Multiple sequence alignment - TraesCS2A01G354300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G354300 chr2A 100.000 2672 0 0 1 2672 595224788 595227459 0.000000e+00 4935.0
1 TraesCS2A01G354300 chr2A 82.464 690 77 30 1 676 710343847 710343188 4.990000e-157 564.0
2 TraesCS2A01G354300 chr2A 77.495 511 91 18 1011 1515 560679857 560679365 4.350000e-73 285.0
3 TraesCS2A01G354300 chr2A 77.017 409 65 19 1117 1515 559670059 559669670 9.690000e-50 207.0
4 TraesCS2A01G354300 chr2A 76.619 278 42 13 1243 1513 559829510 559829249 6.000000e-27 132.0
5 TraesCS2A01G354300 chr2D 94.231 1508 66 12 674 2178 455519023 455517534 0.000000e+00 2283.0
6 TraesCS2A01G354300 chr2D 77.027 518 99 14 1008 1515 427617542 427618049 2.030000e-71 279.0
7 TraesCS2A01G354300 chr2D 95.041 121 4 2 2434 2553 455517454 455517335 3.510000e-44 189.0
8 TraesCS2A01G354300 chr2D 92.523 107 5 2 2566 2672 455517287 455517184 1.660000e-32 150.0
9 TraesCS2A01G354300 chr2D 74.699 415 62 27 1119 1513 427932839 427933230 7.710000e-31 145.0
10 TraesCS2A01G354300 chr2D 76.978 278 41 13 1243 1513 427898354 427898615 1.290000e-28 137.0
11 TraesCS2A01G354300 chr2D 81.757 148 24 1 1369 1513 427915591 427915738 1.300000e-23 121.0
12 TraesCS2A01G354300 chr2D 81.250 144 24 1 1373 1513 427753858 427754001 2.170000e-21 113.0
13 TraesCS2A01G354300 chr2D 94.737 57 3 0 2289 2345 455517518 455517462 3.660000e-14 89.8
14 TraesCS2A01G354300 chr2B 90.995 1477 87 22 709 2178 536621090 536619653 0.000000e+00 1949.0
15 TraesCS2A01G354300 chr2B 82.807 570 52 20 1 548 58887848 58887303 4.030000e-128 468.0
16 TraesCS2A01G354300 chr2B 88.778 401 9 4 2289 2672 536619637 536619256 2.420000e-125 459.0
17 TraesCS2A01G354300 chr2B 76.773 409 66 19 1117 1515 512355091 512354702 4.510000e-48 202.0
18 TraesCS2A01G354300 chr2B 75.980 408 71 17 1117 1515 504773497 504773886 4.540000e-43 185.0
19 TraesCS2A01G354300 chr2B 72.987 559 101 33 1021 1557 504748232 504748762 1.660000e-32 150.0
20 TraesCS2A01G354300 chr2B 75.851 323 47 23 1243 1557 512372426 512372127 4.640000e-28 135.0
21 TraesCS2A01G354300 chr4A 82.754 690 73 32 1 676 18023892 18024549 8.300000e-160 573.0
22 TraesCS2A01G354300 chr4A 82.422 677 72 31 14 676 602103575 602102932 5.030000e-152 547.0
23 TraesCS2A01G354300 chr4A 97.059 34 0 1 490 522 650657633 650657666 3.720000e-04 56.5
24 TraesCS2A01G354300 chr5A 82.754 690 72 32 1 676 579311966 579312622 2.980000e-159 571.0
25 TraesCS2A01G354300 chr5A 94.595 37 1 1 490 525 456679227 456679191 3.720000e-04 56.5
26 TraesCS2A01G354300 chr7A 82.464 690 77 29 1 676 7302082 7302741 4.990000e-157 564.0
27 TraesCS2A01G354300 chr7A 94.737 38 1 1 641 678 28634398 28634434 1.030000e-04 58.4
