Multiple sequence alignment - TraesCS2A01G356000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G356000 chr2A 100.000 2624 0 0 1525 4148 599167672 599165049 0.000000e+00 4846.0
1 TraesCS2A01G356000 chr2A 100.000 1213 0 0 1 1213 599169196 599167984 0.000000e+00 2241.0
2 TraesCS2A01G356000 chr2A 93.763 497 31 0 66 562 146971704 146971208 0.000000e+00 747.0
3 TraesCS2A01G356000 chr2B 94.514 2643 113 9 1525 4148 530411391 530414020 0.000000e+00 4048.0
4 TraesCS2A01G356000 chr2B 93.909 394 15 5 828 1213 530410993 530411385 1.660000e-163 586.0
5 TraesCS2A01G356000 chr2B 93.214 280 19 0 559 838 659787503 659787224 2.980000e-111 412.0
6 TraesCS2A01G356000 chr2D 94.251 2644 111 15 1525 4148 450370763 450373385 0.000000e+00 4002.0
7 TraesCS2A01G356000 chr2D 94.359 390 10 6 828 1213 450370376 450370757 4.620000e-164 588.0
8 TraesCS2A01G356000 chr2D 83.009 565 83 12 1 559 352249244 352249801 2.230000e-137 499.0
9 TraesCS2A01G356000 chr6A 91.919 495 38 2 66 559 198176956 198176463 0.000000e+00 691.0
10 TraesCS2A01G356000 chr6A 90.000 490 41 6 69 553 118421704 118422190 9.790000e-176 627.0
11 TraesCS2A01G356000 chr6A 87.968 507 50 7 63 559 512314186 512314691 4.620000e-164 588.0
12 TraesCS2A01G356000 chr7D 87.525 497 60 2 64 559 305969843 305970338 1.290000e-159 573.0
13 TraesCS2A01G356000 chr7D 83.130 575 74 20 1 559 550006921 550007488 1.720000e-138 503.0
14 TraesCS2A01G356000 chr7D 93.796 274 17 0 559 832 579996125 579995852 2.980000e-111 412.0
15 TraesCS2A01G356000 chr4A 86.588 507 57 8 63 560 328231080 328231584 2.180000e-152 549.0
16 TraesCS2A01G356000 chr4A 94.161 274 16 0 559 832 675795192 675794919 6.410000e-113 418.0
17 TraesCS2A01G356000 chr6D 86.427 501 66 2 59 559 193684245 193684743 7.840000e-152 547.0
18 TraesCS2A01G356000 chr6D 93.431 274 18 0 559 832 409333639 409333366 1.390000e-109 407.0
19 TraesCS2A01G356000 chr6D 78.781 443 61 20 1 413 125955783 125956222 2.460000e-67 267.0
20 TraesCS2A01G356000 chrUn 94.161 274 16 0 559 832 361775933 361775660 6.410000e-113 418.0
21 TraesCS2A01G356000 chrUn 93.796 274 17 0 559 832 301227504 301227777 2.980000e-111 412.0
22 TraesCS2A01G356000 chr5B 94.161 274 16 0 559 832 325799095 325799368 6.410000e-113 418.0
23 TraesCS2A01G356000 chr4B 94.161 274 16 0 559 832 117098056 117097783 6.410000e-113 418.0
24 TraesCS2A01G356000 chr5D 80.203 591 80 25 1 559 229736736 229737321 3.860000e-110 409.0
25 TraesCS2A01G356000 chr5D 93.066 274 19 0 559 832 35660577 35660850 6.460000e-108 401.0
26 TraesCS2A01G356000 chr5D 78.173 591 92 23 1 559 182284566 182283981 3.970000e-90 342.0
27 TraesCS2A01G356000 chr3D 77.647 595 90 26 1 559 210400887 210400300 5.170000e-84 322.0
28 TraesCS2A01G356000 chr7A 93.000 100 6 1 1 100 569323209 569323111 1.200000e-30 145.0
29 TraesCS2A01G356000 chr7A 82.609 92 15 1 9 100 370374454 370374544 3.440000e-11 80.5
30 TraesCS2A01G356000 chr4D 83.168 101 14 2 1 98 212500456 212500356 5.710000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G356000 chr2A 599165049 599169196 4147 True 3543.5 4846 100.0000 1 4148 2 chr2A.!!$R2 4147
1 TraesCS2A01G356000 chr2B 530410993 530414020 3027 False 2317.0 4048 94.2115 828 4148 2 chr2B.!!$F1 3320
2 TraesCS2A01G356000 chr2D 450370376 450373385 3009 False 2295.0 4002 94.3050 828 4148 2 chr2D.!!$F2 3320
3 TraesCS2A01G356000 chr2D 352249244 352249801 557 False 499.0 499 83.0090 1 559 1 chr2D.!!$F1 558
4 TraesCS2A01G356000 chr6A 512314186 512314691 505 False 588.0 588 87.9680 63 559 1 chr6A.!!$F2 496
5 TraesCS2A01G356000 chr7D 550006921 550007488 567 False 503.0 503 83.1300 1 559 1 chr7D.!!$F2 558
6 TraesCS2A01G356000 chr4A 328231080 328231584 504 False 549.0 549 86.5880 63 560 1 chr4A.!!$F1 497
7 TraesCS2A01G356000 chr5D 229736736 229737321 585 False 409.0 409 80.2030 1 559 1 chr5D.!!$F2 558
8 TraesCS2A01G356000 chr5D 182283981 182284566 585 True 342.0 342 78.1730 1 559 1 chr5D.!!$R1 558
9 TraesCS2A01G356000 chr3D 210400300 210400887 587 True 322.0 322 77.6470 1 559 1 chr3D.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 873 0.036010 AGTTTGATGACGCCCTCAGG 60.036 55.000 0.0 0.0 30.20 3.86 F
807 895 0.251341 GCTGGGACCAACCATGTCTT 60.251 55.000 0.0 0.0 40.36 3.01 F
927 1015 0.529833 CAGTCCATCTCGCACAGAGT 59.470 55.000 0.0 0.0 46.86 3.24 F
928 1016 0.529833 AGTCCATCTCGCACAGAGTG 59.470 55.000 0.0 0.0 46.86 3.51 F
942 1030 1.227383 GAGTGGCGATGGGGGAAAT 59.773 57.895 0.0 0.0 0.00 2.17 F
2931 3032 0.532115 AATCGCAAATGGGCACTTCC 59.468 50.000 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2361 2462 0.257039 GAATGACCCTGCCATCCTGT 59.743 55.000 0.00 0.0 0.00 4.00 R
2529 2630 0.394352 CCTTGGTGTATGGGTGGAGC 60.394 60.000 0.00 0.0 0.00 4.70 R
2730 2831 1.070758 GCTTCCACCTCTTCACTGACA 59.929 52.381 0.00 0.0 0.00 3.58 R
2825 2926 7.890127 TCTTGACCAGTTTCTCCATTTTATCAT 59.110 33.333 0.00 0.0 0.00 2.45 R
2934 3035 3.817084 GCTCCTGCTGCATAATCATTGTA 59.183 43.478 1.31 0.0 36.03 2.41 R
3885 4018 0.257039 ATTCTTGAAGGCTCCCGCAT 59.743 50.000 0.00 0.0 38.10 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 2.356741 GCTAAAGGGTACATGGGCTTCA 60.357 50.000 0.00 0.00 0.00 3.02
131 189 2.627699 CTCTTCTGTCCTCTGGATAGGC 59.372 54.545 9.84 0.00 40.62 3.93
379 467 2.364647 GGGTCCTCTTGGTACCTAATCG 59.635 54.545 14.36 0.00 35.36 3.34
419 507 3.231207 AGGTAGTAGCCATGTCTCGAT 57.769 47.619 0.00 0.00 0.00 3.59
502 590 2.656002 CTCGAGTCATGGGTCCTCTTA 58.344 52.381 3.62 0.00 0.00 2.10
534 622 2.158310 AGACGATGATAGGTCCATGGGA 60.158 50.000 13.02 0.00 33.66 4.37
548 636 5.540688 GTCCATGGGAATGACCGTAGGATA 61.541 50.000 13.02 0.00 42.80 2.59
565 653 3.393800 GGATACTCCACATCACAATCCG 58.606 50.000 0.00 0.00 36.28 4.18
566 654 2.309528 TACTCCACATCACAATCCGC 57.690 50.000 0.00 0.00 0.00 5.54
567 655 0.615331 ACTCCACATCACAATCCGCT 59.385 50.000 0.00 0.00 0.00 5.52
568 656 1.003580 ACTCCACATCACAATCCGCTT 59.996 47.619 0.00 0.00 0.00 4.68
569 657 2.086869 CTCCACATCACAATCCGCTTT 58.913 47.619 0.00 0.00 0.00 3.51
570 658 1.811965 TCCACATCACAATCCGCTTTG 59.188 47.619 0.00 0.00 0.00 2.77
571 659 1.811965 CCACATCACAATCCGCTTTGA 59.188 47.619 2.98 0.00 0.00 2.69
572 660 2.414559 CCACATCACAATCCGCTTTGAC 60.415 50.000 2.98 0.00 0.00 3.18
