT 60.252 50.0 0.0 0.0 0.0 4.73 F
818 869 0.601311 AGCGGAGACTTGTGACTTGC 60.601 55.0 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1883 0.959372 TCCTCGAGTCCCTGTCGAAC 60.959 60.0 12.31 0.0 45.37 3.95 R
2728 2818 0.034767 GACCTAAAAAGGACCGGGGG 60.035 60.0 6.32 0.0 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.792364 ATCGTAATACTCCCATTAATCCTCA 57.208 36.000 0.00 0.00 0.00 3.86
46 47 8.408601 CCTCATGGAATCTACATTTACAAAAGG 58.591 37.037 0.00 0.00 34.57 3.11
59 60 7.502561 ACATTTACAAAAGGATATGGCTAGGTC 59.497 37.037 0.00 0.00 0.00 3.85
61 62 5.297569 ACAAAAGGATATGGCTAGGTCTC 57.702 43.478 0.00 0.00 0.00 3.36
65 66 3.773560 AGGATATGGCTAGGTCTCAGTC 58.226 50.000 0.00 0.00 0.00 3.51
84 85 6.395629 TCAGTCCGACTAAGATTTAACCAAG 58.604 40.000 0.00 0.00 0.00 3.61
86 87 6.649557 CAGTCCGACTAAGATTTAACCAAGTT 59.350 38.462 0.00 0.00 0.00 2.66
199 223 7.460751 AAGTCGACTTAACAAGACTGTTTAC 57.539 36.000 28.80 0.00 43.45 2.01
209 233 4.709886 ACAAGACTGTTTACAAAAAGCCCT 59.290 37.500 0.00 0.00 28.57 5.19
213 237 5.301045 AGACTGTTTACAAAAAGCCCTAACC 59.699 40.000 0.00 0.00 0.00 2.85
220 244 0.251608 AAAAGCCCTAACCACCGCAT 60.252 50.000 0.00 0.00 0.00 4.73
316 340 3.009584 GGAATAGAGGGGAAATAGGCCAG 59.990 52.174 5.01 0.00 0.00 4.85
388 423 2.238245 GCGATTGCGATGATTGGATC 57.762 50.000 0.00 0.00 40.82 3.36
467 509 0.940519 TCGGTACTCGCCAACGTTTG 60.941 55.000 0.00 0.00 41.18 2.93
650 698 7.795047 TCACATCCTCTTGCTTAGATTATCAA 58.205 34.615 0.00 0.00 30.92 2.57
651 699 8.267183 TCACATCCTCTTGCTTAGATTATCAAA 58.733 33.333 0.00 0.00 30.92 2.69
703 751 9.031360 GTTTCTCCACAGTTTATTTTTCCTTTC 57.969 33.333 0.00 0.00 0.00 2.62
721 772 6.985117 TCCTTTCTGATTGATGAAAAGGTTG 58.015 36.000 10.91 0.00 32.69 3.77
722 773 5.636543 CCTTTCTGATTGATGAAAAGGTTGC 59.363 40.000 4.41 0.00 32.69 4.17
818 869 0.601311 AGCGGAGACTTGTGACTTGC 60.601 55.000 0.00 0.00 0.00 4.01
819 870 0.601311 GCGGAGACTTGTGACTTGCT 60.601 55.000 0.00 0.00 0.00 3.91
820 871 1.871080 CGGAGACTTGTGACTTGCTT 58.129 50.000 0.00 0.00 0.00 3.91
822 873 2.614057 CGGAGACTTGTGACTTGCTTTT 59.386 45.455 0.00 0.00 0.00 2.27
823 874 3.065371 CGGAGACTTGTGACTTGCTTTTT 59.935 43.478 0.00 0.00 0.00 1.94
951 1012 2.693797 AACAACAGCAGCGAATCAAG 57.306 45.000 0.00 0.00 0.00 3.02
954 1015 1.589716 AACAGCAGCGAATCAAGGCC 61.590 55.000 0.00 0.00 0.00 5.19
961 1022 1.226859 CGAATCAAGGCCGCGTAGA 60.227 57.895 4.92 0.00 0.00 2.59
994 1055 3.878667 CTCCCAATCCGCTCCCCC 61.879 72.222 0.00 0.00 0.00 5.40
1031 1092 2.264794 GCGACACGATTCCCCACT 59.735 61.111 0.00 0.00 0.00 4.00
1040 1101 1.683917 CGATTCCCCACTCGATTCTCT 59.316 52.381 0.00 0.00 37.05 3.10
1265 1334 4.021925 GCCTCCTGGAACGTGCCT 62.022 66.667 15.35 0.00 34.57 4.75
1860 1941 2.879462 GCCTCAACGAGTACGGCG 60.879 66.667 4.80 4.80 44.46 6.46
2482 2566 1.439228 CGATCATCTGACCGCCAGT 59.561 57.895 0.00 0.00 43.38 4.00
2489 2573 3.655810 CTGACCGCCAGTCTGCTCC 62.656 68.421 0.00 0.00 46.46 4.70
2547 2636 1.369689 GCACTTGTTGCGCTCACTG 60.370 57.895 9.73 7.21 42.79 3.66
2596 2685 7.106239 ACAGTAGTATTCAGAAGGAATGGTTG 58.894 38.462 0.00 0.00 45.70 3.77
2616 2705 4.758773 TGCACCTAACTGATGATGATGA 57.241 40.909 0.00 0.00 0.00 2.92
2617 2706 5.300411 TGCACCTAACTGATGATGATGAT 57.700 39.130 0.00 0.00 0.00 2.45
2663 2753 5.582665 GCTTTCGATCAATCTTAACTGGAGT 59.417 40.000 0.00 0.00 0.00 3.85
2664 2754 6.456181 GCTTTCGATCAATCTTAACTGGAGTG 60.456 42.308 0.00 0.00 0.00 3.51
2665 2755 5.011090 TCGATCAATCTTAACTGGAGTGG 57.989 43.478 0.00 0.00 30.95 4.00
2723 2813 7.803279 AAAAGAGAAATTTTCGACCAGTACT 57.197 32.000 3.57 0.00 34.02 2.73
2724 2814 7.422878 AAAGAGAAATTTTCGACCAGTACTC 57.577 36.000 0.00 0.00 34.02 2.59
2725 2815 5.480205 AGAGAAATTTTCGACCAGTACTCC 58.520 41.667 0.00 0.00 34.02 3.85
2726 2816 4.576879 AGAAATTTTCGACCAGTACTCCC 58.423 43.478 0.00 0.00 34.02 4.30
2727 2817 4.286291 AGAAATTTTCGACCAGTACTCCCT 59.714 41.667 0.00 0.00 34.02 4.20
2728 2818 3.889520 ATTTTCGACCAGTACTCCCTC 57.110 47.619 0.00 0.00 0.00 4.30
2729 2819 1.553706 TTTCGACCAGTACTCCCTCC 58.446 55.000 0.00 0.00 0.00 4.30
2730 2820 0.324091 TTCGACCAGTACTCCCTCCC 60.324 60.000 0.00 0.00 0.00 4.30
2731 2821 1.757340 CGACCAGTACTCCCTCCCC 60.757 68.421 0.00 0.00 0.00 4.81
2732 2822 1.382833 GACCAGTACTCCCTCCCCC 60.383 68.421 0.00 0.00 0.00 5.40
2733 2823 2.444140 CCAGTACTCCCTCCCCCG 60.444 72.222 0.00 0.00 0.00 5.73
2734 2824 2.444140 CAGTACTCCCTCCCCCGG 60.444 72.222 0.00 0.00 0.00 5.73
2735 2825 2.951211 AGTACTCCCTCCCCCGGT 60.951 66.667 0.00 0.00 0.00 5.28
2736 2826 2.443577 GTACTCCCTCCCCCGGTC 60.444 72.222 0.00 0.00 0.00 4.79
2737 2827 3.759101 TACTCCCTCCCCCGGTCC 61.759 72.222 0.00 0.00 0.00 4.46
2739 2829 4.416601 CTCCCTCCCCCGGTCCTT 62.417 72.222 0.00 0.00 0.00 3.36
2740 2830 3.945064 CTCCCTCCCCCGGTCCTTT 62.945 68.421 0.00 0.00 0.00 3.11
2741 2831 2.939353 CCCTCCCCCGGTCCTTTT 60.939 66.667 0.00 0.00 0.00 2.27
2742 2832 2.544745 CCCTCCCCCGGTCCTTTTT 61.545 63.158 0.00 0.00 0.00 1.94
2743 2833 1.209523 CCCTCCCCCGGTCCTTTTTA 61.210 60.000 0.00 0.00 0.00 1.52
2744 2834 0.255033 CCTCCCCCGGTCCTTTTTAG 59.745 60.000 0.00 0.00 0.00 1.85
2745 2835 0.255033 CTCCCCCGGTCCTTTTTAGG 59.745 60.000 0.00 0.00 0.00 2.69
2746 2836 0.476219 TCCCCCGGTCCTTTTTAGGT 60.476 55.000 0.00 0.00 0.00 3.08
2747 2837 0.034767 CCCCCGGTCCTTTTTAGGTC 60.035 60.000 0.00 0.00 0.00 3.85
2748 2838 0.392060 CCCCGGTCCTTTTTAGGTCG 60.392 60.000 0.00 0.00 0.00 4.79
2749 2839 1.022982 CCCGGTCCTTTTTAGGTCGC 61.023 60.000 0.00 0.00 0.00 5.19
2750 2840 0.320946 CCGGTCCTTTTTAGGTCGCA 60.321 55.000 0.00 0.00 0.00 5.10
2751 2841 1.677820 CCGGTCCTTTTTAGGTCGCAT 60.678 52.381 0.00 0.00 0.00 4.73
2752 2842 2.419021 CCGGTCCTTTTTAGGTCGCATA 60.419 50.000 0.00 0.00 0.00 3.14
2753 2843 3.463944 CGGTCCTTTTTAGGTCGCATAT 58.536 45.455 0.00 0.00 0.00 1.78
2754 2844 4.501915 CCGGTCCTTTTTAGGTCGCATATA 60.502 45.833 0.00 0.00 0.00 0.86
2755 2845 5.051816 CGGTCCTTTTTAGGTCGCATATAA 58.948 41.667 0.00 0.00 0.00 0.98
2756 2846 5.050567 CGGTCCTTTTTAGGTCGCATATAAC 60.051 44.000 0.00 0.00 0.00 1.89
2757 2847 5.818857 GGTCCTTTTTAGGTCGCATATAACA 59.181 40.000 0.00 0.00 0.00 2.41
2758 2848 6.485648 GGTCCTTTTTAGGTCGCATATAACAT 59.514 38.462 0.00 0.00 0.00 2.71
2759 2849 7.012989 GGTCCTTTTTAGGTCGCATATAACATT 59.987 37.037 0.00 0.00 0.00 2.71
2760 2850 8.403236 GTCCTTTTTAGGTCGCATATAACATTT 58.597 33.333 0.00 0.00 0.00 2.32
2761 2851 9.616156 TCCTTTTTAGGTCGCATATAACATTTA 57.384 29.630 0.00 0.00 0.00 1.40
2778 2868 7.721286 AACATTTATCTAAGATCAAGCCTCG 57.279 36.000 0.00 0.00 0.00 4.63
2779 2869 6.821388 ACATTTATCTAAGATCAAGCCTCGT 58.179 36.000 0.00 0.00 0.00 4.18
2780 2870 7.952671 ACATTTATCTAAGATCAAGCCTCGTA 58.047 34.615 0.00 0.00 0.00 3.43
2781 2871 8.421784 ACATTTATCTAAGATCAAGCCTCGTAA 58.578 33.333 0.00 0.00 0.00 3.18
2782 2872 9.261180 CATTTATCTAAGATCAAGCCTCGTAAA 57.739 33.333 0.00 0.00 0.00 2.01
2783 2873 8.873215 TTTATCTAAGATCAAGCCTCGTAAAG 57.127 34.615 0.00 0.00 0.00 1.85
2784 2874 5.916661 TCTAAGATCAAGCCTCGTAAAGT 57.083 39.130 0.00 0.00 0.00 2.66
2785 2875 6.282199 TCTAAGATCAAGCCTCGTAAAGTT 57.718 37.500 0.00 0.00 0.00 2.66
2786 2876 6.698380 TCTAAGATCAAGCCTCGTAAAGTTT 58.302 36.000 0.00 0.00 0.00 2.66
2787 2877 5.613358 AAGATCAAGCCTCGTAAAGTTTG 57.387 39.130 0.00 0.00 0.00 2.93
2788 2878 4.894784 AGATCAAGCCTCGTAAAGTTTGA 58.105 39.130 0.00 0.00 33.69 2.69
2789 2879 5.491982 AGATCAAGCCTCGTAAAGTTTGAT 58.508 37.500 0.00 2.34 38.80 2.57
