Multiple sequence alignment - TraesCS2A01G354400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G354400 chr2A 100.000 4842 0 0 1 4842 595231280 595226439 0.000000e+00 8942.0
1 TraesCS2A01G354400 chr2A 85.714 161 21 2 73 232 753674963 753674804 8.330000e-38 169.0
2 TraesCS2A01G354400 chr2B 92.293 3166 134 25 227 3315 536615696 536618828 0.000000e+00 4394.0
3 TraesCS2A01G354400 chr2B 92.500 840 23 7 3385 4205 536618819 536619637 0.000000e+00 1166.0
4 TraesCS2A01G354400 chr2B 90.337 445 34 3 4316 4757 536619653 536620091 4.200000e-160 575.0
5 TraesCS2A01G354400 chr2B 84.756 164 20 4 75 236 212938050 212937890 5.020000e-35 159.0
6 TraesCS2A01G354400 chr2D 92.040 3128 154 35 227 3315 455513686 455516757 0.000000e+00 4309.0
7 TraesCS2A01G354400 chr2D 96.118 541 18 2 3388 3928 455516750 455517287 0.000000e+00 880.0
8 TraesCS2A01G354400 chr2D 89.792 529 37 10 4316 4842 455517534 455518047 0.000000e+00 662.0
9 TraesCS2A01G354400 chr2D 95.041 121 4 2 3941 4060 455517335 455517454 6.400000e-44 189.0
10 TraesCS2A01G354400 chr2D 94.737 57 3 0 4149 4205 455517462 455517518 6.670000e-14 89.8
11 TraesCS2A01G354400 chr4D 90.295 237 20 2 2 235 374085638 374085402 1.690000e-79 307.0
12 TraesCS2A01G354400 chr4D 85.507 69 10 0 1382 1450 323118501 323118433 6.720000e-09 73.1
13 TraesCS2A01G354400 chr3D 90.090 222 20 1 8 227 103367513 103367292 2.210000e-73 287.0
14 TraesCS2A01G354400 chr3D 95.652 46 1 1 3318 3362 435837330 435837285 6.720000e-09 73.1
15 TraesCS2A01G354400 chr6A 86.624 157 19 2 73 228 592707620 592707775 6.440000e-39 172.0
16 TraesCS2A01G354400 chr6A 88.710 124 11 3 114 236 579100465 579100586 1.090000e-31 148.0
17 TraesCS2A01G354400 chr7B 85.443 158 21 2 73 229 19529121 19528965 3.880000e-36 163.0
18 TraesCS2A01G354400 chr4B 87.770 139 12 2 2 139 630387454 630387320 1.800000e-34 158.0
19 TraesCS2A01G354400 chr4B 85.507 69 10 0 1382 1450 403274758 403274690 6.720000e-09 73.1
20 TraesCS2A01G354400 chr5B 87.050 139 13 2 2 139 617251751 617251885 8.390000e-33 152.0
21 TraesCS2A01G354400 chr5B 97.619 42 1 0 3321 3362 700368083 700368042 6.720000e-09 73.1
22 TraesCS2A01G354400 chr5B 100.000 36 0 0 2156 2191 352218852 352218887 3.130000e-07 67.6
23 TraesCS2A01G354400 chr7A 85.315 143 21 0 91 233 732511427 732511569 1.090000e-31 148.0
24 TraesCS2A01G354400 chr7A 97.561 41 1 0 3322 3362 279464976 279464936 2.420000e-08 71.3
25 TraesCS2A01G354400 chr7A 97.561 41 1 0 3322 3362 496055613 496055573 2.420000e-08 71.3
26 TraesCS2A01G354400 chr7A 97.222 36 1 0 2156 2191 498450900 498450865 1.460000e-05 62.1
27 TraesCS2A01G354400 chr7A 100.000 33 0 0 2156 2188 655765291 655765323 1.460000e-05 62.1
28 TraesCS2A01G354400 chr5A 82.166 157 24 4 73 227 363421022 363420868 1.090000e-26 132.0
29 TraesCS2A01G354400 chr4A 85.507 69 10 0 1382 1450 149028112 149028180 6.720000e-09 73.1
30 TraesCS2A01G354400 chr4A 97.619 42 1 0 3321 3362 620238833 620238792 6.720000e-09 73.1
31 TraesCS2A01G354400 chr6D 97.500 40 1 0 3323 3362 342383657 342383696 8.700000e-08 69.4
32 TraesCS2A01G354400 chr6B 89.286 56 5 1 1396 1450 30354954 30355009 8.700000e-08 69.4
33 TraesCS2A01G354400 chr6B 100.000 36 0 0 2156 2191 72153983 72154018 3.130000e-07 67.6
34 TraesCS2A01G354400 chr6B 86.207 58 8 0 1393 1450 30490891 30490948 4.050000e-06 63.9
35 TraesCS2A01G354400 chr3B 100.000 36 0 0 2156 2191 512039392 512039427 3.130000e-07 67.6
36 TraesCS2A01G354400 chr3B 95.122 41 2 0 3322 3362 260191891 260191851 1.120000e-06 65.8
37 TraesCS2A01G354400 chr3A 97.436 39 1 0 2156 2194 191042008 191041970 3.130000e-07 67.6
38 TraesCS2A01G354400 chr7D 94.872 39 2 0 1412 1450 614679912 614679874 1.460000e-05 62.1
39 TraesCS2A01G354400 chr7D 97.222 36 1 0 1415 1450 614928557 614928592 1.460000e-05 62.1
40 TraesCS2A01G354400 chr1B 100.000 31 0 0 2158 2188 144661000 144661030 1.880000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G354400 chr2A 595226439 595231280 4841 True 8942.00 8942 100.0000 1 4842 1 chr2A.!!$R1 4841
1 TraesCS2A01G354400 chr2B 536615696 536620091 4395 False 2045.00 4394 91.7100 227 4757 3 chr2B.!!$F1 4530
2 TraesCS2A01G354400 chr2D 455513686 455518047 4361 False 1225.96 4309 93.5456 227 4842 5 chr2D.!!$F1 4615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.038166 TGTGTTGATGAGGGGGCTTC 59.962 55.0 0.00 0.00 0.00 3.86 F
95 96 0.179121 CCACGTAAGCGCAGGATACA 60.179 55.0 11.47 0.00 42.83 2.29 F
135 136 0.247145 CCGTATTTGCACGAGAACGC 60.247 55.0 0.00 0.00 44.69 4.84 F
136 137 0.436913 CGTATTTGCACGAGAACGCA 59.563 50.0 0.00 0.00 44.69 5.24 F
1026 1051 0.458543 ACGCATGGTGATGTCTCGTC 60.459 55.0 0.00 0.00 31.50 4.20 F
2131 2194 0.100146 CAGACGTAGGAAGTACCGCC 59.900 60.0 0.00 0.00 44.74 6.13 F
2195 2258 0.319986 TGGTGATTGTCGCTGCGTAA 60.320 50.0 22.48 17.78 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 1796 0.179134 CTCCGGGAGAAACTGCGTAG 60.179 60.000 19.57 0.00 0.00 3.51 R
1815 1848 4.274705 ACAGCGATTACAAATGTGACACAA 59.725 37.500 13.23 0.00 0.00 3.33 R
2116 2179 0.179145 CACAGGCGGTACTTCCTACG 60.179 60.000 6.21 0.00 0.00 3.51 R
2131 2194 1.134759 CCTCTGATGAGAGCCACACAG 60.135 57.143 3.27 0.00 44.11 3.66 R
2849 2923 0.309922 TCGAGAGAAACGCGACTGTT 59.690 50.000 15.93 0.09 44.80 3.16 R
3616 3699 0.389817 GTGGCTCTACGCACATGTCA 60.390 55.000 0.00 0.00 41.67 3.58 R
4133 4255 4.396166 CGTTGGAATGAAGCATTAAGGAGT 59.604 41.667 0.00 0.00 33.90 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.595311 TATGTGTTGATGAGGGGGCT 58.405 50.000 0.00 0.00 0.00 5.19
20 21 0.706433 ATGTGTTGATGAGGGGGCTT 59.294 50.000 0.00 0.00 0.00 4.35
21 22 0.038166 TGTGTTGATGAGGGGGCTTC 59.962 55.000 0.00 0.00 0.00 3.86
22 23 0.329596 GTGTTGATGAGGGGGCTTCT 59.670 55.000 0.00 0.00 0.00 2.85
23 24 0.329261 TGTTGATGAGGGGGCTTCTG 59.671 55.000 0.00 0.00 0.00 3.02
24 25 0.329596 GTTGATGAGGGGGCTTCTGT 59.670 55.000 0.00 0.00 0.00 3.41
25 26 0.329261 TTGATGAGGGGGCTTCTGTG 59.671 55.000 0.00 0.00 0.00 3.66
26 27 1.452833 GATGAGGGGGCTTCTGTGC 60.453 63.158 0.00 0.00 0.00 4.57
27 28 2.202236 GATGAGGGGGCTTCTGTGCA 62.202 60.000 0.00 0.00 34.04 4.57
28 29 1.792757 ATGAGGGGGCTTCTGTGCAA 61.793 55.000 0.00 0.00 34.04 4.08
29 30 1.000396 GAGGGGGCTTCTGTGCAAT 60.000 57.895 0.00 0.00 34.04 3.56
30 31 0.613012 GAGGGGGCTTCTGTGCAATT 60.613 55.000 0.00 0.00 34.04 2.32
31 32 0.704076 AGGGGGCTTCTGTGCAATTA 59.296 50.000 0.00 0.00 34.04 1.40
32 33 1.077005 AGGGGGCTTCTGTGCAATTAA 59.923 47.619 0.00 0.00 34.04 1.40
33 34 1.899142 GGGGGCTTCTGTGCAATTAAA 59.101 47.619 0.00 0.00 34.04 1.52
34 35 2.301583 GGGGGCTTCTGTGCAATTAAAA 59.698 45.455 0.00 0.00 34.04 1.52
35 36 3.244387 GGGGGCTTCTGTGCAATTAAAAA 60.244 43.478 0.00 0.00 34.04 1.94
36 37 3.745975 GGGGCTTCTGTGCAATTAAAAAC 59.254 43.478 0.00 0.00 34.04 2.43
37 38 4.376146 GGGCTTCTGTGCAATTAAAAACA 58.624 39.130 0.00 0.00 34.04 2.83
38 39 4.813697 GGGCTTCTGTGCAATTAAAAACAA 59.186 37.500 0.00 0.00 34.04 2.83
39 40 5.295540 GGGCTTCTGTGCAATTAAAAACAAA 59.704 36.000 0.00 0.00 34.04 2.83
40 41 6.421405 GGCTTCTGTGCAATTAAAAACAAAG 58.579 36.000 0.00 0.00 34.04 2.77
41 42 5.903530 GCTTCTGTGCAATTAAAAACAAAGC 59.096 36.000 0.00 0.00 33.69 3.51
42 43 6.456718 GCTTCTGTGCAATTAAAAACAAAGCA 60.457 34.615 0.00 0.00 37.04 3.91
43 44 6.586868 TCTGTGCAATTAAAAACAAAGCAG 57.413 33.333 0.00 0.00 0.00 4.24
44 45 5.523188 TCTGTGCAATTAAAAACAAAGCAGG 59.477 36.000 0.00 0.00 0.00 4.85
45 46 4.574013 TGTGCAATTAAAAACAAAGCAGGG 59.426 37.500 0.00 0.00 0.00 4.45
46 47 4.024133 GTGCAATTAAAAACAAAGCAGGGG 60.024 41.667 0.00 0.00 0.00 4.79
47 48 4.133820 GCAATTAAAAACAAAGCAGGGGT 58.866 39.130 0.00 0.00 0.00 4.95
48 49 4.024133 GCAATTAAAAACAAAGCAGGGGTG 60.024 41.667 0.00 0.00 0.00 4.61
49 50 5.122519 CAATTAAAAACAAAGCAGGGGTGT 58.877 37.500 0.00 0.00 0.00 4.16
50 51 4.828072 TTAAAAACAAAGCAGGGGTGTT 57.172 36.364 0.00 0.00 37.07 3.32
51 52 3.712016 AAAAACAAAGCAGGGGTGTTT 57.288 38.095 0.00 0.00 45.04 2.83
52 53 2.979814 AAACAAAGCAGGGGTGTTTC 57.020 45.000 0.00 0.00 40.53 2.78
53 54 0.744281 AACAAAGCAGGGGTGTTTCG 59.256 50.000 0.00 0.00 31.52 3.46
54 55 1.106944 ACAAAGCAGGGGTGTTTCGG 61.107 55.000 0.00 0.00 0.00 4.30
55 56 1.106944 CAAAGCAGGGGTGTTTCGGT 61.107 55.000 0.00 0.00 0.00 4.69
56 57 0.475044 AAAGCAGGGGTGTTTCGGTA 59.525 50.000 0.00 0.00 0.00 4.02
57 58 0.475044 AAGCAGGGGTGTTTCGGTAA 59.525 50.000 0.00 0.00 0.00 2.85
58 59 0.475044 AGCAGGGGTGTTTCGGTAAA 59.525 50.000 0.00 0.00 0.00 2.01