28 TraesCS2A01G354300 chr3D 84.483 290 19 9 166 429 460192581 460192870 2.040000e-66 263.0
29 TraesCS2A01G354300 chr3D 85.500 200 25 3 478 676 460214481 460214677 3.490000e-49 206.0
30 TraesCS2A01G354300 chr3D 89.286 56 5 1 625 680 181451265 181451319 4.770000e-08 69.4
31 TraesCS2A01G354300 chrUn 85.714 182 19 5 253 429 1284598 1284419 4.540000e-43 185.0
32 TraesCS2A01G354300 chrUn 85.714 182 19 5 253 429 296262740 296262561 4.540000e-43 185.0
33 TraesCS2A01G354300 chr6D 90.385 52 5 0 625 676 128250993 128251044 4.770000e-08 69.4
34 TraesCS2A01G354300 chr6A 97.297 37 1 0 640 676 149963238 149963202 2.220000e-06 63.9
35 TraesCS2A01G354300 chr3B 94.595 37 1 1 490 525 750995240 750995204 3.720000e-04 56.5
36 TraesCS2A01G354300 chr3A 97.059 34 0 1 490 522 57560521 57560554 3.720000e-04 56.5
37 TraesCS2A01G354300 chr3A 97.059 34 0 1 490 522 714380857 714380890 3.720000e-04 56.5
38 TraesCS2A01G354300 chr7D 94.444 36 1 1 491 525 634928036 634928001 1.000000e-03 54.7
39 TraesCS2A01G354300 chr1D 94.444 36 1 1 491 525 27684149 27684114 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G354300 chr2A 595224788 595227459 2671 False 4935.00 4935 100.0000 1 2672 1 chr2A.!!$F1 2671
1 TraesCS2A01G354300 chr2A 710343188 710343847 659 True 564.00 564 82.4640 1 676 1 chr2A.!!$R4 675
2 TraesCS2A01G354300 chr2D 455517184 455519023 1839 True 677.95 2283 94.1330 674 2672 4 chr2D.!!$R1 1998
3 TraesCS2A01G354300 chr2D 427617542 427618049 507 False 279.00 279 77.0270 1008 1515 1 chr2D.!!$F1 507
4 TraesCS2A01G354300 chr2B 536619256 536621090 1834 True 1204.00 1949 89.8865 709 2672 2 chr2B.!!$R4 1963
5 TraesCS2A01G354300 chr2B 58887303 58887848 545 True 468.00 468 82.8070 1 548 1 chr2B.!!$R1 547
6 TraesCS2A01G354300 chr4A 18023892 18024549 657 False 573.00 573 82.7540 1 676 1 chr4A.!!$F1 675
7 TraesCS2A01G354300 chr4A 602102932 602103575 643 True 547.00 547 82.4220 14 676 1 chr4A.!!$R1 662
8 TraesCS2A01G354300 chr5A 579311966 579312622 656 False 571.00 571 82.7540 1 676 1 chr5A.!!$F1 675
9 TraesCS2A01G354300 chr7A 7302082 7302741 659 False 564.00 564 82.4640 1 676 1 chr7A.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.455295 GGTCTCTCAGTCGCAAGTCG 60.455 60.0 0.0 0.0 40.15 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1823 1.09805 GCAGCGATCCTGGATTGTTT 58.902 50.0 22.08 10.54 42.03 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.202855 CCTGCAGCCCAGTAAGCATAT 60.203 52.381 8.66 0.00 40.06 1.78
53 54 1.653094 AAGCGCTCGAGGTCTCTCAG 61.653 60.000 12.06 0.00 39.95 3.35
63 64 0.455295 GGTCTCTCAGTCGCAAGTCG 60.455 60.000 0.00 0.00 40.15 4.18
71 72 2.815211 TCGCAAGTCGCCATGCTC 60.815 61.111 0.00 0.00 40.39 4.26