2790 2880 5.582665 AGATCAAGCCTCGTAAAGTTTGATC 59.417 40.000 16.84 16.84 44.56 2.92
2791 2881 4.637276 TCAAGCCTCGTAAAGTTTGATCA 58.363 39.130 0.00 0.00 0.00 2.92
2792 2882 5.245531 TCAAGCCTCGTAAAGTTTGATCAT 58.754 37.500 0.00 0.00 0.00 2.45
2793 2883 5.705441 TCAAGCCTCGTAAAGTTTGATCATT 59.295 36.000 0.00 0.00 0.00 2.57
2794 2884 6.206634 TCAAGCCTCGTAAAGTTTGATCATTT 59.793 34.615 0.00 0.00 0.00 2.32
2795 2885 6.575162 AGCCTCGTAAAGTTTGATCATTTT 57.425 33.333 0.00 1.09 0.00 1.82
2796 2886 6.981722 AGCCTCGTAAAGTTTGATCATTTTT 58.018 32.000 0.00 0.72 0.00 1.94
2797 2887 8.106247 AGCCTCGTAAAGTTTGATCATTTTTA 57.894 30.769 0.00 0.00 0.00 1.52
2798 2888 8.739972 AGCCTCGTAAAGTTTGATCATTTTTAT 58.260 29.630 0.00 0.00 0.00 1.40
2799 2889 9.997482 GCCTCGTAAAGTTTGATCATTTTTATA 57.003 29.630 0.00 0.00 0.00 0.98
2936 3026 9.739276 AATATGGTCAAACTTTATGAAGTCTGA 57.261 29.630 2.43 2.43 45.18 3.27
2958 3048 8.429493 CTGACTTCAGACAATTCTTATATGCA 57.571 34.615 0.00 0.00 46.59 3.96
2959 3049 8.791327 TGACTTCAGACAATTCTTATATGCAA 57.209 30.769 0.00 0.00 0.00 4.08
2960 3050 9.230122 TGACTTCAGACAATTCTTATATGCAAA 57.770 29.630 0.00 0.00 0.00 3.68
2989 3079 7.653767 AAAAAGACCAAAGAGAGTACATACG 57.346 36.000 0.00 0.00 0.00 3.06
2990 3080 4.985538 AGACCAAAGAGAGTACATACGG 57.014 45.455 0.00 0.00 0.00 4.02
2991 3081 3.700038 AGACCAAAGAGAGTACATACGGG 59.300 47.826 0.00 0.00 0.00 5.28
2992 3082 2.167900 ACCAAAGAGAGTACATACGGGC 59.832 50.000 0.00 0.00 0.00 6.13
2993 3083 2.167693 CCAAAGAGAGTACATACGGGCA 59.832 50.000 0.00 0.00 0.00 5.36
2994 3084 3.181465 CCAAAGAGAGTACATACGGGCAT 60.181 47.826 0.00 0.00 0.00 4.40
2995 3085 4.051922 CAAAGAGAGTACATACGGGCATC 58.948 47.826 0.00 0.00 0.00 3.91
2996 3086 2.945456 AGAGAGTACATACGGGCATCA 58.055 47.619 0.00 0.00 0.00 3.07
2997 3087 2.623889 AGAGAGTACATACGGGCATCAC 59.376 50.000 0.00 0.00 0.00 3.06
2998 3088 2.361119 GAGAGTACATACGGGCATCACA 59.639 50.000 0.00 0.00 0.00 3.58
2999 3089 2.764010 AGAGTACATACGGGCATCACAA 59.236 45.455 0.00 0.00 0.00 3.33
3000 3090 2.864343 GAGTACATACGGGCATCACAAC 59.136 50.000 0.00 0.00 0.00 3.32
3001 3091 2.235155 AGTACATACGGGCATCACAACA 59.765 45.455 0.00 0.00 0.00 3.33
3002 3092 2.418368 ACATACGGGCATCACAACAT 57.582 45.000 0.00 0.00 0.00 2.71
3003 3093 2.288666 ACATACGGGCATCACAACATC 58.711 47.619 0.00 0.00 0.00 3.06
3004 3094 2.092968 ACATACGGGCATCACAACATCT 60.093 45.455 0.00 0.00 0.00 2.90
3005 3095 2.309528 TACGGGCATCACAACATCTC 57.690 50.000 0.00 0.00 0.00 2.75
3006 3096 0.615331 ACGGGCATCACAACATCTCT 59.385 50.000 0.00 0.00 0.00 3.10
3007 3097 1.831106 ACGGGCATCACAACATCTCTA 59.169 47.619 0.00 0.00 0.00 2.43
3008 3098 2.236146 ACGGGCATCACAACATCTCTAA 59.764 45.455 0.00 0.00 0.00 2.10
3009 3099 3.118261 ACGGGCATCACAACATCTCTAAT 60.118 43.478 0.00 0.00 0.00 1.73
3010 3100 4.100963 ACGGGCATCACAACATCTCTAATA 59.899 41.667 0.00 0.00 0.00 0.98
3011 3101 4.687948 CGGGCATCACAACATCTCTAATAG 59.312 45.833 0.00 0.00 0.00 1.73
3012 3102 5.509670 CGGGCATCACAACATCTCTAATAGA 60.510 44.000 0.00 0.00 39.02 1.98
3013 3103 5.698545 GGGCATCACAACATCTCTAATAGAC 59.301 44.000 0.00 0.00 36.93 2.59
3014 3104 5.698545 GGCATCACAACATCTCTAATAGACC 59.301 44.000 0.00 0.00 36.93 3.85
3015 3105 5.698545 GCATCACAACATCTCTAATAGACCC 59.301 44.000 0.00 0.00 36.93 4.46
3016 3106 6.463614 GCATCACAACATCTCTAATAGACCCT 60.464 42.308 0.00 0.00 36.93 4.34
3017 3107 7.504403 CATCACAACATCTCTAATAGACCCTT 58.496 38.462 0.00 0.00 36.93 3.95
3018 3108 7.496346 TCACAACATCTCTAATAGACCCTTT 57.504 36.000 0.00 0.00 36.93 3.11
3019 3109 8.603898 TCACAACATCTCTAATAGACCCTTTA 57.396 34.615 0.00 0.00 36.93 1.85
3020 3110 9.213777 TCACAACATCTCTAATAGACCCTTTAT 57.786 33.333 0.00 0.00 36.93 1.40
3026 3116 9.627395 CATCTCTAATAGACCCTTTATAACACG 57.373 37.037 0.00 0.00 36.93 4.49
3027 3117 8.985315 TCTCTAATAGACCCTTTATAACACGA 57.015 34.615 0.00 0.00 0.00 4.35
3028 3118 9.412460 TCTCTAATAGACCCTTTATAACACGAA 57.588 33.333 0.00 0.00 0.00 3.85
3029 3119 9.460906 CTCTAATAGACCCTTTATAACACGAAC 57.539 37.037 0.00 0.00 0.00 3.95
3030 3120 8.131100 TCTAATAGACCCTTTATAACACGAACG 58.869 37.037 0.00 0.00 0.00 3.95
3031 3121 3.256558 AGACCCTTTATAACACGAACGC 58.743 45.455 0.00 0.00 0.00 4.84
3032 3122 3.056322 AGACCCTTTATAACACGAACGCT 60.056 43.478 0.00 0.00 0.00 5.07
3033 3123 3.667360 ACCCTTTATAACACGAACGCTT 58.333 40.909 0.00 0.00 0.00 4.68
3034 3124 4.819769 ACCCTTTATAACACGAACGCTTA 58.180 39.130 0.00 0.00 0.00 3.09
3035 3125 5.237048 ACCCTTTATAACACGAACGCTTAA 58.763 37.500 0.00 0.00 0.00 1.85
3036 3126 5.700373 ACCCTTTATAACACGAACGCTTAAA 59.300 36.000 0.00 0.00 0.00 1.52
3037 3127 6.128472 ACCCTTTATAACACGAACGCTTAAAG 60.128 38.462 0.00 0.00 0.00 1.85
3038 3128 5.731263 CCTTTATAACACGAACGCTTAAAGC 59.269 40.000 0.00 0.00 38.02 3.51
3039 3129 3.734776 ATAACACGAACGCTTAAAGCC 57.265 42.857 0.00 0.00 38.18 4.35
3040 3130 0.233848 AACACGAACGCTTAAAGCCG 59.766 50.000 0.00 0.00 38.18 5.52
3041 3131 0.877213 ACACGAACGCTTAAAGCCGT 60.877 50.000 0.00 0.00 38.18 5.68
3042 3132 0.233848 CACGAACGCTTAAAGCCGTT 59.766 50.000 8.59 8.59 39.37 4.44
3043 3133 1.456544 CACGAACGCTTAAAGCCGTTA 59.543 47.619 8.76 0.00 37.80 3.18
3044 3134 2.093152 CACGAACGCTTAAAGCCGTTAT 59.907 45.455 8.76 0.46 37.80 1.89
3045 3135 3.304026 CACGAACGCTTAAAGCCGTTATA 59.696 43.478 8.76 0.00 37.80 0.98
3046 3136 3.925913 ACGAACGCTTAAAGCCGTTATAA 59.074 39.130 8.76 0.00 37.80 0.98
3047 3137 4.032104 ACGAACGCTTAAAGCCGTTATAAG 59.968 41.667 8.76 0.00 37.80 1.73
3048 3138 4.549489 CGAACGCTTAAAGCCGTTATAAGG 60.549 45.833 8.76 0.00 37.80 2.69
3049 3139 4.127566 ACGCTTAAAGCCGTTATAAGGA 57.872 40.909 6.74 0.00 38.18 3.36
3050 3140 3.867493 ACGCTTAAAGCCGTTATAAGGAC 59.133 43.478 6.74 0.00 38.18 3.85
3051 3141 3.246936 CGCTTAAAGCCGTTATAAGGACC 59.753 47.826 6.74 0.00 38.18 4.46
3052 3142 3.246936 GCTTAAAGCCGTTATAAGGACCG 59.753 47.826 6.74 0.00 34.48 4.79
3053 3143 4.685924 CTTAAAGCCGTTATAAGGACCGA 58.314 43.478 6.74 0.00 0.00 4.69
3054 3144 2.884894 AAGCCGTTATAAGGACCGAG 57.115 50.000 6.74 0.00 0.00 4.63
3055 3145 2.062971 AGCCGTTATAAGGACCGAGA 57.937 50.000 6.74 0.00 0.00 4.04
3056 3146 2.381911 AGCCGTTATAAGGACCGAGAA 58.618 47.619 6.74 0.00 0.00 2.87
3057 3147 2.762327 AGCCGTTATAAGGACCGAGAAA 59.238 45.455 6.74 0.00 0.00 2.52
3058 3148 3.196254 AGCCGTTATAAGGACCGAGAAAA 59.804 43.478 6.74 0.00 0.00 2.29
3059 3149 3.934579 GCCGTTATAAGGACCGAGAAAAA 59.065 43.478 6.74 0.00 0.00 1.94
3060 3150 4.201753 GCCGTTATAAGGACCGAGAAAAAC 60.202 45.833 6.74 0.00 0.00 2.43
3061 3151 4.032104 CCGTTATAAGGACCGAGAAAAACG 59.968 45.833 6.74 10.77 37.51 3.60
3062 3152 4.622740 CGTTATAAGGACCGAGAAAAACGT 59.377 41.667 0.00 0.00 34.22 3.99
3063 3153 5.799936 CGTTATAAGGACCGAGAAAAACGTA 59.200 40.000 0.00 0.00 34.22 3.57
3064 3154 6.473455 CGTTATAAGGACCGAGAAAAACGTAT 59.527 38.462 0.00 0.00 34.22 3.06
3065 3155 7.009540 CGTTATAAGGACCGAGAAAAACGTATT 59.990 37.037 0.00 0.00 34.22 1.89
3066 3156 8.659491 GTTATAAGGACCGAGAAAAACGTATTT 58.341 33.333 0.00 0.00 0.00 1.40
3067 3157 7.677454 ATAAGGACCGAGAAAAACGTATTTT 57.323 32.000 7.77 7.77 39.81 1.82
3068 3158 8.776376 ATAAGGACCGAGAAAAACGTATTTTA 57.224 30.769 7.96 0.00 37.01 1.52
3069 3159 7.495135 AAGGACCGAGAAAAACGTATTTTAA 57.505 32.000 7.96 0.00 37.01 1.52
3070 3160 7.125536 AGGACCGAGAAAAACGTATTTTAAG 57.874 36.000 7.96 4.38 37.01 1.85
3071 3161 6.148315 AGGACCGAGAAAAACGTATTTTAAGG 59.852 38.462 7.96 11.84 37.01 2.69