59 60 1.133730 AGCAGGGGTGTTTCGGTAAAA 60.134 47.619 0.00 0.00 0.00 1.52
60 61 1.682323 GCAGGGGTGTTTCGGTAAAAA 59.318 47.619 0.00 0.00 0.00 1.94
80 81 3.848272 AATGGTTTTAGTCATGCCACG 57.152 42.857 0.00 0.00 31.47 4.94
81 82 2.264005 TGGTTTTAGTCATGCCACGT 57.736 45.000 0.00 0.00 0.00 4.49
82 83 3.404224 TGGTTTTAGTCATGCCACGTA 57.596 42.857 0.00 0.00 0.00 3.57
83 84 3.741249 TGGTTTTAGTCATGCCACGTAA 58.259 40.909 0.00 0.00 0.00 3.18
85 86 3.425758 GGTTTTAGTCATGCCACGTAAGC 60.426 47.826 2.88 2.88 45.62 3.09
86 87 1.635844 TTAGTCATGCCACGTAAGCG 58.364 50.000 5.39 0.00 45.62 4.68
87 88 0.804544 TAGTCATGCCACGTAAGCGC 60.805 55.000 0.00 0.00 42.83 5.92
91 92 3.997397 TGCCACGTAAGCGCAGGA 61.997 61.111 11.47 0.00 40.52 3.86
92 93 2.511600 GCCACGTAAGCGCAGGAT 60.512 61.111 11.47 0.00 42.83 3.24
93 94 1.227147 GCCACGTAAGCGCAGGATA 60.227 57.895 11.47 0.00 42.83 2.59
94 95 1.488261 GCCACGTAAGCGCAGGATAC 61.488 60.000 11.47 6.39 42.83 2.24
95 96 0.179121 CCACGTAAGCGCAGGATACA 60.179 55.000 11.47 0.00 42.83 2.29
96 97 1.538204 CCACGTAAGCGCAGGATACAT 60.538 52.381 11.47 0.00 42.83 2.29
97 98 1.787155 CACGTAAGCGCAGGATACATC 59.213 52.381 11.47 0.00 42.83 3.06
98 99 1.269621 ACGTAAGCGCAGGATACATCC 60.270 52.381 11.47 0.00 43.93 3.51
99 100 4.769525 ACGTAAGCGCAGGATACATCCG 62.770 54.545 11.47 0.00 46.28 4.18
125 126 4.647291 CGGATAAGATGACCGTATTTGC 57.353 45.455 0.00 0.00 41.47 3.68
126 127 4.055360 CGGATAAGATGACCGTATTTGCA 58.945 43.478 0.00 0.00 41.47 4.08
127 128 4.084537 CGGATAAGATGACCGTATTTGCAC 60.085 45.833 0.00 0.00 41.47 4.57
128 129 4.084537 GGATAAGATGACCGTATTTGCACG 60.085 45.833 0.00 0.00 41.59 5.34
129 130 2.665649 AGATGACCGTATTTGCACGA 57.334 45.000 0.00 0.00 44.69 4.35
130 131 2.540515 AGATGACCGTATTTGCACGAG 58.459 47.619 0.00 0.00 44.69 4.18
131 132 2.165641 AGATGACCGTATTTGCACGAGA 59.834 45.455 0.00 0.00 44.69 4.04
132 133 2.442212 TGACCGTATTTGCACGAGAA 57.558 45.000 0.00 0.00 44.69 2.87
133 134 2.063266 TGACCGTATTTGCACGAGAAC 58.937 47.619 0.00 0.00 44.69 3.01
134 135 1.058695 GACCGTATTTGCACGAGAACG 59.941 52.381 0.00 0.00 44.69 3.95
135 136 0.247145 CCGTATTTGCACGAGAACGC 60.247 55.000 0.00 0.00 44.69 4.84
136 137 0.436913 CGTATTTGCACGAGAACGCA 59.563 50.000 0.00 0.00 44.69 5.24
137 138 1.136474 CGTATTTGCACGAGAACGCAA 60.136 47.619 0.00 0.00 45.93 4.85
156 157 5.505286 CGCAAGTTAGATGATCACAAATCC 58.495 41.667 0.00 0.00 0.00 3.01
157 158 5.505286 GCAAGTTAGATGATCACAAATCCG 58.495 41.667 0.00 0.00 0.00 4.18
158 159 5.065218 GCAAGTTAGATGATCACAAATCCGT 59.935 40.000 0.00 0.00 0.00 4.69
159 160 6.257849 GCAAGTTAGATGATCACAAATCCGTA 59.742 38.462 0.00 0.00 0.00 4.02
160 161 7.041780 GCAAGTTAGATGATCACAAATCCGTAT 60.042 37.037 0.00 0.00 0.00 3.06
161 162 8.830580 CAAGTTAGATGATCACAAATCCGTATT 58.169 33.333 0.00 0.00 0.00 1.89
162 163 8.964476 AGTTAGATGATCACAAATCCGTATTT 57.036 30.769 0.00 0.00 35.65 1.40
163 164 9.396022 AGTTAGATGATCACAAATCCGTATTTT 57.604 29.630 0.00 0.00 32.87 1.82
164 165 9.651718 GTTAGATGATCACAAATCCGTATTTTC 57.348 33.333 0.00 0.00 32.87 2.29
165 166 7.864108 AGATGATCACAAATCCGTATTTTCA 57.136 32.000 0.00 0.00 32.87 2.69
166 167 8.279970 AGATGATCACAAATCCGTATTTTCAA 57.720 30.769 0.00 0.00 32.87 2.69
167 168 8.739039 AGATGATCACAAATCCGTATTTTCAAA 58.261 29.630 0.00 0.00 32.87 2.69
168 169 8.915871 ATGATCACAAATCCGTATTTTCAAAG 57.084 30.769 0.00 0.00 32.87 2.77
169 170 7.881142 TGATCACAAATCCGTATTTTCAAAGT 58.119 30.769 0.00 0.00 32.87 2.66
170 171 8.356657 TGATCACAAATCCGTATTTTCAAAGTT 58.643 29.630 0.00 0.00 32.87 2.66
171 172 8.742554 ATCACAAATCCGTATTTTCAAAGTTC 57.257 30.769 0.00 0.00 32.87 3.01
172 173 7.936584 TCACAAATCCGTATTTTCAAAGTTCT 58.063 30.769 0.00 0.00 32.87 3.01
173 174 9.058174 TCACAAATCCGTATTTTCAAAGTTCTA 57.942 29.630 0.00 0.00 32.87 2.10
174 175 9.329913 CACAAATCCGTATTTTCAAAGTTCTAG 57.670 33.333 0.00 0.00 32.87 2.43
175 176 8.021396 ACAAATCCGTATTTTCAAAGTTCTAGC 58.979 33.333 0.00 0.00 32.87 3.42
176 177 7.681939 AATCCGTATTTTCAAAGTTCTAGCA 57.318 32.000 0.00 0.00 0.00 3.49
177 178 6.476243 TCCGTATTTTCAAAGTTCTAGCAC 57.524 37.500 0.00 0.00 0.00 4.40
178 179 5.410439 TCCGTATTTTCAAAGTTCTAGCACC 59.590 40.000 0.00 0.00 0.00 5.01
179 180 5.180492 CCGTATTTTCAAAGTTCTAGCACCA 59.820 40.000 0.00 0.00 0.00 4.17
180 181 6.293735 CCGTATTTTCAAAGTTCTAGCACCAA 60.294 38.462 0.00 0.00 0.00 3.67
181 182 7.136119 CGTATTTTCAAAGTTCTAGCACCAAA 58.864 34.615 0.00 0.00 0.00 3.28
182 183 7.112984 CGTATTTTCAAAGTTCTAGCACCAAAC 59.887 37.037 0.00 0.00 0.00 2.93
183 184 6.524101 TTTTCAAAGTTCTAGCACCAAACT 57.476 33.333 0.00 0.00 34.81 2.66
184 185 5.499139 TTCAAAGTTCTAGCACCAAACTG 57.501 39.130 0.00 0.00 33.68 3.16
185 186 4.776349 TCAAAGTTCTAGCACCAAACTGA 58.224 39.130 0.00 0.00 33.68 3.41
186 187 5.189928 TCAAAGTTCTAGCACCAAACTGAA 58.810 37.500 0.00 0.00 33.68 3.02
187 188 5.065988 TCAAAGTTCTAGCACCAAACTGAAC 59.934 40.000 0.00 0.00 33.68 3.18
188 189 4.150897 AGTTCTAGCACCAAACTGAACA 57.849 40.909 0.00 0.00 37.03 3.18
189 190 4.718961 AGTTCTAGCACCAAACTGAACAT 58.281 39.130 0.00 0.00 37.03 2.71
190 191 4.757149 AGTTCTAGCACCAAACTGAACATC 59.243 41.667 0.00 0.00 37.03 3.06
191 192 3.674997 TCTAGCACCAAACTGAACATCC 58.325 45.455 0.00 0.00 0.00 3.51
192 193 2.363306 AGCACCAAACTGAACATCCA 57.637 45.000 0.00 0.00 0.00 3.41
193 194 2.233271 AGCACCAAACTGAACATCCAG 58.767 47.619 0.00 0.00 39.93 3.86
194 195 1.336240 GCACCAAACTGAACATCCAGC 60.336 52.381 0.00 0.00 37.68 4.85
195 196 1.069022 CACCAAACTGAACATCCAGCG 60.069 52.381 0.00 0.00 37.68 5.18
196 197 1.238439 CCAAACTGAACATCCAGCGT 58.762 50.000 0.00 0.00 37.68 5.07
197 198 2.224426 ACCAAACTGAACATCCAGCGTA 60.224 45.455 0.00 0.00 37.68 4.42
198 199 2.811431 CCAAACTGAACATCCAGCGTAA 59.189 45.455 0.00 0.00 37.68 3.18
199 200 3.120199 CCAAACTGAACATCCAGCGTAAG 60.120 47.826 0.00 0.00 37.68 2.34
200 201 3.402628 AACTGAACATCCAGCGTAAGT 57.597 42.857 0.00 0.00 37.68 2.24
201 202 3.402628 ACTGAACATCCAGCGTAAGTT 57.597 42.857 0.00 0.00 37.68 2.66
202 203 4.530710 ACTGAACATCCAGCGTAAGTTA 57.469 40.909 0.00 0.00 37.68 2.24
203 204 5.086104 ACTGAACATCCAGCGTAAGTTAT 57.914 39.130 0.00 0.00 37.68 1.89
204 205 6.216801 ACTGAACATCCAGCGTAAGTTATA 57.783 37.500 0.00 0.00 37.68 0.98
205 206 6.817184 ACTGAACATCCAGCGTAAGTTATAT 58.183 36.000 0.00 0.00 37.68 0.86
206 207 6.701841 ACTGAACATCCAGCGTAAGTTATATG 59.298 38.462 0.00 0.00 37.68 1.78
207 208 6.811954 TGAACATCCAGCGTAAGTTATATGA 58.188 36.000 0.00 0.00 41.68 2.15
208 209 6.700081 TGAACATCCAGCGTAAGTTATATGAC 59.300 38.462 0.00 0.00 41.68 3.06
209 210 5.539048 ACATCCAGCGTAAGTTATATGACC 58.461 41.667 0.00 0.00 41.68 4.02
210 211 5.304614 ACATCCAGCGTAAGTTATATGACCT 59.695 40.000 0.00 0.00 41.68 3.85
211 212 5.449107 TCCAGCGTAAGTTATATGACCTC 57.551 43.478 0.00 0.00 41.68 3.85
212 213 4.280174 TCCAGCGTAAGTTATATGACCTCC 59.720 45.833 0.00 0.00 41.68 4.30
213 214 4.227538 CAGCGTAAGTTATATGACCTCCG 58.772 47.826 0.00 0.00 41.68 4.63
214 215 3.255149 AGCGTAAGTTATATGACCTCCGG 59.745 47.826 0.00 0.00 41.68 5.14
215 216 3.005155 GCGTAAGTTATATGACCTCCGGT 59.995 47.826 0.00 0.00 38.23 5.28
216 217 4.543692 CGTAAGTTATATGACCTCCGGTG 58.456 47.826 0.00 0.00 35.25 4.94
217 218 4.276678 CGTAAGTTATATGACCTCCGGTGA 59.723 45.833 4.76 0.00 35.25 4.02
218 219 5.048224 CGTAAGTTATATGACCTCCGGTGAT 60.048 44.000 4.76 0.00 35.25 3.06
219 220 6.149973 CGTAAGTTATATGACCTCCGGTGATA 59.850 42.308 4.76 0.00 36.33 2.15
220 221 7.148120 CGTAAGTTATATGACCTCCGGTGATAT 60.148 40.741 4.76 9.40 43.08 1.63
221 222 7.554959 AAGTTATATGACCTCCGGTGATATT 57.445 36.000 9.67 0.00 38.91 1.28
222 223 8.660295 AAGTTATATGACCTCCGGTGATATTA 57.340 34.615 9.67 0.00 38.91 0.98
223 224 8.064336 AGTTATATGACCTCCGGTGATATTAC 57.936 38.462 9.67 10.53 38.91 1.89
224 225 7.894364 AGTTATATGACCTCCGGTGATATTACT 59.106 37.037 14.22 14.22 42.56 2.24
225 226 8.529476 GTTATATGACCTCCGGTGATATTACTT 58.471 37.037 9.67 0.00 38.91 2.24
842 867 3.554960 GCCTGAAATGTTTTCCCAAGTCC 60.555 47.826 0.00 0.00 0.00 3.85
1026 1051 0.458543 ACGCATGGTGATGTCTCGTC 60.459 55.000 0.00 0.00 31.50 4.20
1031 1056 1.852633 TGGTGATGTCTCGTCTGGAT 58.147 50.000 0.00 0.00 0.00 3.41
1108 1134 1.338200 ACTCACCATCGGTTTGCTCTC 60.338 52.381 0.00 0.00 31.02 3.20
1114 1140 2.069273 CATCGGTTTGCTCTCGAGTTT 58.931 47.619 13.13 0.00 36.34 2.66
1128 1154 6.015027 TCTCGAGTTTCTTTCTTACTCCTG 57.985 41.667 13.13 0.00 35.91 3.86
1303 1334 1.831106 ACATGGAAGATGCCGTGAGTA 59.169 47.619 6.04 0.00 45.81 2.59