80 81 2.894387 GCCATGCTCTCTCGCACC 60.894 66.667 0.00 0.00 43.61 5.01
86 87 4.504916 CTCTCTCGCACCCAGCCG 62.505 72.222 0.00 0.00 41.38 5.52
118 126 1.864862 CTGTTTCTCACGGCTGCAG 59.135 57.895 10.11 10.11 0.00 4.41
141 149 1.670949 GCAGGAGGCAGAGACATCGA 61.671 60.000 0.00 0.00 43.97 3.59
143 151 1.064946 GGAGGCAGAGACATCGACG 59.935 63.158 0.00 0.00 0.00 5.12
164 172 2.134789 ATCAAGCAACCACTCCATCC 57.865 50.000 0.00 0.00 0.00 3.51
172 180 3.434309 CAACCACTCCATCCAATTTCCT 58.566 45.455 0.00 0.00 0.00 3.36
186 194 7.397892 TCCAATTTCCTTGCAATTACGATTA 57.602 32.000 0.00 0.00 33.20 1.75
246 254 7.201444 CCAAATACTGAGTTCAACGATGTAGTC 60.201 40.741 0.00 0.00 0.00 2.59
248 256 5.196341 ACTGAGTTCAACGATGTAGTCAA 57.804 39.130 10.27 0.00 36.31 3.18
277 311 9.469097 ACATCATATAGTCCTGGTTAGATAGTC 57.531 37.037 0.00 0.00 0.00 2.59
280 314 8.891501 TCATATAGTCCTGGTTAGATAGTCTGA 58.108 37.037 0.00 0.00 0.00 3.27
306 340 2.133281 CACTCAATTGAGGGGCATGA 57.867 50.000 33.11 0.00 46.13 3.07
315 349 4.794311 TTGAGGGGCATGAATTAGATGA 57.206 40.909 0.00 0.00 0.00 2.92
404 438 8.602328 CACTCAATTGTTCTTTGCATTTTACAA 58.398 29.630 5.13 7.22 0.00 2.41
427 461 8.413229 ACAAATCACAACATATATTTGGTAGCC 58.587 33.333 10.38 0.00 41.46 3.93
428 462 8.412456 CAAATCACAACATATATTTGGTAGCCA 58.588 33.333 0.00 0.00 36.26 4.75
429 463 8.532186 AATCACAACATATATTTGGTAGCCAA 57.468 30.769 0.00 0.00 42.29 4.52
441 475 6.849085 TTTGGTAGCCAAATCACAACATAT 57.151 33.333 9.05 0.00 46.92 1.78
442 476 7.946381 TTTGGTAGCCAAATCACAACATATA 57.054 32.000 9.05 0.00 46.92 0.86
443 477 8.532186 TTTGGTAGCCAAATCACAACATATAT 57.468 30.769 9.05 0.00 46.92 0.86
444 478 8.532186 TTGGTAGCCAAATCACAACATATATT 57.468 30.769 0.00 0.00 40.92 1.28
578 621 5.485353 TCTCACTCCATCTTGTAATCCTGTT 59.515 40.000 0.00 0.00 0.00 3.16
582 625 7.606456 TCACTCCATCTTGTAATCCTGTTTTAC 59.394 37.037 0.00 0.00 0.00 2.01
639 689 5.405935 AAAAACAGTGCTCTTCCTTTGTT 57.594 34.783 0.00 0.00 0.00 2.83
670 720 4.202243 CCCAACATTTTCTTTGAAGCTCCA 60.202 41.667 0.00 0.00 0.00 3.86
696 746 3.998913 TGTTCACTTGCATCCCTATGA 57.001 42.857 0.00 0.00 34.84 2.15
697 747 4.508551 TGTTCACTTGCATCCCTATGAT 57.491 40.909 0.00 0.00 34.84 2.45
906 958 6.011628 CCCATACCCAATACCTTCCATCTTAT 60.012 42.308 0.00 0.00 0.00 1.73
1215 1268 2.134092 GGCGTGGGGCTACTTCTAT 58.866 57.895 0.00 0.00 42.94 1.98
1593 1652 3.507009 GACGAGGAGGACGACGGG 61.507 72.222 0.00 0.00 34.70 5.28
1674 1733 2.025719 CGCTCGACCTAGCTGATGA 58.974 57.895 0.00 0.00 40.49 2.92
1675 1734 0.595588 CGCTCGACCTAGCTGATGAT 59.404 55.000 0.00 0.00 40.49 2.45
1676 1735 1.665448 CGCTCGACCTAGCTGATGATG 60.665 57.143 0.00 0.00 40.49 3.07
1684 1743 1.106944 TAGCTGATGATGCCGACCGA 61.107 55.000 0.00 0.00 0.00 4.69
