AutoCloner

Multiple sequence alignment - TraesCS2A01G355800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G355800	chr2A	100.000	3325	0	0	1	3325	598643591	598640267	0.000000e+00	6141.0
1	TraesCS2A01G355800	chr2B	88.670	3398	226	61	34	3325	531052041	531055385	0.000000e+00	3995.0
2	TraesCS2A01G355800	chr2D	91.234	2772	151	32	1	2701	450917082	450919832	0.000000e+00	3688.0
3	TraesCS2A01G355800	chr2D	91.610	584	46	3	2742	3325	450920838	450921418	0.000000e+00	804.0
4	TraesCS2A01G355800	chr7D	86.970	660	80	5	1	657	233198088	233198744	0.000000e+00	737.0
5	TraesCS2A01G355800	chr7D	84.871	661	92	7	2	659	270161983	270161328	0.000000e+00	660.0
6	TraesCS2A01G355800	chr7D	88.095	84	10	0	1412	1495	561757818	561757735	2.110000e-17	100.0
7	TraesCS2A01G355800	chr6A	86.061	660	85	5	1	658	524758001	524758655	0.000000e+00	702.0
8	TraesCS2A01G355800	chr6A	84.743	662	90	8	4	662	572593317	572592664	0.000000e+00	652.0
9	TraesCS2A01G355800	chr5D	85.865	665	87	6	1	662	368844511	368843851	0.000000e+00	701.0
10	TraesCS2A01G355800	chr4D	85.329	668	85	11	1	662	445089412	445088752	0.000000e+00	678.0
11	TraesCS2A01G355800	chr4D	85.315	143	21	0	1082	1224	81666364	81666222	7.430000e-32	148.0
12	TraesCS2A01G355800	chr4D	84.211	76	10	2	1146	1220	394379266	394379192	4.600000e-09	73.1
13	TraesCS2A01G355800	chr7A	85.023	661	91	7	1	657	245605821	245605165	0.000000e+00	665.0
14	TraesCS2A01G355800	chr7A	90.476	84	8	0	1412	1495	646585032	646584949	9.750000e-21	111.0
15	TraesCS2A01G355800	chr7B	84.977	659	93	5	1	657	204667642	204668296	0.000000e+00	664.0
16	TraesCS2A01G355800	chr7B	88.095	84	10	0	1412	1495	610737355	610737272	2.110000e-17	100.0
17	TraesCS2A01G355800	chr1B	85.577	104	15	0	1389	1492	162005930	162005827	3.510000e-20	110.0
18	TraesCS2A01G355800	chr1D	88.636	88	10	0	1389	1476	104543977	104544064	1.260000e-19	108.0
19	TraesCS2A01G355800	chr1A	87.234	94	12	0	1389	1482	107485286	107485193	1.260000e-19	108.0
20	TraesCS2A01G355800	chr5A	86.585	82	9	2	1433	1513	463765622	463765542	4.570000e-14	89.8
21	TraesCS2A01G355800	chr5A	92.308	39	2	1	1193	1230	463765908	463765870	2.000000e-03	54.7
22	TraesCS2A01G355800	chr4A	93.617	47	3	0	1174	1220	75843177	75843131	1.650000e-08	71.3
23	TraesCS2A01G355800	chr3A	93.182	44	1	2	2926	2968	12257247	12257205	2.770000e-06	63.9
24	TraesCS2A01G355800	chr5B	94.286	35	2	0	1193	1227	428963176	428963142	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G355800	chr2A	598640267	598643591	3324	True	6141	6141	100.000	1	3325	1	chr2A.!!$R1	3324