1305 1336 3.270027 CATGGAAGATGCCGTGAGTAAA 58.730 45.455 0.00 0.00 45.81 2.01
1306 1337 3.410631 TGGAAGATGCCGTGAGTAAAA 57.589 42.857 0.00 0.00 0.00 1.52
1308 1339 3.500680 TGGAAGATGCCGTGAGTAAAAAC 59.499 43.478 0.00 0.00 0.00 2.43
1310 1341 3.134574 AGATGCCGTGAGTAAAAACCA 57.865 42.857 0.00 0.00 0.00 3.67
1312 1343 3.689649 AGATGCCGTGAGTAAAAACCATC 59.310 43.478 0.00 0.00 0.00 3.51
1313 1344 2.156098 TGCCGTGAGTAAAAACCATCC 58.844 47.619 0.00 0.00 0.00 3.51
1315 1346 2.161609 GCCGTGAGTAAAAACCATCCTG 59.838 50.000 0.00 0.00 0.00 3.86
1316 1347 3.670625 CCGTGAGTAAAAACCATCCTGA 58.329 45.455 0.00 0.00 0.00 3.86
1356 1387 2.825532 TGAAATGCCAAGGCCTAACTTC 59.174 45.455 5.16 4.37 41.09 3.01
1360 1391 0.681243 GCCAAGGCCTAACTTCCTGG 60.681 60.000 5.16 9.73 32.00 4.45
1467 1498 4.265073 AGGTTGGCATTCACTATTCAGTC 58.735 43.478 0.00 0.00 30.46 3.51
1476 1507 3.309296 TCACTATTCAGTCCCATCCTCC 58.691 50.000 0.00 0.00 30.46 4.30
1545 1576 7.181361 TCCTGGAATTCACATAAATCCTTTCA 58.819 34.615 7.93 0.00 0.00 2.69
1546 1577 7.122650 TCCTGGAATTCACATAAATCCTTTCAC 59.877 37.037 7.93 0.00 0.00 3.18
1547 1578 7.093814 CCTGGAATTCACATAAATCCTTTCACA 60.094 37.037 7.93 0.00 0.00 3.58
1548 1579 8.365060 TGGAATTCACATAAATCCTTTCACAT 57.635 30.769 7.93 0.00 0.00 3.21
1549 1580 8.469200 TGGAATTCACATAAATCCTTTCACATC 58.531 33.333 7.93 0.00 0.00 3.06
1550 1581 7.922811 GGAATTCACATAAATCCTTTCACATCC 59.077 37.037 7.93 0.00 0.00 3.51
1551 1582 8.599624 AATTCACATAAATCCTTTCACATCCT 57.400 30.769 0.00 0.00 0.00 3.24
1552 1583 7.395190 TTCACATAAATCCTTTCACATCCTG 57.605 36.000 0.00 0.00 0.00 3.86
1553 1584 5.357878 TCACATAAATCCTTTCACATCCTGC 59.642 40.000 0.00 0.00 0.00 4.85
1554 1585 4.646492 ACATAAATCCTTTCACATCCTGCC 59.354 41.667 0.00 0.00 0.00 4.85
1565 1596 1.345415 ACATCCTGCCCTTTTTGCAAG 59.655 47.619 0.00 0.00 38.46 4.01
1568 1599 1.688197 TCCTGCCCTTTTTGCAAGAAG 59.312 47.619 20.03 20.03 38.46 2.85
1569 1600 1.413812 CCTGCCCTTTTTGCAAGAAGT 59.586 47.619 23.64 0.00 38.46 3.01
1570 1601 2.476821 CTGCCCTTTTTGCAAGAAGTG 58.523 47.619 23.64 16.21 38.46 3.16
1739 1772 8.276325 CAGGTTATTTAGTAGCTAAGCAATTCG 58.724 37.037 0.00 0.00 0.00 3.34
1763 1796 3.563390 GCATCCTATGAGTTCTTTGAGGC 59.437 47.826 0.00 0.00 0.00 4.70
1800 1833 3.455327 GGAGTTTTCTGCCGATACTACC 58.545 50.000 0.00 0.00 31.91 3.18
1802 1835 4.113354 GAGTTTTCTGCCGATACTACCAG 58.887 47.826 0.00 0.00 0.00 4.00
1803 1836 3.118738 AGTTTTCTGCCGATACTACCAGG 60.119 47.826 0.00 0.00 0.00 4.45
1804 1837 2.447408 TTCTGCCGATACTACCAGGA 57.553 50.000 0.00 0.00 0.00 3.86
1805 1838 1.982660 TCTGCCGATACTACCAGGAG 58.017 55.000 0.00 0.00 0.00 3.69
1806 1839 1.214673 TCTGCCGATACTACCAGGAGT 59.785 52.381 0.00 0.00 0.00 3.85
1807 1840 2.440627 TCTGCCGATACTACCAGGAGTA 59.559 50.000 0.00 0.00 36.38 2.59
1809 1842 4.287845 TCTGCCGATACTACCAGGAGTATA 59.712 45.833 2.43 0.00 41.68 1.47
1811 1844 6.157471 TCTGCCGATACTACCAGGAGTATATA 59.843 42.308 2.43 0.00 41.68 0.86
1812 1845 6.354938 TGCCGATACTACCAGGAGTATATAG 58.645 44.000 2.43 0.00 41.68 1.31
1814 1847 6.827762 GCCGATACTACCAGGAGTATATAGTT 59.172 42.308 2.43 0.00 41.68 2.24
1815 1848 7.338957 GCCGATACTACCAGGAGTATATAGTTT 59.661 40.741 2.43 0.00 41.68 2.66
1902 1962 2.055579 GGAGGGACGGAGGGAATTATT 58.944 52.381 0.00 0.00 0.00 1.40
1979 2042 3.554524 CTCGGTTGTGCTTGTGTAAATG 58.445 45.455 0.00 0.00 0.00 2.32
1987 2050 4.036262 TGTGCTTGTGTAAATGTGAAGGTC 59.964 41.667 0.00 0.00 0.00 3.85
1988 2051 4.036262 GTGCTTGTGTAAATGTGAAGGTCA 59.964 41.667 0.00 0.00 0.00 4.02
2131 2194 0.100146 CAGACGTAGGAAGTACCGCC 59.900 60.000 0.00 0.00 44.74 6.13
2185 2248 1.895131 GTTGGGAATGCTGGTGATTGT 59.105 47.619 0.00 0.00 0.00 2.71
2194 2257 0.735978 CTGGTGATTGTCGCTGCGTA 60.736 55.000 22.48 9.74 0.00 4.42
2195 2258 0.319986 TGGTGATTGTCGCTGCGTAA 60.320 50.000 22.48 17.78 0.00 3.18
2206 2269 1.324736 CGCTGCGTAATCTCAAGGAAC 59.675 52.381 14.93 0.00 0.00 3.62
2224 2287 3.367190 GGAACGGTCAGGTACTTCTCTTC 60.367 52.174 1.31 0.00 34.60 2.87
2276 2339 8.504005 GTGCAGTATTTTGTTATAACTGTGACT 58.496 33.333 16.33 10.05 0.00 3.41
2277 2340 8.717821 TGCAGTATTTTGTTATAACTGTGACTC 58.282 33.333 16.33 8.14 0.00 3.36
2298 2361 6.592870 ACTCCTAATAGTGCCTGGTTTTATC 58.407 40.000 0.00 0.00 0.00 1.75
2344 2407 0.601576 TGACCACCGATCACAAACCG 60.602 55.000 0.00 0.00 0.00 4.44
2410 2473 3.236047 TGTTGTAGTTACTGGAGGAGCA 58.764 45.455 0.00 0.00 0.00 4.26
2454 2517 1.536331 GGTCTCCAGATCGATCGGTAC 59.464 57.143 25.27 23.04 0.00 3.34
2459 2522 3.021695 TCCAGATCGATCGGTACAGTTT 58.978 45.455 25.27 4.63 0.00 2.66
2535 2609 6.191657 TGCATTTCAGGTGATATGAGGTAT 57.808 37.500 12.86 0.00 36.15 2.73
2547 2621 8.669243 GGTGATATGAGGTATAAAAGCAATAGC 58.331 37.037 0.00 0.00 42.56 2.97
2683 2757 3.140325 TGACCCTTTTGCTGTTAGGAG 57.860 47.619 0.00 0.00 0.00 3.69
2752 2826 7.123847 GGAGTCTGGTAAGTCCTCAACTAAATA 59.876 40.741 0.00 0.00 37.17 1.40
2753 2827 8.611051 AGTCTGGTAAGTCCTCAACTAAATAT 57.389 34.615 0.00 0.00 37.17 1.28
2789 2863 8.020861 TGAAGCTTTGATCAATTATTGTTTGC 57.979 30.769 9.40 3.51 0.00 3.68
2826 2900 7.441157 ATGATTAGTTTCATACATGGTACACGG 59.559 37.037 0.00 0.00 36.25 4.94
2849 2923 5.694910 GGACTCGAAATGACAGTTAGTTTCA 59.305 40.000 0.00 0.00 32.36 2.69
2898 2976 9.765295 ATAGTTAGTAGTCTTTACCAAGGAAGA 57.235 33.333 0.00 0.00 0.00 2.87
2970 3048 4.202202 TGCATCATCACCGTGTACATATCA 60.202 41.667 0.00 0.00 0.00 2.15
2973 3051 6.619232 GCATCATCACCGTGTACATATCATTG 60.619 42.308 0.00 0.00 0.00 2.82
3032 3110 1.350684 TGCTGATCCCTTGTTGTGCTA 59.649 47.619 0.00 0.00 0.00 3.49
3033 3111 2.012673 GCTGATCCCTTGTTGTGCTAG 58.987 52.381 0.00 0.00 0.00 3.42
3034 3112 2.616510 GCTGATCCCTTGTTGTGCTAGT 60.617 50.000 0.00 0.00 0.00 2.57
3035 3113 3.369471 GCTGATCCCTTGTTGTGCTAGTA 60.369 47.826 0.00 0.00 0.00 1.82
3036 3114 4.684485 GCTGATCCCTTGTTGTGCTAGTAT 60.684 45.833 0.00 0.00 0.00 2.12
3037 3115 4.769688 TGATCCCTTGTTGTGCTAGTATG 58.230 43.478 0.00 0.00 0.00 2.39
3038 3116 3.627395 TCCCTTGTTGTGCTAGTATGG 57.373 47.619 0.00 0.00 0.00 2.74
3094 3172 8.523915 AACCTGAATGCATGAATATGAACTTA 57.476 30.769 0.00 0.00 36.36 2.24
3133 3211 9.045223 GGTTGGAAAAAGATATTGAAATATGCC 57.955 33.333 0.29 0.00 31.96 4.40
3136 3214 7.927629 TGGAAAAAGATATTGAAATATGCCTGC 59.072 33.333 0.29 0.00 31.96 4.85
3225 3306 1.270550 GGCAGTGAAGGAAACATGGTG 59.729 52.381 0.00 0.00 0.00 4.17
3234 3315 3.412386 AGGAAACATGGTGAAGTGTAGC 58.588 45.455 0.00 0.00 0.00 3.58
3317 3398 5.438972 GCTCTTTGCTCTATCTAAATTGCG 58.561 41.667 0.00 0.00 38.95 4.85
3318 3399 5.235186 GCTCTTTGCTCTATCTAAATTGCGA 59.765 40.000 0.00 0.00 38.95 5.10
3319 3400 6.238211 GCTCTTTGCTCTATCTAAATTGCGAA 60.238 38.462 0.00 0.00 38.95 4.70
3320 3401 7.609760 TCTTTGCTCTATCTAAATTGCGAAA 57.390 32.000 0.00 0.00 0.00 3.46
3321 3402 8.039603 TCTTTGCTCTATCTAAATTGCGAAAA 57.960 30.769 0.00 0.00 0.00 2.29
3322 3403 8.677300 TCTTTGCTCTATCTAAATTGCGAAAAT 58.323 29.630 0.00 0.00 0.00 1.82
3323 3404 9.935682 CTTTGCTCTATCTAAATTGCGAAAATA 57.064 29.630 0.00 0.00 0.00 1.40
3326 3407 9.271828 TGCTCTATCTAAATTGCGAAAATATCA 57.728 29.630 0.00 0.00 0.00 2.15
3349 3430 2.656002 TGGAAACAAACATTCGGTGGA 58.344 42.857 0.00 0.00 37.44 4.02
3350 3431 3.024547 TGGAAACAAACATTCGGTGGAA 58.975 40.909 0.00 0.00 37.44 3.53
3351 3432 3.447586 TGGAAACAAACATTCGGTGGAAA 59.552 39.130 0.00 0.00 37.44 3.13
3352 3433 3.799963 GGAAACAAACATTCGGTGGAAAC 59.200 43.478 0.00 0.00 35.40 2.78
3353 3434 3.446310 AACAAACATTCGGTGGAAACC 57.554 42.857 0.00 0.00 35.40 3.27
3365 3446 4.365899 GGTGGAAACCGGTGAAAATATC 57.634 45.455 8.52 0.00 0.00 1.63
3366 3447 3.759618 GGTGGAAACCGGTGAAAATATCA 59.240 43.478 8.52 0.00 35.05 2.15
3367 3448 4.401202 GGTGGAAACCGGTGAAAATATCAT 59.599 41.667 8.52 0.00 40.97 2.45
3368 3449 5.591067 GGTGGAAACCGGTGAAAATATCATA 59.409 40.000 8.52 0.00 40.97 2.15
3369 3450 6.264518 GGTGGAAACCGGTGAAAATATCATAT 59.735 38.462 8.52 0.00 40.97 1.78
3370 3451 7.201875 GGTGGAAACCGGTGAAAATATCATATT 60.202 37.037 8.52 0.00 40.97 1.28
3371 3452 7.647715 GTGGAAACCGGTGAAAATATCATATTG 59.352 37.037 8.52 0.00 40.97 1.90
3372 3453 7.558081 TGGAAACCGGTGAAAATATCATATTGA 59.442 33.333 8.52 0.00 40.97 2.57
3373 3454 8.410141 GGAAACCGGTGAAAATATCATATTGAA 58.590 33.333 8.52 0.00 40.97 2.69
3374 3455 9.796120 GAAACCGGTGAAAATATCATATTGAAA 57.204 29.630 8.52 0.00 40.97 2.69
3375 3456 9.581099 AAACCGGTGAAAATATCATATTGAAAC 57.419 29.630 8.52 0.00 40.97 2.78
3376 3457 7.712797 ACCGGTGAAAATATCATATTGAAACC 58.287 34.615 6.12 0.00 40.97 3.27