1709 1768 2.150719 ACGGGTGTGGGGATTGTGA 61.151 57.895 0.00 0.00 0.00 3.58
1758 1823 1.793581 GCGTTGCATCGGTCATGAA 59.206 52.632 18.16 0.00 33.80 2.57
1809 1874 4.935808 TCCTTCGGAGAGCTTTTGATTTAC 59.064 41.667 0.00 0.00 38.43 2.01
1810 1875 4.695455 CCTTCGGAGAGCTTTTGATTTACA 59.305 41.667 0.00 0.00 38.43 2.41
1811 1876 5.163814 CCTTCGGAGAGCTTTTGATTTACAG 60.164 44.000 0.00 0.00 38.43 2.74
1812 1877 4.894784 TCGGAGAGCTTTTGATTTACAGT 58.105 39.130 0.00 0.00 0.00 3.55
1813 1878 6.032956 TCGGAGAGCTTTTGATTTACAGTA 57.967 37.500 0.00 0.00 0.00 2.74
1814 1879 6.460781 TCGGAGAGCTTTTGATTTACAGTAA 58.539 36.000 0.00 0.00 0.00 2.24
1861 1926 2.482721 GTCATCACCAAACCCGTAGTTG 59.517 50.000 0.00 0.00 39.19 3.16
1879 1944 3.259625 AGTTGAGAGAAACTGGTAGAGCC 59.740 47.826 0.00 0.00 38.95 4.70
1907 1972 5.576447 TCTGAATCTGTACGTATCTTGCA 57.424 39.130 0.00 0.00 0.00 4.08
1917 1982 3.674997 ACGTATCTTGCATTGGTTCTGT 58.325 40.909 0.00 0.00 0.00 3.41
1944 2012 5.362556 TTTTGATCTGCTTGCTCTTGTAC 57.637 39.130 0.00 0.00 0.00 2.90
1948 2016 3.319137 TCTGCTTGCTCTTGTACGAAT 57.681 42.857 0.00 0.00 0.00 3.34
1950 2018 4.424626 TCTGCTTGCTCTTGTACGAATAG 58.575 43.478 0.00 0.00 0.00 1.73
1951 2019 4.082190 TCTGCTTGCTCTTGTACGAATAGT 60.082 41.667 0.00 0.00 0.00 2.12
1961 2029 7.165460 TCTTGTACGAATAGTTCAGGAATCA 57.835 36.000 0.00 0.00 34.35 2.57
1988 2056 1.202806 TCAGGGTTGCAGTTCTCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
2004 2072 3.338249 TCTTGGATGTTGAAGTAGCAGC 58.662 45.455 0.00 0.00 0.00 5.25
2016 2084 5.364778 TGAAGTAGCAGCTTGTTTGTAAGA 58.635 37.500 0.00 0.00 0.00 2.10
2022 2090 4.884164 AGCAGCTTGTTTGTAAGAGAGTTT 59.116 37.500 0.00 0.00 0.00 2.66
2059 2128 6.486253 TCTCATGTTGATGCAGAGTAAAAC 57.514 37.500 0.00 0.00 0.00 2.43
2105 2174 6.895756 TCTCTGCTAAGTAATCCTTCCTTGTA 59.104 38.462 0.00 0.00 34.46 2.41
2178 2247 3.256631 ACCTCATCATTTTCCTGCAACAC 59.743 43.478 0.00 0.00 0.00 3.32
2179 2248 3.256383 CCTCATCATTTTCCTGCAACACA 59.744 43.478 0.00 0.00 0.00 3.72
2180 2249 4.081862 CCTCATCATTTTCCTGCAACACAT 60.082 41.667 0.00 0.00 0.00 3.21
2181 2250 5.471556 TCATCATTTTCCTGCAACACATT 57.528 34.783 0.00 0.00 0.00 2.71
2182 2251 5.231702 TCATCATTTTCCTGCAACACATTG 58.768 37.500 0.00 0.00 38.99 2.82
2183 2252 3.992643 TCATTTTCCTGCAACACATTGG 58.007 40.909 0.00 0.00 36.23 3.16
2184 2253 3.387374 TCATTTTCCTGCAACACATTGGT 59.613 39.130 0.00 0.00 36.23 3.67
2185 2254 3.902881 TTTTCCTGCAACACATTGGTT 57.097 38.095 0.00 0.00 36.23 3.67
2194 2263 3.379240 CAACACATTGGTTGCGATTTCA 58.621 40.909 5.47 0.00 41.37 2.69
2195 2264 3.287312 ACACATTGGTTGCGATTTCAG 57.713 42.857 0.00 0.00 0.00 3.02
2196 2265 2.884012 ACACATTGGTTGCGATTTCAGA 59.116 40.909 0.00 0.00 0.00 3.27