1	TraesCS2A01G355800	chr2B	531052041	531055385	3344	False	3995	3995	88.670	34	3325	1	chr2B.!!$F1	3291
2	TraesCS2A01G355800	chr2D	450917082	450921418	4336	False	2246	3688	91.422	1	3325	2	chr2D.!!$F1	3324
3	TraesCS2A01G355800	chr7D	233198088	233198744	656	False	737	737	86.970	1	657	1	chr7D.!!$F1	656
4	TraesCS2A01G355800	chr7D	270161328	270161983	655	True	660	660	84.871	2	659	1	chr7D.!!$R1	657
5	TraesCS2A01G355800	chr6A	524758001	524758655	654	False	702	702	86.061	1	658	1	chr6A.!!$F1	657
6	TraesCS2A01G355800	chr6A	572592664	572593317	653	True	652	652	84.743	4	662	1	chr6A.!!$R1	658
7	TraesCS2A01G355800	chr5D	368843851	368844511	660	True	701	701	85.865	1	662	1	chr5D.!!$R1	661
8	TraesCS2A01G355800	chr4D	445088752	445089412	660	True	678	678	85.329	1	662	1	chr4D.!!$R3	661
9	TraesCS2A01G355800	chr7A	245605165	245605821	656	True	665	665	85.023	1	657	1	chr7A.!!$R1	656
10	TraesCS2A01G355800	chr7B	204667642	204668296	654	False	664	664	84.977	1	657	1	chr7B.!!$F1	656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
641	647	0.388520	GCCGGTTTGCATGAGTTTCC	60.389	55.0	1.9	0.0	0.0	3.13	F
1952	2024	0.173481	TCTTCGTCAAGGATCGGCTG	59.827	55.0	0.0	0.0	0.0	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2090	2162	0.100861	GGAGGATGGAGTCGTCGAAC	59.899	60.0	0.0	0.0	41.53	3.95	R
3147	4270	1.440145	GCTAGCGATTGCAAGGGTCC	61.440	60.0	7.9	0.0	46.23	4.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
151	153	4.381825	AGCAAGTGCATGAAAAGTTTCACA	60.382	37.500	8.58	1.41	43.31	3.58
174	176	5.008613	CACATAAAAGTACATTGCGCCCTAT	59.991	40.000	4.18	0.00	0.00	2.57
241	244	2.760374	GCTGGCACGCTATCTAGATTT	58.240	47.619	11.25	0.00	0.00	2.17
254	257	4.794278	TCTAGATTTGCGTCACCAAGTA	57.206	40.909	0.00	0.00	0.00	2.24
255	258	4.491676	TCTAGATTTGCGTCACCAAGTAC	58.508	43.478	0.00	0.00	0.00	2.73
272	275	1.126113	GTACTGCAACATGGTTCGTCG	59.874	52.381	0.00	0.00	0.00	5.12
285	288	4.421479	CGTCGGCTCGAGGCAAGT	62.421	66.667	34.57	0.00	44.01	3.16
470	473	1.704628	TGTTGGATGAAGCTGAAGGGA	59.295	47.619	0.00	0.00	0.00	4.20
526	530	5.675684	AAAACTTGTTGGACATCTGGTTT	57.324	34.783	0.00	0.00	0.00	3.27
550	554	6.595772	ATCTAGTCGAATTTGAGACATTGC	57.404	37.500	0.00	0.00	39.67	3.56
589	594	8.549338	TTTACATGTTACGTGTGGATGATTTA	57.451	30.769	19.23	0.00	0.00	1.40
641	647	0.388520	GCCGGTTTGCATGAGTTTCC	60.389	55.000	1.90	0.00	0.00	3.13
664	670	6.589907	TCCTTCGGTTAGTTAAAATACGGAAC	59.410	38.462	0.00	0.00	0.00	3.62