3377 3458 7.340743 ACCGGTGAAAATATCATATTGAAACCA 59.659 33.333 6.12 0.00 40.97 3.67
3378 3459 7.862372 CCGGTGAAAATATCATATTGAAACCAG 59.138 37.037 12.71 7.69 40.97 4.00
3379 3460 7.379529 CGGTGAAAATATCATATTGAAACCAGC 59.620 37.037 12.71 6.64 40.97 4.85
3380 3461 8.416329 GGTGAAAATATCATATTGAAACCAGCT 58.584 33.333 9.36 0.00 40.97 4.24
3381 3462 9.807649 GTGAAAATATCATATTGAAACCAGCTT 57.192 29.630 0.00 0.00 40.97 3.74
3386 3467 6.973229 ATCATATTGAAACCAGCTTTTTGC 57.027 33.333 0.00 0.00 43.29 3.68
3502 3583 4.572985 TTCTTCTTGTTTCACCAGCATG 57.427 40.909 0.00 0.00 0.00 4.06
3518 3599 1.399791 GCATGTCTGCCTGTTTAGCTC 59.600 52.381 0.00 0.00 42.88 4.09
3535 3616 7.453126 TGTTTAGCTCATCAAATTCCCCTTTAA 59.547 33.333 0.00 0.00 0.00 1.52
3546 3627 8.748412 TCAAATTCCCCTTTAACTTGACATATG 58.252 33.333 0.00 0.00 0.00 1.78
3616 3699 1.078143 GAACTGCGAGGCCATCCTT 60.078 57.895 5.01 0.00 44.46 3.36
3781 3864 1.005924 GAACTGGGGGTGATGGACAAT 59.994 52.381 0.00 0.00 0.00 2.71
3783 3866 0.106519 CTGGGGGTGATGGACAATCC 60.107 60.000 0.00 0.00 36.96 3.01
4060 4178 3.946606 TGGATATGCATATGCTCACTGG 58.053 45.455 30.68 0.00 42.66 4.00
4061 4179 3.583966 TGGATATGCATATGCTCACTGGA 59.416 43.478 30.68 12.45 42.66 3.86
4063 4181 4.575236 GGATATGCATATGCTCACTGGATG 59.425 45.833 25.92 0.00 42.66 3.51
4064 4182 1.601166 TGCATATGCTCACTGGATGC 58.399 50.000 27.13 0.17 42.57 3.91
4065 4183 1.601166 GCATATGCTCACTGGATGCA 58.399 50.000 20.64 0.00 41.98 3.96
4067 4185 2.557056 GCATATGCTCACTGGATGCATT 59.443 45.455 20.64 0.00 43.85 3.56
4068 4186 3.366070 GCATATGCTCACTGGATGCATTC 60.366 47.826 20.64 0.00 43.85 2.67
4132 4254 9.331282 GAGTGTATTAATTCCTTGCTGATACTT 57.669 33.333 0.00 0.00 0.00 2.24
4185 4307 2.225491 TCTGGAAAAGAAATCGCAACCG 59.775 45.455 0.00 0.00 29.54 4.44
4205 4327 3.057315 CCGAAAGATTGTTGCAGTGGATT 60.057 43.478 0.00 0.00 0.00 3.01
4206 4328 3.916172 CGAAAGATTGTTGCAGTGGATTG 59.084 43.478 0.00 0.00 0.00 2.67
4208 4330 5.620654 CGAAAGATTGTTGCAGTGGATTGAT 60.621 40.000 0.00 0.00 0.00 2.57
4209 4331 4.713824 AGATTGTTGCAGTGGATTGATG 57.286 40.909 0.00 0.00 0.00 3.07
4210 4332 4.338012 AGATTGTTGCAGTGGATTGATGA 58.662 39.130 0.00 0.00 0.00 2.92
4211 4333 4.398358 AGATTGTTGCAGTGGATTGATGAG 59.602 41.667 0.00 0.00 0.00 2.90
4212 4334 3.421919 TGTTGCAGTGGATTGATGAGA 57.578 42.857 0.00 0.00 0.00 3.27
4213 4335 3.753815 TGTTGCAGTGGATTGATGAGAA 58.246 40.909 0.00 0.00 0.00 2.87
4214 4336 3.754850 TGTTGCAGTGGATTGATGAGAAG 59.245 43.478 0.00 0.00 0.00 2.85
4215 4337 3.986996 TGCAGTGGATTGATGAGAAGA 57.013 42.857 0.00 0.00 0.00 2.87
4216 4338 4.498894 TGCAGTGGATTGATGAGAAGAT 57.501 40.909 0.00 0.00 0.00 2.40
4218 4340 5.258841 TGCAGTGGATTGATGAGAAGATTT 58.741 37.500 0.00 0.00 0.00 2.17
4219 4341 5.356190 TGCAGTGGATTGATGAGAAGATTTC 59.644 40.000 0.00 0.00 0.00 2.17
4220 4342 5.589452 GCAGTGGATTGATGAGAAGATTTCT 59.411 40.000 0.00 0.00 44.21 2.52
4221 4343 6.458478 GCAGTGGATTGATGAGAAGATTTCTG 60.458 42.308 0.00 0.00 40.87 3.02
4222 4344 5.589452 AGTGGATTGATGAGAAGATTTCTGC 59.411 40.000 0.00 0.00 40.87 4.26
4223 4345 5.356190 GTGGATTGATGAGAAGATTTCTGCA 59.644 40.000 0.00 0.00 40.87 4.41
4224 4346 5.947566 TGGATTGATGAGAAGATTTCTGCAA 59.052 36.000 0.00 0.00 40.87 4.08
4225 4347 6.605995 TGGATTGATGAGAAGATTTCTGCAAT 59.394 34.615 0.00 4.11 40.87 3.56
4226 4348 7.123697 TGGATTGATGAGAAGATTTCTGCAATT 59.876 33.333 0.00 0.00 40.87 2.32
4227 4349 7.435488 GGATTGATGAGAAGATTTCTGCAATTG 59.565 37.037 0.00 0.00 40.87 2.32
4228 4350 6.203808 TGATGAGAAGATTTCTGCAATTGG 57.796 37.500 7.72 0.00 40.87 3.16
4229 4351 5.947566 TGATGAGAAGATTTCTGCAATTGGA 59.052 36.000 7.72 2.96 40.87 3.53
4230 4352 6.605995 TGATGAGAAGATTTCTGCAATTGGAT 59.394 34.615 7.72 0.00 40.87 3.41
4231 4353 7.776500 TGATGAGAAGATTTCTGCAATTGGATA 59.224 33.333 7.72 0.00 40.87 2.59
4232 4354 8.707796 ATGAGAAGATTTCTGCAATTGGATAT 57.292 30.769 7.72 0.00 40.87 1.63
4233 4355 7.937649 TGAGAAGATTTCTGCAATTGGATATG 58.062 34.615 7.72 0.00 40.87 1.78
4234 4356 6.746120 AGAAGATTTCTGCAATTGGATATGC 58.254 36.000 7.72 0.00 42.86 3.14
4242 4364 5.319140 TGCAATTGGATATGCATATGCTC 57.681 39.130 30.68 16.66 46.87 4.26
4243 4365 4.767928 TGCAATTGGATATGCATATGCTCA 59.232 37.500 30.68 20.93 46.87 4.26
4244 4366 5.100259 GCAATTGGATATGCATATGCTCAC 58.900 41.667 30.68 14.64 42.12 3.51
4245 4367 5.329493 CAATTGGATATGCATATGCTCACG 58.671 41.667 30.68 17.32 42.66 4.35
4246 4368 3.959535 TGGATATGCATATGCTCACGA 57.040 42.857 30.68 13.69 42.66 4.35
4247 4369 3.853475 TGGATATGCATATGCTCACGAG 58.147 45.455 30.68 0.00 42.66 4.18
4248 4370 3.511146 TGGATATGCATATGCTCACGAGA 59.489 43.478 30.68 12.45 42.66 4.04
4249 4371 4.021192 TGGATATGCATATGCTCACGAGAA 60.021 41.667 30.68 11.82 42.66 2.87
4250 4372 4.565962 GGATATGCATATGCTCACGAGAAG 59.434 45.833 25.92 0.00 42.66 2.85
4251 4373 3.740631 ATGCATATGCTCACGAGAAGA 57.259 42.857 27.13 4.41 42.66 2.87
4252 4374 3.740631 TGCATATGCTCACGAGAAGAT 57.259 42.857 27.13 0.00 42.66 2.40
4253 4375 4.063998 TGCATATGCTCACGAGAAGATT 57.936 40.909 27.13 0.00 42.66 2.40
4254 4376 4.053983 TGCATATGCTCACGAGAAGATTC 58.946 43.478 27.13 0.00 42.66 2.52
4255 4377 4.202192 TGCATATGCTCACGAGAAGATTCT 60.202 41.667 27.13 0.00 42.66 2.40
4256 4378 4.150274 GCATATGCTCACGAGAAGATTCTG 59.850 45.833 20.64 0.00 36.41 3.02
4257 4379 2.662006 TGCTCACGAGAAGATTCTGG 57.338 50.000 0.00 1.26 37.73 3.86
4258 4380 2.171003 TGCTCACGAGAAGATTCTGGA 58.829 47.619 11.01 1.07 37.73 3.86
4259 4381 2.562738 TGCTCACGAGAAGATTCTGGAA 59.437 45.455 11.01 0.00 37.73 3.53
4260 4382 3.006859 TGCTCACGAGAAGATTCTGGAAA 59.993 43.478 11.01 0.00 37.73 3.13
4261 4383 3.997021 GCTCACGAGAAGATTCTGGAAAA 59.003 43.478 11.01 0.00 37.73 2.29
4262 4384 4.092675 GCTCACGAGAAGATTCTGGAAAAG 59.907 45.833 11.01 6.48 37.73 2.27
4263 4385 5.468540 TCACGAGAAGATTCTGGAAAAGA 57.531 39.130 11.01 2.10 37.73 2.52
4277 4399 5.689383 TGGAAAAGAAATCTTCCAACGAG 57.311 39.130 1.07 0.00 46.35 4.18
4278 4400 5.130350 TGGAAAAGAAATCTTCCAACGAGT 58.870 37.500 1.07 0.00 46.35 4.18
4279 4401 6.292923 TGGAAAAGAAATCTTCCAACGAGTA 58.707 36.000 1.07 0.00 46.35 2.59
4280 4402 6.426937 TGGAAAAGAAATCTTCCAACGAGTAG 59.573 38.462 1.07 0.00 46.35 2.57
4281 4403 5.864628 AAAGAAATCTTCCAACGAGTAGC 57.135 39.130 0.00 0.00 34.61 3.58
4282 4404 4.810191 AGAAATCTTCCAACGAGTAGCT 57.190 40.909 0.00 0.00 0.00 3.32
4283 4405 4.499183 AGAAATCTTCCAACGAGTAGCTG 58.501 43.478 0.00 0.00 0.00 4.24
4284 4406 4.220821 AGAAATCTTCCAACGAGTAGCTGA 59.779 41.667 0.00 0.00 0.00 4.26
4285 4407 4.744795 AATCTTCCAACGAGTAGCTGAT 57.255 40.909 0.00 0.00 0.00 2.90
4286 4408 4.744795 ATCTTCCAACGAGTAGCTGATT 57.255 40.909 0.00 0.00 0.00 2.57
4287 4409 4.537135 TCTTCCAACGAGTAGCTGATTT 57.463 40.909 0.00 0.00 0.00 2.17
4288 4410 4.495422 TCTTCCAACGAGTAGCTGATTTC 58.505 43.478 0.00 0.00 0.00 2.17
4289 4411 4.220821 TCTTCCAACGAGTAGCTGATTTCT 59.779 41.667 0.00 0.00 0.00 2.52
4290 4412 3.849911 TCCAACGAGTAGCTGATTTCTG 58.150 45.455 0.00 0.00 0.00 3.02
4291 4413 2.349886 CCAACGAGTAGCTGATTTCTGC 59.650 50.000 0.00 1.57 40.53 4.26
4292 4414 2.995939 CAACGAGTAGCTGATTTCTGCA 59.004 45.455 11.32 0.00 42.33 4.41
4293 4415 3.319137 ACGAGTAGCTGATTTCTGCAA 57.681 42.857 11.32 0.00 42.33 4.08
4294 4416 3.866651 ACGAGTAGCTGATTTCTGCAAT 58.133 40.909 11.32 0.00 42.33 3.56
4295 4417 4.256920 ACGAGTAGCTGATTTCTGCAATT 58.743 39.130 11.32 0.00 42.33 2.32
4296 4418 4.697352 ACGAGTAGCTGATTTCTGCAATTT 59.303 37.500 11.32 0.00 42.33 1.82
4297 4419 5.163814 ACGAGTAGCTGATTTCTGCAATTTC 60.164 40.000 11.32 3.76 42.33 2.17
4298 4420 5.064452 CGAGTAGCTGATTTCTGCAATTTCT 59.936 40.000 11.32 3.13 42.33 2.52
4299 4421 6.192234 AGTAGCTGATTTCTGCAATTTCTG 57.808 37.500 11.32 0.00 42.33 3.02
4300 4422 5.942236 AGTAGCTGATTTCTGCAATTTCTGA 59.058 36.000 11.32 0.00 42.33 3.27
4301 4423 5.717078 AGCTGATTTCTGCAATTTCTGAA 57.283 34.783 11.32 0.00 42.33 3.02
4302 4424 6.092955 AGCTGATTTCTGCAATTTCTGAAA 57.907 33.333 11.32 11.32 42.33 2.69
4303 4425 6.698380 AGCTGATTTCTGCAATTTCTGAAAT 58.302 32.000 18.05 18.05 42.97 2.17
4306 4428 6.017580 GATTTCTGCAATTTCTGAAATCGC 57.982 37.500 23.72 16.96 44.05 4.58
4307 4429 4.502171 TTCTGCAATTTCTGAAATCGCA 57.498 36.364 23.01 23.01 38.39 5.10
4308 4430 4.502171 TCTGCAATTTCTGAAATCGCAA 57.498 36.364 24.10 14.87 40.01 4.85
4309 4431 4.229096 TCTGCAATTTCTGAAATCGCAAC 58.771 39.130 24.10 10.46 40.01 4.17
4310 4432 3.316283 TGCAATTTCTGAAATCGCAACC 58.684 40.909 22.49 6.88 37.82 3.77
4311 4433 3.243670 TGCAATTTCTGAAATCGCAACCA 60.244 39.130 22.49 3.47 37.82 3.67