2197 2266 3.317711 ACACATTGGTTGCGATTTCAGAA 59.682 39.130 0.00 0.00 0.00 3.02
2198 2267 4.202101 ACACATTGGTTGCGATTTCAGAAA 60.202 37.500 0.00 0.00 0.00 2.52
2199 2268 4.925054 CACATTGGTTGCGATTTCAGAAAT 59.075 37.500 8.20 8.20 0.00 2.17
2200 2269 5.406175 CACATTGGTTGCGATTTCAGAAATT 59.594 36.000 9.84 0.00 0.00 1.82
2201 2270 5.406175 ACATTGGTTGCGATTTCAGAAATTG 59.594 36.000 16.37 16.37 35.72 2.32
2212 2281 6.963049 ATTTCAGAAATTGCAGAAATCAGC 57.037 33.333 10.28 0.00 36.30 4.26
2213 2282 5.717078 TTCAGAAATTGCAGAAATCAGCT 57.283 34.783 0.00 0.00 0.00 4.24
2214 2283 6.822667 TTCAGAAATTGCAGAAATCAGCTA 57.177 33.333 0.00 0.00 0.00 3.32
2215 2284 6.187125 TCAGAAATTGCAGAAATCAGCTAC 57.813 37.500 0.00 0.00 0.00 3.58
2216 2285 5.942236 TCAGAAATTGCAGAAATCAGCTACT 59.058 36.000 0.00 0.00 0.00 2.57
2217 2286 6.093219 TCAGAAATTGCAGAAATCAGCTACTC 59.907 38.462 0.00 0.00 0.00 2.59
2218 2287 4.871993 AATTGCAGAAATCAGCTACTCG 57.128 40.909 0.00 0.00 0.00 4.18
2219 2288 3.319137 TTGCAGAAATCAGCTACTCGT 57.681 42.857 0.00 0.00 0.00 4.18
2220 2289 3.319137 TGCAGAAATCAGCTACTCGTT 57.681 42.857 0.00 0.00 0.00 3.85
2221 2290 2.995939 TGCAGAAATCAGCTACTCGTTG 59.004 45.455 0.00 0.00 0.00 4.10
2222 2291 2.349886 GCAGAAATCAGCTACTCGTTGG 59.650 50.000 0.00 0.00 0.00 3.77
2223 2292 3.849911 CAGAAATCAGCTACTCGTTGGA 58.150 45.455 0.00 0.00 0.00 3.53
2224 2293 4.245660 CAGAAATCAGCTACTCGTTGGAA 58.754 43.478 0.00 0.00 0.00 3.53
2225 2294 4.328440 CAGAAATCAGCTACTCGTTGGAAG 59.672 45.833 0.00 0.00 0.00 3.46
2226 2295 4.220821 AGAAATCAGCTACTCGTTGGAAGA 59.779 41.667 0.00 0.00 0.00 2.87
2227 2296 4.744795 AATCAGCTACTCGTTGGAAGAT 57.255 40.909 0.00 0.00 0.00 2.40
2228 2297 4.744795 ATCAGCTACTCGTTGGAAGATT 57.255 40.909 0.00 0.00 0.00 2.40
2229 2298 4.537135 TCAGCTACTCGTTGGAAGATTT 57.463 40.909 0.00 0.00 0.00 2.17
2230 2299 4.495422 TCAGCTACTCGTTGGAAGATTTC 58.505 43.478 0.00 0.00 0.00 2.17
2231 2300 4.220821 TCAGCTACTCGTTGGAAGATTTCT 59.779 41.667 0.00 0.00 0.00 2.52
2232 2301 4.932200 CAGCTACTCGTTGGAAGATTTCTT 59.068 41.667 0.00 0.00 39.23 2.52
2233 2302 5.409826 CAGCTACTCGTTGGAAGATTTCTTT 59.590 40.000 0.00 0.00 36.11 2.52
2234 2303 5.998363 AGCTACTCGTTGGAAGATTTCTTTT 59.002 36.000 0.00 0.00 36.11 2.27
2235 2304 6.147985 AGCTACTCGTTGGAAGATTTCTTTTC 59.852 38.462 0.00 0.00 36.11 2.29
2236 2305 5.690997 ACTCGTTGGAAGATTTCTTTTCC 57.309 39.130 0.00 0.00 42.56 3.13
2245 2314 8.115490 TGGAAGATTTCTTTTCCAGAATCTTC 57.885 34.615 20.92 20.92 45.87 2.87
2246 2315 7.946776 TGGAAGATTTCTTTTCCAGAATCTTCT 59.053 33.333 24.85 9.11 45.87 2.85
2247 2316 8.458052 GGAAGATTTCTTTTCCAGAATCTTCTC 58.542 37.037 24.85 16.66 44.20 2.87