573 661 2.226200 CACATCACAATCCGCTTTGACA 59.774 45.455 2.98 0.00 0.00 3.58
574 662 3.084039 ACATCACAATCCGCTTTGACAT 58.916 40.909 2.98 0.00 0.00 3.06
575 663 4.094739 CACATCACAATCCGCTTTGACATA 59.905 41.667 2.98 0.00 0.00 2.29
576 664 4.333649 ACATCACAATCCGCTTTGACATAG 59.666 41.667 2.98 0.00 0.00 2.23
577 665 4.200838 TCACAATCCGCTTTGACATAGA 57.799 40.909 0.00 0.00 0.00 1.98
578 666 4.769688 TCACAATCCGCTTTGACATAGAT 58.230 39.130 0.00 0.00 0.00 1.98
579 667 5.185454 TCACAATCCGCTTTGACATAGATT 58.815 37.500 0.00 0.00 0.00 2.40
580 668 5.647658 TCACAATCCGCTTTGACATAGATTT 59.352 36.000 0.00 0.00 0.00 2.17
581 669 6.150976 TCACAATCCGCTTTGACATAGATTTT 59.849 34.615 0.00 0.00 0.00 1.82
582 670 6.252015 CACAATCCGCTTTGACATAGATTTTG 59.748 38.462 0.00 0.00 0.00 2.44
583 671 6.071952 ACAATCCGCTTTGACATAGATTTTGT 60.072 34.615 0.00 0.00 0.00 2.83
584 672 5.957842 TCCGCTTTGACATAGATTTTGTT 57.042 34.783 0.00 0.00 0.00 2.83
585 673 7.624360 ATCCGCTTTGACATAGATTTTGTTA 57.376 32.000 0.00 0.00 0.00 2.41
586 674 6.837992 TCCGCTTTGACATAGATTTTGTTAC 58.162 36.000 0.00 0.00 0.00 2.50
587 675 6.428465 TCCGCTTTGACATAGATTTTGTTACA 59.572 34.615 0.00 0.00 0.00 2.41
588 676 7.041030 TCCGCTTTGACATAGATTTTGTTACAA 60.041 33.333 0.00 0.00 0.00 2.41
589 677 7.060633 CCGCTTTGACATAGATTTTGTTACAAC 59.939 37.037 0.00 0.00 0.00 3.32
590 678 7.060633 CGCTTTGACATAGATTTTGTTACAACC 59.939 37.037 0.00 0.00 0.00 3.77
591 679 7.865385 GCTTTGACATAGATTTTGTTACAACCA 59.135 33.333 0.00 0.00 0.00 3.67
592 680 9.743057 CTTTGACATAGATTTTGTTACAACCAA 57.257 29.630 0.00 0.00 0.00 3.67
593 681 9.522804 TTTGACATAGATTTTGTTACAACCAAC 57.477 29.630 0.00 0.00 0.00 3.77
594 682 8.458573 TGACATAGATTTTGTTACAACCAACT 57.541 30.769 0.00 0.00 0.00 3.16
595 683 8.908903 TGACATAGATTTTGTTACAACCAACTT 58.091 29.630 0.00 0.00 0.00 2.66
596 684 9.394477 GACATAGATTTTGTTACAACCAACTTC 57.606 33.333 0.00 0.00 0.00 3.01
597 685 8.908903 ACATAGATTTTGTTACAACCAACTTCA 58.091 29.630 0.00 0.00 0.00 3.02
598 686 9.912634 CATAGATTTTGTTACAACCAACTTCAT 57.087 29.630 0.00 0.00 0.00 2.57
600 688 8.871686 AGATTTTGTTACAACCAACTTCATTC 57.128 30.769 0.00 0.00 0.00 2.67
601 689 7.647715 AGATTTTGTTACAACCAACTTCATTCG 59.352 33.333 0.00 0.00 0.00 3.34
602 690 4.217754 TGTTACAACCAACTTCATTCGC 57.782 40.909 0.00 0.00 0.00 4.70
603 691 3.880490 TGTTACAACCAACTTCATTCGCT 59.120 39.130 0.00 0.00 0.00 4.93
604 692 5.057819 TGTTACAACCAACTTCATTCGCTA 58.942 37.500 0.00 0.00 0.00 4.26
605 693 5.178623 TGTTACAACCAACTTCATTCGCTAG 59.821 40.000 0.00 0.00 0.00 3.42
606 694 3.740115 ACAACCAACTTCATTCGCTAGT 58.260 40.909 0.00 0.00 0.00 2.57
607 695 4.890088 ACAACCAACTTCATTCGCTAGTA 58.110 39.130 0.00 0.00 0.00 1.82
608 696 4.929808 ACAACCAACTTCATTCGCTAGTAG 59.070 41.667 0.00 0.00 0.00 2.57
609 697 4.124851 ACCAACTTCATTCGCTAGTAGG 57.875 45.455 0.00 0.00 0.00 3.18
610 698 3.767673 ACCAACTTCATTCGCTAGTAGGA 59.232 43.478 0.00 0.00 0.00 2.94
611 699 4.142138 ACCAACTTCATTCGCTAGTAGGAG 60.142 45.833 0.00 0.00 0.00 3.69
612 700 4.363999 CAACTTCATTCGCTAGTAGGAGG 58.636 47.826 0.00 0.00 0.00 4.30
613 701 2.362717 ACTTCATTCGCTAGTAGGAGGC 59.637 50.000 0.00 0.00 0.00 4.70
614 702 1.329256 TCATTCGCTAGTAGGAGGCC 58.671 55.000 0.00 0.00 0.00 5.19
615 703 1.040646 CATTCGCTAGTAGGAGGCCA 58.959 55.000 5.01 0.00 0.00 5.36
616 704 1.620819 CATTCGCTAGTAGGAGGCCAT 59.379 52.381 5.01 0.00 0.00 4.40
617 705 1.329256 TTCGCTAGTAGGAGGCCATC 58.671 55.000 5.01 0.00 0.00 3.51
618 706 0.478942 TCGCTAGTAGGAGGCCATCT 59.521 55.000 5.01 4.00 0.00 2.90
619 707 0.885196 CGCTAGTAGGAGGCCATCTC 59.115 60.000 5.01 0.00 41.71 2.75
620 708 0.885196 GCTAGTAGGAGGCCATCTCG 59.115 60.000 5.01 0.00 43.34 4.04
621 709 1.820090 GCTAGTAGGAGGCCATCTCGT 60.820 57.143 5.01 0.00 43.34 4.18
622 710 2.552591 GCTAGTAGGAGGCCATCTCGTA 60.553 54.545 5.01 0.00 43.34 3.43
623 711 2.279935 AGTAGGAGGCCATCTCGTAG 57.720 55.000 5.01 0.00 41.71 3.51
624 712 1.495574 AGTAGGAGGCCATCTCGTAGT 59.504 52.381 5.01 0.00 41.71 2.73
625 713 1.881324 GTAGGAGGCCATCTCGTAGTC 59.119 57.143 5.01 0.00 41.71 2.59
626 714 0.468400 AGGAGGCCATCTCGTAGTCC 60.468 60.000 5.01 0.00 43.34 3.85
627 715 0.468400 GGAGGCCATCTCGTAGTCCT 60.468 60.000 5.01 0.00 43.34 3.85
628 716 0.955905 GAGGCCATCTCGTAGTCCTC 59.044 60.000 5.01 0.00 34.13 3.71
629 717 0.553819 AGGCCATCTCGTAGTCCTCT 59.446 55.000 5.01 0.00 0.00 3.69
630 718 1.775459 AGGCCATCTCGTAGTCCTCTA 59.225 52.381 5.01 0.00 0.00 2.43
631 719 2.156098 GGCCATCTCGTAGTCCTCTAG 58.844 57.143 0.00 0.00 0.00 2.43
632 720 1.538075 GCCATCTCGTAGTCCTCTAGC 59.462 57.143 0.00 0.00 0.00 3.42
633 721 2.156098 CCATCTCGTAGTCCTCTAGCC 58.844 57.143 0.00 0.00 0.00 3.93
634 722 2.224670 CCATCTCGTAGTCCTCTAGCCT 60.225 54.545 0.00 0.00 0.00 4.58
635 723 2.914695 TCTCGTAGTCCTCTAGCCTC 57.085 55.000 0.00 0.00 0.00 4.70
636 724 2.400573 TCTCGTAGTCCTCTAGCCTCT 58.599 52.381 0.00 0.00 0.00 3.69
637 725 2.103432 TCTCGTAGTCCTCTAGCCTCTG 59.897 54.545 0.00 0.00 0.00 3.35
638 726 1.838715 TCGTAGTCCTCTAGCCTCTGT 59.161 52.381 0.00 0.00 0.00 3.41
639 727 2.158928 TCGTAGTCCTCTAGCCTCTGTC 60.159 54.545 0.00 0.00 0.00 3.51
640 728 2.215196 GTAGTCCTCTAGCCTCTGTCG 58.785 57.143 0.00 0.00 0.00 4.35
641 729 0.621609 AGTCCTCTAGCCTCTGTCGT 59.378 55.000 0.00 0.00 0.00 4.34
642 730 1.018910 GTCCTCTAGCCTCTGTCGTC 58.981 60.000 0.00 0.00 0.00 4.20
643 731 0.462225 TCCTCTAGCCTCTGTCGTCG 60.462 60.000 0.00 0.00 0.00 5.12
644 732 0.462225 CCTCTAGCCTCTGTCGTCGA 60.462 60.000 0.00 0.00 0.00 4.20
645 733 0.653636 CTCTAGCCTCTGTCGTCGAC 59.346 60.000 18.51 18.51 0.00 4.20
646 734 1.082679 TCTAGCCTCTGTCGTCGACG 61.083 60.000 31.30 31.30 41.45 5.12
647 735 2.634702 CTAGCCTCTGTCGTCGACGC 62.635 65.000 32.19 25.53 39.60 5.19
649 737 4.086178 CCTCTGTCGTCGACGCGT 62.086 66.667 32.19 13.85 39.60 6.01
650 738 2.571096 CTCTGTCGTCGACGCGTC 60.571 66.667 32.19 28.96 39.60 5.19
651 739 3.012936 CTCTGTCGTCGACGCGTCT 62.013 63.158 33.94 2.58 39.60 4.18
652 740 2.127345 CTGTCGTCGACGCGTCTT 60.127 61.111 33.94 1.67 39.60 3.01
653 741 2.127496 TGTCGTCGACGCGTCTTC 60.127 61.111 33.94 24.44 39.60 2.87
654 742 2.868787 GTCGTCGACGCGTCTTCC 60.869 66.667 33.94 20.65 39.60 3.46
655 743 3.348205 TCGTCGACGCGTCTTCCA 61.348 61.111 33.94 14.79 39.60 3.53