3072 3162 6.147656 GGACCGAGAAAAACGTATTTTAAGGA 59.852 38.462 18.59 0.00 37.01 3.36
3073 3163 6.891624 ACCGAGAAAAACGTATTTTAAGGAC 58.108 36.000 18.59 6.92 37.01 3.85
3074 3164 6.073058 ACCGAGAAAAACGTATTTTAAGGACC 60.073 38.462 18.59 0.00 37.01 4.46
3075 3165 6.011277 CGAGAAAAACGTATTTTAAGGACCG 58.989 40.000 7.96 0.00 37.01 4.79
3076 3166 6.128849 CGAGAAAAACGTATTTTAAGGACCGA 60.129 38.462 7.96 0.00 37.01 4.69
3077 3167 7.412237 CGAGAAAAACGTATTTTAAGGACCGAT 60.412 37.037 7.96 0.00 37.01 4.18
3078 3168 8.102800 AGAAAAACGTATTTTAAGGACCGATT 57.897 30.769 7.96 0.00 37.01 3.34
3079 3169 8.570488 AGAAAAACGTATTTTAAGGACCGATTT 58.430 29.630 7.96 0.00 37.01 2.17
3080 3170 9.824534 GAAAAACGTATTTTAAGGACCGATTTA 57.175 29.630 7.96 0.00 37.01 1.40
3081 3171 9.830294 AAAAACGTATTTTAAGGACCGATTTAG 57.170 29.630 0.00 0.00 37.01 1.85
3082 3172 6.594284 ACGTATTTTAAGGACCGATTTAGC 57.406 37.500 0.00 0.00 0.00 3.09
3083 3173 6.343703 ACGTATTTTAAGGACCGATTTAGCT 58.656 36.000 0.00 0.00 0.00 3.32
3084 3174 6.257193 ACGTATTTTAAGGACCGATTTAGCTG 59.743 38.462 0.00 0.00 0.00 4.24
3085 3175 4.957759 TTTTAAGGACCGATTTAGCTGC 57.042 40.909 0.00 0.00 0.00 5.25
3086 3176 3.620427 TTAAGGACCGATTTAGCTGCA 57.380 42.857 1.02 0.00 0.00 4.41
3087 3177 2.029838 AAGGACCGATTTAGCTGCAG 57.970 50.000 10.11 10.11 0.00 4.41
3088 3178 0.905357 AGGACCGATTTAGCTGCAGT 59.095 50.000 16.64 4.79 0.00 4.40
3089 3179 1.134670 AGGACCGATTTAGCTGCAGTC 60.135 52.381 16.64 7.83 0.00 3.51
3090 3180 0.924090 GACCGATTTAGCTGCAGTCG 59.076 55.000 16.64 15.54 0.00 4.18
3091 3181 0.530744 ACCGATTTAGCTGCAGTCGA 59.469 50.000 21.26 6.13 34.46 4.20
3092 3182 1.067142 ACCGATTTAGCTGCAGTCGAA 60.067 47.619 21.26 11.25 34.46 3.71
3093 3183 1.324736 CCGATTTAGCTGCAGTCGAAC 59.675 52.381 21.26 2.92 34.46 3.95
3094 3184 1.992667 CGATTTAGCTGCAGTCGAACA 59.007 47.619 16.64 0.00 34.46 3.18
3095 3185 2.028523 CGATTTAGCTGCAGTCGAACAG 59.971 50.000 16.64 6.93 34.46 3.16
3096 3186 2.812358 TTTAGCTGCAGTCGAACAGA 57.188 45.000 16.64 0.00 35.90 3.41
3097 3187 3.319137 TTTAGCTGCAGTCGAACAGAT 57.681 42.857 16.64 10.52 35.90 2.90
3098 3188 2.568696 TAGCTGCAGTCGAACAGATC 57.431 50.000 16.64 0.00 35.90 2.75
3099 3189 0.108424 AGCTGCAGTCGAACAGATCC 60.108 55.000 16.64 0.00 35.90 3.36
3100 3190 0.108424 GCTGCAGTCGAACAGATCCT 60.108 55.000 16.64 0.00 35.90 3.24
3101 3191 1.919918 CTGCAGTCGAACAGATCCTC 58.080 55.000 5.25 0.00 35.90 3.71
3102 3192 0.171231 TGCAGTCGAACAGATCCTCG 59.829 55.000 0.00 3.67 36.39 4.63
3103 3193 0.171455 GCAGTCGAACAGATCCTCGT 59.829 55.000 8.72 0.00 36.46 4.18
3104 3194 1.400846 GCAGTCGAACAGATCCTCGTA 59.599 52.381 8.72 0.00 36.46 3.43
3105 3195 2.033550 GCAGTCGAACAGATCCTCGTAT 59.966 50.000 8.72 0.00 36.46 3.06
3106 3196 3.250280 GCAGTCGAACAGATCCTCGTATA 59.750 47.826 8.72 0.00 36.46 1.47
3107 3197 4.261072 GCAGTCGAACAGATCCTCGTATAA 60.261 45.833 8.72 0.00 36.46 0.98
3108 3198 5.563085 GCAGTCGAACAGATCCTCGTATAAT 60.563 44.000 8.72 0.00 36.46 1.28
3109 3199 6.081049 CAGTCGAACAGATCCTCGTATAATC 58.919 44.000 8.72 0.00 36.46 1.75
3110 3200 5.763698 AGTCGAACAGATCCTCGTATAATCA 59.236 40.000 8.72 0.00 36.46 2.57
3111 3201 6.262496 AGTCGAACAGATCCTCGTATAATCAA 59.738 38.462 8.72 0.00 36.46 2.57
3112 3202 6.360148 GTCGAACAGATCCTCGTATAATCAAC 59.640 42.308 8.72 0.00 36.46 3.18
3113 3203 5.629849 CGAACAGATCCTCGTATAATCAACC 59.370 44.000 0.00 0.00 0.00 3.77
3114 3204 6.515200 CGAACAGATCCTCGTATAATCAACCT 60.515 42.308 0.00 0.00 0.00 3.50
3115 3205 6.090483 ACAGATCCTCGTATAATCAACCTG 57.910 41.667 0.00 0.00 0.00 4.00
3116 3206 5.598830 ACAGATCCTCGTATAATCAACCTGT 59.401 40.000 0.00 0.00 0.00 4.00
3117 3207 6.776116 ACAGATCCTCGTATAATCAACCTGTA 59.224 38.462 0.00 0.00 0.00 2.74
3118 3208 7.287005 ACAGATCCTCGTATAATCAACCTGTAA 59.713 37.037 0.00 0.00 0.00 2.41
3119 3209 8.141909 CAGATCCTCGTATAATCAACCTGTAAA 58.858 37.037 0.00 0.00 0.00 2.01
3120 3210 8.701895 AGATCCTCGTATAATCAACCTGTAAAA 58.298 33.333 0.00 0.00 0.00 1.52
3121 3211 9.321562 GATCCTCGTATAATCAACCTGTAAAAA 57.678 33.333 0.00 0.00 0.00 1.94
3149 3239 9.384764 GAATATTCTCTAAATATACCTGCCACC 57.615 37.037 8.27 0.00 0.00 4.61
3150 3240 8.686739 ATATTCTCTAAATATACCTGCCACCT 57.313 34.615 0.00 0.00 0.00 4.00
3151 3241 6.420913 TTCTCTAAATATACCTGCCACCTC 57.579 41.667 0.00 0.00 0.00 3.85
3152 3242 4.523173 TCTCTAAATATACCTGCCACCTCG 59.477 45.833 0.00 0.00 0.00 4.63
3153 3243 2.256117 AAATATACCTGCCACCTCGC 57.744 50.000 0.00 0.00 0.00 5.03
3154 3244 0.396811 AATATACCTGCCACCTCGCC 59.603 55.000 0.00 0.00 0.00 5.54
3155 3245 0.471971 ATATACCTGCCACCTCGCCT 60.472 55.000 0.00 0.00 0.00 5.52
3156 3246 0.689745 TATACCTGCCACCTCGCCTT 60.690 55.000 0.00 0.00 0.00 4.35
3157 3247 1.972660 ATACCTGCCACCTCGCCTTC 61.973 60.000 0.00 0.00 0.00 3.46
3158 3248 4.785453 CCTGCCACCTCGCCTTCC 62.785 72.222 0.00 0.00 0.00 3.46
3159 3249 3.710722 CTGCCACCTCGCCTTCCT 61.711 66.667 0.00 0.00 0.00 3.36
3160 3250 3.672295 CTGCCACCTCGCCTTCCTC 62.672 68.421 0.00 0.00 0.00 3.71
3161 3251 4.821589 GCCACCTCGCCTTCCTCG 62.822 72.222 0.00 0.00 0.00 4.63
3162 3252 3.068691 CCACCTCGCCTTCCTCGA 61.069 66.667 0.00 0.00 34.52 4.04
3163 3253 2.182030 CACCTCGCCTTCCTCGAC 59.818 66.667 0.00 0.00 32.08 4.20
3164 3254 3.441290 ACCTCGCCTTCCTCGACG 61.441 66.667 0.00 0.00 32.08 5.12
3165 3255 4.856607 CCTCGCCTTCCTCGACGC 62.857 72.222 0.00 0.00 32.08 5.19
3166 3256 4.116328 CTCGCCTTCCTCGACGCA 62.116 66.667 0.00 0.00 32.08 5.24
3167 3257 4.415332 TCGCCTTCCTCGACGCAC 62.415 66.667 0.00 0.00 0.00 5.34
3171 3261 4.717629 CTTCCTCGACGCACCGCA 62.718 66.667 0.00 0.00 0.00 5.69
3189 3279 4.506255 CCCCCGCCACCAATCCTC 62.506 72.222 0.00 0.00 0.00 3.71
3190 3280 4.506255 CCCCGCCACCAATCCTCC 62.506 72.222 0.00 0.00 0.00 4.30
3191 3281 4.506255 CCCGCCACCAATCCTCCC 62.506 72.222 0.00 0.00 0.00 4.30
3192 3282 3.411517 CCGCCACCAATCCTCCCT 61.412 66.667 0.00 0.00 0.00 4.20
3193 3283 2.677228 CGCCACCAATCCTCCCTT 59.323 61.111 0.00 0.00 0.00 3.95
3194 3284 1.750399 CGCCACCAATCCTCCCTTG 60.750 63.158 0.00 0.00 0.00 3.61
3195 3285 1.691219 GCCACCAATCCTCCCTTGA 59.309 57.895 0.00 0.00 0.00 3.02
3196 3286 0.259938 GCCACCAATCCTCCCTTGAT 59.740 55.000 0.00 0.00 0.00 2.57
3197 3287 2.025863 GCCACCAATCCTCCCTTGATG 61.026 57.143 0.00 0.00 0.00 3.07
3198 3288 1.396653 CACCAATCCTCCCTTGATGC 58.603 55.000 0.00 0.00 0.00 3.91
3199 3289 0.107017 ACCAATCCTCCCTTGATGCG 60.107 55.000 0.00 0.00 0.00 4.73
3200 3290 1.450531 CCAATCCTCCCTTGATGCGC 61.451 60.000 0.00 0.00 0.00 6.09
3201 3291 1.152881 AATCCTCCCTTGATGCGCC 60.153 57.895 4.18 0.00 0.00 6.53
3202 3292 2.947938 AATCCTCCCTTGATGCGCCG 62.948 60.000 4.18 0.00 0.00 6.46
3223 3313 3.775654 CCCCACCGTGCCTCTCTC 61.776 72.222 0.00 0.00 0.00 3.20
3224 3314 4.135153 CCCACCGTGCCTCTCTCG 62.135 72.222 0.00 0.00 0.00 4.04
3225 3315 3.062466 CCACCGTGCCTCTCTCGA 61.062 66.667 0.00 0.00 33.89 4.04
3226 3316 2.179517 CACCGTGCCTCTCTCGAC 59.820 66.667 0.00 0.00 33.89 4.20
3227 3317 3.432588 ACCGTGCCTCTCTCGACG 61.433 66.667 0.00 0.00 33.89 5.12
3228 3318 4.838486 CCGTGCCTCTCTCGACGC 62.838 72.222 0.00 0.00 33.89 5.19
3236 3326 4.933064 CTCTCGACGCGCCCCATC 62.933 72.222 5.73 0.00 0.00 3.51
3254 3344 3.425422 GCCTCCATGCGTCAATCC 58.575 61.111 0.00 0.00 0.00 3.01
3255 3345 1.451927 GCCTCCATGCGTCAATCCA 60.452 57.895 0.00 0.00 0.00 3.41
3256 3346 1.031571 GCCTCCATGCGTCAATCCAA 61.032 55.000 0.00 0.00 0.00 3.53