2248 2317 7.608308 AGATTTCTTTTCCAGAATCTTCTCG 57.392 36.000 0.00 0.00 41.42 4.04
2249 2318 7.164803 AGATTTCTTTTCCAGAATCTTCTCGT 58.835 34.615 0.00 0.00 41.42 4.18
2250 2319 6.545504 TTTCTTTTCCAGAATCTTCTCGTG 57.454 37.500 0.00 0.00 41.42 4.35
2251 2320 5.468540 TCTTTTCCAGAATCTTCTCGTGA 57.531 39.130 0.00 0.00 34.74 4.35
2252 2321 5.473931 TCTTTTCCAGAATCTTCTCGTGAG 58.526 41.667 0.00 0.00 34.74 3.51
2253 2322 2.949451 TCCAGAATCTTCTCGTGAGC 57.051 50.000 0.00 0.00 34.74 4.26
2254 2323 2.171003 TCCAGAATCTTCTCGTGAGCA 58.829 47.619 0.00 0.00 34.74 4.26
2255 2324 2.762887 TCCAGAATCTTCTCGTGAGCAT 59.237 45.455 0.00 0.00 34.74 3.79
2256 2325 3.954258 TCCAGAATCTTCTCGTGAGCATA 59.046 43.478 0.00 0.00 34.74 3.14
2257 2326 4.586421 TCCAGAATCTTCTCGTGAGCATAT 59.414 41.667 0.00 0.00 34.74 1.78
2258 2327 4.685165 CCAGAATCTTCTCGTGAGCATATG 59.315 45.833 0.00 0.00 34.74 1.78
2259 2328 4.150274 CAGAATCTTCTCGTGAGCATATGC 59.850 45.833 20.36 20.36 36.99 3.14
2260 2329 3.740631 ATCTTCTCGTGAGCATATGCA 57.259 42.857 28.62 7.07 45.16 3.96
2261 2330 3.740631 TCTTCTCGTGAGCATATGCAT 57.259 42.857 28.62 14.19 45.16 3.96
2262 2331 4.853924 TCTTCTCGTGAGCATATGCATA 57.146 40.909 28.62 14.48 45.16 3.14
2263 2332 5.397142 TCTTCTCGTGAGCATATGCATAT 57.603 39.130 28.62 13.63 45.16 1.78
2264 2333 5.405797 TCTTCTCGTGAGCATATGCATATC 58.594 41.667 28.62 17.87 45.16 1.63
2265 2334 4.115401 TCTCGTGAGCATATGCATATCC 57.885 45.455 28.62 7.96 45.16 2.59
2266 2335 3.511146 TCTCGTGAGCATATGCATATCCA 59.489 43.478 28.62 14.74 45.16 3.41
2267 2336 4.021192 TCTCGTGAGCATATGCATATCCAA 60.021 41.667 28.62 7.26 45.16 3.53
2268 2337 4.835678 TCGTGAGCATATGCATATCCAAT 58.164 39.130 28.62 5.98 45.16 3.16
2269 2338 5.247862 TCGTGAGCATATGCATATCCAATT 58.752 37.500 28.62 5.21 45.16 2.32
2270 2339 5.122711 TCGTGAGCATATGCATATCCAATTG 59.877 40.000 28.62 7.27 45.16 2.32
2271 2340 5.100259 GTGAGCATATGCATATCCAATTGC 58.900 41.667 28.62 16.44 45.16 3.56
2280 2349 6.474140 TGCATATCCAATTGCAGAAATCTT 57.526 33.333 0.00 0.00 43.54 2.40
2281 2350 6.509656 TGCATATCCAATTGCAGAAATCTTC 58.490 36.000 0.00 0.00 43.54 2.87
2282 2351 6.322969 TGCATATCCAATTGCAGAAATCTTCT 59.677 34.615 0.00 0.00 43.54 2.85
2283 2352 6.862090 GCATATCCAATTGCAGAAATCTTCTC 59.138 38.462 0.00 0.00 38.11 2.87
2284 2353 7.469594 GCATATCCAATTGCAGAAATCTTCTCA 60.470 37.037 0.00 0.00 38.11 3.27
2285 2354 8.577296 CATATCCAATTGCAGAAATCTTCTCAT 58.423 33.333 0.00 0.00 38.11 2.90
2286 2355 6.446781 TCCAATTGCAGAAATCTTCTCATC 57.553 37.500 0.00 0.00 38.11 2.92
2287 2356 5.947566 TCCAATTGCAGAAATCTTCTCATCA 59.052 36.000 0.00 0.00 38.11 3.07
2307 2376 5.125100 TCAATCCACTGCAACAATCTTTC 57.875 39.130 0.00 0.00 0.00 2.62
2357 2426 4.584874 TCGTTGGAATGAAGCATTAAGGA 58.415 39.130 0.00 0.00 33.90 3.36