4312 4434 3.740321 GCAATTTCTGAAATCGCAACCAA 59.260 39.130 18.46 0.00 31.24 3.67
4313 4435 4.389687 GCAATTTCTGAAATCGCAACCAAT 59.610 37.500 18.46 0.00 31.24 3.16
4314 4436 5.669357 GCAATTTCTGAAATCGCAACCAATG 60.669 40.000 18.46 10.14 31.24 2.82
4387 4509 4.242475 CAGCATCACATTTCTGCAATTGT 58.758 39.130 7.40 0.00 38.37 2.71
4433 4555 1.214305 TTGATTGGGGACAGAGGGGG 61.214 60.000 0.00 0.00 44.54 5.40
4504 4627 4.756084 AACAAGCTGCTACTTCAACATC 57.244 40.909 0.90 0.00 0.00 3.06
4541 4664 4.166725 ACCCTGAAGCATATGATTCCTGAA 59.833 41.667 26.36 10.49 39.51 3.02
4542 4665 4.518211 CCCTGAAGCATATGATTCCTGAAC 59.482 45.833 26.36 6.13 39.51 3.18
4544 4667 6.464892 CCCTGAAGCATATGATTCCTGAACTA 60.465 42.308 26.36 8.89 39.51 2.24
4548 4671 7.386025 TGAAGCATATGATTCCTGAACTATTCG 59.614 37.037 26.36 0.00 39.51 3.34
4575 4701 6.016024 ACAAGAGCAAGCAGATCAAAATGTTA 60.016 34.615 0.00 0.00 34.30 2.41
4585 4711 7.039504 AGCAGATCAAAATGTTACAGAACCAAT 60.040 33.333 0.00 0.00 34.38 3.16
4613 4739 6.893759 AGATACGTACAGATTCAGATTCTCG 58.106 40.000 0.00 0.00 0.00 4.04
4631 4757 2.093106 TCGGCTCTACCAGTTTCTCTC 58.907 52.381 0.00 0.00 39.03 3.20
4678 4804 5.305585 CAACTACAGAAACCCATGTACTGT 58.694 41.667 0.00 0.00 41.60 3.55
4679 4805 5.562298 ACTACAGAAACCCATGTACTGTT 57.438 39.130 0.00 0.00 40.33 3.16
4680 4806 6.675413 ACTACAGAAACCCATGTACTGTTA 57.325 37.500 0.00 0.00 40.33 2.41
4681 4807 6.461640 ACTACAGAAACCCATGTACTGTTAC 58.538 40.000 0.00 0.00 40.33 2.50
4682 4808 5.562298 ACAGAAACCCATGTACTGTTACT 57.438 39.130 0.00 0.00 38.31 2.24
4683 4809 5.305585 ACAGAAACCCATGTACTGTTACTG 58.694 41.667 0.00 0.00 38.31 2.74
4734 4860 1.098050 GCAGCGATCCTGGATTGTTT 58.902 50.000 22.08 10.54 42.03 2.83
4747 4873 3.119531 TGGATTGTTTTCATGACCGATGC 60.120 43.478 0.00 0.00 31.32 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.595311 AGCCCCCTCATCAACACATA 58.405 50.000 0.00 0.00 0.00 2.29
1 2 0.706433 AAGCCCCCTCATCAACACAT 59.294 50.000 0.00 0.00 0.00 3.21
2 3 0.038166 GAAGCCCCCTCATCAACACA 59.962 55.000 0.00 0.00 0.00 3.72
3 4 0.329596 AGAAGCCCCCTCATCAACAC 59.670 55.000 0.00 0.00 0.00 3.32
4 5 0.329261 CAGAAGCCCCCTCATCAACA 59.671 55.000 0.00 0.00 0.00 3.33
5 6 0.329596 ACAGAAGCCCCCTCATCAAC 59.670 55.000 0.00 0.00 0.00 3.18
6 7 0.329261 CACAGAAGCCCCCTCATCAA 59.671 55.000 0.00 0.00 0.00 2.57
7 8 1.993653 CACAGAAGCCCCCTCATCA 59.006 57.895 0.00 0.00 0.00 3.07
8 9 1.452833 GCACAGAAGCCCCCTCATC 60.453 63.158 0.00 0.00 0.00 2.92
9 10 1.792757 TTGCACAGAAGCCCCCTCAT 61.793 55.000 0.00 0.00 0.00 2.90
10 11 1.792757 ATTGCACAGAAGCCCCCTCA 61.793 55.000 0.00 0.00 0.00 3.86
11 12 0.613012 AATTGCACAGAAGCCCCCTC 60.613 55.000 0.00 0.00 0.00 4.30
12 13 0.704076 TAATTGCACAGAAGCCCCCT 59.296 50.000 0.00 0.00 0.00 4.79
13 14 1.555967 TTAATTGCACAGAAGCCCCC 58.444 50.000 0.00 0.00 0.00 5.40
14 15 3.676291 TTTTAATTGCACAGAAGCCCC 57.324 42.857 0.00 0.00 0.00 5.80
15 16 4.376146 TGTTTTTAATTGCACAGAAGCCC 58.624 39.130 0.00 0.00 0.00 5.19
16 17 5.982465 TTGTTTTTAATTGCACAGAAGCC 57.018 34.783 0.00 0.00 0.00 4.35
17 18 5.903530 GCTTTGTTTTTAATTGCACAGAAGC 59.096 36.000 0.00 0.00 31.97 3.86
18 19 7.002816 TGCTTTGTTTTTAATTGCACAGAAG 57.997 32.000 0.00 0.00 0.00 2.85
19 20 6.036953 CCTGCTTTGTTTTTAATTGCACAGAA 59.963 34.615 0.00 0.00 0.00 3.02
20 21 5.523188 CCTGCTTTGTTTTTAATTGCACAGA 59.477 36.000 0.00 0.00 0.00 3.41
21 22 5.277442 CCCTGCTTTGTTTTTAATTGCACAG 60.277 40.000 0.00 0.00 0.00 3.66
22 23 4.574013 CCCTGCTTTGTTTTTAATTGCACA 59.426 37.500 0.00 0.00 0.00 4.57
23 24 4.024133 CCCCTGCTTTGTTTTTAATTGCAC 60.024 41.667 0.00 0.00 0.00 4.57
24 25 4.133078 CCCCTGCTTTGTTTTTAATTGCA 58.867 39.130 0.00 0.00 0.00 4.08
25 26 4.024133 CACCCCTGCTTTGTTTTTAATTGC 60.024 41.667 0.00 0.00 0.00 3.56
26 27 5.122519 ACACCCCTGCTTTGTTTTTAATTG 58.877 37.500 0.00 0.00 0.00 2.32
27 28 5.366482 ACACCCCTGCTTTGTTTTTAATT 57.634 34.783 0.00 0.00 0.00 1.40
28 29 5.366482 AACACCCCTGCTTTGTTTTTAAT 57.634 34.783 0.00 0.00 28.92 1.40
29 30 4.828072 AACACCCCTGCTTTGTTTTTAA 57.172 36.364 0.00 0.00 28.92 1.52
30 31 4.678309 CGAAACACCCCTGCTTTGTTTTTA 60.678 41.667 0.84 0.00 42.19 1.52
31 32 3.605634 GAAACACCCCTGCTTTGTTTTT 58.394 40.909 0.84 0.00 42.19 1.94
32 33 2.418060 CGAAACACCCCTGCTTTGTTTT 60.418 45.455 0.84 0.00 42.19 2.43
33 34 1.136110 CGAAACACCCCTGCTTTGTTT 59.864 47.619 0.00 0.00 44.24 2.83
34 35 0.744281 CGAAACACCCCTGCTTTGTT 59.256 50.000 0.00 0.00 34.92 2.83
35 36 1.106944 CCGAAACACCCCTGCTTTGT 61.107 55.000 0.00 0.00 0.00 2.83
36 37 1.106944 ACCGAAACACCCCTGCTTTG 61.107 55.000 0.00 0.00 0.00 2.77
37 38 0.475044 TACCGAAACACCCCTGCTTT 59.525 50.000 0.00 0.00 0.00 3.51
38 39 0.475044 TTACCGAAACACCCCTGCTT 59.525 50.000 0.00 0.00 0.00 3.91
39 40 0.475044 TTTACCGAAACACCCCTGCT 59.525 50.000 0.00 0.00 0.00 4.24
40 41 1.320507 TTTTACCGAAACACCCCTGC 58.679 50.000 0.00 0.00 0.00 4.85
57 58 4.987912 CGTGGCATGACTAAAACCATTTTT 59.012 37.500 0.00 0.00 38.51 1.94
58 59 4.038642 ACGTGGCATGACTAAAACCATTTT 59.961 37.500 14.82 0.00 36.67 1.82
59 60 3.572255 ACGTGGCATGACTAAAACCATTT 59.428 39.130 14.82 0.00 31.99 2.32
60 61 3.153919 ACGTGGCATGACTAAAACCATT 58.846 40.909 14.82 0.00 31.99 3.16
61 62 2.790433 ACGTGGCATGACTAAAACCAT 58.210 42.857 14.82 0.00 31.99 3.55
62 63 2.264005 ACGTGGCATGACTAAAACCA 57.736 45.000 14.82 0.00 0.00 3.67
63 64 3.425758 GCTTACGTGGCATGACTAAAACC 60.426 47.826 14.82 0.00 0.00 3.27
64 65 3.723835 CGCTTACGTGGCATGACTAAAAC 60.724 47.826 14.82 0.00 33.53 2.43
65 66 2.413796 CGCTTACGTGGCATGACTAAAA 59.586 45.455 14.82 0.00 33.53 1.52
66 67 1.996898 CGCTTACGTGGCATGACTAAA 59.003 47.619 14.82 1.51 33.53 1.85
67 68 1.635844 CGCTTACGTGGCATGACTAA 58.364 50.000 14.82 1.68 33.53 2.24
68 69 0.804544 GCGCTTACGTGGCATGACTA 60.805 55.000 14.82 0.00 42.83 2.59
69 70 2.100631 GCGCTTACGTGGCATGACT 61.101 57.895 14.82 0.00 42.83 3.41
70 71 2.296692 CTGCGCTTACGTGGCATGAC 62.297 60.000 14.82 0.00 42.83 3.06
71 72 2.047750 TGCGCTTACGTGGCATGA 60.048 55.556 14.82 0.00 42.83 3.07
72 73 2.400798 CTGCGCTTACGTGGCATG 59.599 61.111 9.73 4.87 42.83 4.06
73 74 2.593468 ATCCTGCGCTTACGTGGCAT 62.593 55.000 9.73 0.00 42.83 4.40
74 75 1.950973 TATCCTGCGCTTACGTGGCA 61.951 55.000 9.73 9.81 42.83 4.92
75 76 1.227147 TATCCTGCGCTTACGTGGC 60.227 57.895 9.73 1.22 42.83 5.01
76 77 0.179121 TGTATCCTGCGCTTACGTGG 60.179 55.000 9.73 1.34 42.83 4.94
77 78 1.787155 GATGTATCCTGCGCTTACGTG 59.213 52.381 9.73 0.00 42.83 4.49
78 79 1.269621 GGATGTATCCTGCGCTTACGT 60.270 52.381 9.73 6.87 43.73 3.57
79 80 1.419374 GGATGTATCCTGCGCTTACG 58.581 55.000 9.73 0.00 43.73 3.18
80 81 1.419374 CGGATGTATCCTGCGCTTAC 58.581 55.000 9.73 6.21 44.93 2.34
81 82 0.317160 CCGGATGTATCCTGCGCTTA 59.683 55.000 9.73 0.00 44.93 3.09
82 83 1.069765 CCGGATGTATCCTGCGCTT 59.930 57.895 9.73 0.00 44.93 4.68
83 84 1.188219 ATCCGGATGTATCCTGCGCT 61.188 55.000 18.33 0.00 44.93 5.92
84 85 0.530744 TATCCGGATGTATCCTGCGC 59.469 55.000 27.55 0.00 44.93 6.09
85 86 1.467543 CGTATCCGGATGTATCCTGCG 60.468 57.143 27.55 11.14 44.93 5.18
86 87 2.279582 CGTATCCGGATGTATCCTGC 57.720 55.000 27.55 1.76 44.93 4.85
98 99 3.132629 CGGTCATCTTATCCGTATCCG 57.867 52.381 0.00 0.00 39.51 4.18
105 106 4.084537 CGTGCAAATACGGTCATCTTATCC 60.085 45.833 0.00 0.00 40.22 2.59
106 107 4.743151 TCGTGCAAATACGGTCATCTTATC 59.257 41.667 0.00 0.00 43.85 1.75
107 108 4.689071 TCGTGCAAATACGGTCATCTTAT 58.311 39.130 0.00 0.00 43.85 1.73
108 109 4.109766 CTCGTGCAAATACGGTCATCTTA 58.890 43.478 0.00 0.00 43.85 2.10
109 110 2.930040 CTCGTGCAAATACGGTCATCTT 59.070 45.455 0.00 0.00 43.85 2.40
110 111 2.165641 TCTCGTGCAAATACGGTCATCT 59.834 45.455 0.00 0.00 43.85 2.90
111 112 2.536365 TCTCGTGCAAATACGGTCATC 58.464 47.619 0.00 0.00 43.85 2.92
112 113 2.665649 TCTCGTGCAAATACGGTCAT 57.334 45.000 0.00 0.00 43.85 3.06
113 114 2.063266 GTTCTCGTGCAAATACGGTCA 58.937 47.619 0.00 0.00 43.85 4.02
114 115 1.058695 CGTTCTCGTGCAAATACGGTC 59.941 52.381 0.00 0.00 43.85 4.79
115 116 1.065358 CGTTCTCGTGCAAATACGGT 58.935 50.000 0.00 0.00 43.85 4.83
116 117 0.247145 GCGTTCTCGTGCAAATACGG 60.247 55.000 0.00 0.00 43.85 4.02
117 118 0.436913 TGCGTTCTCGTGCAAATACG 59.563 50.000 0.00 0.00 44.98 3.06
123 124 1.136690 CTAACTTGCGTTCTCGTGCA 58.863 50.000 0.00 0.00 39.81 4.57
124 125 1.415374 TCTAACTTGCGTTCTCGTGC 58.585 50.000 0.00 0.00 39.49 5.34
125 126 3.242518 TCATCTAACTTGCGTTCTCGTG 58.757 45.455 0.00 0.00 39.49 4.35
126 127 3.570926 TCATCTAACTTGCGTTCTCGT 57.429 42.857 0.00 0.00 39.49 4.18