656 744 3.164011 CGTCGACGCGTCTTCCAC 61.164 66.667 33.94 22.84 0.00 4.02
657 745 2.050714 GTCGACGCGTCTTCCACA 60.051 61.111 33.94 10.26 0.00 4.17
658 746 1.659335 GTCGACGCGTCTTCCACAA 60.659 57.895 33.94 10.00 0.00 3.33
659 747 1.066093 TCGACGCGTCTTCCACAAA 59.934 52.632 33.94 8.67 0.00 2.83
660 748 0.937699 TCGACGCGTCTTCCACAAAG 60.938 55.000 33.94 16.86 36.22 2.77
661 749 1.860078 GACGCGTCTTCCACAAAGG 59.140 57.895 31.12 0.00 35.54 3.11
662 750 1.566018 GACGCGTCTTCCACAAAGGG 61.566 60.000 31.12 0.00 38.24 3.95
663 751 1.597027 CGCGTCTTCCACAAAGGGT 60.597 57.895 0.00 0.00 38.24 4.34
664 752 0.320073 CGCGTCTTCCACAAAGGGTA 60.320 55.000 0.00 0.00 38.24 3.69
665 753 1.674817 CGCGTCTTCCACAAAGGGTAT 60.675 52.381 0.00 0.00 38.24 2.73
666 754 2.417651 CGCGTCTTCCACAAAGGGTATA 60.418 50.000 0.00 0.00 38.24 1.47
667 755 3.740141 CGCGTCTTCCACAAAGGGTATAT 60.740 47.826 0.00 0.00 38.24 0.86
668 756 3.808174 GCGTCTTCCACAAAGGGTATATC 59.192 47.826 0.00 0.00 38.24 1.63
669 757 4.682320 GCGTCTTCCACAAAGGGTATATCA 60.682 45.833 0.00 0.00 38.24 2.15
670 758 4.809426 CGTCTTCCACAAAGGGTATATCAC 59.191 45.833 0.00 0.00 38.24 3.06
671 759 5.395324 CGTCTTCCACAAAGGGTATATCACT 60.395 44.000 0.00 0.00 38.24 3.41
672 760 5.817816 GTCTTCCACAAAGGGTATATCACTG 59.182 44.000 0.00 0.00 38.24 3.66
673 761 4.150897 TCCACAAAGGGTATATCACTGC 57.849 45.455 0.00 0.00 38.24 4.40
674 762 3.521531 TCCACAAAGGGTATATCACTGCA 59.478 43.478 0.00 0.00 38.24 4.41
675 763 4.018870 TCCACAAAGGGTATATCACTGCAA 60.019 41.667 0.00 0.00 38.24 4.08
676 764 4.704540 CCACAAAGGGTATATCACTGCAAA 59.295 41.667 0.00 0.00 0.00 3.68
677 765 5.184864 CCACAAAGGGTATATCACTGCAAAA 59.815 40.000 0.00 0.00 0.00 2.44
678 766 6.295011 CCACAAAGGGTATATCACTGCAAAAA 60.295 38.462 0.00 0.00 0.00 1.94
679 767 6.808212 CACAAAGGGTATATCACTGCAAAAAG 59.192 38.462 0.00 0.00 0.00 2.27
680 768 5.582689 AAGGGTATATCACTGCAAAAAGC 57.417 39.130 0.00 0.00 45.96 3.51
693 781 4.339439 GCAAAAAGCAGCAACAAAGAAA 57.661 36.364 0.00 0.00 44.79 2.52
694 782 4.090729 GCAAAAAGCAGCAACAAAGAAAC 58.909 39.130 0.00 0.00 44.79 2.78
695 783 4.650985 CAAAAAGCAGCAACAAAGAAACC 58.349 39.130 0.00 0.00 0.00 3.27
696 784 2.208326 AAGCAGCAACAAAGAAACCG 57.792 45.000 0.00 0.00 0.00 4.44
697 785 0.385390 AGCAGCAACAAAGAAACCGG 59.615 50.000 0.00 0.00 0.00 5.28
698 786 1.215014 GCAGCAACAAAGAAACCGGC 61.215 55.000 0.00 0.00 0.00 6.13
699 787 0.385390 CAGCAACAAAGAAACCGGCT 59.615 50.000 0.00 0.00 0.00 5.52
700 788 1.111277 AGCAACAAAGAAACCGGCTT 58.889 45.000 0.00 0.00 0.00 4.35
701 789 1.067060 AGCAACAAAGAAACCGGCTTC 59.933 47.619 9.67 9.67 0.00 3.86
702 790 1.202359 GCAACAAAGAAACCGGCTTCA 60.202 47.619 19.34 0.00 0.00 3.02
703 791 2.545742 GCAACAAAGAAACCGGCTTCAT 60.546 45.455 19.34 4.85 0.00 2.57
704 792 3.308530 CAACAAAGAAACCGGCTTCATC 58.691 45.455 19.34 2.62 0.00 2.92
705 793 2.582052 ACAAAGAAACCGGCTTCATCA 58.418 42.857 19.34 0.00 0.00 3.07
706 794 2.293399 ACAAAGAAACCGGCTTCATCAC 59.707 45.455 19.34 0.00 0.00 3.06
707 795 1.156736 AAGAAACCGGCTTCATCACG 58.843 50.000 19.34 0.00 0.00 4.35
708 796 1.134694 GAAACCGGCTTCATCACGC 59.865 57.895 12.74 0.00 0.00 5.34
709 797 1.573829 GAAACCGGCTTCATCACGCA 61.574 55.000 12.74 0.00 0.00 5.24
710 798 1.577328 AAACCGGCTTCATCACGCAG 61.577 55.000 0.00 0.00 0.00 5.18
711 799 3.869272 CCGGCTTCATCACGCAGC 61.869 66.667 0.00 0.00 0.00 5.25
712 800 3.120385 CGGCTTCATCACGCAGCA 61.120 61.111 0.00 0.00 35.05 4.41
713 801 2.482374 GGCTTCATCACGCAGCAC 59.518 61.111 0.00 0.00 35.05 4.40
714 802 2.037136 GGCTTCATCACGCAGCACT 61.037 57.895 0.00 0.00 35.05 4.40
715 803 1.134075 GCTTCATCACGCAGCACTG 59.866 57.895 0.00 0.00 33.45 3.66
725 813 4.606071 CAGCACTGCTCCAGTACC 57.394 61.111 0.00 0.00 43.43 3.34
726 814 1.078848 CAGCACTGCTCCAGTACCC 60.079 63.158 0.00 0.00 43.43 3.69
727 815 2.269241 GCACTGCTCCAGTACCCC 59.731 66.667 0.00 0.00 43.43 4.95
728 816 2.990479 CACTGCTCCAGTACCCCC 59.010 66.667 0.00 0.00 43.43 5.40
729 817 1.613630 CACTGCTCCAGTACCCCCT 60.614 63.158 0.00 0.00 43.43 4.79
730 818 1.613630 ACTGCTCCAGTACCCCCTG 60.614 63.158 0.00 0.00 43.46 4.45
731 819 1.613630 CTGCTCCAGTACCCCCTGT 60.614 63.158 0.00 0.00 0.00 4.00
732 820 0.325296 CTGCTCCAGTACCCCCTGTA 60.325 60.000 0.00 0.00 0.00 2.74
739 827 3.077914 GTACCCCCTGTACCAGTGT 57.922 57.895 0.00 0.00 43.41 3.55
740 828 0.900421 GTACCCCCTGTACCAGTGTC 59.100 60.000 0.00 0.00 43.41 3.67
741 829 0.252375 TACCCCCTGTACCAGTGTCC 60.252 60.000 0.00 0.00 0.00 4.02
742 830 1.229529 CCCCCTGTACCAGTGTCCT 60.230 63.158 0.00 0.00 0.00 3.85
743 831 1.553690 CCCCCTGTACCAGTGTCCTG 61.554 65.000 0.00 0.00 38.50 3.86
744 832 0.544357 CCCCTGTACCAGTGTCCTGA 60.544 60.000 0.00 0.00 41.50 3.86
745 833 1.573108 CCCTGTACCAGTGTCCTGAT 58.427 55.000 0.00 0.00 41.50 2.90
746 834 1.208052 CCCTGTACCAGTGTCCTGATG 59.792 57.143 0.00 0.00 41.50 3.07
747 835 2.179427 CCTGTACCAGTGTCCTGATGA 58.821 52.381 0.00 0.00 41.50 2.92
748 836 2.567169 CCTGTACCAGTGTCCTGATGAA 59.433 50.000 0.00 0.00 41.50 2.57
749 837 3.007940 CCTGTACCAGTGTCCTGATGAAA 59.992 47.826 0.00 0.00 41.50 2.69
750 838 4.323792 CCTGTACCAGTGTCCTGATGAAAT 60.324 45.833 0.00 0.00 41.50 2.17
751 839 4.578871 TGTACCAGTGTCCTGATGAAATG 58.421 43.478 0.00 0.00 41.50 2.32
752 840 2.440409 ACCAGTGTCCTGATGAAATGC 58.560 47.619 0.00 0.00 41.50 3.56
753 841 2.040813 ACCAGTGTCCTGATGAAATGCT 59.959 45.455 0.00 0.00 41.50 3.79
754 842 2.422479 CCAGTGTCCTGATGAAATGCTG 59.578 50.000 0.00 0.00 41.50 4.41
755 843 2.089980 AGTGTCCTGATGAAATGCTGC 58.910 47.619 0.00 0.00 0.00 5.25
756 844 1.814394 GTGTCCTGATGAAATGCTGCA 59.186 47.619 4.13 4.13 0.00 4.41
757 845 2.426024 GTGTCCTGATGAAATGCTGCAT 59.574 45.455 9.81 9.81 0.00 3.96
758 846 2.686405 TGTCCTGATGAAATGCTGCATC 59.314 45.455 16.55 5.91 40.92 3.91
759 847 1.944709 TCCTGATGAAATGCTGCATCG 59.055 47.619 16.55 1.03 42.88 3.84
760 848 1.944709 CCTGATGAAATGCTGCATCGA 59.055 47.619 16.55 3.15 42.88 3.59
761 849 2.286831 CCTGATGAAATGCTGCATCGAC 60.287 50.000 16.55 10.57 42.88 4.20
762 850 2.353579 CTGATGAAATGCTGCATCGACA 59.646 45.455 16.55 15.50 42.88 4.35
763 851 2.946990 TGATGAAATGCTGCATCGACAT 59.053 40.909 16.55 19.05 42.88 3.06
764 852 3.379057 TGATGAAATGCTGCATCGACATT 59.621 39.130 16.55 5.88 42.88 2.71