2358 2427 4.635765 TCGTTGGAATGAAGCATTAAGGAG 59.364 41.667 0.00 0.00 33.90 3.69
2359 2428 4.396166 CGTTGGAATGAAGCATTAAGGAGT 59.604 41.667 0.00 0.00 33.90 3.85
2360 2429 5.584649 CGTTGGAATGAAGCATTAAGGAGTA 59.415 40.000 0.00 0.00 33.90 2.59
2424 2497 6.721571 TCAGCTACTCAAATAACTTTTCCG 57.278 37.500 0.00 0.00 0.00 4.30
2425 2498 6.460781 TCAGCTACTCAAATAACTTTTCCGA 58.539 36.000 0.00 0.00 0.00 4.55
2426 2499 6.932400 TCAGCTACTCAAATAACTTTTCCGAA 59.068 34.615 0.00 0.00 0.00 4.30
2427 2500 7.606456 TCAGCTACTCAAATAACTTTTCCGAAT 59.394 33.333 0.00 0.00 0.00 3.34
2428 2501 7.693951 CAGCTACTCAAATAACTTTTCCGAATG 59.306 37.037 0.00 0.00 0.00 2.67
2429 2502 6.469275 GCTACTCAAATAACTTTTCCGAATGC 59.531 38.462 0.00 0.00 0.00 3.56
2430 2503 6.325919 ACTCAAATAACTTTTCCGAATGCA 57.674 33.333 0.00 0.00 0.00 3.96
2431 2504 6.924111 ACTCAAATAACTTTTCCGAATGCAT 58.076 32.000 0.00 0.00 0.00 3.96
2432 2505 7.029563 ACTCAAATAACTTTTCCGAATGCATC 58.970 34.615 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.871592 CGAGCGCTTTGGATCGATCA 60.872 55.000 25.93 10.23 40.64 2.92
118 126 3.397439 TCTCTGCCTCCTGCCTGC 61.397 66.667 0.00 0.00 40.16 4.85
141 149 1.202758 TGGAGTGGTTGCTTGATTCGT 60.203 47.619 0.00 0.00 0.00 3.85
143 151 2.424956 GGATGGAGTGGTTGCTTGATTC 59.575 50.000 0.00 0.00 0.00 2.52
164 172 7.275341 TGCTTAATCGTAATTGCAAGGAAATTG 59.725 33.333 4.94 0.00 42.20 2.32
172 180 6.735678 TCTCTTGCTTAATCGTAATTGCAA 57.264 33.333 0.00 0.00 34.47 4.08
186 194 5.356291 AGATTAGCTGTGATCTCTTGCTT 57.644 39.130 16.46 4.93 35.47 3.91
226 234 4.848562 TGACTACATCGTTGAACTCAGT 57.151 40.909 0.00 0.00 0.00 3.41
266 300 6.879400 AGTGGAACAATCAGACTATCTAACC 58.121 40.000 0.00 0.00 44.16 2.85
280 314 3.434309 CCCCTCAATTGAGTGGAACAAT 58.566 45.455 27.52 0.00 41.47 2.71
404 438 8.532186 TTGGCTACCAAATATATGTTGTGATT 57.468 30.769 0.00 0.00 40.92 2.57
420 454 8.412456 CAAATATATGTTGTGATTTGGCTACCA 58.588 33.333 0.00 0.00 36.22 3.25
421 455 7.867403 CCAAATATATGTTGTGATTTGGCTACC 59.133 37.037 11.19 0.00 46.74 3.18
422 456 8.801715 CCAAATATATGTTGTGATTTGGCTAC 57.198 34.615 11.19 0.00 46.74 3.58
427 461 8.412456 TGGCTACCAAATATATGTTGTGATTTG 58.588 33.333 0.00 0.00 38.46 2.32
428 462 8.532186 TGGCTACCAAATATATGTTGTGATTT 57.468 30.769 0.00 0.00 0.00 2.17
429 463 8.710749 ATGGCTACCAAATATATGTTGTGATT 57.289 30.769 0.00 0.00 36.95 2.57
430 464 9.806448 TTATGGCTACCAAATATATGTTGTGAT 57.194 29.630 0.00 0.00 36.95 3.06
431 465 9.283768 CTTATGGCTACCAAATATATGTTGTGA 57.716 33.333 0.00 0.00 36.95 3.58
432 466 8.023128 GCTTATGGCTACCAAATATATGTTGTG 58.977 37.037 0.00 0.00 36.95 3.33
433 467 7.723616 TGCTTATGGCTACCAAATATATGTTGT 59.276 33.333 0.00 0.00 42.39 3.32