3257 3347 1.683943 CCTCCATGCGTCAATCCAAT 58.316 50.000 0.00 0.00 0.00 3.16
3258 3348 1.605710 CCTCCATGCGTCAATCCAATC 59.394 52.381 0.00 0.00 0.00 2.67
3259 3349 2.291365 CTCCATGCGTCAATCCAATCA 58.709 47.619 0.00 0.00 0.00 2.57
3260 3350 2.016318 TCCATGCGTCAATCCAATCAC 58.984 47.619 0.00 0.00 0.00 3.06
3261 3351 2.019249 CCATGCGTCAATCCAATCACT 58.981 47.619 0.00 0.00 0.00 3.41
3262 3352 2.223409 CCATGCGTCAATCCAATCACTG 60.223 50.000 0.00 0.00 0.00 3.66
3263 3353 2.183478 TGCGTCAATCCAATCACTGT 57.817 45.000 0.00 0.00 0.00 3.55
3264 3354 2.076100 TGCGTCAATCCAATCACTGTC 58.924 47.619 0.00 0.00 0.00 3.51
3265 3355 1.061131 GCGTCAATCCAATCACTGTCG 59.939 52.381 0.00 0.00 0.00 4.35
3266 3356 1.061131 CGTCAATCCAATCACTGTCGC 59.939 52.381 0.00 0.00 0.00 5.19
3267 3357 1.398390 GTCAATCCAATCACTGTCGCC 59.602 52.381 0.00 0.00 0.00 5.54
3268 3358 0.734889 CAATCCAATCACTGTCGCCC 59.265 55.000 0.00 0.00 0.00 6.13
3269 3359 0.394352 AATCCAATCACTGTCGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
3270 3360 1.274703 ATCCAATCACTGTCGCCCCT 61.275 55.000 0.00 0.00 0.00 4.79
3271 3361 1.002134 CCAATCACTGTCGCCCCTT 60.002 57.895 0.00 0.00 0.00 3.95
3272 3362 1.026718 CCAATCACTGTCGCCCCTTC 61.027 60.000 0.00 0.00 0.00 3.46
3273 3363 0.036010 CAATCACTGTCGCCCCTTCT 60.036 55.000 0.00 0.00 0.00 2.85
3274 3364 0.036010 AATCACTGTCGCCCCTTCTG 60.036 55.000 0.00 0.00 0.00 3.02
3275 3365 2.527951 ATCACTGTCGCCCCTTCTGC 62.528 60.000 0.00 0.00 0.00 4.26
3276 3366 4.021925 ACTGTCGCCCCTTCTGCC 62.022 66.667 0.00 0.00 0.00 4.85
3277 3367 4.785453 CTGTCGCCCCTTCTGCCC 62.785 72.222 0.00 0.00 0.00 5.36
3294 3384 4.452733 CGCCGGACTGGGGTTCTC 62.453 72.222 5.05 0.00 45.41 2.87
3295 3385 4.097361 GCCGGACTGGGGTTCTCC 62.097 72.222 5.05 0.00 38.63 3.71
3296 3386 2.606519 CCGGACTGGGGTTCTCCA 60.607 66.667 0.00 0.00 37.22 3.86
3297 3387 2.663196 CGGACTGGGGTTCTCCAC 59.337 66.667 0.00 0.00 37.22 4.02
3298 3388 2.955881 CGGACTGGGGTTCTCCACC 61.956 68.421 0.00 0.00 46.46 4.61
3318 3408 4.994471 CCACTGCTGCTCGCACCA 62.994 66.667 0.00 0.00 45.47 4.17
3319 3409 3.720193 CACTGCTGCTCGCACCAC 61.720 66.667 0.00 0.00 45.47 4.16
3320 3410 4.996434 ACTGCTGCTCGCACCACC 62.996 66.667 0.00 0.00 45.47 4.61
3321 3411 4.994471 CTGCTGCTCGCACCACCA 62.994 66.667 0.00 0.00 45.47 4.17
3322 3412 4.994471 TGCTGCTCGCACCACCAG 62.994 66.667 0.00 0.00 45.47 4.00
3324 3414 4.994471 CTGCTCGCACCACCAGCA 62.994 66.667 0.00 0.00 40.90 4.41
3325 3415 4.994471 TGCTCGCACCACCAGCAG 62.994 66.667 0.00 0.00 38.25 4.24
3326 3416 4.687215 GCTCGCACCACCAGCAGA 62.687 66.667 0.00 0.00 33.06 4.26
3327 3417 2.433838 CTCGCACCACCAGCAGAG 60.434 66.667 0.00 0.00 0.00 3.35
3328 3418 4.687215 TCGCACCACCAGCAGAGC 62.687 66.667 0.00 0.00 0.00 4.09
3330 3420 4.648626 GCACCACCAGCAGAGCCA 62.649 66.667 0.00 0.00 0.00 4.75
3331 3421 2.670934 CACCACCAGCAGAGCCAC 60.671 66.667 0.00 0.00 0.00 5.01
3332 3422 3.958860 ACCACCAGCAGAGCCACC 61.959 66.667 0.00 0.00 0.00 4.61
3345 3435 4.114997 CCACCGCCAACCGCAATC 62.115 66.667 0.00 0.00 37.30 2.67
3346 3436 3.361158 CACCGCCAACCGCAATCA 61.361 61.111 0.00 0.00 37.30 2.57
3347 3437 3.055719 ACCGCCAACCGCAATCAG 61.056 61.111 0.00 0.00 37.30 2.90
3348 3438 4.481112 CCGCCAACCGCAATCAGC 62.481 66.667 0.00 0.00 37.30 4.26
3349 3439 4.481112 CGCCAACCGCAATCAGCC 62.481 66.667 0.00 0.00 41.38 4.85
3350 3440 4.133796 GCCAACCGCAATCAGCCC 62.134 66.667 0.00 0.00 41.38 5.19
3351 3441 3.451894 CCAACCGCAATCAGCCCC 61.452 66.667 0.00 0.00 41.38 5.80
3352 3442 3.814268 CAACCGCAATCAGCCCCG 61.814 66.667 0.00 0.00 41.38 5.73
3358 3448 3.508840 CAATCAGCCCCGCGGTTC 61.509 66.667 26.12 15.19 0.00 3.62
3359 3449 4.028490 AATCAGCCCCGCGGTTCA 62.028 61.111 26.12 2.89 0.00 3.18
3360 3450 4.778143 ATCAGCCCCGCGGTTCAC 62.778 66.667 26.12 10.19 0.00 3.18
3373 3463 2.011540 GGTTCACCGTGATCCTCTTC 57.988 55.000 17.99 0.00 34.27 2.87
3374 3464 1.405661 GGTTCACCGTGATCCTCTTCC 60.406 57.143 17.99 3.66 34.27 3.46
3375 3465 0.530744 TTCACCGTGATCCTCTTCCG 59.469 55.000 1.09 0.00 0.00 4.30
3376 3466 1.519455 CACCGTGATCCTCTTCCGC 60.519 63.158 0.00 0.00 0.00 5.54
3377 3467 1.982395 ACCGTGATCCTCTTCCGCA 60.982 57.895 0.00 0.00 0.00 5.69
3378 3468 1.519455 CCGTGATCCTCTTCCGCAC 60.519 63.158 0.00 0.00 0.00 5.34
3379 3469 1.874019 CGTGATCCTCTTCCGCACG 60.874 63.158 0.00 0.00 44.78 5.34
3380 3470 1.519455 GTGATCCTCTTCCGCACGG 60.519 63.158 1.73 1.73 0.00 4.94
3381 3471 2.107141 GATCCTCTTCCGCACGGG 59.893 66.667 9.58 0.00 35.59 5.28
3382 3472 4.162690 ATCCTCTTCCGCACGGGC 62.163 66.667 9.58 0.00 34.94 6.13
3392 3482 4.740822 GCACGGGCCCCAACATCT 62.741 66.667 18.66 0.00 0.00 2.90
3393 3483 2.438434 CACGGGCCCCAACATCTC 60.438 66.667 18.66 0.00 0.00 2.75
3394 3484 3.728373 ACGGGCCCCAACATCTCC 61.728 66.667 18.66 0.00 0.00 3.71
3395 3485 3.727258 CGGGCCCCAACATCTCCA 61.727 66.667 18.66 0.00 0.00 3.86
3396 3486 2.043953 GGGCCCCAACATCTCCAC 60.044 66.667 12.23 0.00 0.00 4.02
3397 3487 2.438434 GGCCCCAACATCTCCACG 60.438 66.667 0.00 0.00 0.00 4.94
3398 3488 3.134127 GCCCCAACATCTCCACGC 61.134 66.667 0.00 0.00 0.00 5.34
3399 3489 2.438434 CCCCAACATCTCCACGCC 60.438 66.667 0.00 0.00 0.00 5.68
3400 3490 2.350895 CCCAACATCTCCACGCCA 59.649 61.111 0.00 0.00 0.00 5.69
3401 3491 1.303236 CCCAACATCTCCACGCCAA 60.303 57.895 0.00 0.00 0.00 4.52
3402 3492 1.586154 CCCAACATCTCCACGCCAAC 61.586 60.000 0.00 0.00 0.00 3.77
3403 3493 0.606401 CCAACATCTCCACGCCAACT 60.606 55.000 0.00 0.00 0.00 3.16
3404 3494 0.518636 CAACATCTCCACGCCAACTG 59.481 55.000 0.00 0.00 0.00 3.16
3405 3495 0.108585 AACATCTCCACGCCAACTGT 59.891 50.000 0.00 0.00 0.00 3.55
3406 3496 0.320771 ACATCTCCACGCCAACTGTC 60.321 55.000 0.00 0.00 0.00 3.51
3407 3497 0.320683 CATCTCCACGCCAACTGTCA 60.321 55.000 0.00 0.00 0.00 3.58
3408 3498 0.320771 ATCTCCACGCCAACTGTCAC 60.321 55.000 0.00 0.00 0.00 3.67
3409 3499 2.279851 TCCACGCCAACTGTCACG 60.280 61.111 0.00 0.00 0.00 4.35
3410 3500 3.345808 CCACGCCAACTGTCACGG 61.346 66.667 0.00 0.00 0.00 4.94
3411 3501 2.279851 CACGCCAACTGTCACGGA 60.280 61.111 0.00 0.00 0.00 4.69
3412 3502 2.029073 ACGCCAACTGTCACGGAG 59.971 61.111 0.00 0.00 0.00 4.63
3413 3503 2.338620 CGCCAACTGTCACGGAGA 59.661 61.111 0.00 0.00 0.00 3.71
3414 3504 1.079819 CGCCAACTGTCACGGAGAT 60.080 57.895 0.00 0.00 0.00 2.75
3415 3505 0.670546 CGCCAACTGTCACGGAGATT 60.671 55.000 0.00 0.00 0.00 2.40
3416 3506 0.798776 GCCAACTGTCACGGAGATTG 59.201 55.000 0.00 0.00 0.00 2.67
3417 3507 1.608025 GCCAACTGTCACGGAGATTGA 60.608 52.381 0.00 0.00 0.00 2.57
3418 3508 2.069273 CCAACTGTCACGGAGATTGAC 58.931 52.381 0.00 0.00 43.22 3.18
3419 3509 1.721389 CAACTGTCACGGAGATTGACG 59.279 52.381 0.00 0.00 45.44 4.35
3420 3510 0.388649 ACTGTCACGGAGATTGACGC 60.389 55.000 0.00 0.00 45.44 5.19
3421 3511 0.109086 CTGTCACGGAGATTGACGCT 60.109 55.000 0.00 0.00 45.44 5.07
3422 3512 0.109272 TGTCACGGAGATTGACGCTC 60.109 55.000 0.00 0.00 45.44 5.03
3423 3513 0.171455 GTCACGGAGATTGACGCTCT 59.829 55.000 0.00 0.00 34.41 4.09
3424 3514 0.452184 TCACGGAGATTGACGCTCTC 59.548 55.000 0.00 0.00 38.74 3.20
3425 3515 0.863538 CACGGAGATTGACGCTCTCG 60.864 60.000 0.00 0.00 40.07 4.04
3436 3526 4.539881 GCTCTCGTCGCCGGTCTC 62.540 72.222 1.90 0.00 33.95 3.36
3437 3527 3.878519 CTCTCGTCGCCGGTCTCC 61.879 72.222 1.90 0.00 33.95 3.71
3438 3528 4.710167 TCTCGTCGCCGGTCTCCA 62.710 66.667 1.90 0.00 33.95 3.86