765 853 4.575645 TGATGAAATGCTGCATCGACATTA 59.424 37.500 16.55 14.18 42.88 1.90
766 854 4.961435 TGAAATGCTGCATCGACATTAA 57.039 36.364 16.55 0.00 33.01 1.40
767 855 4.912214 TGAAATGCTGCATCGACATTAAG 58.088 39.130 16.55 0.00 33.01 1.85
768 856 4.395854 TGAAATGCTGCATCGACATTAAGT 59.604 37.500 16.55 0.00 33.01 2.24
769 857 4.970662 AATGCTGCATCGACATTAAGTT 57.029 36.364 16.55 0.00 32.42 2.66
770 858 4.970662 ATGCTGCATCGACATTAAGTTT 57.029 36.364 9.81 0.00 0.00 2.66
771 859 4.082274 TGCTGCATCGACATTAAGTTTG 57.918 40.909 0.00 0.00 0.00 2.93
772 860 3.750652 TGCTGCATCGACATTAAGTTTGA 59.249 39.130 0.00 0.00 0.00 2.69
773 861 4.395854 TGCTGCATCGACATTAAGTTTGAT 59.604 37.500 0.00 0.00 0.00 2.57
774 862 4.731961 GCTGCATCGACATTAAGTTTGATG 59.268 41.667 10.25 10.25 42.04 3.07
775 863 5.447683 GCTGCATCGACATTAAGTTTGATGA 60.448 40.000 15.85 5.24 41.86 2.92
776 864 5.868257 TGCATCGACATTAAGTTTGATGAC 58.132 37.500 15.85 9.98 41.86 3.06
777 865 4.957967 GCATCGACATTAAGTTTGATGACG 59.042 41.667 15.85 12.55 41.86 4.35
778 866 4.577687 TCGACATTAAGTTTGATGACGC 57.422 40.909 13.46 0.49 40.19 5.19
779 867 3.369756 TCGACATTAAGTTTGATGACGCC 59.630 43.478 13.46 0.00 40.19 5.68
780 868 3.485216 CGACATTAAGTTTGATGACGCCC 60.485 47.826 8.06 0.00 36.18 6.13
781 869 3.686016 ACATTAAGTTTGATGACGCCCT 58.314 40.909 3.94 0.00 0.00 5.19
782 870 3.689649 ACATTAAGTTTGATGACGCCCTC 59.310 43.478 3.94 0.00 0.00 4.30
783 871 3.410631 TTAAGTTTGATGACGCCCTCA 57.589 42.857 0.00 0.00 0.00 3.86
784 872 1.813513 AAGTTTGATGACGCCCTCAG 58.186 50.000 0.00 0.00 30.20 3.35
785 873 0.036010 AGTTTGATGACGCCCTCAGG 60.036 55.000 0.00 0.00 30.20 3.86
802 890 4.740822 GCGGCTGGGACCAACCAT 62.741 66.667 11.09 0.00 40.36 3.55
803 891 2.751436 CGGCTGGGACCAACCATG 60.751 66.667 11.09 0.00 40.36 3.66
804 892 2.440599 GGCTGGGACCAACCATGT 59.559 61.111 5.92 0.00 40.36 3.21
805 893 1.678970 GGCTGGGACCAACCATGTC 60.679 63.158 5.92 0.00 40.36 3.06
806 894 1.380302 GCTGGGACCAACCATGTCT 59.620 57.895 0.00 0.00 40.36 3.41
807 895 0.251341 GCTGGGACCAACCATGTCTT 60.251 55.000 0.00 0.00 40.36 3.01
808 896 1.823250 GCTGGGACCAACCATGTCTTT 60.823 52.381 0.00 0.00 40.36 2.52
809 897 2.597455 CTGGGACCAACCATGTCTTTT 58.403 47.619 0.00 0.00 40.36 2.27
810 898 3.761897 CTGGGACCAACCATGTCTTTTA 58.238 45.455 0.00 0.00 40.36 1.52
811 899 4.148838 CTGGGACCAACCATGTCTTTTAA 58.851 43.478 0.00 0.00 40.36 1.52
812 900 4.746466 TGGGACCAACCATGTCTTTTAAT 58.254 39.130 0.00 0.00 41.20 1.40
813 901 5.151454 TGGGACCAACCATGTCTTTTAATT 58.849 37.500 0.00 0.00 41.20 1.40
814 902 5.604650 TGGGACCAACCATGTCTTTTAATTT 59.395 36.000 0.00 0.00 41.20 1.82
815 903 6.100424 TGGGACCAACCATGTCTTTTAATTTT 59.900 34.615 0.00 0.00 41.20 1.82
816 904 7.290248 TGGGACCAACCATGTCTTTTAATTTTA 59.710 33.333 0.00 0.00 41.20 1.52
817 905 7.817478 GGGACCAACCATGTCTTTTAATTTTAG 59.183 37.037 0.00 0.00 41.20 1.85
818 906 8.364894 GGACCAACCATGTCTTTTAATTTTAGT 58.635 33.333 0.00 0.00 38.79 2.24
819 907 9.758651 GACCAACCATGTCTTTTAATTTTAGTT 57.241 29.630 0.00 0.00 0.00 2.24
822 910 9.862585 CAACCATGTCTTTTAATTTTAGTTTGC 57.137 29.630 0.00 0.00 0.00 3.68
823 911 9.830975 AACCATGTCTTTTAATTTTAGTTTGCT 57.169 25.926 0.00 0.00 0.00 3.91
824 912 9.830975 ACCATGTCTTTTAATTTTAGTTTGCTT 57.169 25.926 0.00 0.00 0.00 3.91
837 925 3.898482 AGTTTGCTTCAACCTTACCTGT 58.102 40.909 0.00 0.00 0.00 4.00
896 984 2.049618 GCTAGATCGGCCGCTCAG 60.050 66.667 28.97 22.79 0.00 3.35
925 1013 0.611896 TCCAGTCCATCTCGCACAGA 60.612 55.000 0.00 0.00 34.78 3.41
927 1015 0.529833 CAGTCCATCTCGCACAGAGT 59.470 55.000 0.00 0.00 46.86 3.24
928 1016 0.529833 AGTCCATCTCGCACAGAGTG 59.470 55.000 0.00 0.00 46.86 3.51
930 1018 1.812922 CCATCTCGCACAGAGTGGC 60.813 63.158 0.00 0.00 46.86 5.01
942 1030 1.227383 GAGTGGCGATGGGGGAAAT 59.773 57.895 0.00 0.00 0.00 2.17
953 1042 3.466395 TGGGGGAAATTGAAGGTAAGG 57.534 47.619 0.00 0.00 0.00 2.69
957 1046 4.841813 GGGGGAAATTGAAGGTAAGGAAAA 59.158 41.667 0.00 0.00 0.00 2.29
958 1047 5.487488 GGGGGAAATTGAAGGTAAGGAAAAT 59.513 40.000 0.00 0.00 0.00 1.82
959 1048 6.351881 GGGGGAAATTGAAGGTAAGGAAAATC 60.352 42.308 0.00 0.00 0.00 2.17
960 1049 6.440647 GGGGAAATTGAAGGTAAGGAAAATCT 59.559 38.462 0.00 0.00 0.00 2.40
1613 1714 2.694760 GCAGCAAGAAGAAGCCCGG 61.695 63.158 0.00 0.00 0.00 5.73
2010 2111 4.393834 TCGAGATGTCCAACCAATTTTCA 58.606 39.130 0.00 0.00 0.00 2.69
2040 2141 2.013483 CGAGCTCGATGATGCCGTC 61.013 63.158 32.06 0.00 43.02 4.79
2304 2405 2.290577 GCCACAGGAGGAATTCTTCAGT 60.291 50.000 18.21 12.99 0.00 3.41
2361 2462 4.340617 ACCAGTTCTTGTTTGACCTTGAA 58.659 39.130 0.00 0.00 0.00 2.69
2481 2582 1.519719 GAAGCTGAGTGAGGCGGAT 59.480 57.895 0.00 0.00 0.00 4.18
2488 2589 2.363680 CTGAGTGAGGCGGATAAGTCAT 59.636 50.000 0.00 0.00 0.00 3.06
2577 2678 3.987745 AGTCAAGCTAGAGGAGATGGAA 58.012 45.455 0.00 0.00 0.00 3.53
2627 2728 1.690893 CGATGAGGGTGGTGATGAGAT 59.309 52.381 0.00 0.00 0.00 2.75
2638 2739 3.840078 TGGTGATGAGATTGGAAGTGAGA 59.160 43.478 0.00 0.00 0.00 3.27
2685 2786 5.471456 GGAGGTTGATGTGATTGATGATACC 59.529 44.000 0.00 0.00 0.00 2.73
2696 2797 5.246883 TGATTGATGATACCGAGGATGATGT 59.753 40.000 0.00 0.00 0.00 3.06
2697 2798 6.437162 TGATTGATGATACCGAGGATGATGTA 59.563 38.462 0.00 0.00 0.00 2.29
2698 2799 5.904362 TGATGATACCGAGGATGATGTAG 57.096 43.478 0.00 0.00 0.00 2.74
2699 2800 5.570320 TGATGATACCGAGGATGATGTAGA 58.430 41.667 0.00 0.00 0.00 2.59
2700 2801 5.416013 TGATGATACCGAGGATGATGTAGAC 59.584 44.000 0.00 0.00 0.00 2.59
2701 2802 4.725490 TGATACCGAGGATGATGTAGACA 58.275 43.478 0.00 0.00 0.00 3.41
2702 2803 5.137551 TGATACCGAGGATGATGTAGACAA 58.862 41.667 0.00 0.00 0.00 3.18
2703 2804 3.802948 ACCGAGGATGATGTAGACAAC 57.197 47.619 0.00 0.00 0.00 3.32
2704 2805 2.099263 ACCGAGGATGATGTAGACAACG 59.901 50.000 0.00 0.00 0.00 4.10
2705 2806 2.357952 CCGAGGATGATGTAGACAACGA 59.642 50.000 0.00 0.00 0.00 3.85
2706 2807 3.364062 CGAGGATGATGTAGACAACGAC 58.636 50.000 0.00 0.00 0.00 4.34
2730 2831 3.184628 TGAGGATGAGGAAGTGGTTGAT 58.815 45.455 0.00 0.00 0.00 2.57
2758 2859 3.269178 GAAGAGGTGGAAGCAGATGAAG 58.731 50.000 0.00 0.00 36.26 3.02
2824 2925 6.459573 GCAATGGGATAAAGCGATGAAAAGTA 60.460 38.462 0.00 0.00 0.00 2.24
2825 2926 7.479980 CAATGGGATAAAGCGATGAAAAGTAA 58.520 34.615 0.00 0.00 0.00 2.24