702	726	2.773661	TCCAGCCAGCTGATTAGAATCA	59.226	45.455	21.01	4.92	46.30	2.57
743	784	0.527565	CTTGGGCTTCATTCCGGTTG	59.472	55.000	0.00	0.36	0.00	3.77
747	788	1.304134	GCTTCATTCCGGTTGGGGT	60.304	57.895	0.00	0.00	36.01	4.95
835	878	0.945743	GCATCACACTCACACAGCGA	60.946	55.000	0.00	0.00	0.00	4.93
915	961	7.364149	TGAAATTAGCCCTCATTTATGCAAT	57.636	32.000	0.00	0.00	0.00	3.56
936	982	3.051940	TCCCCATCACTTGCTCTATCT	57.948	47.619	0.00	0.00	0.00	1.98
952	998	5.503357	GCTCTATCTCGAGTTAGTGACACAG	60.503	48.000	25.79	17.43	33.55	3.66
1021	1067	3.744719	CCGACGGCGTCCTTCTGA	61.745	66.667	31.86	0.00	35.23	3.27
1022	1068	2.504244	CGACGGCGTCCTTCTGAC	60.504	66.667	31.86	7.74	40.81	3.51
1023	1069	2.649034	GACGGCGTCCTTCTGACA	59.351	61.111	28.72	0.00	44.71	3.58
1024	1070	1.006571	GACGGCGTCCTTCTGACAA	60.007	57.895	28.72	0.00	44.71	3.18
1025	1071	1.282930	GACGGCGTCCTTCTGACAAC	61.283	60.000	28.72	0.00	44.71	3.32
1026	1072	2.027625	CGGCGTCCTTCTGACAACC	61.028	63.158	0.00	0.00	44.71	3.77
1027	1073	2.027625	GGCGTCCTTCTGACAACCG	61.028	63.158	0.00	0.00	44.71	4.44
1028	1074	2.668280	GCGTCCTTCTGACAACCGC	61.668	63.158	0.00	0.00	44.71	5.68
1029	1075	2.372690	CGTCCTTCTGACAACCGCG	61.373	63.158	0.00	0.00	44.71	6.46
1030	1076	2.357034	TCCTTCTGACAACCGCGC	60.357	61.111	0.00	0.00	0.00	6.86
1049	1095	2.358737	GGCAGCGCTAACACTGGT	60.359	61.111	10.99	0.00	34.38	4.00
1060	1106	3.882131	ACACTGGTGTTCTTGCTGT	57.118	47.368	0.01	0.00	41.83	4.40
1063	1109	2.292267	CACTGGTGTTCTTGCTGTTCT	58.708	47.619	0.00	0.00	0.00	3.01
1237	1292	0.597118	CAGAGTGAGCGCAGATAGCC	60.597	60.000	11.47	0.00	41.38	3.93
1238	1293	1.039785	AGAGTGAGCGCAGATAGCCA	61.040	55.000	11.47	0.00	41.38	4.75
1285	1342	0.818296	GTCGATGTCAGGGTAGCAGT	59.182	55.000	0.00	0.00	0.00	4.40
1289	1357	0.539051	ATGTCAGGGTAGCAGTGAGC	59.461	55.000	0.00	0.00	46.19	4.26
1483	1551	1.361993	GACATCATCGCTCTCGCCT	59.638	57.895	0.00	0.00	35.26	5.52
1643	1715	3.634702	TTGTCTGACGCGCGCCATA	62.635	57.895	32.58	16.12	0.00	2.74
1707	1779	3.103911	GGGCTGTCGTCGAACGTG	61.104	66.667	0.00	0.00	43.14	4.49
1819	1891	2.816087	GTTCTCCTCACAGGTACGTACA	59.184	50.000	26.02	5.33	36.53	2.90
1820	1892	3.361281	TCTCCTCACAGGTACGTACAT	57.639	47.619	26.02	17.76	36.53	2.29
1822	1894	2.011947	TCCTCACAGGTACGTACATCG	58.988	52.381	26.02	15.95	40.09	3.84
1825	1897	1.399440	TCACAGGTACGTACATCGCTC	59.601	52.381	26.02	8.52	44.19	5.03
1828	1900	0.376152	AGGTACGTACATCGCTCACG	59.624	55.000	26.02	0.00	44.19	4.35
1831	1903	3.891786	ACGTACATCGCTCACGTAG	57.108	52.632	0.00	0.00	46.23	3.51