3439 3529 4.477975 CTCGTCGCCGGTCTCCAC 62.478 72.222 1.90 0.00 33.95 4.02
3441 3531 4.477975 CGTCGCCGGTCTCCACTC 62.478 72.222 1.90 0.00 0.00 3.51
3442 3532 4.477975 GTCGCCGGTCTCCACTCG 62.478 72.222 1.90 0.00 0.00 4.18
3461 3551 4.452733 CGCCCCCGACAACCTCTC 62.453 72.222 0.00 0.00 36.29 3.20
3462 3552 3.003763 GCCCCCGACAACCTCTCT 61.004 66.667 0.00 0.00 0.00 3.10
3463 3553 2.982130 CCCCCGACAACCTCTCTG 59.018 66.667 0.00 0.00 0.00 3.35
3464 3554 1.913762 CCCCCGACAACCTCTCTGT 60.914 63.158 0.00 0.00 0.00 3.41
3465 3555 1.592223 CCCCGACAACCTCTCTGTC 59.408 63.158 0.00 0.00 39.89 3.51
3466 3556 0.900647 CCCCGACAACCTCTCTGTCT 60.901 60.000 1.88 0.00 40.90 3.41
3467 3557 0.969894 CCCGACAACCTCTCTGTCTT 59.030 55.000 1.88 0.00 40.90 3.01
3468 3558 1.067495 CCCGACAACCTCTCTGTCTTC 60.067 57.143 1.88 0.00 40.90 2.87
3469 3559 1.889829 CCGACAACCTCTCTGTCTTCT 59.110 52.381 1.88 0.00 40.90 2.85
3470 3560 2.094957 CCGACAACCTCTCTGTCTTCTC 60.095 54.545 1.88 0.00 40.90 2.87
3471 3561 2.094957 CGACAACCTCTCTGTCTTCTCC 60.095 54.545 1.88 0.00 40.90 3.71
3472 3562 3.161866 GACAACCTCTCTGTCTTCTCCT 58.838 50.000 0.00 0.00 40.10 3.69
3473 3563 3.161866 ACAACCTCTCTGTCTTCTCCTC 58.838 50.000 0.00 0.00 0.00 3.71
3474 3564 2.495669 CAACCTCTCTGTCTTCTCCTCC 59.504 54.545 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.310423 CCATGAGGATTAATGGGAGTATTACGA 60.310 40.741 0.00 0.00 39.82 3.43
2 3 6.818644 CCATGAGGATTAATGGGAGTATTACG 59.181 42.308 0.00 0.00 39.82 3.18
3 4 7.918076 TCCATGAGGATTAATGGGAGTATTAC 58.082 38.462 0.00 0.00 43.09 1.89
4 5 8.518720 TTCCATGAGGATTAATGGGAGTATTA 57.481 34.615 0.00 0.00 45.26 0.98
5 6 7.406620 TTCCATGAGGATTAATGGGAGTATT 57.593 36.000 0.00 0.00 45.26 1.89
6 7 7.463618 AGATTCCATGAGGATTAATGGGAGTAT 59.536 37.037 0.00 0.00 45.26 2.12
20 21 8.408601 CCTTTTGTAAATGTAGATTCCATGAGG 58.591 37.037 0.00 0.00 0.00 3.86
22 23 9.699410 ATCCTTTTGTAAATGTAGATTCCATGA 57.301 29.630 0.00 0.00 0.00 3.07
46 47 2.490115 CGGACTGAGACCTAGCCATATC 59.510 54.545 0.00 0.00 0.00 1.63
49 50 0.259065 TCGGACTGAGACCTAGCCAT 59.741 55.000 0.00 0.00 0.00 4.40
59 60 5.962433 TGGTTAAATCTTAGTCGGACTGAG 58.038 41.667 20.49 20.49 33.58 3.35
61 62 6.164176 ACTTGGTTAAATCTTAGTCGGACTG 58.836 40.000 20.58 5.05 0.00 3.51
65 66 7.172703 ACTGAAACTTGGTTAAATCTTAGTCGG 59.827 37.037 0.00 0.00 0.00 4.79
169 170 7.114529 ACAGTCTTGTTAAGTCGACTTTAATCG 59.885 37.037 33.82 19.65 37.60 3.34
170 171 8.295569 ACAGTCTTGTTAAGTCGACTTTAATC 57.704 34.615 33.82 20.77 37.40 1.75
171 172 8.658499 AACAGTCTTGTTAAGTCGACTTTAAT 57.342 30.769 33.82 14.27 45.45 1.40
172 173 8.483307 AAACAGTCTTGTTAAGTCGACTTTAA 57.517 30.769 33.82 23.45 46.54 1.52
174 175 6.980051 AAACAGTCTTGTTAAGTCGACTTT 57.020 33.333 33.82 18.61 46.54 2.66
175 176 7.037438 TGTAAACAGTCTTGTTAAGTCGACTT 58.963 34.615 31.70 31.70 46.54 3.01
178 179 7.830940 TTTGTAAACAGTCTTGTTAAGTCGA 57.169 32.000 0.00 0.00 46.54 4.20
182 206 7.222031 GGGCTTTTTGTAAACAGTCTTGTTAAG 59.778 37.037 0.00 0.00 46.54 1.85
199 223 0.038618 GCGGTGGTTAGGGCTTTTTG 60.039 55.000 0.00 0.00 0.00 2.44
209 233 2.419574 GCTTTCCTCTATGCGGTGGTTA 60.420 50.000 0.00 0.00 0.00 2.85
213 237 1.737838 TTGCTTTCCTCTATGCGGTG 58.262 50.000 0.00 0.00 0.00 4.94
651 699 9.692749 CTTGTAGTCAATGTACGGTATTGATAT 57.307 33.333 9.55 5.74 43.90 1.63
661 709 5.924254 TGGAGAAACTTGTAGTCAATGTACG 59.076 40.000 0.00 0.00 32.82 3.67
703 751 2.919229 GCGCAACCTTTTCATCAATCAG 59.081 45.455 0.30 0.00 0.00 2.90
721 772 2.465920 CTGTCTTGTCGAACGCGC 59.534 61.111 5.73 0.00 37.46 6.86
722 773 3.000080 GCCTGTCTTGTCGAACGCG 62.000 63.158 3.53 3.53 39.35 6.01
759 810 3.719268 TTTGCTCCTGCCTGAATCTAA 57.281 42.857 0.00 0.00 38.71 2.10
841 892 4.309099 TGACTACGGCGTTCATACTTTTT 58.691 39.130 21.24 0.00 0.00 1.94
842 893 3.916761 TGACTACGGCGTTCATACTTTT 58.083 40.909 21.24 0.00 0.00 2.27
843 894 3.057033 ACTGACTACGGCGTTCATACTTT 60.057 43.478 21.24 0.00 0.00 2.66
844 895 2.490903 ACTGACTACGGCGTTCATACTT 59.509 45.455 21.24 0.00 0.00 2.24
845 896 2.089980 ACTGACTACGGCGTTCATACT 58.910 47.619 21.24 0.00 0.00 2.12
846 897 2.448219 GACTGACTACGGCGTTCATAC 58.552 52.381 21.24 9.84 0.00 2.39
847 898 1.063027 CGACTGACTACGGCGTTCATA 59.937 52.381 21.24 0.00 0.00 2.15
848 899 0.179171 CGACTGACTACGGCGTTCAT 60.179 55.000 21.24 3.50 0.00 2.57
849 900 1.208358 CGACTGACTACGGCGTTCA 59.792 57.895 21.24 16.41 0.00 3.18
859 910 0.597637 CTTTGGCGTGACGACTGACT 60.598 55.000 13.72 0.00 35.04 3.41
933 994 0.877071 CCTTGATTCGCTGCTGTTGT 59.123 50.000 0.00 0.00 0.00 3.32
961 1022 3.894759 TGGGAGACTAGTTATGCGTAGT 58.105 45.455 0.00 0.00 31.97 2.73
1006 1067 1.683790 GAATCGTGTCGCGGAGTTGG 61.684 60.000 6.13 0.00 41.72 3.77
1011 1072 4.137872 GGGGAATCGTGTCGCGGA 62.138 66.667 6.13 0.00 41.72 5.54
1031 1092 1.728069 CCGGCGAGAAGAGAATCGA 59.272 57.895 9.30 0.00 42.67 3.59
1184 1253 1.452289 CGTGGTGGTGGTGGTTTCA 60.452 57.895 0.00 0.00 0.00 2.69
1187 1256 3.767630 GAGCGTGGTGGTGGTGGTT 62.768 63.158 0.00 0.00 0.00 3.67
1802 1883 0.959372 TCCTCGAGTCCCTGTCGAAC 60.959 60.000 12.31 0.00 45.37 3.95
2489 2573 4.144681 GCTGAGCAGAGCAACGCG 62.145 66.667 3.53 3.53 38.95 6.01
2539 2628 3.804325 TCTTTTCTTCTGTTCAGTGAGCG 59.196 43.478 2.32 0.00 0.00 5.03
2596 2685 6.933521 AGTAATCATCATCATCAGTTAGGTGC 59.066 38.462 0.00 0.00 0.00 5.01
2643 2733 4.466370 ACCACTCCAGTTAAGATTGATCGA 59.534 41.667 0.00 0.00 0.00 3.59
2663 2753 1.254026 AGCTTGCGTACACTCTACCA 58.746 50.000 0.00 0.00 0.00 3.25
2664 2754 2.365408 AAGCTTGCGTACACTCTACC 57.635 50.000 0.00 0.00 0.00 3.18
2665 2755 2.412089 CCAAAGCTTGCGTACACTCTAC 59.588 50.000 0.00 0.00 0.00 2.59
2717 2807 2.444140 CCGGGGGAGGGAGTACTG 60.444 72.222 0.00 0.00 0.00 2.74
2719 2809 2.443577 GACCGGGGGAGGGAGTAC 60.444 72.222 6.32 0.00 35.02 2.73
2723 2813 3.510432 AAAAGGACCGGGGGAGGGA 62.510 63.158 6.32 0.00 35.02 4.20
2724 2814 1.209523 TAAAAAGGACCGGGGGAGGG 61.210 60.000 6.32 0.00 35.02 4.30
2725 2815 0.255033 CTAAAAAGGACCGGGGGAGG 59.745 60.000 6.32 0.00 37.30 4.30
2726 2816 0.255033 CCTAAAAAGGACCGGGGGAG 59.745 60.000 6.32 0.00 0.00 4.30
2727 2817 0.476219 ACCTAAAAAGGACCGGGGGA 60.476 55.000 6.32 0.00 0.00 4.81
2728 2818 0.034767 GACCTAAAAAGGACCGGGGG 60.035 60.000 6.32 0.00 0.00 5.40
2729 2819 0.392060 CGACCTAAAAAGGACCGGGG 60.392 60.000 6.32 0.00 0.00 5.73
2730 2820 1.022982 GCGACCTAAAAAGGACCGGG 61.023 60.000 6.32 0.00 32.58 5.73
2731 2821 0.320946 TGCGACCTAAAAAGGACCGG 60.321 55.000 0.00 0.00 32.58 5.28
2732 2822 1.734163 ATGCGACCTAAAAAGGACCG 58.266 50.000 0.00 2.99 34.05 4.79
2733 2823 5.818857 TGTTATATGCGACCTAAAAAGGACC 59.181 40.000 0.00 0.00 0.00 4.46
2734 2824 6.913873 TGTTATATGCGACCTAAAAAGGAC 57.086 37.500 0.00 0.00 0.00 3.85
2735 2825 8.514330 AAATGTTATATGCGACCTAAAAAGGA 57.486 30.769 0.00 0.00 0.00 3.36
2752 2842 9.429359 CGAGGCTTGATCTTAGATAAATGTTAT 57.571 33.333 0.00 0.00 0.00 1.89
2753 2843 8.421784 ACGAGGCTTGATCTTAGATAAATGTTA 58.578 33.333 9.20 0.00 0.00 2.41
2754 2844 7.275920 ACGAGGCTTGATCTTAGATAAATGTT 58.724 34.615 9.20 0.00 0.00 2.71
2755 2845 6.821388 ACGAGGCTTGATCTTAGATAAATGT 58.179 36.000 9.20 0.00 0.00 2.71
2756 2846 8.818141 TTACGAGGCTTGATCTTAGATAAATG 57.182 34.615 9.20 0.00 0.00 2.32
2757 2847 9.482627 CTTTACGAGGCTTGATCTTAGATAAAT 57.517 33.333 9.20 0.00 0.00 1.40
2758 2848 8.475639 ACTTTACGAGGCTTGATCTTAGATAAA 58.524 33.333 9.20 0.00 0.00 1.40
2759 2849 8.008513 ACTTTACGAGGCTTGATCTTAGATAA 57.991 34.615 9.20 0.00 0.00 1.75