2931 3032 0.532115 AATCGCAAATGGGCACTTCC 59.468 50.000 0.00 0.00 0.00 3.46
2934 3035 0.247185 CGCAAATGGGCACTTCCAAT 59.753 50.000 0.00 0.00 40.62 3.16
3066 3167 3.080121 CTCTTCCTGAGGGCGGCT 61.080 66.667 9.56 0.00 39.08 5.52
3155 3256 8.489489 TGATGGAGAGATAGTTTAGCTTCAAAT 58.511 33.333 0.00 0.00 0.00 2.32
3226 3327 8.650143 AAGAAGCATCTTCCTTGGTTATTTAA 57.350 30.769 0.00 0.00 42.26 1.52
3255 3356 2.027561 AGCTGTATTTAGGGCGTGTTGA 60.028 45.455 0.00 0.00 0.00 3.18
3284 3385 5.479124 TTGTAGTTCTGAACCTAGGGAAC 57.521 43.478 14.81 15.93 38.51 3.62
3320 3421 6.551601 TGTAATTCTTCCCCTGCAAAAGTTTA 59.448 34.615 0.00 0.00 0.00 2.01
3328 3429 7.732222 TCCCCTGCAAAAGTTTATAATGAAT 57.268 32.000 0.00 0.00 0.00 2.57
3330 3431 8.601546 TCCCCTGCAAAAGTTTATAATGAATTT 58.398 29.630 0.00 0.00 0.00 1.82
3331 3432 8.667463 CCCCTGCAAAAGTTTATAATGAATTTG 58.333 33.333 0.00 8.20 0.00 2.32
3332 3433 9.434420 CCCTGCAAAAGTTTATAATGAATTTGA 57.566 29.630 13.37 3.75 0.00 2.69
3372 3480 7.348274 TGTTTCTGATATATTGAGTTCTCCCCT 59.652 37.037 0.00 0.00 0.00 4.79
3459 3583 6.947464 ACAACTGTTACTATCTAATGTGGCT 58.053 36.000 0.00 0.00 0.00 4.75
3486 3610 4.142381 GGAGTTATTTCCATGTCACTTGCC 60.142 45.833 0.00 0.00 37.20 4.52
3492 3616 0.911769 CCATGTCACTTGCCCCTCTA 59.088 55.000 0.00 0.00 0.00 2.43
3512 3637 8.850156 CCCTCTATATAATCAACAAAAACCAGG 58.150 37.037 0.00 0.00 0.00 4.45
3516 3641 7.716799 ATATAATCAACAAAAACCAGGCTGA 57.283 32.000 17.94 0.00 0.00 4.26
3522 3647 3.299503 ACAAAAACCAGGCTGATCAACT 58.700 40.909 17.94 0.00 0.00 3.16
3550 3675 4.569943 TCAGAAGAATAGACAGCCACAAC 58.430 43.478 0.00 0.00 0.00 3.32
3597 3722 2.413453 GCGATGCTGCTAAACTATAGGC 59.587 50.000 4.43 0.00 0.00 3.93
3695 3828 6.183360 TGTTTTACTGAGCTAAAACAATGGCA 60.183 34.615 18.43 0.00 46.39 4.92
3722 3855 4.251268 TGATCTCAGCTGAATGTGAAGTG 58.749 43.478 18.85 2.53 0.00 3.16
3751 3884 6.517362 GCCATCTAGCAACTTTTCTTTTTCCT 60.517 38.462 0.00 0.00 0.00 3.36
3752 3885 6.865205 CCATCTAGCAACTTTTCTTTTTCCTG 59.135 38.462 0.00 0.00 0.00 3.86
3753 3886 7.255590 CCATCTAGCAACTTTTCTTTTTCCTGA 60.256 37.037 0.00 0.00 0.00 3.86
3754 3887 7.823745 TCTAGCAACTTTTCTTTTTCCTGAT 57.176 32.000 0.00 0.00 0.00 2.90
3789 3922 3.175594 ACATGCCCTGAAAATTGTCCAT 58.824 40.909 0.00 0.00 0.00 3.41
3799 3932 6.295462 CCTGAAAATTGTCCATCAACCATTCT 60.295 38.462 0.00 0.00 38.97 2.40
3877 4010 3.947834 ACATGATTTTTAGCTTCCCCTCG 59.052 43.478 0.00 0.00 0.00 4.63
3885 4018 7.527568 TTTTTAGCTTCCCCTCGAAAAATTA 57.472 32.000 0.00 0.00 0.00 1.40
3927 4060 2.095059 CGCAGAGCCAGCTTTACATTTT 60.095 45.455 0.00 0.00 0.00 1.82
3956 4089 2.516923 AGTTGTAAAGCTCGACGATCG 58.483 47.619 14.88 14.88 42.10 3.69
4085 4218 4.875544 TGACGCTAGAATAAACAATGGC 57.124 40.909 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.551396 GCCCATGTACCCTTTAGCCT 59.449 55.000 0.00 0.00 0.00 4.58
16 17 3.545703 CTGAAGCCCATGTACCCTTTAG 58.454 50.000 0.00 0.00 0.00 1.85
17 18 2.356741 GCTGAAGCCCATGTACCCTTTA 60.357 50.000 0.00 0.00 34.31 1.85
36 38 0.830648 TCTGCGCATAGTAAAGGGCT 59.169 50.000 12.24 0.00 43.26 5.19
101 158 0.390472 GGACAGAAGAGAAGCACCGG 60.390 60.000 0.00 0.00 0.00 5.28
105 162 1.898472 CCAGAGGACAGAAGAGAAGCA 59.102 52.381 0.00 0.00 0.00 3.91
109 166 3.689858 GCCTATCCAGAGGACAGAAGAGA 60.690 52.174 0.00 0.00 39.15 3.10
240 308 0.386113 GCCCCTAGAAGCGTCTACAG 59.614 60.000 5.17 0.00 35.12 2.74
379 467 1.512926 AAGTCCGAGATGTTGTGCAC 58.487 50.000 10.75 10.75 0.00 4.57
446 534 0.448593 CGAGACCGAGGTGACTTCTC 59.551 60.000 0.00 0.00 44.43 2.87
486 574 1.834263 GTGCTAAGAGGACCCATGACT 59.166 52.381 0.00 0.00 29.54 3.41
492 580 0.896226 ACGAAGTGCTAAGAGGACCC 59.104 55.000 0.00 0.00 42.51 4.46
521 609 1.699634 CGGTCATTCCCATGGACCTAT 59.300 52.381 15.22 0.00 32.50 2.57
548 636 0.615331 AGCGGATTGTGATGTGGAGT 59.385 50.000 0.00 0.00 0.00 3.85
553 641 2.503331 TGTCAAAGCGGATTGTGATGT 58.497 42.857 0.00 0.00 0.00 3.06
560 648 6.515272 ACAAAATCTATGTCAAAGCGGATT 57.485 33.333 0.00 0.00 0.00 3.01
561 649 6.515272 AACAAAATCTATGTCAAAGCGGAT 57.485 33.333 0.00 0.00 0.00 4.18
562 650 5.957842 AACAAAATCTATGTCAAAGCGGA 57.042 34.783 0.00 0.00 0.00 5.54
563 651 6.607689 TGTAACAAAATCTATGTCAAAGCGG 58.392 36.000 0.00 0.00 0.00 5.52
564 652 7.060633 GGTTGTAACAAAATCTATGTCAAAGCG 59.939 37.037 0.00 0.00 0.00 4.68
565 653 7.865385 TGGTTGTAACAAAATCTATGTCAAAGC 59.135 33.333 0.00 0.00 0.00 3.51
566 654 9.743057 TTGGTTGTAACAAAATCTATGTCAAAG 57.257 29.630 0.00 0.00 0.00 2.77
567 655 9.522804 GTTGGTTGTAACAAAATCTATGTCAAA 57.477 29.630 0.00 0.00 0.00 2.69
568 656 8.908903 AGTTGGTTGTAACAAAATCTATGTCAA 58.091 29.630 0.00 0.00 33.02 3.18
569 657 8.458573 AGTTGGTTGTAACAAAATCTATGTCA 57.541 30.769 0.00 0.00 33.02 3.58
570 658 9.394477 GAAGTTGGTTGTAACAAAATCTATGTC 57.606 33.333 0.00 0.00 33.02 3.06
571 659 8.908903 TGAAGTTGGTTGTAACAAAATCTATGT 58.091 29.630 0.00 0.00 33.02 2.29
572 660 9.912634 ATGAAGTTGGTTGTAACAAAATCTATG 57.087 29.630 0.00 0.00 33.02 2.23
574 662 9.959749 GAATGAAGTTGGTTGTAACAAAATCTA 57.040 29.630 0.00 0.00 33.02 1.98
575 663 7.647715 CGAATGAAGTTGGTTGTAACAAAATCT 59.352 33.333 0.00 0.00 33.02 2.40
576 664 7.566868 GCGAATGAAGTTGGTTGTAACAAAATC 60.567 37.037 0.00 0.00 33.02 2.17
577 665 6.200097 GCGAATGAAGTTGGTTGTAACAAAAT 59.800 34.615 0.00 0.00 33.02 1.82
578 666 5.517054 GCGAATGAAGTTGGTTGTAACAAAA 59.483 36.000 0.00 0.00 33.02 2.44
579 667 5.038033 GCGAATGAAGTTGGTTGTAACAAA 58.962 37.500 0.00 0.00 33.02 2.83
580 668 4.336993 AGCGAATGAAGTTGGTTGTAACAA 59.663 37.500 0.00 0.00 33.02 2.83
581 669 3.880490 AGCGAATGAAGTTGGTTGTAACA 59.120 39.130 0.00 0.00 33.02 2.41
582 670 4.483476 AGCGAATGAAGTTGGTTGTAAC 57.517 40.909 0.00 0.00 0.00 2.50
583 671 5.302360 ACTAGCGAATGAAGTTGGTTGTAA 58.698 37.500 0.00 0.00 0.00 2.41
584 672 4.890088 ACTAGCGAATGAAGTTGGTTGTA 58.110 39.130 0.00 0.00 0.00 2.41
585 673 3.740115 ACTAGCGAATGAAGTTGGTTGT 58.260 40.909 0.00 0.00 0.00 3.32
586 674 4.330074 CCTACTAGCGAATGAAGTTGGTTG 59.670 45.833 0.00 0.00 33.26 3.77
587 675 4.222145 TCCTACTAGCGAATGAAGTTGGTT 59.778 41.667 0.00 0.00 37.40 3.67
588 676 3.767673 TCCTACTAGCGAATGAAGTTGGT 59.232 43.478 0.00 0.00 37.40 3.67
589 677 4.363999 CTCCTACTAGCGAATGAAGTTGG 58.636 47.826 0.00 0.00 37.44 3.77
590 678 4.363999 CCTCCTACTAGCGAATGAAGTTG 58.636 47.826 0.00 0.00 0.00 3.16