1952	2024	0.173481	TCTTCGTCAAGGATCGGCTG	59.827	55.000	0.00	0.00	0.00	4.85
2063	2135	1.299240	TGACTTCAACACGCGCGTA	60.299	52.632	37.24	18.32	0.00	4.42
2220	2292	2.262915	CGGCGTCTTCCAGCTTCT	59.737	61.111	0.00	0.00	0.00	2.85
2236	2308	0.881118	TTCTCGCAGGATTTTGTGGC	59.119	50.000	0.00	0.00	0.00	5.01
2303	2375	1.683629	GGGGAGATCAGAGACGAGTGT	60.684	57.143	0.00	0.00	0.00	3.55
2438	2514	8.593945	TTAAGTAAATTGGCATGATTTCTCCT	57.406	30.769	0.00	0.00	0.00	3.69
2439	2515	6.705863	AGTAAATTGGCATGATTTCTCCTC	57.294	37.500	0.00	0.00	0.00	3.71
2441	2517	5.593679	AAATTGGCATGATTTCTCCTCTG	57.406	39.130	0.00	0.00	0.00	3.35
2442	2518	3.726557	TTGGCATGATTTCTCCTCTGT	57.273	42.857	0.00	0.00	0.00	3.41
2443	2519	4.842531	TTGGCATGATTTCTCCTCTGTA	57.157	40.909	0.00	0.00	0.00	2.74
2444	2520	5.378230	TTGGCATGATTTCTCCTCTGTAT	57.622	39.130	0.00	0.00	0.00	2.29
2456	2553	3.189606	TCCTCTGTATGTGGTGGGATTT	58.810	45.455	0.00	0.00	0.00	2.17
2477	2574	7.869429	GGATTTAGATTGCATTTTCATCGGATT	59.131	33.333	0.00	0.00	0.00	3.01
2539	2643	4.493545	GCAAGAACATGCAGCAATTAATGC	60.494	41.667	0.00	7.69	46.21	3.56
2556	2660	2.897780	GCGCAATGCAAAGGAAACA	58.102	47.368	5.91	0.00	45.45	2.83
2637	2745	3.495001	GGTTTGAGCTGTCTATATTCGGC	59.505	47.826	0.00	0.00	36.34	5.54
2719	3513	6.818644	GTGTACTCCAACTGTGTCATAATCAT	59.181	38.462	0.00	0.00	0.00	2.45
2883	3995	7.589221	GCTAAAAATACTGAATAGATGCAGTGC	59.411	37.037	12.69	8.58	44.47	4.40
3048	4167	5.417811	TGCCAAAATTTGCATGGTGTATAG	58.582	37.500	8.76	0.00	36.57	1.31
3049	4168	5.046735	TGCCAAAATTTGCATGGTGTATAGT	60.047	36.000	8.76	0.00	36.57	2.12
3128	4251	8.257306	ACATGTTCTTGTAAAACCAAAACTCAT	58.743	29.630	0.00	0.00	0.00	2.90
3141	4264	9.671279	AAACCAAAACTCATTGAAATCTTTCTT	57.329	25.926	4.46	0.00	38.02	2.52
3205	4328	2.414806	GACGGGTGTTTCTCTTCCTTC	58.585	52.381	0.00	0.00	0.00	3.46
3222	4345	3.260632	TCCTTCAAGACCACATCATCGAA	59.739	43.478	0.00	0.00	0.00	3.71
3229	4352	3.452264	AGACCACATCATCGAAATCCTCA	59.548	43.478	0.00	0.00	0.00	3.86
3233	4356	2.168521	ACATCATCGAAATCCTCACGGT	59.831	45.455	0.00	0.00	0.00	4.83
3285	4408	2.674380	CTTCTGCACACCCAGCCC	60.674	66.667	0.00	0.00	32.87	5.19
3299	4422	1.452651	AGCCCAACCAGATGCATCG	60.453	57.895	20.67	14.92	0.00	3.84
3300	4423	1.451927	GCCCAACCAGATGCATCGA	60.452	57.895	20.67	0.00	0.00	3.59
3307	4430	2.350522	ACCAGATGCATCGAAAGTCAC	58.649	47.619	20.67	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	1.067821	CGAGTAGCTCACCATCCTTCC	59.932	57.143	0.00	0.00	0.00	3.46