2760 2850 7.584122 ACTTTACGAGGCTTGATCTTAGATA 57.416 36.000 9.20 0.00 0.00 1.98
2761 2851 6.472686 ACTTTACGAGGCTTGATCTTAGAT 57.527 37.500 9.20 0.00 0.00 1.98
2762 2852 5.916661 ACTTTACGAGGCTTGATCTTAGA 57.083 39.130 9.20 0.00 0.00 2.10
2763 2853 6.590292 TCAAACTTTACGAGGCTTGATCTTAG 59.410 38.462 9.20 1.25 30.70 2.18
2764 2854 6.460781 TCAAACTTTACGAGGCTTGATCTTA 58.539 36.000 9.20 0.00 30.70 2.10
2765 2855 5.305585 TCAAACTTTACGAGGCTTGATCTT 58.694 37.500 9.20 0.00 30.70 2.40
2766 2856 4.894784 TCAAACTTTACGAGGCTTGATCT 58.105 39.130 9.20 0.00 30.70 2.75
2767 2857 5.351465 TGATCAAACTTTACGAGGCTTGATC 59.649 40.000 9.20 10.52 46.36 2.92
2768 2858 5.245531 TGATCAAACTTTACGAGGCTTGAT 58.754 37.500 9.20 0.00 41.21 2.57
2769 2859 4.637276 TGATCAAACTTTACGAGGCTTGA 58.363 39.130 9.20 0.00 36.42 3.02
2770 2860 5.551760 ATGATCAAACTTTACGAGGCTTG 57.448 39.130 0.00 0.00 0.00 4.01
2771 2861 6.575162 AAATGATCAAACTTTACGAGGCTT 57.425 33.333 0.00 0.00 0.00 4.35
2772 2862 6.575162 AAAATGATCAAACTTTACGAGGCT 57.425 33.333 0.00 0.00 0.00 4.58
2773 2863 8.911247 ATAAAAATGATCAAACTTTACGAGGC 57.089 30.769 0.00 0.00 0.00 4.70
2910 3000 9.739276 TCAGACTTCATAAAGTTTGACCATATT 57.261 29.630 0.00 0.00 46.18 1.28
2933 3023 8.429493 TGCATATAAGAATTGTCTGAAGTCAG 57.571 34.615 1.65 1.65 45.08 3.51
2934 3024 8.791327 TTGCATATAAGAATTGTCTGAAGTCA 57.209 30.769 0.00 0.00 33.05 3.41
2965 3055 6.649557 CCGTATGTACTCTCTTTGGTCTTTTT 59.350 38.462 0.00 0.00 0.00 1.94
2966 3056 6.164176 CCGTATGTACTCTCTTTGGTCTTTT 58.836 40.000 0.00 0.00 0.00 2.27
2967 3057 5.337330 CCCGTATGTACTCTCTTTGGTCTTT 60.337 44.000 0.00 0.00 0.00 2.52
2968 3058 4.159879 CCCGTATGTACTCTCTTTGGTCTT 59.840 45.833 0.00 0.00 0.00 3.01
2969 3059 3.700038 CCCGTATGTACTCTCTTTGGTCT 59.300 47.826 0.00 0.00 0.00 3.85
2970 3060 3.737355 GCCCGTATGTACTCTCTTTGGTC 60.737 52.174 0.00 0.00 0.00 4.02
2971 3061 2.167900 GCCCGTATGTACTCTCTTTGGT 59.832 50.000 0.00 0.00 0.00 3.67
2972 3062 2.167693 TGCCCGTATGTACTCTCTTTGG 59.832 50.000 0.00 0.00 0.00 3.28
2973 3063 3.520290 TGCCCGTATGTACTCTCTTTG 57.480 47.619 0.00 0.00 0.00 2.77
2974 3064 3.704566 TGATGCCCGTATGTACTCTCTTT 59.295 43.478 0.00 0.00 0.00 2.52
2975 3065 3.068307 GTGATGCCCGTATGTACTCTCTT 59.932 47.826 0.00 0.00 0.00 2.85
2976 3066 2.623889 GTGATGCCCGTATGTACTCTCT 59.376 50.000 0.00 0.00 0.00 3.10
2977 3067 2.361119 TGTGATGCCCGTATGTACTCTC 59.639 50.000 0.00 0.00 0.00 3.20
2978 3068 2.384828 TGTGATGCCCGTATGTACTCT 58.615 47.619 0.00 0.00 0.00 3.24
2979 3069 2.864343 GTTGTGATGCCCGTATGTACTC 59.136 50.000 0.00 0.00 0.00 2.59
2980 3070 2.235155 TGTTGTGATGCCCGTATGTACT 59.765 45.455 0.00 0.00 0.00 2.73
2981 3071 2.623535 TGTTGTGATGCCCGTATGTAC 58.376 47.619 0.00 0.00 0.00 2.90
2982 3072 3.133901 AGATGTTGTGATGCCCGTATGTA 59.866 43.478 0.00 0.00 0.00 2.29
2983 3073 2.092968 AGATGTTGTGATGCCCGTATGT 60.093 45.455 0.00 0.00 0.00 2.29
2984 3074 2.545526 GAGATGTTGTGATGCCCGTATG 59.454 50.000 0.00 0.00 0.00 2.39
2985 3075 2.435805 AGAGATGTTGTGATGCCCGTAT 59.564 45.455 0.00 0.00 0.00 3.06
2986 3076 1.831106 AGAGATGTTGTGATGCCCGTA 59.169 47.619 0.00 0.00 0.00 4.02
2987 3077 0.615331 AGAGATGTTGTGATGCCCGT 59.385 50.000 0.00 0.00 0.00 5.28
2988 3078 2.602257 TAGAGATGTTGTGATGCCCG 57.398 50.000 0.00 0.00 0.00 6.13
2989 3079 5.698545 GTCTATTAGAGATGTTGTGATGCCC 59.301 44.000 0.00 0.00 36.29 5.36
2990 3080 5.698545 GGTCTATTAGAGATGTTGTGATGCC 59.301 44.000 0.00 0.00 36.29 4.40
2991 3081 5.698545 GGGTCTATTAGAGATGTTGTGATGC 59.301 44.000 0.00 0.00 36.29 3.91
2992 3082 7.060383 AGGGTCTATTAGAGATGTTGTGATG 57.940 40.000 0.00 0.00 36.29 3.07
2993 3083 7.682787 AAGGGTCTATTAGAGATGTTGTGAT 57.317 36.000 0.00 0.00 36.29 3.06
2994 3084 7.496346 AAAGGGTCTATTAGAGATGTTGTGA 57.504 36.000 0.00 0.00 36.29 3.58
3000 3090 9.627395 CGTGTTATAAAGGGTCTATTAGAGATG 57.373 37.037 0.00 0.00 36.29 2.90
3001 3091 9.584008 TCGTGTTATAAAGGGTCTATTAGAGAT 57.416 33.333 0.00 0.00 36.29 2.75
3002 3092 8.985315 TCGTGTTATAAAGGGTCTATTAGAGA 57.015 34.615 0.00 0.00 0.00 3.10
3003 3093 9.460906 GTTCGTGTTATAAAGGGTCTATTAGAG 57.539 37.037 0.00 0.00 0.00 2.43
3004 3094 8.131100 CGTTCGTGTTATAAAGGGTCTATTAGA 58.869 37.037 0.00 0.00 0.00 2.10
3005 3095 7.096312 GCGTTCGTGTTATAAAGGGTCTATTAG 60.096 40.741 0.00 0.00 0.00 1.73
3006 3096 6.697019 GCGTTCGTGTTATAAAGGGTCTATTA 59.303 38.462 0.00 0.00 0.00 0.98
3007 3097 5.521372 GCGTTCGTGTTATAAAGGGTCTATT 59.479 40.000 0.00 0.00 0.00 1.73
3008 3098 5.045872 GCGTTCGTGTTATAAAGGGTCTAT 58.954 41.667 0.00 0.00 0.00 1.98
3009 3099 4.158394 AGCGTTCGTGTTATAAAGGGTCTA 59.842 41.667 0.00 0.00 0.00 2.59
3010 3100 3.056322 AGCGTTCGTGTTATAAAGGGTCT 60.056 43.478 0.00 0.00 0.00 3.85
3011 3101 3.256558 AGCGTTCGTGTTATAAAGGGTC 58.743 45.455 0.00 0.00 0.00 4.46
3012 3102 3.323751 AGCGTTCGTGTTATAAAGGGT 57.676 42.857 0.00 0.00 0.00 4.34
3013 3103 5.783100 TTAAGCGTTCGTGTTATAAAGGG 57.217 39.130 0.00 0.00 0.00 3.95
3014 3104 5.731263 GCTTTAAGCGTTCGTGTTATAAAGG 59.269 40.000 0.00 0.00 32.34 3.11
3015 3105 5.731263 GGCTTTAAGCGTTCGTGTTATAAAG 59.269 40.000 11.03 0.00 43.62 1.85
3016 3106 5.620467 GGCTTTAAGCGTTCGTGTTATAAA 58.380 37.500 11.03 0.00 43.62 1.40
3017 3107 4.201608 CGGCTTTAAGCGTTCGTGTTATAA 60.202 41.667 11.03 0.00 43.62 0.98
3018 3108 3.304026 CGGCTTTAAGCGTTCGTGTTATA 59.696 43.478 11.03 0.00 43.62 0.98
3019 3109 2.093152 CGGCTTTAAGCGTTCGTGTTAT 59.907 45.455 11.03 0.00 43.62 1.89
3020 3110 1.456544 CGGCTTTAAGCGTTCGTGTTA 59.543 47.619 11.03 0.00 43.62 2.41
3021 3111 0.233848 CGGCTTTAAGCGTTCGTGTT 59.766 50.000 11.03 0.00 43.62 3.32
3022 3112 0.877213 ACGGCTTTAAGCGTTCGTGT 60.877 50.000 16.27 4.03 43.62 4.49
3023 3113 0.233848 AACGGCTTTAAGCGTTCGTG 59.766 50.000 17.33 4.13 43.62 4.35
3024 3114 1.782044 TAACGGCTTTAAGCGTTCGT 58.218 45.000 22.48 17.94 43.62 3.85
3025 3115 4.502558 CTTATAACGGCTTTAAGCGTTCG 58.497 43.478 22.48 17.41 43.62 3.95
3026 3116 4.567959 TCCTTATAACGGCTTTAAGCGTTC 59.432 41.667 22.48 6.14 43.62 3.95
3027 3117 4.330894 GTCCTTATAACGGCTTTAAGCGTT 59.669 41.667 22.46 22.46 43.62 4.84
3028 3118 3.867493 GTCCTTATAACGGCTTTAAGCGT 59.133 43.478 11.03 9.42 43.62 5.07
3029 3119 3.246936 GGTCCTTATAACGGCTTTAAGCG 59.753 47.826 11.03 8.80 43.62 4.68
3030 3120 3.246936 CGGTCCTTATAACGGCTTTAAGC 59.753 47.826 8.66 8.66 41.46 3.09
3031 3121 4.685924 TCGGTCCTTATAACGGCTTTAAG 58.314 43.478 0.00 0.00 0.00 1.85
3032 3122 4.402155 TCTCGGTCCTTATAACGGCTTTAA 59.598 41.667 0.00 0.00 0.00 1.52
3033 3123 3.953612 TCTCGGTCCTTATAACGGCTTTA 59.046 43.478 0.00 0.00 0.00 1.85
3034 3124 2.762327 TCTCGGTCCTTATAACGGCTTT 59.238 45.455 0.00 0.00 0.00 3.51
3035 3125 2.381911 TCTCGGTCCTTATAACGGCTT 58.618 47.619 0.00 0.00 0.00 4.35
3036 3126 2.062971 TCTCGGTCCTTATAACGGCT 57.937 50.000 0.00 0.00 0.00 5.52
3037 3127 2.877043 TTCTCGGTCCTTATAACGGC 57.123 50.000 0.00 0.00 0.00 5.68
3038 3128 4.032104 CGTTTTTCTCGGTCCTTATAACGG 59.968 45.833 0.00 0.00 34.08 4.44
3039 3129 4.622740 ACGTTTTTCTCGGTCCTTATAACG 59.377 41.667 0.00 0.00 40.91 3.18
3040 3130 7.761651 ATACGTTTTTCTCGGTCCTTATAAC 57.238 36.000 0.00 0.00 0.00 1.89
3041 3131 8.776376 AAATACGTTTTTCTCGGTCCTTATAA 57.224 30.769 0.00 0.00 0.00 0.98
3042 3132 8.776376 AAAATACGTTTTTCTCGGTCCTTATA 57.224 30.769 4.42 0.00 33.89 0.98
3043 3133 7.677454 AAAATACGTTTTTCTCGGTCCTTAT 57.323 32.000 4.42 0.00 33.89 1.73
3044 3134 8.600449 TTAAAATACGTTTTTCTCGGTCCTTA 57.400 30.769 4.42 0.00 38.44 2.69