591 679 3.181474 GCCTCCTACTAGCGAATGAAGTT 60.181 47.826 0.00 0.00 0.00 2.66
592 680 2.362717 GCCTCCTACTAGCGAATGAAGT 59.637 50.000 0.00 0.00 0.00 3.01
593 681 2.288518 GGCCTCCTACTAGCGAATGAAG 60.289 54.545 0.00 0.00 0.00 3.02
594 682 1.687123 GGCCTCCTACTAGCGAATGAA 59.313 52.381 0.00 0.00 0.00 2.57
595 683 1.329256 GGCCTCCTACTAGCGAATGA 58.671 55.000 0.00 0.00 0.00 2.57
596 684 1.040646 TGGCCTCCTACTAGCGAATG 58.959 55.000 3.32 0.00 0.00 2.67
597 685 1.896465 GATGGCCTCCTACTAGCGAAT 59.104 52.381 3.32 0.00 0.00 3.34
598 686 1.133450 AGATGGCCTCCTACTAGCGAA 60.133 52.381 3.32 0.00 0.00 4.70
599 687 0.478942 AGATGGCCTCCTACTAGCGA 59.521 55.000 3.32 0.00 0.00 4.93
600 688 0.885196 GAGATGGCCTCCTACTAGCG 59.115 60.000 3.32 0.00 35.87 4.26
601 689 0.885196 CGAGATGGCCTCCTACTAGC 59.115 60.000 3.32 0.00 38.71 3.42
602 690 2.279935 ACGAGATGGCCTCCTACTAG 57.720 55.000 3.32 0.00 38.71 2.57
603 691 2.709934 ACTACGAGATGGCCTCCTACTA 59.290 50.000 3.32 0.00 38.71 1.82
604 692 1.495574 ACTACGAGATGGCCTCCTACT 59.504 52.381 3.32 0.00 38.71 2.57
605 693 1.881324 GACTACGAGATGGCCTCCTAC 59.119 57.143 3.32 0.00 38.71 3.18
606 694 1.202903 GGACTACGAGATGGCCTCCTA 60.203 57.143 3.32 0.00 38.71 2.94
607 695 0.468400 GGACTACGAGATGGCCTCCT 60.468 60.000 3.32 0.00 38.71 3.69
608 696 0.468400 AGGACTACGAGATGGCCTCC 60.468 60.000 3.32 0.00 38.71 4.30
609 697 0.955905 GAGGACTACGAGATGGCCTC 59.044 60.000 3.32 0.00 38.55 4.70
610 698 0.553819 AGAGGACTACGAGATGGCCT 59.446 55.000 3.32 0.00 0.00 5.19
611 699 2.156098 CTAGAGGACTACGAGATGGCC 58.844 57.143 0.00 0.00 0.00 5.36
612 700 1.538075 GCTAGAGGACTACGAGATGGC 59.462 57.143 0.00 0.00 0.00 4.40
613 701 2.156098 GGCTAGAGGACTACGAGATGG 58.844 57.143 0.00 0.00 0.00 3.51
614 702 3.071479 GAGGCTAGAGGACTACGAGATG 58.929 54.545 0.00 0.00 30.21 2.90
615 703 2.976882 AGAGGCTAGAGGACTACGAGAT 59.023 50.000 0.00 0.00 30.21 2.75
616 704 2.103432 CAGAGGCTAGAGGACTACGAGA 59.897 54.545 0.00 0.00 30.21 4.04
617 705 2.158871 ACAGAGGCTAGAGGACTACGAG 60.159 54.545 0.00 0.00 30.21 4.18
618 706 1.838715 ACAGAGGCTAGAGGACTACGA 59.161 52.381 0.00 0.00 30.21 3.43
619 707 2.215196 GACAGAGGCTAGAGGACTACG 58.785 57.143 0.00 0.00 30.21 3.51
620 708 2.215196 CGACAGAGGCTAGAGGACTAC 58.785 57.143 0.00 0.00 30.21 2.73
621 709 1.838715 ACGACAGAGGCTAGAGGACTA 59.161 52.381 0.00 0.00 30.21 2.59
622 710 0.621609 ACGACAGAGGCTAGAGGACT 59.378 55.000 0.00 0.00 34.86 3.85
623 711 1.018910 GACGACAGAGGCTAGAGGAC 58.981 60.000 0.00 0.00 0.00 3.85
624 712 0.462225 CGACGACAGAGGCTAGAGGA 60.462 60.000 0.00 0.00 0.00 3.71
625 713 0.462225 TCGACGACAGAGGCTAGAGG 60.462 60.000 0.00 0.00 0.00 3.69
626 714 0.653636 GTCGACGACAGAGGCTAGAG 59.346 60.000 22.66 0.00 32.09 2.43
627 715 1.082679 CGTCGACGACAGAGGCTAGA 61.083 60.000 33.35 0.00 43.02 2.43
628 716 1.348938 CGTCGACGACAGAGGCTAG 59.651 63.158 33.35 4.94 43.02 3.42
629 717 2.747822 GCGTCGACGACAGAGGCTA 61.748 63.158 39.74 0.00 43.62 3.93
630 718 4.104417 GCGTCGACGACAGAGGCT 62.104 66.667 39.74 0.00 43.62 4.58
632 720 3.978867 GACGCGTCGACGACAGAGG 62.979 68.421 39.74 21.48 43.02 3.69
633 721 2.495921 AAGACGCGTCGACGACAGAG 62.496 60.000 39.74 24.53 43.02 3.35
634 722 2.490262 GAAGACGCGTCGACGACAGA 62.490 60.000 39.74 0.00 43.02 3.41
635 723 2.127345 AAGACGCGTCGACGACAG 60.127 61.111 39.74 29.11 43.02 3.51
636 724 2.127496 GAAGACGCGTCGACGACA 60.127 61.111 39.74 0.00 43.02 4.35
637 725 2.868787 GGAAGACGCGTCGACGAC 60.869 66.667 39.74 27.82 43.02 4.34
638 726 3.348205 TGGAAGACGCGTCGACGA 61.348 61.111 39.74 22.74 43.02 4.20
639 727 3.164011 GTGGAAGACGCGTCGACG 61.164 66.667 32.57 32.57 43.27 5.12
640 728 1.210545 TTTGTGGAAGACGCGTCGAC 61.211 55.000 31.56 26.76 34.09 4.20
641 729 0.937699 CTTTGTGGAAGACGCGTCGA 60.938 55.000 31.56 15.41 37.57 4.20
642 730 1.487231 CTTTGTGGAAGACGCGTCG 59.513 57.895 31.56 11.82 37.57 5.12
643 731 1.566018 CCCTTTGTGGAAGACGCGTC 61.566 60.000 31.30 31.30 37.57 5.19
644 732 1.597027 CCCTTTGTGGAAGACGCGT 60.597 57.895 13.85 13.85 37.57 6.01
645 733 0.320073 TACCCTTTGTGGAAGACGCG 60.320 55.000 3.53 3.53 37.57 6.01
646 734 2.109425 ATACCCTTTGTGGAAGACGC 57.891 50.000 0.00 0.00 37.57 5.19
647 735 4.809426 GTGATATACCCTTTGTGGAAGACG 59.191 45.833 0.00 0.00 37.57 4.18
648 736 5.817816 CAGTGATATACCCTTTGTGGAAGAC 59.182 44.000 0.00 0.00 37.57 3.01
649 737 5.629133 GCAGTGATATACCCTTTGTGGAAGA 60.629 44.000 0.00 0.00 37.57 2.87
650 738 4.576463 GCAGTGATATACCCTTTGTGGAAG 59.424 45.833 0.00 0.00 38.35 3.46
651 739 4.018870 TGCAGTGATATACCCTTTGTGGAA 60.019 41.667 0.00 0.00 38.35 3.53
652 740 3.521531 TGCAGTGATATACCCTTTGTGGA 59.478 43.478 0.00 0.00 38.35 4.02
653 741 3.884895 TGCAGTGATATACCCTTTGTGG 58.115 45.455 0.00 0.00 0.00 4.17
654 742 5.895636 TTTGCAGTGATATACCCTTTGTG 57.104 39.130 0.00 0.00 0.00 3.33
655 743 6.572314 GCTTTTTGCAGTGATATACCCTTTGT 60.572 38.462 0.00 0.00 42.31 2.83
656 744 5.807011 GCTTTTTGCAGTGATATACCCTTTG 59.193 40.000 0.00 0.00 42.31 2.77
657 745 5.965922 GCTTTTTGCAGTGATATACCCTTT 58.034 37.500 0.00 0.00 42.31 3.11
658 746 5.582689 GCTTTTTGCAGTGATATACCCTT 57.417 39.130 0.00 0.00 42.31 3.95
672 760 4.090729 GTTTCTTTGTTGCTGCTTTTTGC 58.909 39.130 0.00 0.00 43.25 3.68
673 761 4.650985 GGTTTCTTTGTTGCTGCTTTTTG 58.349 39.130 0.00 0.00 0.00 2.44
674 762 3.370672 CGGTTTCTTTGTTGCTGCTTTTT 59.629 39.130 0.00 0.00 0.00 1.94
675 763 2.929398 CGGTTTCTTTGTTGCTGCTTTT 59.071 40.909 0.00 0.00 0.00 2.27
676 764 2.539476 CGGTTTCTTTGTTGCTGCTTT 58.461 42.857 0.00 0.00 0.00 3.51
677 765 1.202405 CCGGTTTCTTTGTTGCTGCTT 60.202 47.619 0.00 0.00 0.00 3.91
678 766 0.385390 CCGGTTTCTTTGTTGCTGCT 59.615 50.000 0.00 0.00 0.00 4.24
679 767 1.215014 GCCGGTTTCTTTGTTGCTGC 61.215 55.000 1.90 0.00 0.00 5.25
680 768 0.385390 AGCCGGTTTCTTTGTTGCTG 59.615 50.000 1.90 0.00 0.00 4.41
681 769 1.067060 GAAGCCGGTTTCTTTGTTGCT 59.933 47.619 22.42 0.00 0.00 3.91
682 770 1.202359 TGAAGCCGGTTTCTTTGTTGC 60.202 47.619 28.20 4.05 0.00 4.17
683 771 2.861462 TGAAGCCGGTTTCTTTGTTG 57.139 45.000 28.20 0.00 0.00 3.33
684 772 2.955660 TGATGAAGCCGGTTTCTTTGTT 59.044 40.909 28.20 10.69 0.00 2.83
685 773 2.293399 GTGATGAAGCCGGTTTCTTTGT 59.707 45.455 28.20 13.82 0.00 2.83
686 774 2.665519 CGTGATGAAGCCGGTTTCTTTG 60.666 50.000 28.20 14.00 0.00 2.77