151	153	3.352648	AGGGCGCAATGTACTTTTATGT	58.647	40.909	10.83	0.00	0.00	2.29
155	157	4.944930	TGTTATAGGGCGCAATGTACTTTT	59.055	37.500	10.83	0.00	0.00	2.27
174	176	7.824672	TGCATTGTTGAATGATGTACATGTTA	58.175	30.769	14.43	0.00	41.49	2.41
241	244	0.179070	TTGCAGTACTTGGTGACGCA	60.179	50.000	0.00	0.00	0.00	5.24
254	257	1.227999	CCGACGAACCATGTTGCAGT	61.228	55.000	0.00	0.00	0.00	4.40
255	258	1.497278	CCGACGAACCATGTTGCAG	59.503	57.895	0.00	0.00	0.00	4.41
272	275	3.435186	GCCAACTTGCCTCGAGCC	61.435	66.667	6.99	0.00	42.71	4.70
470	473	0.901827	TGTCGTCCCATGCATACTGT	59.098	50.000	0.00	0.00	0.00	3.55
526	530	7.436376	CAGCAATGTCTCAAATTCGACTAGATA	59.564	37.037	0.00	0.00	0.00	1.98
620	626	1.815817	AAACTCATGCAAACCGGCCC	61.816	55.000	0.00	0.00	0.00	5.80
641	647	6.089417	ACGTTCCGTATTTTAACTAACCGAAG	59.911	38.462	0.00	0.00	38.73	3.79
702	726	6.670695	AGGTTCTGGTTATTTGCAGAAAAT	57.329	33.333	0.00	0.00	41.47	1.82
743	784	0.613777	ATTGGAGACGTCTCAACCCC	59.386	55.000	38.52	25.87	44.60	4.95
747	788	1.201647	GTCGGATTGGAGACGTCTCAA	59.798	52.381	38.52	30.17	44.60	3.02
835	878	3.118112	CAGTATGGGGAGCTTGTCTTCAT	60.118	47.826	0.00	0.00	0.00	2.57
915	961	3.387962	AGATAGAGCAAGTGATGGGGAA	58.612	45.455	0.00	0.00	0.00	3.97
936	982	6.525578	AATATTCCTGTGTCACTAACTCGA	57.474	37.500	4.27	0.00	0.00	4.04
1030	1076	3.490759	CAGTGTTAGCGCTGCCGG	61.491	66.667	22.90	0.00	44.83	6.13
1045	1091	2.032549	CGAAGAACAGCAAGAACACCAG	60.033	50.000	0.00	0.00	0.00	4.00
1049	1095	0.944386	GCCGAAGAACAGCAAGAACA	59.056	50.000	0.00	0.00	0.00	3.18
1054	1100	3.353836	GGCGCCGAAGAACAGCAA	61.354	61.111	12.58	0.00	0.00	3.91
1086	1141	1.286849	TCGGAGTAGAACCCCATCTGA	59.713	52.381	0.00	0.00	0.00	3.27
1251	1306	0.735978	TCGACACGGCTAACTGCATG	60.736	55.000	0.00	0.00	45.15	4.06
1285	1342	1.432514	GCACTTGAATCACTCGCTCA	58.567	50.000	0.00	0.00	0.00	4.26
1289	1357	0.439985	CCACGCACTTGAATCACTCG	59.560	55.000	0.00	0.00	0.00	4.18
1483	1551	4.865761	GGCTATGGCGTCGCGTGA	62.866	66.667	11.75	0.00	39.81	4.35
1845	1917	3.716006	AGCGTGTGACGTGCATGC	61.716	61.111	20.11	20.11	44.73	4.06
1952	2024	1.153628	CGGCAGTGGGTAGCTGTAC	60.154	63.158	0.00	0.00	36.42	2.90
2045	2117	1.299240	TACGCGCGTGTTGAAGTCA	60.299	52.632	42.78	19.17	0.00	3.41
2090	2162	0.100861	GGAGGATGGAGTCGTCGAAC	59.899	60.000	0.00	0.00	41.53	3.95
2220	2292	2.331893	CGGCCACAAAATCCTGCGA	61.332	57.895	2.24	0.00	0.00	5.10
2236	2308	1.521450	GCCCATCTTGATCATGGCGG	61.521	60.000	8.14	8.68	39.78	6.13
2367	2440	6.381481	TTCCGCGAGAGATTTACAGTAATA	57.619	37.500	8.23	0.00	0.00	0.98