127 128 4.027295 GTGATCATCTAACTTGCGTTCTCG 60.027 45.833 0.00 0.00 40.37 4.04
128 129 4.864806 TGTGATCATCTAACTTGCGTTCTC 59.135 41.667 0.00 0.00 34.59 2.87
129 130 4.820897 TGTGATCATCTAACTTGCGTTCT 58.179 39.130 0.00 0.00 34.59 3.01
130 131 5.530519 TTGTGATCATCTAACTTGCGTTC 57.469 39.130 0.00 0.00 34.59 3.95
131 132 5.940192 TTTGTGATCATCTAACTTGCGTT 57.060 34.783 0.00 0.00 37.15 4.84
132 133 5.065218 GGATTTGTGATCATCTAACTTGCGT 59.935 40.000 0.00 0.00 0.00 5.24
133 134 5.505286 GGATTTGTGATCATCTAACTTGCG 58.495 41.667 0.00 0.00 0.00 4.85
134 135 5.065218 ACGGATTTGTGATCATCTAACTTGC 59.935 40.000 0.00 0.00 0.00 4.01
135 136 6.668541 ACGGATTTGTGATCATCTAACTTG 57.331 37.500 0.00 0.00 0.00 3.16
136 137 8.964476 AATACGGATTTGTGATCATCTAACTT 57.036 30.769 0.00 0.00 0.00 2.66
137 138 8.964476 AAATACGGATTTGTGATCATCTAACT 57.036 30.769 4.38 0.00 33.86 2.24
138 139 9.651718 GAAAATACGGATTTGTGATCATCTAAC 57.348 33.333 6.32 0.00 35.38 2.34
139 140 9.389755 TGAAAATACGGATTTGTGATCATCTAA 57.610 29.630 6.32 0.00 35.38 2.10
140 141 8.956533 TGAAAATACGGATTTGTGATCATCTA 57.043 30.769 6.32 0.00 35.38 1.98
141 142 7.864108 TGAAAATACGGATTTGTGATCATCT 57.136 32.000 6.32 0.00 35.38 2.90
142 143 8.909708 TTTGAAAATACGGATTTGTGATCATC 57.090 30.769 6.32 0.00 35.38 2.92
143 144 8.522830 ACTTTGAAAATACGGATTTGTGATCAT 58.477 29.630 6.32 0.00 35.38 2.45
144 145 7.881142 ACTTTGAAAATACGGATTTGTGATCA 58.119 30.769 6.32 3.69 35.38 2.92
145 146 8.742554 AACTTTGAAAATACGGATTTGTGATC 57.257 30.769 6.32 0.81 35.38 2.92
146 147 8.576442 AGAACTTTGAAAATACGGATTTGTGAT 58.424 29.630 6.32 0.00 35.38 3.06
147 148 7.936584 AGAACTTTGAAAATACGGATTTGTGA 58.063 30.769 6.32 0.00 35.38 3.58
148 149 9.329913 CTAGAACTTTGAAAATACGGATTTGTG 57.670 33.333 6.32 0.00 35.38 3.33
149 150 8.021396 GCTAGAACTTTGAAAATACGGATTTGT 58.979 33.333 6.32 0.00 35.38 2.83
150 151 8.020819 TGCTAGAACTTTGAAAATACGGATTTG 58.979 33.333 6.32 0.00 35.38 2.32
151 152 8.021396 GTGCTAGAACTTTGAAAATACGGATTT 58.979 33.333 0.00 0.00 36.82 2.17
152 153 7.361799 GGTGCTAGAACTTTGAAAATACGGATT 60.362 37.037 0.00 0.00 0.00 3.01
153 154 6.093633 GGTGCTAGAACTTTGAAAATACGGAT 59.906 38.462 0.00 0.00 0.00 4.18
154 155 5.410439 GGTGCTAGAACTTTGAAAATACGGA 59.590 40.000 0.00 0.00 0.00 4.69
155 156 5.180492 TGGTGCTAGAACTTTGAAAATACGG 59.820 40.000 0.00 0.00 0.00 4.02
156 157 6.236017 TGGTGCTAGAACTTTGAAAATACG 57.764 37.500 0.00 0.00 0.00 3.06
157 158 8.135529 AGTTTGGTGCTAGAACTTTGAAAATAC 58.864 33.333 0.00 0.00 29.81 1.89
158 159 8.134895 CAGTTTGGTGCTAGAACTTTGAAAATA 58.865 33.333 0.00 0.00 31.63 1.40
159 160 6.980397 CAGTTTGGTGCTAGAACTTTGAAAAT 59.020 34.615 0.00 0.00 31.63 1.82
160 161 6.151985 TCAGTTTGGTGCTAGAACTTTGAAAA 59.848 34.615 0.00 0.00 31.63 2.29
161 162 5.650266 TCAGTTTGGTGCTAGAACTTTGAAA 59.350 36.000 0.00 0.00 31.63 2.69
162 163 5.189928 TCAGTTTGGTGCTAGAACTTTGAA 58.810 37.500 0.00 0.00 31.63 2.69
163 164 4.776349 TCAGTTTGGTGCTAGAACTTTGA 58.224 39.130 0.00 0.00 31.63 2.69
164 165 5.163663 TGTTCAGTTTGGTGCTAGAACTTTG 60.164 40.000 0.00 0.00 37.03 2.77
165 166 4.947388 TGTTCAGTTTGGTGCTAGAACTTT 59.053 37.500 0.00 0.00 37.03 2.66
166 167 4.523083 TGTTCAGTTTGGTGCTAGAACTT 58.477 39.130 0.00 0.00 37.03 2.66
167 168 4.150897 TGTTCAGTTTGGTGCTAGAACT 57.849 40.909 0.00 0.00 37.03 3.01
168 169 4.083271 GGATGTTCAGTTTGGTGCTAGAAC 60.083 45.833 0.00 0.00 36.73 3.01
169 170 4.072131 GGATGTTCAGTTTGGTGCTAGAA 58.928 43.478 0.00 0.00 0.00 2.10
170 171 3.072330 TGGATGTTCAGTTTGGTGCTAGA 59.928 43.478 0.00 0.00 0.00 2.43
171 172 3.411446 TGGATGTTCAGTTTGGTGCTAG 58.589 45.455 0.00 0.00 0.00 3.42
172 173 3.411446 CTGGATGTTCAGTTTGGTGCTA 58.589 45.455 0.00 0.00 0.00 3.49
173 174 2.233271 CTGGATGTTCAGTTTGGTGCT 58.767 47.619 0.00 0.00 0.00 4.40
174 175 1.336240 GCTGGATGTTCAGTTTGGTGC 60.336 52.381 0.00 0.00 37.12 5.01
175 176 1.069022 CGCTGGATGTTCAGTTTGGTG 60.069 52.381 0.00 0.00 37.12 4.17
176 177 1.238439 CGCTGGATGTTCAGTTTGGT 58.762 50.000 0.00 0.00 37.12 3.67
177 178 1.238439 ACGCTGGATGTTCAGTTTGG 58.762 50.000 0.00 0.00 37.12 3.28
178 179 3.498397 ACTTACGCTGGATGTTCAGTTTG 59.502 43.478 0.00 0.00 37.12 2.93
179 180 3.740115 ACTTACGCTGGATGTTCAGTTT 58.260 40.909 0.00 0.00 37.12 2.66
180 181 3.402628 ACTTACGCTGGATGTTCAGTT 57.597 42.857 0.00 0.00 37.12 3.16
181 182 3.402628 AACTTACGCTGGATGTTCAGT 57.597 42.857 0.00 0.00 37.12 3.41
182 183 6.923508 TCATATAACTTACGCTGGATGTTCAG 59.076 38.462 0.00 0.00 37.79 3.02
183 184 6.700081 GTCATATAACTTACGCTGGATGTTCA 59.300 38.462 0.00 0.00 0.00 3.18
184 185 6.145696 GGTCATATAACTTACGCTGGATGTTC 59.854 42.308 0.00 0.00 0.00 3.18
185 186 5.989777 GGTCATATAACTTACGCTGGATGTT 59.010 40.000 0.00 0.00 0.00 2.71
186 187 5.304614 AGGTCATATAACTTACGCTGGATGT 59.695 40.000 0.00 0.00 0.00 3.06
187 188 5.784177 AGGTCATATAACTTACGCTGGATG 58.216 41.667 0.00 0.00 0.00 3.51
188 189 5.047235 GGAGGTCATATAACTTACGCTGGAT 60.047 44.000 0.00 0.00 0.00 3.41
189 190 4.280174 GGAGGTCATATAACTTACGCTGGA 59.720 45.833 0.00 0.00 0.00 3.86
190 191 4.557205 GGAGGTCATATAACTTACGCTGG 58.443 47.826 0.00 0.00 0.00 4.85
191 192 4.227538 CGGAGGTCATATAACTTACGCTG 58.772 47.826 0.00 0.00 0.00 5.18
192 193 4.500603 CGGAGGTCATATAACTTACGCT 57.499 45.455 0.00 0.00 0.00 5.07
209 210 8.494016 AAGAAAAAGAAGTAATATCACCGGAG 57.506 34.615 9.46 0.00 0.00 4.63
210 211 8.857694 AAAGAAAAAGAAGTAATATCACCGGA 57.142 30.769 9.46 0.00 0.00 5.14
211 212 8.947115 AGAAAGAAAAAGAAGTAATATCACCGG 58.053 33.333 0.00 0.00 0.00 5.28
218 219 8.780249 CCCACGAAGAAAGAAAAAGAAGTAATA 58.220 33.333 0.00 0.00 0.00 0.98
219 220 7.255486 CCCCACGAAGAAAGAAAAAGAAGTAAT 60.255 37.037 0.00 0.00 0.00 1.89
220 221 6.038936 CCCCACGAAGAAAGAAAAAGAAGTAA 59.961 38.462 0.00 0.00 0.00 2.24
221 222 5.529800 CCCCACGAAGAAAGAAAAAGAAGTA 59.470 40.000 0.00 0.00 0.00 2.24
222 223 4.338400 CCCCACGAAGAAAGAAAAAGAAGT 59.662 41.667 0.00 0.00 0.00 3.01
223 224 4.578928 TCCCCACGAAGAAAGAAAAAGAAG 59.421 41.667 0.00 0.00 0.00 2.85
224 225 4.528920 TCCCCACGAAGAAAGAAAAAGAA 58.471 39.130 0.00 0.00 0.00 2.52
225 226 4.159244 TCCCCACGAAGAAAGAAAAAGA 57.841 40.909 0.00 0.00 0.00 2.52
855 880 1.781555 CATCCGTCACGTCTGCAAC 59.218 57.895 0.00 0.00 0.00 4.17
1026 1051 9.649167 AAGAGAAAGCAATGAATAAAAATCCAG 57.351 29.630 0.00 0.00 0.00 3.86
1031 1056 8.641541 ACCAGAAGAGAAAGCAATGAATAAAAA 58.358 29.630 0.00 0.00 0.00 1.94
1108 1134 4.307432 TGCAGGAGTAAGAAAGAAACTCG 58.693 43.478 0.00 0.00 40.44 4.18
1128 1154 3.308866 GCAGCATGGATGAAAAATCTTGC 59.691 43.478 0.00 0.00 35.86 4.01
1308 1339 7.040201 CCAAAGATAAACCATGTATCAGGATGG 60.040 40.741 0.00 0.00 44.23 3.51
1310 1341 7.503566 CACCAAAGATAAACCATGTATCAGGAT 59.496 37.037 11.50 0.00 31.49 3.24
1312 1343 6.828273 TCACCAAAGATAAACCATGTATCAGG 59.172 38.462 5.03 5.86 31.49 3.86
1313 1344 7.864108 TCACCAAAGATAAACCATGTATCAG 57.136 36.000 5.03 0.00 31.49 2.90
1315 1346 9.520204 CATTTCACCAAAGATAAACCATGTATC 57.480 33.333 0.00 0.00 0.00 2.24
1316 1347 7.981225 GCATTTCACCAAAGATAAACCATGTAT 59.019 33.333 0.00 0.00 0.00 2.29
1328 1359 1.344114 GCCTTGGCATTTCACCAAAGA 59.656 47.619 6.79 0.00 46.24 2.52
1356 1387 2.519013 CTGGGGAAAAAGAAGACCAGG 58.481 52.381 0.00 0.00 41.28 4.45
1360 1391 2.353109 GCATGCTGGGGAAAAAGAAGAC 60.353 50.000 11.37 0.00 0.00 3.01
1452 1483 5.301835 AGGATGGGACTGAATAGTGAATG 57.698 43.478 0.00 0.00 37.25 2.67
1453 1484 4.349342 GGAGGATGGGACTGAATAGTGAAT 59.651 45.833 0.00 0.00 37.25 2.57
1467 1498 1.379642 GCTTTTCGCAGGAGGATGGG 61.380 60.000 0.00 0.00 38.92 4.00
1512 1543 7.807977 TTATGTGAATTCCAGGAGCTAAATC 57.192 36.000 2.27 0.00 0.00 2.17
1545 1576 1.345415 CTTGCAAAAAGGGCAGGATGT 59.655 47.619 0.00 0.00 43.05 3.06
1546 1577 1.619827 TCTTGCAAAAAGGGCAGGATG 59.380 47.619 0.00 0.00 41.64 3.51
1547 1578 2.014010 TCTTGCAAAAAGGGCAGGAT 57.986 45.000 0.00 0.00 41.64 3.24
1548 1579 1.688197 CTTCTTGCAAAAAGGGCAGGA 59.312 47.619 4.50 0.00 44.29 3.86
1549 1580 1.413812 ACTTCTTGCAAAAAGGGCAGG 59.586 47.619 16.59 0.00 43.05 4.85
1550 1581 2.476821 CACTTCTTGCAAAAAGGGCAG 58.523 47.619 16.59 0.00 43.05 4.85
1551 1582 2.600470 CACTTCTTGCAAAAAGGGCA 57.400 45.000 16.59 0.00 40.00 5.36
1565 1596 2.095372 GGTAGTAAATGGCACGCACTTC 59.905 50.000 0.00 0.00 0.00 3.01
1568 1599 1.444836 TGGTAGTAAATGGCACGCAC 58.555 50.000 0.00 0.00 0.00 5.34
1569 1600 2.093181 AGATGGTAGTAAATGGCACGCA 60.093 45.455 0.00 0.00 0.00 5.24
1570 1601 2.287915 CAGATGGTAGTAAATGGCACGC 59.712 50.000 0.00 0.00 0.00 5.34