687 775 1.535462 CGTGATGAAGCCGGTTTCTTT 59.465 47.619 28.20 17.43 0.00 2.52
688 776 1.156736 CGTGATGAAGCCGGTTTCTT 58.843 50.000 28.20 23.01 0.00 2.52
689 777 1.298859 GCGTGATGAAGCCGGTTTCT 61.299 55.000 28.20 15.77 0.00 2.52
690 778 1.134694 GCGTGATGAAGCCGGTTTC 59.865 57.895 22.85 22.85 0.00 2.78
691 779 1.577328 CTGCGTGATGAAGCCGGTTT 61.577 55.000 1.95 1.95 0.00 3.27
692 780 2.031919 TGCGTGATGAAGCCGGTT 59.968 55.556 1.90 0.00 0.00 4.44
693 781 2.434884 CTGCGTGATGAAGCCGGT 60.435 61.111 1.90 0.00 0.00 5.28
694 782 3.869272 GCTGCGTGATGAAGCCGG 61.869 66.667 0.00 0.00 44.32 6.13
708 796 1.078848 GGGTACTGGAGCAGTGCTG 60.079 63.158 25.35 11.17 45.01 4.41
709 797 2.294078 GGGGTACTGGAGCAGTGCT 61.294 63.158 19.86 19.86 45.01 4.40
710 798 2.269241 GGGGTACTGGAGCAGTGC 59.731 66.667 7.13 7.13 45.01 4.40
711 799 1.613630 AGGGGGTACTGGAGCAGTG 60.614 63.158 0.00 0.00 45.01 3.66
713 801 0.325296 TACAGGGGGTACTGGAGCAG 60.325 60.000 0.00 0.00 42.75 4.24
714 802 1.785067 TACAGGGGGTACTGGAGCA 59.215 57.895 0.00 0.00 42.75 4.26
715 803 4.800764 TACAGGGGGTACTGGAGC 57.199 61.111 0.00 0.00 42.75 4.70
729 817 4.578871 CATTTCATCAGGACACTGGTACA 58.421 43.478 0.00 0.00 44.99 2.90
730 818 3.375299 GCATTTCATCAGGACACTGGTAC 59.625 47.826 0.00 0.00 44.99 3.34
731 819 3.264193 AGCATTTCATCAGGACACTGGTA 59.736 43.478 0.00 0.00 44.99 3.25
732 820 2.040813 AGCATTTCATCAGGACACTGGT 59.959 45.455 0.00 0.00 44.99 4.00
733 821 2.422479 CAGCATTTCATCAGGACACTGG 59.578 50.000 0.00 0.00 44.99 4.00
734 822 2.159421 GCAGCATTTCATCAGGACACTG 60.159 50.000 0.00 0.00 46.30 3.66
735 823 2.089980 GCAGCATTTCATCAGGACACT 58.910 47.619 0.00 0.00 0.00 3.55
736 824 1.814394 TGCAGCATTTCATCAGGACAC 59.186 47.619 0.00 0.00 0.00 3.67
737 825 2.203470 TGCAGCATTTCATCAGGACA 57.797 45.000 0.00 0.00 0.00 4.02
738 826 2.286831 CGATGCAGCATTTCATCAGGAC 60.287 50.000 9.90 0.00 39.11 3.85
739 827 1.944709 CGATGCAGCATTTCATCAGGA 59.055 47.619 9.90 0.00 39.11 3.86
740 828 1.944709 TCGATGCAGCATTTCATCAGG 59.055 47.619 9.90 0.00 39.11 3.86
741 829 2.353579 TGTCGATGCAGCATTTCATCAG 59.646 45.455 9.90 0.00 39.11 2.90
742 830 2.358015 TGTCGATGCAGCATTTCATCA 58.642 42.857 9.90 2.82 39.11 3.07
743 831 3.620929 ATGTCGATGCAGCATTTCATC 57.379 42.857 9.90 0.00 36.60 2.92
744 832 5.066893 ACTTAATGTCGATGCAGCATTTCAT 59.933 36.000 9.90 11.40 34.97 2.57
745 833 4.395854 ACTTAATGTCGATGCAGCATTTCA 59.604 37.500 9.90 9.61 34.97 2.69
746 834 4.913376 ACTTAATGTCGATGCAGCATTTC 58.087 39.130 9.90 0.00 34.97 2.17
747 835 4.970662 ACTTAATGTCGATGCAGCATTT 57.029 36.364 9.90 1.71 34.97 2.32
748 836 4.970662 AACTTAATGTCGATGCAGCATT 57.029 36.364 9.90 8.11 36.83 3.56
749 837 4.395854 TCAAACTTAATGTCGATGCAGCAT 59.604 37.500 7.91 7.91 0.00 3.79
750 838 3.750652 TCAAACTTAATGTCGATGCAGCA 59.249 39.130 1.53 0.00 0.00 4.41
751 839 4.340894 TCAAACTTAATGTCGATGCAGC 57.659 40.909 0.00 0.00 0.00 5.25
752 840 5.961843 GTCATCAAACTTAATGTCGATGCAG 59.038 40.000 0.00 0.00 32.25 4.41
753 841 5.445806 CGTCATCAAACTTAATGTCGATGCA 60.446 40.000 0.00 0.00 36.83 3.96
754 842 4.957967 CGTCATCAAACTTAATGTCGATGC 59.042 41.667 0.00 0.00 36.83 3.91
755 843 4.957967 GCGTCATCAAACTTAATGTCGATG 59.042 41.667 6.25 0.00 36.83 3.84
756 844 4.034048 GGCGTCATCAAACTTAATGTCGAT 59.966 41.667 6.25 0.00 36.83 3.59
757 845 3.369756 GGCGTCATCAAACTTAATGTCGA 59.630 43.478 6.25 0.00 36.83 4.20
758 846 3.485216 GGGCGTCATCAAACTTAATGTCG 60.485 47.826 0.00 0.00 37.44 4.35
759 847 3.689649 AGGGCGTCATCAAACTTAATGTC 59.310 43.478 0.00 0.00 0.00 3.06
760 848 3.686016 AGGGCGTCATCAAACTTAATGT 58.314 40.909 0.00 0.00 0.00 2.71
761 849 3.689161 TGAGGGCGTCATCAAACTTAATG 59.311 43.478 0.00 0.00 30.10 1.90
762 850 3.941483 CTGAGGGCGTCATCAAACTTAAT 59.059 43.478 5.65 0.00 33.01 1.40
763 851 3.334691 CTGAGGGCGTCATCAAACTTAA 58.665 45.455 5.65 0.00 33.01 1.85
764 852 2.354704 CCTGAGGGCGTCATCAAACTTA 60.355 50.000 5.65 0.00 33.01 2.24
765 853 1.611673 CCTGAGGGCGTCATCAAACTT 60.612 52.381 5.65 0.00 33.01 2.66
766 854 0.036010 CCTGAGGGCGTCATCAAACT 60.036 55.000 5.65 0.00 33.01 2.66
767 855 2.471255 CCTGAGGGCGTCATCAAAC 58.529 57.895 5.65 0.00 33.01 2.93
787 875 1.678970 GACATGGTTGGTCCCAGCC 60.679 63.158 11.93 11.93 45.77 4.85
788 876 0.251341 AAGACATGGTTGGTCCCAGC 60.251 55.000 0.00 0.00 38.07 4.85
789 877 2.292828 AAAGACATGGTTGGTCCCAG 57.707 50.000 0.00 0.00 38.07 4.45
790 878 2.765689 AAAAGACATGGTTGGTCCCA 57.234 45.000 0.00 0.00 39.27 4.37
791 879 5.738619 AATTAAAAGACATGGTTGGTCCC 57.261 39.130 0.00 0.00 35.89 4.46
792 880 8.364894 ACTAAAATTAAAAGACATGGTTGGTCC 58.635 33.333 0.00 0.00 35.89 4.46
793 881 9.758651 AACTAAAATTAAAAGACATGGTTGGTC 57.241 29.630 0.00 0.00 35.50 4.02
796 884 9.862585 GCAAACTAAAATTAAAAGACATGGTTG 57.137 29.630 0.00 0.00 0.00 3.77
797 885 9.830975 AGCAAACTAAAATTAAAAGACATGGTT 57.169 25.926 0.00 0.00 0.00 3.67
798 886 9.830975 AAGCAAACTAAAATTAAAAGACATGGT 57.169 25.926 0.00 0.00 0.00 3.55
808 896 9.752961 GGTAAGGTTGAAGCAAACTAAAATTAA 57.247 29.630 0.00 0.00 40.86 1.40
809 897 9.138596 AGGTAAGGTTGAAGCAAACTAAAATTA 57.861 29.630 0.00 0.00 40.86 1.40
810 898 7.926018 CAGGTAAGGTTGAAGCAAACTAAAATT 59.074 33.333 0.00 0.00 40.86 1.82
811 899 7.069455 ACAGGTAAGGTTGAAGCAAACTAAAAT 59.931 33.333 0.00 0.00 40.86 1.82
812 900 6.378848 ACAGGTAAGGTTGAAGCAAACTAAAA 59.621 34.615 0.00 0.00 40.86 1.52
813 901 5.889289 ACAGGTAAGGTTGAAGCAAACTAAA 59.111 36.000 0.00 0.00 40.86 1.85
814 902 5.442391 ACAGGTAAGGTTGAAGCAAACTAA 58.558 37.500 0.00 0.00 40.86 2.24
815 903 5.043737 ACAGGTAAGGTTGAAGCAAACTA 57.956 39.130 0.00 0.00 40.86 2.24
816 904 3.898482 ACAGGTAAGGTTGAAGCAAACT 58.102 40.909 0.00 0.00 43.89 2.66
817 905 4.097286 TGAACAGGTAAGGTTGAAGCAAAC 59.903 41.667 0.00 0.00 0.00 2.93
818 906 4.274147 TGAACAGGTAAGGTTGAAGCAAA 58.726 39.130 0.00 0.00 0.00 3.68
819 907 3.892284 TGAACAGGTAAGGTTGAAGCAA 58.108 40.909 0.00 0.00 0.00 3.91
820 908 3.569194 TGAACAGGTAAGGTTGAAGCA 57.431 42.857 0.00 0.00 0.00 3.91
821 909 3.191371 CCATGAACAGGTAAGGTTGAAGC 59.809 47.826 0.00 0.00 0.00 3.86
822 910 3.758554 CCCATGAACAGGTAAGGTTGAAG 59.241 47.826 0.00 0.00 0.00 3.02
823 911 3.761897 CCCATGAACAGGTAAGGTTGAA 58.238 45.455 0.00 0.00 0.00 2.69
824 912 2.554344 GCCCATGAACAGGTAAGGTTGA 60.554 50.000 0.00 0.00 0.00 3.18