3045 3135 7.308169 CCTTAAAATACGTTTTTCTCGGTCCTT 60.308 37.037 4.42 0.00 38.44 3.36
3046 3136 6.148315 CCTTAAAATACGTTTTTCTCGGTCCT 59.852 38.462 4.42 0.00 38.44 3.85
3047 3137 6.147656 TCCTTAAAATACGTTTTTCTCGGTCC 59.852 38.462 4.42 0.00 38.44 4.46
3048 3138 7.011773 GTCCTTAAAATACGTTTTTCTCGGTC 58.988 38.462 4.42 1.02 38.44 4.79
3049 3139 6.073058 GGTCCTTAAAATACGTTTTTCTCGGT 60.073 38.462 4.42 0.00 38.44 4.69
3050 3140 6.309436 GGTCCTTAAAATACGTTTTTCTCGG 58.691 40.000 4.42 5.73 38.44 4.63
3051 3141 6.011277 CGGTCCTTAAAATACGTTTTTCTCG 58.989 40.000 4.42 0.00 38.44 4.04
3052 3142 7.120789 TCGGTCCTTAAAATACGTTTTTCTC 57.879 36.000 4.42 0.00 38.44 2.87
3053 3143 7.677454 ATCGGTCCTTAAAATACGTTTTTCT 57.323 32.000 4.42 0.00 38.44 2.52
3054 3144 8.732413 AAATCGGTCCTTAAAATACGTTTTTC 57.268 30.769 4.42 0.00 38.44 2.29
3055 3145 9.830294 CTAAATCGGTCCTTAAAATACGTTTTT 57.170 29.630 0.00 3.53 38.44 1.94
3056 3146 7.964559 GCTAAATCGGTCCTTAAAATACGTTTT 59.035 33.333 0.00 0.00 40.48 2.43
3057 3147 7.335171 AGCTAAATCGGTCCTTAAAATACGTTT 59.665 33.333 0.00 0.00 0.00 3.60
3058 3148 6.820152 AGCTAAATCGGTCCTTAAAATACGTT 59.180 34.615 0.00 0.00 0.00 3.99
3059 3149 6.257193 CAGCTAAATCGGTCCTTAAAATACGT 59.743 38.462 0.00 0.00 0.00 3.57
3060 3150 6.646636 CAGCTAAATCGGTCCTTAAAATACG 58.353 40.000 0.00 0.00 0.00 3.06
3061 3151 6.037830 TGCAGCTAAATCGGTCCTTAAAATAC 59.962 38.462 0.00 0.00 0.00 1.89
3062 3152 6.116806 TGCAGCTAAATCGGTCCTTAAAATA 58.883 36.000 0.00 0.00 0.00 1.40
3063 3153 4.947388 TGCAGCTAAATCGGTCCTTAAAAT 59.053 37.500 0.00 0.00 0.00 1.82
3064 3154 4.328536 TGCAGCTAAATCGGTCCTTAAAA 58.671 39.130 0.00 0.00 0.00 1.52
3065 3155 3.938963 CTGCAGCTAAATCGGTCCTTAAA 59.061 43.478 0.00 0.00 0.00 1.52
3066 3156 3.055385 ACTGCAGCTAAATCGGTCCTTAA 60.055 43.478 15.27 0.00 0.00 1.85
3067 3157 2.500098 ACTGCAGCTAAATCGGTCCTTA 59.500 45.455 15.27 0.00 0.00 2.69
3068 3158 1.279271 ACTGCAGCTAAATCGGTCCTT 59.721 47.619 15.27 0.00 0.00 3.36
3069 3159 0.905357 ACTGCAGCTAAATCGGTCCT 59.095 50.000 15.27 0.00 0.00 3.85
3070 3160 1.291132 GACTGCAGCTAAATCGGTCC 58.709 55.000 15.27 0.00 31.68 4.46
3071 3161 0.924090 CGACTGCAGCTAAATCGGTC 59.076 55.000 15.27 0.00 33.87 4.79
3072 3162 0.530744 TCGACTGCAGCTAAATCGGT 59.469 50.000 15.27 0.00 33.66 4.69
3073 3163 1.324736 GTTCGACTGCAGCTAAATCGG 59.675 52.381 15.27 0.64 33.66 4.18
3074 3164 1.992667 TGTTCGACTGCAGCTAAATCG 59.007 47.619 15.27 15.33 0.00 3.34
3075 3165 3.254060 TCTGTTCGACTGCAGCTAAATC 58.746 45.455 15.27 1.97 33.09 2.17
3076 3166 3.319137 TCTGTTCGACTGCAGCTAAAT 57.681 42.857 15.27 0.00 33.09 1.40
3077 3167 2.812358 TCTGTTCGACTGCAGCTAAA 57.188 45.000 15.27 2.06 33.09 1.85
3078 3168 2.417379 GGATCTGTTCGACTGCAGCTAA 60.417 50.000 15.27 2.44 33.09 3.09
3079 3169 1.135139 GGATCTGTTCGACTGCAGCTA 59.865 52.381 15.27 0.00 33.09 3.32
3080 3170 0.108424 GGATCTGTTCGACTGCAGCT 60.108 55.000 15.27 0.23 33.09 4.24
3081 3171 0.108424 AGGATCTGTTCGACTGCAGC 60.108 55.000 15.27 5.81 33.09 5.25
3082 3172 1.796982 CGAGGATCTGTTCGACTGCAG 60.797 57.143 13.48 13.48 39.06 4.41
3083 3173 0.171231 CGAGGATCTGTTCGACTGCA 59.829 55.000 8.46 0.00 39.06 4.41
3084 3174 0.171455 ACGAGGATCTGTTCGACTGC 59.829 55.000 17.32 0.00 39.93 4.40
3085 3175 3.972950 ATACGAGGATCTGTTCGACTG 57.027 47.619 17.32 0.00 39.93 3.51
3086 3176 5.763698 TGATTATACGAGGATCTGTTCGACT 59.236 40.000 17.32 9.08 39.93 4.18
3087 3177 5.998553 TGATTATACGAGGATCTGTTCGAC 58.001 41.667 17.32 0.00 39.93 4.20
3088 3178 6.436261 GTTGATTATACGAGGATCTGTTCGA 58.564 40.000 17.32 0.00 39.93 3.71
3089 3179 5.629849 GGTTGATTATACGAGGATCTGTTCG 59.370 44.000 11.41 11.41 42.26 3.95
3090 3180 6.642950 CAGGTTGATTATACGAGGATCTGTTC 59.357 42.308 0.00 0.00 0.00 3.18
3091 3181 6.098409 ACAGGTTGATTATACGAGGATCTGTT 59.902 38.462 0.00 0.00 0.00 3.16
3092 3182 5.598830 ACAGGTTGATTATACGAGGATCTGT 59.401 40.000 0.00 0.00 0.00 3.41
3093 3183 6.090483 ACAGGTTGATTATACGAGGATCTG 57.910 41.667 0.00 0.00 0.00 2.90
3094 3184 7.834881 TTACAGGTTGATTATACGAGGATCT 57.165 36.000 0.00 0.00 0.00 2.75
3095 3185 8.882415 TTTTACAGGTTGATTATACGAGGATC 57.118 34.615 0.00 0.00 0.00 3.36
3123 3213 9.384764 GGTGGCAGGTATATTTAGAGAATATTC 57.615 37.037 7.41 7.41 0.00 1.75
3124 3214 9.117223 AGGTGGCAGGTATATTTAGAGAATATT 57.883 33.333 0.00 0.00 0.00 1.28
3125 3215 8.686739 AGGTGGCAGGTATATTTAGAGAATAT 57.313 34.615 0.00 0.00 0.00 1.28
3126 3216 7.093902 CGAGGTGGCAGGTATATTTAGAGAATA 60.094 40.741 0.00 0.00 0.00 1.75
3127 3217 6.295349 CGAGGTGGCAGGTATATTTAGAGAAT 60.295 42.308 0.00 0.00 0.00 2.40
3128 3218 5.010719 CGAGGTGGCAGGTATATTTAGAGAA 59.989 44.000 0.00 0.00 0.00 2.87
3129 3219 4.523173 CGAGGTGGCAGGTATATTTAGAGA 59.477 45.833 0.00 0.00 0.00 3.10
3130 3220 4.810790 CGAGGTGGCAGGTATATTTAGAG 58.189 47.826 0.00 0.00 0.00 2.43
3131 3221 3.006537 GCGAGGTGGCAGGTATATTTAGA 59.993 47.826 0.00 0.00 0.00 2.10
3132 3222 3.326747 GCGAGGTGGCAGGTATATTTAG 58.673 50.000 0.00 0.00 0.00 1.85
3133 3223 2.038033 GGCGAGGTGGCAGGTATATTTA 59.962 50.000 0.00 0.00 44.08 1.40
3134 3224 1.202770 GGCGAGGTGGCAGGTATATTT 60.203 52.381 0.00 0.00 44.08 1.40
3135 3225 0.396811 GGCGAGGTGGCAGGTATATT 59.603 55.000 0.00 0.00 44.08 1.28
3136 3226 2.058675 GGCGAGGTGGCAGGTATAT 58.941 57.895 0.00 0.00 44.08 0.86
3137 3227 3.546009 GGCGAGGTGGCAGGTATA 58.454 61.111 0.00 0.00 44.08 1.47
3144 3234 4.821589 CGAGGAAGGCGAGGTGGC 62.822 72.222 0.00 0.00 45.27 5.01
3145 3235 3.068691 TCGAGGAAGGCGAGGTGG 61.069 66.667 0.00 0.00 33.33 4.61
3146 3236 2.182030 GTCGAGGAAGGCGAGGTG 59.818 66.667 0.00 0.00 38.59 4.00
3147 3237 3.441290 CGTCGAGGAAGGCGAGGT 61.441 66.667 0.00 0.00 42.53 3.85
3148 3238 4.856607 GCGTCGAGGAAGGCGAGG 62.857 72.222 9.75 0.00 42.53 4.63
3149 3239 4.116328 TGCGTCGAGGAAGGCGAG 62.116 66.667 9.75 0.00 42.53 5.03
3150 3240 4.415332 GTGCGTCGAGGAAGGCGA 62.415 66.667 9.75 0.00 42.53 5.54
3154 3244 4.717629 TGCGGTGCGTCGAGGAAG 62.718 66.667 9.75 0.00 0.00 3.46
3172 3262 4.506255 GAGGATTGGTGGCGGGGG 62.506 72.222 0.00 0.00 0.00 5.40
3173 3263 4.506255 GGAGGATTGGTGGCGGGG 62.506 72.222 0.00 0.00 0.00 5.73
3174 3264 4.506255 GGGAGGATTGGTGGCGGG 62.506 72.222 0.00 0.00 0.00 6.13
3175 3265 2.983879 AAGGGAGGATTGGTGGCGG 61.984 63.158 0.00 0.00 0.00 6.13
3176 3266 1.750399 CAAGGGAGGATTGGTGGCG 60.750 63.158 0.00 0.00 0.00 5.69
3177 3267 0.259938 ATCAAGGGAGGATTGGTGGC 59.740 55.000 0.00 0.00 0.00 5.01
3178 3268 2.025863 GCATCAAGGGAGGATTGGTGG 61.026 57.143 1.55 0.00 38.85 4.61
3179 3269 1.396653 GCATCAAGGGAGGATTGGTG 58.603 55.000 0.00 0.00 40.91 4.17
3180 3270 0.107017 CGCATCAAGGGAGGATTGGT 60.107 55.000 0.00 0.00 0.00 3.67
3181 3271 1.450531 GCGCATCAAGGGAGGATTGG 61.451 60.000 0.30 0.00 0.00 3.16
3182 3272 1.450531 GGCGCATCAAGGGAGGATTG 61.451 60.000 10.83 0.00 0.00 2.67
3183 3273 1.152881 GGCGCATCAAGGGAGGATT 60.153 57.895 10.83 0.00 0.00 3.01
3184 3274 2.512896 GGCGCATCAAGGGAGGAT 59.487 61.111 10.83 0.00 0.00 3.24
3185 3275 4.161295 CGGCGCATCAAGGGAGGA 62.161 66.667 10.83 0.00 0.00 3.71
3206 3296 3.775654 GAGAGAGGCACGGTGGGG 61.776 72.222 10.60 0.00 0.00 4.96
3207 3297 4.135153 CGAGAGAGGCACGGTGGG 62.135 72.222 10.60 0.00 0.00 4.61
3208 3298 3.062466 TCGAGAGAGGCACGGTGG 61.062 66.667 10.60 0.00 34.84 4.61
3209 3299 2.179517 GTCGAGAGAGGCACGGTG 59.820 66.667 3.15 3.15 43.49 4.94
3210 3300 3.432588 CGTCGAGAGAGGCACGGT 61.433 66.667 0.00 0.00 43.49 4.83