1571 1602 3.792401 TCAGATGGTAGTAAATGGCACG 58.208 45.455 0.00 0.00 0.00 5.34
1739 1772 4.574013 CCTCAAAGAACTCATAGGATGCAC 59.426 45.833 0.00 0.00 0.00 4.57
1763 1796 0.179134 CTCCGGGAGAAACTGCGTAG 60.179 60.000 19.57 0.00 0.00 3.51
1800 1833 8.948631 ATGTGACACAAAACTATATACTCCTG 57.051 34.615 13.23 0.00 0.00 3.86
1802 1835 9.988350 CAAATGTGACACAAAACTATATACTCC 57.012 33.333 13.23 0.00 0.00 3.85
1809 1842 7.537306 GCGATTACAAATGTGACACAAAACTAT 59.463 33.333 13.23 2.57 0.00 2.12
1811 1844 5.685511 GCGATTACAAATGTGACACAAAACT 59.314 36.000 13.23 0.00 0.00 2.66
1812 1845 5.685511 AGCGATTACAAATGTGACACAAAAC 59.314 36.000 13.23 0.00 0.00 2.43
1814 1847 5.211454 CAGCGATTACAAATGTGACACAAA 58.789 37.500 13.23 2.01 0.00 2.83
1815 1848 4.274705 ACAGCGATTACAAATGTGACACAA 59.725 37.500 13.23 0.00 0.00 3.33
1902 1962 6.173339 GCATTATTAGCAGGGCTATACTCAA 58.827 40.000 0.00 0.00 41.01 3.02
2108 2171 1.134560 GGTACTTCCTACGTCTGCTGG 59.865 57.143 0.00 0.00 0.00 4.85
2116 2179 0.179145 CACAGGCGGTACTTCCTACG 60.179 60.000 6.21 0.00 0.00 3.51
2131 2194 1.134759 CCTCTGATGAGAGCCACACAG 60.135 57.143 3.27 0.00 44.11 3.66
2141 2204 2.169978 TGATCTGGTTGCCTCTGATGAG 59.830 50.000 0.00 0.00 39.92 2.90
2152 2215 4.751060 CATTCCCAACAATGATCTGGTTG 58.249 43.478 14.02 14.02 41.10 3.77
2185 2248 0.815095 TCCTTGAGATTACGCAGCGA 59.185 50.000 24.65 0.00 0.00 4.93
2194 2257 1.978580 ACCTGACCGTTCCTTGAGATT 59.021 47.619 0.00 0.00 0.00 2.40
2195 2258 1.645710 ACCTGACCGTTCCTTGAGAT 58.354 50.000 0.00 0.00 0.00 2.75
2206 2269 2.096174 CGAGAAGAGAAGTACCTGACCG 59.904 54.545 0.00 0.00 0.00 4.79
2224 2287 1.215647 GTACCAGCCAGACACCGAG 59.784 63.158 0.00 0.00 0.00 4.63
2276 2339 6.824958 AGATAAAACCAGGCACTATTAGGA 57.175 37.500 0.00 0.00 36.02 2.94
2277 2340 7.339466 ACAAAGATAAAACCAGGCACTATTAGG 59.661 37.037 0.00 0.00 36.02 2.69
2283 2346 4.649218 ACAACAAAGATAAAACCAGGCACT 59.351 37.500 0.00 0.00 43.88 4.40
2298 2361 5.036737 CAGTTGCCTTAGAACACAACAAAG 58.963 41.667 7.39 0.00 43.74 2.77
2344 2407 1.301716 TCTTTCAGCCGGCACACTC 60.302 57.895 31.54 0.00 0.00 3.51
2410 2473 1.613317 TTCCACCATCGATGCGACCT 61.613 55.000 20.25 0.00 39.18 3.85
2535 2609 2.014128 GTCAGCCGGCTATTGCTTTTA 58.986 47.619 32.30 3.03 39.59 1.52
2683 2757 7.389053 AGGAACTCAGTTTCATCAGTTATGTTC 59.611 37.037 0.00 0.00 36.89 3.18
2764 2838 7.874016 AGCAAACAATAATTGATCAAAGCTTCA 59.126 29.630 13.09 0.00 0.00 3.02
2777 2851 8.959548 TCATAGTCATCACAGCAAACAATAATT 58.040 29.630 0.00 0.00 0.00 1.40
2818 2892 2.257034 GTCATTTCGAGTCCGTGTACC 58.743 52.381 0.00 0.00 37.05 3.34
2826 2900 6.764877 TGAAACTAACTGTCATTTCGAGTC 57.235 37.500 0.00 0.00 34.46 3.36
2849 2923 0.309922 TCGAGAGAAACGCGACTGTT 59.690 50.000 15.93 0.09 44.80 3.16
2891 2969 7.855784 ACCCAAATCTACAAAATTCTTCCTT 57.144 32.000 0.00 0.00 0.00 3.36
2970 3048 6.594788 ACCTTCAGCAAATCATACAACAAT 57.405 33.333 0.00 0.00 0.00 2.71
2973 3051 6.371548 TCTGTACCTTCAGCAAATCATACAAC 59.628 38.462 0.00 0.00 35.63 3.32
3035 3113 9.753674 TTCTGGAAAAATTATGAAGTACTCCAT 57.246 29.630 0.00 0.00 30.41 3.41
3036 3114 9.581289 TTTCTGGAAAAATTATGAAGTACTCCA 57.419 29.630 0.00 0.00 0.00 3.86
3066 3144 8.408601 AGTTCATATTCATGCATTCAGGTTAAC 58.591 33.333 0.00 0.00 31.73 2.01
3076 3154 6.835488 ACCAGGTTAAGTTCATATTCATGCAT 59.165 34.615 0.00 0.00 31.73 3.96
3094 3172 0.923358 TCCAACCAACTGACCAGGTT 59.077 50.000 0.00 0.00 46.03 3.50
3150 3228 6.996282 CCAGGTTCTTCAAAGTAGGTTCTTTA 59.004 38.462 0.00 0.00 36.12 1.85
3225 3306 4.938226 AGCACAAATTCCTAGCTACACTTC 59.062 41.667 0.00 0.00 33.06 3.01
3234 3315 2.996631 AGGCAGAGCACAAATTCCTAG 58.003 47.619 0.00 0.00 0.00 3.02
3310 3391 9.814899 TGTTTCCATATGATATTTTCGCAATTT 57.185 25.926 3.65 0.00 0.00 1.82
3311 3392 9.814899 TTGTTTCCATATGATATTTTCGCAATT 57.185 25.926 3.65 0.00 0.00 2.32
3312 3393 9.814899 TTTGTTTCCATATGATATTTTCGCAAT 57.185 25.926 3.65 0.00 0.00 3.56
3313 3394 9.081997 GTTTGTTTCCATATGATATTTTCGCAA 57.918 29.630 3.65 0.00 0.00 4.85
3314 3395 8.246871 TGTTTGTTTCCATATGATATTTTCGCA 58.753 29.630 3.65 0.00 0.00 5.10
3315 3396 8.627487 TGTTTGTTTCCATATGATATTTTCGC 57.373 30.769 3.65 0.00 0.00 4.70
3319 3400 9.748708 CCGAATGTTTGTTTCCATATGATATTT 57.251 29.630 3.65 0.00 0.00 1.40
3320 3401 8.912988 ACCGAATGTTTGTTTCCATATGATATT 58.087 29.630 3.65 0.00 0.00 1.28
3321 3402 8.352201 CACCGAATGTTTGTTTCCATATGATAT 58.648 33.333 3.65 0.00 0.00 1.63
3322 3403 7.201776 CCACCGAATGTTTGTTTCCATATGATA 60.202 37.037 3.65 0.00 0.00 2.15
3323 3404 6.405731 CCACCGAATGTTTGTTTCCATATGAT 60.406 38.462 3.65 0.00 0.00 2.45
3324 3405 5.105957 CCACCGAATGTTTGTTTCCATATGA 60.106 40.000 3.65 0.00 0.00 2.15
3325 3406 5.101628 CCACCGAATGTTTGTTTCCATATG 58.898 41.667 0.00 0.00 0.00 1.78
3326 3407 5.013547 TCCACCGAATGTTTGTTTCCATAT 58.986 37.500 0.00 0.00 0.00 1.78
3327 3408 4.399219 TCCACCGAATGTTTGTTTCCATA 58.601 39.130 0.00 0.00 0.00 2.74
3328 3409 3.226777 TCCACCGAATGTTTGTTTCCAT 58.773 40.909 0.00 0.00 0.00 3.41
3329 3410 2.656002 TCCACCGAATGTTTGTTTCCA 58.344 42.857 0.00 0.00 0.00 3.53
3330 3411 3.719173 TTCCACCGAATGTTTGTTTCC 57.281 42.857 0.00 0.00 0.00 3.13
3331 3412 3.799963 GGTTTCCACCGAATGTTTGTTTC 59.200 43.478 0.00 0.00 31.60 2.78
3332 3413 3.787785 GGTTTCCACCGAATGTTTGTTT 58.212 40.909 0.00 0.00 31.60 2.83
3333 3414 3.446310 GGTTTCCACCGAATGTTTGTT 57.554 42.857 0.00 0.00 31.60 2.83
3344 3425 3.759618 TGATATTTTCACCGGTTTCCACC 59.240 43.478 2.97 0.00 40.16 4.61
3345 3426 5.576447 ATGATATTTTCACCGGTTTCCAC 57.424 39.130 2.97 0.00 37.11 4.02
3346 3427 7.558081 TCAATATGATATTTTCACCGGTTTCCA 59.442 33.333 2.97 0.00 37.11 3.53
3347 3428 7.936584 TCAATATGATATTTTCACCGGTTTCC 58.063 34.615 2.97 0.00 37.11 3.13
3348 3429 9.796120 TTTCAATATGATATTTTCACCGGTTTC 57.204 29.630 2.97 0.00 37.11 2.78
3349 3430 9.581099 GTTTCAATATGATATTTTCACCGGTTT 57.419 29.630 2.97 0.00 37.11 3.27
3350 3431 8.194769 GGTTTCAATATGATATTTTCACCGGTT 58.805 33.333 2.97 0.00 37.11 4.44
3351 3432 7.340743 TGGTTTCAATATGATATTTTCACCGGT 59.659 33.333 0.00 0.00 37.11 5.28
3352 3433 7.711846 TGGTTTCAATATGATATTTTCACCGG 58.288 34.615 0.00 0.00 37.11 5.28
3353 3434 7.379529 GCTGGTTTCAATATGATATTTTCACCG 59.620 37.037 0.00 1.30 37.11 4.94
3354 3435 8.416329 AGCTGGTTTCAATATGATATTTTCACC 58.584 33.333 0.00 2.88 37.11 4.02
3355 3436 9.807649 AAGCTGGTTTCAATATGATATTTTCAC 57.192 29.630 0.00 0.00 37.11 3.18
3360 3441 9.101655 GCAAAAAGCTGGTTTCAATATGATATT 57.898 29.630 5.19 0.00 41.15 1.28
3361 3442 8.652810 GCAAAAAGCTGGTTTCAATATGATAT 57.347 30.769 5.19 0.00 41.15 1.63
3363 3444 6.973229 GCAAAAAGCTGGTTTCAATATGAT 57.027 33.333 5.19 0.00 41.15 2.45
3378 3459 5.175673 GGTGTGTGAATTTAGAGCAAAAAGC 59.824 40.000 0.00 0.00 46.19 3.51
3379 3460 6.507023 AGGTGTGTGAATTTAGAGCAAAAAG 58.493 36.000 0.00 0.00 0.00 2.27
3380 3461 6.321181 AGAGGTGTGTGAATTTAGAGCAAAAA 59.679 34.615 0.00 0.00 0.00 1.94
3381 3462 5.827797 AGAGGTGTGTGAATTTAGAGCAAAA 59.172 36.000 0.00 0.00 0.00 2.44
3382 3463 5.376625 AGAGGTGTGTGAATTTAGAGCAAA 58.623 37.500 0.00 0.00 0.00 3.68
3383 3464 4.973168 AGAGGTGTGTGAATTTAGAGCAA 58.027 39.130 0.00 0.00 0.00 3.91
3384 3465 4.569943 GAGAGGTGTGTGAATTTAGAGCA 58.430 43.478 0.00 0.00 0.00 4.26
3385 3466 3.614616 CGAGAGGTGTGTGAATTTAGAGC 59.385 47.826 0.00 0.00 0.00 4.09
3386 3467 4.810790 ACGAGAGGTGTGTGAATTTAGAG 58.189 43.478 0.00 0.00 0.00 2.43
3502 3583 2.977914 TGATGAGCTAAACAGGCAGAC 58.022 47.619 0.00 0.00 0.00 3.51
3510 3591 5.921962 AAGGGGAATTTGATGAGCTAAAC 57.078 39.130 0.00 0.00 0.00 2.01
3518 3599 6.991938 TGTCAAGTTAAAGGGGAATTTGATG 58.008 36.000 0.00 0.00 35.71 3.07
3535 3616 5.586243 GGTCACAGCAATACATATGTCAAGT 59.414 40.000 12.68 1.35 0.00 3.16
3616 3699 0.389817 GTGGCTCTACGCACATGTCA 60.390 55.000 0.00 0.00 41.67 3.58
3703 3786 4.671590 TCGGCTCTGGACGGGTCA 62.672 66.667 0.75 0.00 45.36 4.02
4060 4178 7.029563 ACTCAAATAACTTTTCCGAATGCATC 58.970 34.615 0.00 0.00 0.00 3.91
4061 4179 6.924111 ACTCAAATAACTTTTCCGAATGCAT 58.076 32.000 0.00 0.00 0.00 3.96
4063 4181 6.469275 GCTACTCAAATAACTTTTCCGAATGC 59.531 38.462 0.00 0.00 0.00 3.56
4064 4182 7.693951 CAGCTACTCAAATAACTTTTCCGAATG 59.306 37.037 0.00 0.00 0.00 2.67
4065 4183 7.606456 TCAGCTACTCAAATAACTTTTCCGAAT 59.394 33.333 0.00 0.00 0.00 3.34
4067 4185 6.460781 TCAGCTACTCAAATAACTTTTCCGA 58.539 36.000 0.00 0.00 0.00 4.55
4068 4186 6.721571 TCAGCTACTCAAATAACTTTTCCG 57.278 37.500 0.00 0.00 0.00 4.30
4132 4254 5.584649 CGTTGGAATGAAGCATTAAGGAGTA 59.415 40.000 0.00 0.00 33.90 2.59
4133 4255 4.396166 CGTTGGAATGAAGCATTAAGGAGT 59.604 41.667 0.00 0.00 33.90 3.85