2434	2510	1.866015	TCCCACCACATACAGAGGAG	58.134	55.000	0.00	0.00	0.00	3.69
2436	2512	3.652057	AAATCCCACCACATACAGAGG	57.348	47.619	0.00	0.00	0.00	3.69
2438	2514	6.356556	CAATCTAAATCCCACCACATACAGA	58.643	40.000	0.00	0.00	0.00	3.41
2439	2515	5.009010	GCAATCTAAATCCCACCACATACAG	59.991	44.000	0.00	0.00	0.00	2.74
2441	2517	4.887071	TGCAATCTAAATCCCACCACATAC	59.113	41.667	0.00	0.00	0.00	2.39
2442	2518	5.122707	TGCAATCTAAATCCCACCACATA	57.877	39.130	0.00	0.00	0.00	2.29
2443	2519	3.979911	TGCAATCTAAATCCCACCACAT	58.020	40.909	0.00	0.00	0.00	3.21
2444	2520	3.448093	TGCAATCTAAATCCCACCACA	57.552	42.857	0.00	0.00	0.00	4.17
2456	2553	6.511605	CGTCAATCCGATGAAAATGCAATCTA	60.512	38.462	0.00	0.00	31.67	1.98
2477	2574	2.867287	TGTTAACAACTCGTCCGTCA	57.133	45.000	5.64	0.00	0.00	4.35
2539	2643	3.940657	TTTTGTTTCCTTTGCATTGCG	57.059	38.095	3.84	0.00	0.00	4.85
2550	2654	6.420604	TCATCTTTTCTGCGATTTTTGTTTCC	59.579	34.615	0.00	0.00	0.00	3.13
2555	2659	7.201410	CCATTCTCATCTTTTCTGCGATTTTTG	60.201	37.037	0.00	0.00	0.00	2.44
2556	2660	6.810182	CCATTCTCATCTTTTCTGCGATTTTT	59.190	34.615	0.00	0.00	0.00	1.94
2637	2745	3.621268	TCCTTGAGAACATTAAATCGGCG	59.379	43.478	0.00	0.00	0.00	6.46
2719	3513	2.734276	TTGTAGTACTGTGCGATGCA	57.266	45.000	5.39	0.00	35.60	3.96
2927	4039	8.999431	CCTAAGTTTTGAGTAATGCAGAAGTTA	58.001	33.333	0.00	0.00	29.35	2.24
2929	4041	7.224297	TCCTAAGTTTTGAGTAATGCAGAAGT	58.776	34.615	0.00	0.00	0.00	3.01
2930	4042	7.672983	TCCTAAGTTTTGAGTAATGCAGAAG	57.327	36.000	0.00	0.00	0.00	2.85
3083	4206	5.893255	ACATGTGTAATGCATGGGATTTACT	59.107	36.000	0.00	0.00	45.68	2.24
3084	4207	6.147864	ACATGTGTAATGCATGGGATTTAC	57.852	37.500	0.00	0.00	45.68	2.01
3128	4251	7.413446	AGGGTCCATATGAAGAAAGATTTCAA	58.587	34.615	3.65	0.00	38.01	2.69
3141	4264	2.849942	CGATTGCAAGGGTCCATATGA	58.150	47.619	4.94	0.00	0.00	2.15
3147	4270	1.440145	GCTAGCGATTGCAAGGGTCC	61.440	60.000	7.90	0.00	46.23	4.46
3190	4313	4.273724	GTGGTCTTGAAGGAAGAGAAACAC	59.726	45.833	0.00	0.00	41.58	3.32
3205	4328	4.194640	AGGATTTCGATGATGTGGTCTTG	58.805	43.478	0.00	0.00	0.00	3.02
3233	4356	4.082523	GGCTAGTGCTCCGGTGCA	62.083	66.667	26.46	26.46	41.05	4.57
3244	4367	3.823873	CGACCTATGATGAAGAGGCTAGT	59.176	47.826	0.00	0.00	33.28	2.57
3285	4408	2.743664	TGACTTTCGATGCATCTGGTTG	59.256	45.455	23.73	8.54	0.00	3.77
3299	4422	4.266157	GGTTTTGTTACGTCGTGACTTTC	58.734	43.478	19.44	8.63	0.00	2.62
3300	4423	3.063861	GGGTTTTGTTACGTCGTGACTTT	59.936	43.478	19.44	0.00	0.00	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.