3219 3309 4.933064 GATGGGGCGCGTCGAGAG 62.933 72.222 8.43 0.00 0.00 3.20
3237 3327 1.031571 TTGGATTGACGCATGGAGGC 61.032 55.000 0.00 0.00 0.00 4.70
3238 3328 1.605710 GATTGGATTGACGCATGGAGG 59.394 52.381 0.00 0.00 0.00 4.30
3239 3329 2.032550 GTGATTGGATTGACGCATGGAG 59.967 50.000 0.00 0.00 0.00 3.86
3240 3330 2.016318 GTGATTGGATTGACGCATGGA 58.984 47.619 0.00 0.00 0.00 3.41
3241 3331 2.019249 AGTGATTGGATTGACGCATGG 58.981 47.619 0.00 0.00 0.00 3.66
3242 3332 2.421073 ACAGTGATTGGATTGACGCATG 59.579 45.455 0.00 0.00 0.00 4.06
3243 3333 2.679837 GACAGTGATTGGATTGACGCAT 59.320 45.455 0.00 0.00 0.00 4.73
3244 3334 2.076100 GACAGTGATTGGATTGACGCA 58.924 47.619 0.00 0.00 0.00 5.24
3245 3335 1.061131 CGACAGTGATTGGATTGACGC 59.939 52.381 0.00 0.00 0.00 5.19
3246 3336 1.061131 GCGACAGTGATTGGATTGACG 59.939 52.381 0.00 0.00 33.23 4.35
3247 3337 1.398390 GGCGACAGTGATTGGATTGAC 59.602 52.381 0.00 0.00 0.00 3.18
3248 3338 1.678728 GGGCGACAGTGATTGGATTGA 60.679 52.381 0.00 0.00 0.00 2.57
3249 3339 0.734889 GGGCGACAGTGATTGGATTG 59.265 55.000 0.00 0.00 0.00 2.67
3250 3340 0.394352 GGGGCGACAGTGATTGGATT 60.394 55.000 0.00 0.00 0.00 3.01
3251 3341 1.224592 GGGGCGACAGTGATTGGAT 59.775 57.895 0.00 0.00 0.00 3.41
3252 3342 1.488705 AAGGGGCGACAGTGATTGGA 61.489 55.000 0.00 0.00 0.00 3.53
3253 3343 1.002134 AAGGGGCGACAGTGATTGG 60.002 57.895 0.00 0.00 0.00 3.16
3254 3344 0.036010 AGAAGGGGCGACAGTGATTG 60.036 55.000 0.00 0.00 0.00 2.67
3255 3345 0.036010 CAGAAGGGGCGACAGTGATT 60.036 55.000 0.00 0.00 0.00 2.57
3256 3346 1.599047 CAGAAGGGGCGACAGTGAT 59.401 57.895 0.00 0.00 0.00 3.06
3257 3347 3.059982 CAGAAGGGGCGACAGTGA 58.940 61.111 0.00 0.00 0.00 3.41
3258 3348 2.743928 GCAGAAGGGGCGACAGTG 60.744 66.667 0.00 0.00 0.00 3.66
3259 3349 4.021925 GGCAGAAGGGGCGACAGT 62.022 66.667 0.00 0.00 0.00 3.55
3260 3350 4.785453 GGGCAGAAGGGGCGACAG 62.785 72.222 0.00 0.00 0.00 3.51
3277 3367 4.452733 GAGAACCCCAGTCCGGCG 62.453 72.222 0.00 0.00 0.00 6.46
3278 3368 4.097361 GGAGAACCCCAGTCCGGC 62.097 72.222 0.00 0.00 0.00 6.13
3279 3369 2.606519 TGGAGAACCCCAGTCCGG 60.607 66.667 0.00 0.00 32.51 5.14
3280 3370 2.663196 GTGGAGAACCCCAGTCCG 59.337 66.667 0.00 0.00 36.78 4.79
3281 3371 3.078817 GGTGGAGAACCCCAGTCC 58.921 66.667 0.00 0.00 44.02 3.85
3310 3400 2.433838 CTCTGCTGGTGGTGCGAG 60.434 66.667 0.00 0.00 0.00 5.03
3311 3401 4.687215 GCTCTGCTGGTGGTGCGA 62.687 66.667 0.00 0.00 0.00 5.10
3313 3403 4.648626 TGGCTCTGCTGGTGGTGC 62.649 66.667 0.00 0.00 0.00 5.01
3314 3404 2.670934 GTGGCTCTGCTGGTGGTG 60.671 66.667 0.00 0.00 0.00 4.17
3315 3405 3.958860 GGTGGCTCTGCTGGTGGT 61.959 66.667 0.00 0.00 0.00 4.16
3333 3423 4.133796 GGGCTGATTGCGGTTGGC 62.134 66.667 0.00 0.00 44.05 4.52
3334 3424 3.451894 GGGGCTGATTGCGGTTGG 61.452 66.667 0.00 0.00 44.05 3.77
3335 3425 3.814268 CGGGGCTGATTGCGGTTG 61.814 66.667 0.00 0.00 44.05 3.77
3341 3431 3.508840 GAACCGCGGGGCTGATTG 61.509 66.667 31.76 0.00 36.48 2.67
3342 3432 4.028490 TGAACCGCGGGGCTGATT 62.028 61.111 31.76 13.76 36.48 2.57
3343 3433 4.778143 GTGAACCGCGGGGCTGAT 62.778 66.667 31.76 3.35 36.48 2.90
3354 3444 1.405661 GGAAGAGGATCACGGTGAACC 60.406 57.143 25.08 25.08 39.36 3.62
3355 3445 1.736032 CGGAAGAGGATCACGGTGAAC 60.736 57.143 15.72 12.46 37.82 3.18
3356 3446 0.530744 CGGAAGAGGATCACGGTGAA 59.469 55.000 15.72 0.00 37.82 3.18
3357 3447 1.945354 GCGGAAGAGGATCACGGTGA 61.945 60.000 14.01 14.01 37.82 4.02
3358 3448 1.519455 GCGGAAGAGGATCACGGTG 60.519 63.158 0.56 0.56 37.82 4.94
3359 3449 1.982395 TGCGGAAGAGGATCACGGT 60.982 57.895 0.00 0.00 37.82 4.83
3360 3450 1.519455 GTGCGGAAGAGGATCACGG 60.519 63.158 0.00 0.00 37.82 4.94
3361 3451 1.874019 CGTGCGGAAGAGGATCACG 60.874 63.158 0.00 0.00 43.19 4.35
3362 3452 1.519455 CCGTGCGGAAGAGGATCAC 60.519 63.158 4.35 0.00 35.42 3.06
3363 3453 2.721167 CCCGTGCGGAAGAGGATCA 61.721 63.158 12.71 0.00 35.42 2.92
3364 3454 2.107141 CCCGTGCGGAAGAGGATC 59.893 66.667 12.71 0.00 37.50 3.36
3365 3455 4.162690 GCCCGTGCGGAAGAGGAT 62.163 66.667 12.71 0.00 37.50 3.24
3375 3465 4.740822 AGATGTTGGGGCCCGTGC 62.741 66.667 19.83 11.02 0.00 5.34
3376 3466 2.438434 GAGATGTTGGGGCCCGTG 60.438 66.667 19.83 0.00 0.00 4.94
3377 3467 3.728373 GGAGATGTTGGGGCCCGT 61.728 66.667 19.83 3.32 0.00 5.28
3378 3468 3.727258 TGGAGATGTTGGGGCCCG 61.727 66.667 19.83 0.00 0.00 6.13
3379 3469 2.043953 GTGGAGATGTTGGGGCCC 60.044 66.667 18.17 18.17 0.00 5.80
3380 3470 2.438434 CGTGGAGATGTTGGGGCC 60.438 66.667 0.00 0.00 0.00 5.80
3381 3471 3.134127 GCGTGGAGATGTTGGGGC 61.134 66.667 0.00 0.00 0.00 5.80
3382 3472 2.438434 GGCGTGGAGATGTTGGGG 60.438 66.667 0.00 0.00 0.00 4.96
3383 3473 1.303236 TTGGCGTGGAGATGTTGGG 60.303 57.895 0.00 0.00 0.00 4.12
3384 3474 0.606401 AGTTGGCGTGGAGATGTTGG 60.606 55.000 0.00 0.00 0.00 3.77
3385 3475 0.518636 CAGTTGGCGTGGAGATGTTG 59.481 55.000 0.00 0.00 0.00 3.33
3386 3476 0.108585 ACAGTTGGCGTGGAGATGTT 59.891 50.000 0.00 0.00 0.00 2.71
3387 3477 0.320771 GACAGTTGGCGTGGAGATGT 60.321 55.000 0.00 0.00 0.00 3.06
3388 3478 0.320683 TGACAGTTGGCGTGGAGATG 60.321 55.000 0.00 0.00 0.00 2.90
3389 3479 0.320771 GTGACAGTTGGCGTGGAGAT 60.321 55.000 0.00 0.00 0.00 2.75
3390 3480 1.069090 GTGACAGTTGGCGTGGAGA 59.931 57.895 0.00 0.00 0.00 3.71
3391 3481 2.310233 CGTGACAGTTGGCGTGGAG 61.310 63.158 0.00 0.00 0.00 3.86
3392 3482 2.279851 CGTGACAGTTGGCGTGGA 60.280 61.111 0.00 0.00 0.00 4.02
3393 3483 3.345808 CCGTGACAGTTGGCGTGG 61.346 66.667 0.00 0.00 0.00 4.94
3394 3484 2.279851 TCCGTGACAGTTGGCGTG 60.280 61.111 0.00 0.00 0.00 5.34
3395 3485 1.816863 ATCTCCGTGACAGTTGGCGT 61.817 55.000 0.00 0.00 0.00 5.68
3396 3486 0.670546 AATCTCCGTGACAGTTGGCG 60.671 55.000 0.00 0.00 0.00 5.69
3397 3487 0.798776 CAATCTCCGTGACAGTTGGC 59.201 55.000 0.00 0.00 0.00 4.52
3398 3488 2.069273 GTCAATCTCCGTGACAGTTGG 58.931 52.381 0.00 0.00 44.00 3.77
3399 3489 1.721389 CGTCAATCTCCGTGACAGTTG 59.279 52.381 5.50 0.00 44.66 3.16
3400 3490 1.935300 GCGTCAATCTCCGTGACAGTT 60.935 52.381 5.50 0.00 44.66 3.16
3401 3491 0.388649 GCGTCAATCTCCGTGACAGT 60.389 55.000 5.50 0.00 44.66 3.55
3402 3492 0.109086 AGCGTCAATCTCCGTGACAG 60.109 55.000 5.50 0.18 44.66 3.51
3403 3493 0.109272 GAGCGTCAATCTCCGTGACA 60.109 55.000 5.50 0.00 44.66 3.58
3404 3494 0.171455 AGAGCGTCAATCTCCGTGAC 59.829 55.000 0.00 0.00 41.66 3.67
3405 3495 0.452184 GAGAGCGTCAATCTCCGTGA 59.548 55.000 0.00 0.00 37.77 4.35
3406 3496 0.863538 CGAGAGCGTCAATCTCCGTG 60.864 60.000 0.00 0.00 40.11 4.94
3407 3497 1.429825 CGAGAGCGTCAATCTCCGT 59.570 57.895 0.00 0.00 40.11 4.69
3408 3498 4.293694 CGAGAGCGTCAATCTCCG 57.706 61.111 0.00 0.00 40.11 4.63
3425 3515 4.477975 CGAGTGGAGACCGGCGAC 62.478 72.222 9.30 1.53 0.00 5.19
3444 3534 4.452733 GAGAGGTTGTCGGGGGCG 62.453 72.222 0.00 0.00 0.00 6.13
3445 3535 3.003763 AGAGAGGTTGTCGGGGGC 61.004 66.667 0.00 0.00 0.00 5.80
3446 3536 1.889530 GACAGAGAGGTTGTCGGGGG 61.890 65.000 0.00 0.00 36.01 5.40
3447 3537 1.592223 GACAGAGAGGTTGTCGGGG 59.408 63.158 0.00 0.00 36.01 5.73
3451 3541 3.161866 AGGAGAAGACAGAGAGGTTGTC 58.838 50.000 0.00 0.00 44.09 3.18
3452 3542 3.161866 GAGGAGAAGACAGAGAGGTTGT 58.838 50.000 0.00 0.00 0.00 3.32
3453 3543 2.495669 GGAGGAGAAGACAGAGAGGTTG 59.504 54.545 0.00 0.00 0.00 3.77
3454 3544 2.815158 GGAGGAGAAGACAGAGAGGTT 58.185 52.381 0.00 0.00 0.00 3.50
3455 3545 2.525105 GGAGGAGAAGACAGAGAGGT 57.475 55.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.