4134 4256 4.635765 TCGTTGGAATGAAGCATTAAGGAG 59.364 41.667 0.00 0.00 33.90 3.69
4135 4257 4.584874 TCGTTGGAATGAAGCATTAAGGA 58.415 39.130 0.00 0.00 33.90 3.36
4185 4307 5.125100 TCAATCCACTGCAACAATCTTTC 57.875 39.130 0.00 0.00 0.00 2.62
4205 4327 5.947566 TCCAATTGCAGAAATCTTCTCATCA 59.052 36.000 0.00 0.00 38.11 3.07
4206 4328 6.446781 TCCAATTGCAGAAATCTTCTCATC 57.553 37.500 0.00 0.00 38.11 2.92
4208 4330 7.469594 GCATATCCAATTGCAGAAATCTTCTCA 60.470 37.037 0.00 0.00 38.11 3.27
4209 4331 6.862090 GCATATCCAATTGCAGAAATCTTCTC 59.138 38.462 0.00 0.00 38.11 2.87
4210 4332 6.322969 TGCATATCCAATTGCAGAAATCTTCT 59.677 34.615 0.00 0.00 43.54 2.85
4211 4333 6.509656 TGCATATCCAATTGCAGAAATCTTC 58.490 36.000 0.00 0.00 43.54 2.87
4212 4334 6.474140 TGCATATCCAATTGCAGAAATCTT 57.526 33.333 0.00 0.00 43.54 2.40
4221 4343 5.100259 GTGAGCATATGCATATCCAATTGC 58.900 41.667 28.62 16.44 45.16 3.56
4222 4344 5.122711 TCGTGAGCATATGCATATCCAATTG 59.877 40.000 28.62 7.27 45.16 2.32
4223 4345 5.247862 TCGTGAGCATATGCATATCCAATT 58.752 37.500 28.62 5.21 45.16 2.32
4224 4346 4.835678 TCGTGAGCATATGCATATCCAAT 58.164 39.130 28.62 5.98 45.16 3.16
4225 4347 4.021192 TCTCGTGAGCATATGCATATCCAA 60.021 41.667 28.62 7.26 45.16 3.53
4226 4348 3.511146 TCTCGTGAGCATATGCATATCCA 59.489 43.478 28.62 14.74 45.16 3.41
4227 4349 4.115401 TCTCGTGAGCATATGCATATCC 57.885 45.455 28.62 7.96 45.16 2.59
4228 4350 5.405797 TCTTCTCGTGAGCATATGCATATC 58.594 41.667 28.62 17.87 45.16 1.63
4229 4351 5.397142 TCTTCTCGTGAGCATATGCATAT 57.603 39.130 28.62 13.63 45.16 1.78
4230 4352 4.853924 TCTTCTCGTGAGCATATGCATA 57.146 40.909 28.62 14.48 45.16 3.14
4231 4353 3.740631 TCTTCTCGTGAGCATATGCAT 57.259 42.857 28.62 14.19 45.16 3.96
4232 4354 3.740631 ATCTTCTCGTGAGCATATGCA 57.259 42.857 28.62 7.07 45.16 3.96
4233 4355 4.150274 CAGAATCTTCTCGTGAGCATATGC 59.850 45.833 20.36 20.36 36.99 3.14
4234 4356 4.685165 CCAGAATCTTCTCGTGAGCATATG 59.315 45.833 0.00 0.00 34.74 1.78
4235 4357 4.586421 TCCAGAATCTTCTCGTGAGCATAT 59.414 41.667 0.00 0.00 34.74 1.78
4236 4358 3.954258 TCCAGAATCTTCTCGTGAGCATA 59.046 43.478 0.00 0.00 34.74 3.14
4237 4359 2.762887 TCCAGAATCTTCTCGTGAGCAT 59.237 45.455 0.00 0.00 34.74 3.79
4238 4360 2.171003 TCCAGAATCTTCTCGTGAGCA 58.829 47.619 0.00 0.00 34.74 4.26
4239 4361 2.949451 TCCAGAATCTTCTCGTGAGC 57.051 50.000 0.00 0.00 34.74 4.26
4240 4362 5.473931 TCTTTTCCAGAATCTTCTCGTGAG 58.526 41.667 0.00 0.00 34.74 3.51
4241 4363 5.468540 TCTTTTCCAGAATCTTCTCGTGA 57.531 39.130 0.00 0.00 34.74 4.35
4242 4364 6.545504 TTTCTTTTCCAGAATCTTCTCGTG 57.454 37.500 0.00 0.00 41.42 4.35
4243 4365 7.164803 AGATTTCTTTTCCAGAATCTTCTCGT 58.835 34.615 0.00 0.00 41.42 4.18
4244 4366 7.608308 AGATTTCTTTTCCAGAATCTTCTCG 57.392 36.000 0.00 0.00 41.42 4.04
4245 4367 8.458052 GGAAGATTTCTTTTCCAGAATCTTCTC 58.542 37.037 24.85 16.66 44.20 2.87
4246 4368 7.946776 TGGAAGATTTCTTTTCCAGAATCTTCT 59.053 33.333 24.85 9.11 45.87 2.85
4247 4369 8.115490 TGGAAGATTTCTTTTCCAGAATCTTC 57.885 34.615 20.92 20.92 45.87 2.87
4256 4378 5.690997 ACTCGTTGGAAGATTTCTTTTCC 57.309 39.130 0.00 0.00 42.56 3.13
4257 4379 6.147985 AGCTACTCGTTGGAAGATTTCTTTTC 59.852 38.462 0.00 0.00 36.11 2.29
4258 4380 5.998363 AGCTACTCGTTGGAAGATTTCTTTT 59.002 36.000 0.00 0.00 36.11 2.27
4259 4381 5.409826 CAGCTACTCGTTGGAAGATTTCTTT 59.590 40.000 0.00 0.00 36.11 2.52
4260 4382 4.932200 CAGCTACTCGTTGGAAGATTTCTT 59.068 41.667 0.00 0.00 39.23 2.52
4261 4383 4.220821 TCAGCTACTCGTTGGAAGATTTCT 59.779 41.667 0.00 0.00 0.00 2.52
4262 4384 4.495422 TCAGCTACTCGTTGGAAGATTTC 58.505 43.478 0.00 0.00 0.00 2.17
4263 4385 4.537135 TCAGCTACTCGTTGGAAGATTT 57.463 40.909 0.00 0.00 0.00 2.17
4264 4386 4.744795 ATCAGCTACTCGTTGGAAGATT 57.255 40.909 0.00 0.00 0.00 2.40
4265 4387 4.744795 AATCAGCTACTCGTTGGAAGAT 57.255 40.909 0.00 0.00 0.00 2.40
4266 4388 4.220821 AGAAATCAGCTACTCGTTGGAAGA 59.779 41.667 0.00 0.00 0.00 2.87
4267 4389 4.328440 CAGAAATCAGCTACTCGTTGGAAG 59.672 45.833 0.00 0.00 0.00 3.46
4268 4390 4.245660 CAGAAATCAGCTACTCGTTGGAA 58.754 43.478 0.00 0.00 0.00 3.53
4269 4391 3.849911 CAGAAATCAGCTACTCGTTGGA 58.150 45.455 0.00 0.00 0.00 3.53
4270 4392 2.349886 GCAGAAATCAGCTACTCGTTGG 59.650 50.000 0.00 0.00 0.00 3.77
4271 4393 2.995939 TGCAGAAATCAGCTACTCGTTG 59.004 45.455 0.00 0.00 0.00 4.10
4272 4394 3.319137 TGCAGAAATCAGCTACTCGTT 57.681 42.857 0.00 0.00 0.00 3.85
4273 4395 3.319137 TTGCAGAAATCAGCTACTCGT 57.681 42.857 0.00 0.00 0.00 4.18
4274 4396 4.871993 AATTGCAGAAATCAGCTACTCG 57.128 40.909 0.00 0.00 0.00 4.18
4275 4397 6.093219 TCAGAAATTGCAGAAATCAGCTACTC 59.907 38.462 0.00 0.00 0.00 2.59
4276 4398 5.942236 TCAGAAATTGCAGAAATCAGCTACT 59.058 36.000 0.00 0.00 0.00 2.57
4277 4399 6.187125 TCAGAAATTGCAGAAATCAGCTAC 57.813 37.500 0.00 0.00 0.00 3.58
4278 4400 6.822667 TTCAGAAATTGCAGAAATCAGCTA 57.177 33.333 0.00 0.00 0.00 3.32
4279 4401 5.717078 TTCAGAAATTGCAGAAATCAGCT 57.283 34.783 0.00 0.00 0.00 4.24
4280 4402 6.963049 ATTTCAGAAATTGCAGAAATCAGC 57.037 33.333 10.28 0.00 36.30 4.26
4291 4413 5.406175 ACATTGGTTGCGATTTCAGAAATTG 59.594 36.000 16.37 16.37 35.72 2.32
4292 4414 5.406175 CACATTGGTTGCGATTTCAGAAATT 59.594 36.000 9.84 0.00 0.00 1.82
4293 4415 4.925054 CACATTGGTTGCGATTTCAGAAAT 59.075 37.500 8.20 8.20 0.00 2.17
4294 4416 4.202101 ACACATTGGTTGCGATTTCAGAAA 60.202 37.500 0.00 0.00 0.00 2.52
4295 4417 3.317711 ACACATTGGTTGCGATTTCAGAA 59.682 39.130 0.00 0.00 0.00 3.02
4296 4418 2.884012 ACACATTGGTTGCGATTTCAGA 59.116 40.909 0.00 0.00 0.00 3.27
4297 4419 3.287312 ACACATTGGTTGCGATTTCAG 57.713 42.857 0.00 0.00 0.00 3.02
4298 4420 3.379240 CAACACATTGGTTGCGATTTCA 58.621 40.909 5.47 0.00 41.37 2.69
4307 4429 3.902881 TTTTCCTGCAACACATTGGTT 57.097 38.095 0.00 0.00 36.23 3.67
4308 4430 3.387374 TCATTTTCCTGCAACACATTGGT 59.613 39.130 0.00 0.00 36.23 3.67
4309 4431 3.992643 TCATTTTCCTGCAACACATTGG 58.007 40.909 0.00 0.00 36.23 3.16
4310 4432 5.231702 TCATCATTTTCCTGCAACACATTG 58.768 37.500 0.00 0.00 38.99 2.82
4311 4433 5.471556 TCATCATTTTCCTGCAACACATT 57.528 34.783 0.00 0.00 0.00 2.71
4312 4434 4.081862 CCTCATCATTTTCCTGCAACACAT 60.082 41.667 0.00 0.00 0.00 3.21
4313 4435 3.256383 CCTCATCATTTTCCTGCAACACA 59.744 43.478 0.00 0.00 0.00 3.72
4314 4436 3.256631 ACCTCATCATTTTCCTGCAACAC 59.743 43.478 0.00 0.00 0.00 3.32
4387 4509 6.895756 TCTCTGCTAAGTAATCCTTCCTTGTA 59.104 38.462 0.00 0.00 34.46 2.41
4433 4555 6.486253 TCTCATGTTGATGCAGAGTAAAAC 57.514 37.500 0.00 0.00 0.00 2.43
4470 4593 4.884164 AGCAGCTTGTTTGTAAGAGAGTTT 59.116 37.500 0.00 0.00 0.00 2.66
4476 4599 5.364778 TGAAGTAGCAGCTTGTTTGTAAGA 58.635 37.500 0.00 0.00 0.00 2.10
4488 4611 3.338249 TCTTGGATGTTGAAGTAGCAGC 58.662 45.455 0.00 0.00 0.00 5.25
4504 4627 1.202806 TCAGGGTTGCAGTTCTCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
4541 4664 4.082190 TCTGCTTGCTCTTGTACGAATAGT 60.082 41.667 0.00 0.00 0.00 2.12
4542 4665 4.424626 TCTGCTTGCTCTTGTACGAATAG 58.575 43.478 0.00 0.00 0.00 1.73
4544 4667 3.319137 TCTGCTTGCTCTTGTACGAAT 57.681 42.857 0.00 0.00 0.00 3.34
4548 4671 5.362556 TTTTGATCTGCTTGCTCTTGTAC 57.637 39.130 0.00 0.00 0.00 2.90
4575 4701 3.674997 ACGTATCTTGCATTGGTTCTGT 58.325 40.909 0.00 0.00 0.00 3.41
4585 4711 5.576447 TCTGAATCTGTACGTATCTTGCA 57.424 39.130 0.00 0.00 0.00 4.08
4613 4739 3.259625 AGTTGAGAGAAACTGGTAGAGCC 59.740 47.826 0.00 0.00 38.95 4.70
4631 4757 2.482721 GTCATCACCAAACCCGTAGTTG 59.517 50.000 0.00 0.00 39.19 3.16
4678 4804 6.460781 TCGGAGAGCTTTTGATTTACAGTAA 58.539 36.000 0.00 0.00 0.00 2.24
4679 4805 6.032956 TCGGAGAGCTTTTGATTTACAGTA 57.967 37.500 0.00 0.00 0.00 2.74
4680 4806 4.894784 TCGGAGAGCTTTTGATTTACAGT 58.105 39.130 0.00 0.00 0.00 3.55
4681 4807 5.163814 CCTTCGGAGAGCTTTTGATTTACAG 60.164 44.000 0.00 0.00 38.43 2.74
4682 4808 4.695455 CCTTCGGAGAGCTTTTGATTTACA 59.305 41.667 0.00 0.00 38.43 2.41
4683 4809 4.935808 TCCTTCGGAGAGCTTTTGATTTAC 59.064 41.667 0.00 0.00 38.43 2.01
4734 4860 1.793581 GCGTTGCATCGGTCATGAA 59.206 52.632 18.16 0.00 33.80 2.57
4783 4909 2.150719 ACGGGTGTGGGGATTGTGA 61.151 57.895 0.00 0.00 0.00 3.58
4808 4934 1.106944 TAGCTGATGATGCCGACCGA 61.107 55.000 0.00 0.00 0.00 4.69
4816 4942 1.665448 CGCTCGACCTAGCTGATGATG 60.665 57.143 0.00 0.00 40.49 3.07
4817 4943 0.595588 CGCTCGACCTAGCTGATGAT 59.404 55.000 0.00 0.00 40.49 2.45
4818 4944 2.025719 CGCTCGACCTAGCTGATGA 58.974 57.895 0.00 0.00 40.49 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.