825 913 1.818674 GCCCATGAACAGGTAAGGTTG 59.181 52.381 0.00 0.00 0.00 3.77
826 914 1.272480 GGCCCATGAACAGGTAAGGTT 60.272 52.381 0.00 0.00 0.00 3.50
896 984 0.251787 ATGGACTGGAAAGTTGGGCC 60.252 55.000 0.00 0.00 0.00 5.80
925 1013 0.684153 CAATTTCCCCCATCGCCACT 60.684 55.000 0.00 0.00 0.00 4.00
927 1015 0.040351 TTCAATTTCCCCCATCGCCA 59.960 50.000 0.00 0.00 0.00 5.69
928 1016 0.746659 CTTCAATTTCCCCCATCGCC 59.253 55.000 0.00 0.00 0.00 5.54
930 1018 2.143876 ACCTTCAATTTCCCCCATCG 57.856 50.000 0.00 0.00 0.00 3.84
931 1019 3.960755 CCTTACCTTCAATTTCCCCCATC 59.039 47.826 0.00 0.00 0.00 3.51
932 1020 3.600617 TCCTTACCTTCAATTTCCCCCAT 59.399 43.478 0.00 0.00 0.00 4.00
933 1021 2.997463 TCCTTACCTTCAATTTCCCCCA 59.003 45.455 0.00 0.00 0.00 4.96
942 1030 6.715264 GGAGTTGAGATTTTCCTTACCTTCAA 59.285 38.462 0.00 0.00 0.00 2.69
953 1042 3.665190 ACCTGTCGGAGTTGAGATTTTC 58.335 45.455 0.00 0.00 0.00 2.29
957 1046 1.187087 GGACCTGTCGGAGTTGAGAT 58.813 55.000 0.00 0.00 0.00 2.75
958 1047 0.178973 TGGACCTGTCGGAGTTGAGA 60.179 55.000 0.00 0.00 0.00 3.27
959 1048 0.679505 TTGGACCTGTCGGAGTTGAG 59.320 55.000 0.00 0.00 0.00 3.02
960 1049 1.124780 TTTGGACCTGTCGGAGTTGA 58.875 50.000 0.00 0.00 0.00 3.18
1692 1793 1.518792 GCGGTAGAAGGCGTTCTCC 60.519 63.158 23.98 21.14 42.40 3.71
1744 1845 2.637383 GCTCCTCGTCGGTGAAGGT 61.637 63.158 0.00 0.00 0.00 3.50
2238 2339 4.238514 GACGCTTGACATATAGGATGTCC 58.761 47.826 13.60 0.00 45.70 4.02
2361 2462 0.257039 GAATGACCCTGCCATCCTGT 59.743 55.000 0.00 0.00 0.00 4.00
2394 2495 3.963124 AATCCTGCAAAGGCCCCCG 62.963 63.158 0.00 0.00 40.13 5.73
2481 2582 3.834813 AGAACTCCAGACAGCATGACTTA 59.165 43.478 0.00 0.00 39.58 2.24
2488 2589 0.761187 AGCAAGAACTCCAGACAGCA 59.239 50.000 0.00 0.00 0.00 4.41
2529 2630 0.394352 CCTTGGTGTATGGGTGGAGC 60.394 60.000 0.00 0.00 0.00 4.70
2538 2639 3.650942 TGACTTTCCACTCCTTGGTGTAT 59.349 43.478 0.00 0.00 46.97 2.29
2559 2660 4.440880 CAAGTTCCATCTCCTCTAGCTTG 58.559 47.826 0.00 0.00 0.00 4.01
2577 2678 2.672996 GGCGCATCACACCCAAGT 60.673 61.111 10.83 0.00 0.00 3.16
2627 2728 4.951715 CCCAATCAATGATCTCACTTCCAA 59.048 41.667 0.00 0.00 0.00 3.53
2638 2739 5.133383 TCATCCTCAACCCAATCAATGAT 57.867 39.130 0.00 0.00 0.00 2.45
2685 2786 3.065510 AGTCGTTGTCTACATCATCCTCG 59.934 47.826 0.00 0.00 0.00 4.63
2696 2797 4.822350 CCTCATCCTCATAGTCGTTGTCTA 59.178 45.833 0.00 0.00 0.00 2.59
2697 2798 3.634448 CCTCATCCTCATAGTCGTTGTCT 59.366 47.826 0.00 0.00 0.00 3.41
2698 2799 3.632604 TCCTCATCCTCATAGTCGTTGTC 59.367 47.826 0.00 0.00 0.00 3.18
2699 2800 3.632333 TCCTCATCCTCATAGTCGTTGT 58.368 45.455 0.00 0.00 0.00 3.32
2700 2801 4.098654 ACTTCCTCATCCTCATAGTCGTTG 59.901 45.833 0.00 0.00 0.00 4.10
2701 2802 4.098654 CACTTCCTCATCCTCATAGTCGTT 59.901 45.833 0.00 0.00 0.00 3.85
2702 2803 3.634448 CACTTCCTCATCCTCATAGTCGT 59.366 47.826 0.00 0.00 0.00 4.34
2703 2804 3.005261 CCACTTCCTCATCCTCATAGTCG 59.995 52.174 0.00 0.00 0.00 4.18
2704 2805 3.964031 ACCACTTCCTCATCCTCATAGTC 59.036 47.826 0.00 0.00 0.00 2.59
2705 2806 4.000928 ACCACTTCCTCATCCTCATAGT 57.999 45.455 0.00 0.00 0.00 2.12
2706 2807 4.406972 TCAACCACTTCCTCATCCTCATAG 59.593 45.833 0.00 0.00 0.00 2.23
2730 2831 1.070758 GCTTCCACCTCTTCACTGACA 59.929 52.381 0.00 0.00 0.00 3.58
2758 2859 9.959749 CTCATTCTCCTCACTACTTTCTATTAC 57.040 37.037 0.00 0.00 0.00 1.89
2824 2925 8.421249 TTGACCAGTTTCTCCATTTTATCATT 57.579 30.769 0.00 0.00 0.00 2.57
2825 2926 7.890127 TCTTGACCAGTTTCTCCATTTTATCAT 59.110 33.333 0.00 0.00 0.00 2.45
2931 3032 6.321848 TCCTGCTGCATAATCATTGTATTG 57.678 37.500 1.31 0.00 0.00 1.90
2934 3035 3.817084 GCTCCTGCTGCATAATCATTGTA 59.183 43.478 1.31 0.00 36.03 2.41
3066 3167 0.687920 TGTAAGTGAATGGCCGGACA 59.312 50.000 15.46 15.46 0.00 4.02
3155 3256 3.981211 GCAATTCTCCAGTTGCTGAAAA 58.019 40.909 3.07 0.00 45.41 2.29
3226 3327 5.650703 ACGCCCTAAATACAGCTAAACATTT 59.349 36.000 0.00 0.00 0.00 2.32
3255 3356 7.310734 CCCTAGGTTCAGAACTACAAAGAAGAT 60.311 40.741 13.13 0.00 0.00 2.40
3284 3385 5.106157 GGGGAAGAATTACATGACTTGTGTG 60.106 44.000 0.00 0.00 39.48 3.82
3328 3429 7.498900 TCAGAAACATTAGCTTCAAGTCTCAAA 59.501 33.333 0.00 0.00 0.00 2.69
3330 3431 6.524734 TCAGAAACATTAGCTTCAAGTCTCA 58.475 36.000 0.00 0.00 0.00 3.27
3331 3432 7.608308 ATCAGAAACATTAGCTTCAAGTCTC 57.392 36.000 0.00 0.00 0.00 3.36
3372 3480 8.318412 TGAACTAAGCCATACTCAAACTTCATA 58.682 33.333 0.00 0.00 0.00 2.15
3486 3610 8.850156 CCTGGTTTTTGTTGATTATATAGAGGG 58.150 37.037 0.00 0.00 0.00 4.30
3492 3616 7.716799 TCAGCCTGGTTTTTGTTGATTATAT 57.283 32.000 0.00 0.00 0.00 0.86
3512 3637 4.993584 TCTTCTGAGTTTCAGTTGATCAGC 59.006 41.667 0.50 0.50 44.58 4.26
3516 3641 8.370940 TGTCTATTCTTCTGAGTTTCAGTTGAT 58.629 33.333 6.03 0.99 44.58 2.57
3522 3647 5.012046 TGGCTGTCTATTCTTCTGAGTTTCA 59.988 40.000 0.00 0.00 0.00 2.69
3550 3675 2.821366 CCAGCTTGCTGTAGGCCG 60.821 66.667 19.49 1.53 40.92 6.13
3659 3786 4.913924 GCTCAGTAAAACACTTGATTGCTG 59.086 41.667 9.54 9.54 37.89 4.41
3675 3808 4.905429 TCTGCCATTGTTTTAGCTCAGTA 58.095 39.130 0.00 0.00 0.00 2.74
3695 3828 4.650131 TCACATTCAGCTGAGATCAGATCT 59.350 41.667 17.43 13.15 46.59 2.75
3722 3855 6.502136 AAGAAAAGTTGCTAGATGGCTAAC 57.498 37.500 0.00 0.00 0.00 2.34
3751 3884 4.397103 GGCATGTTCAGAATGTCTTCATCA 59.603 41.667 0.00 0.00 37.40 3.07
3752 3885 4.201990 GGGCATGTTCAGAATGTCTTCATC 60.202 45.833 0.00 0.00 37.40 2.92
3753 3886 3.698040 GGGCATGTTCAGAATGTCTTCAT 59.302 43.478 0.00 0.00 37.40 2.57
3754 3887 3.084039 GGGCATGTTCAGAATGTCTTCA 58.916 45.455 0.00 0.00 37.40 3.02
3789 3922 2.069775 TGGGAAAGGGAGAATGGTTGA 58.930 47.619 0.00 0.00 0.00 3.18
3799 3932 5.327737 TTTAGTAGCTTTTGGGAAAGGGA 57.672 39.130 0.00 0.00 42.04 4.20
3877 4010 3.130340 TGAAGGCTCCCGCATAATTTTTC 59.870 43.478 0.00 0.00 38.10 2.29
3885 4018 0.257039 ATTCTTGAAGGCTCCCGCAT 59.743 50.000 0.00 0.00 38.10 4.73
3935 4068 2.526688 CGATCGTCGAGCTTTACAACTC 59.473 50.000 7.03 0.00 43.74 3.01
3956 4089 3.868757 TCGATCATGGGATATCGGTTC 57.131 47.619 12.84 0.00 43.94 3.62
3990 4123 8.061890 ACTTGAGGGGGATTTTTATATCTCAT 57.938 34.615 0.00 0.00 31.35 2.90
4085 4218 3.204526 CATTCCAGCTGAAGCCTCTTAG 58.795 50.000 17.39 0.00 43.38 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.