434 468 8.109705 TGCTTATGGCTACCAAATATATGTTG 57.890 34.615 0.00 0.00 42.39 3.33
435 469 8.704849 TTGCTTATGGCTACCAAATATATGTT 57.295 30.769 0.00 0.00 42.39 2.71
436 470 8.742777 CATTGCTTATGGCTACCAAATATATGT 58.257 33.333 0.00 0.00 42.39 2.29
567 610 9.653287 CTCATTAGTCTGTAAAACAGGATTACA 57.347 33.333 7.18 0.00 45.94 2.41
568 611 9.654663 ACTCATTAGTCTGTAAAACAGGATTAC 57.345 33.333 7.18 0.00 45.94 1.89
571 614 9.823647 CATACTCATTAGTCTGTAAAACAGGAT 57.176 33.333 7.18 0.00 45.94 3.24
572 615 9.031537 TCATACTCATTAGTCTGTAAAACAGGA 57.968 33.333 7.18 0.00 45.94 3.86
621 671 2.689983 CCAAACAAAGGAAGAGCACTGT 59.310 45.455 0.00 0.00 0.00 3.55
623 673 1.683385 GCCAAACAAAGGAAGAGCACT 59.317 47.619 0.00 0.00 0.00 4.40
639 689 2.105806 GAAAATGTTGGGCGGGCCAA 62.106 55.000 29.82 29.82 37.98 4.52
670 720 1.956477 GGATGCAAGTGAACAAGTGGT 59.044 47.619 0.00 0.00 0.00 4.16
696 746 3.844211 TGGTTCTTGCTAGGAGGTTACAT 59.156 43.478 0.00 0.00 0.00 2.29
697 747 3.007614 GTGGTTCTTGCTAGGAGGTTACA 59.992 47.826 0.00 0.00 0.00 2.41
698 748 3.007614 TGTGGTTCTTGCTAGGAGGTTAC 59.992 47.826 0.00 0.00 0.00 2.50
699 749 3.244582 TGTGGTTCTTGCTAGGAGGTTA 58.755 45.455 0.00 0.00 0.00 2.85
700 750 2.054799 TGTGGTTCTTGCTAGGAGGTT 58.945 47.619 0.00 0.00 0.00 3.50
701 751 1.729586 TGTGGTTCTTGCTAGGAGGT 58.270 50.000 0.00 0.00 0.00 3.85
702 752 3.356529 AATGTGGTTCTTGCTAGGAGG 57.643 47.619 0.00 0.00 0.00 4.30
704 754 4.640201 GCATAAATGTGGTTCTTGCTAGGA 59.360 41.667 0.00 0.00 0.00 2.94
705 755 4.398988 TGCATAAATGTGGTTCTTGCTAGG 59.601 41.667 0.00 0.00 32.07 3.02
706 756 5.565592 TGCATAAATGTGGTTCTTGCTAG 57.434 39.130 0.00 0.00 32.07 3.42
707 757 5.418524 ACATGCATAAATGTGGTTCTTGCTA 59.581 36.000 0.00 0.00 39.32 3.49
840 892 5.952526 TTTTCTGTCCTTAACGGGATTTC 57.047 39.130 0.00 0.00 37.73 2.17
906 958 0.044244 CTTTGGAGGGGAGAGGGGTA 59.956 60.000 0.00 0.00 0.00 3.69
1593 1652 1.153881 GTCCTCTTCGCCGTACCAC 60.154 63.158 0.00 0.00 0.00 4.16
1745 1810 3.119531 TGGATTGTTTTCATGACCGATGC 60.120 43.478 0.00 0.00 31.32 3.91
1758 1823 1.098050 GCAGCGATCCTGGATTGTTT 58.902 50.000 22.08 10.54 42.03 2.83
1809 1874 5.305585 ACAGAAACCCATGTACTGTTACTG 58.694 41.667 0.00 0.00 38.31 2.74
1810 1875 5.562298 ACAGAAACCCATGTACTGTTACT 57.438 39.130 0.00 0.00 38.31 2.24
1811 1876 6.461640 ACTACAGAAACCCATGTACTGTTAC 58.538 40.000 0.00 0.00 40.33 2.50
1812 1877 6.675413 ACTACAGAAACCCATGTACTGTTA 57.325 37.500 0.00 0.00 40.33 2.41
1813 1878 5.562298 ACTACAGAAACCCATGTACTGTT 57.438 39.130 0.00 0.00 40.33 3.16
1814 1879 5.305585 CAACTACAGAAACCCATGTACTGT 58.694 41.667 0.00 0.00 41.60 3.55
1861 1926 2.093106 TCGGCTCTACCAGTTTCTCTC 58.907 52.381 0.00 0.00 39.03 3.20
1879 1944 6.893759 AGATACGTACAGATTCAGATTCTCG 58.106 40.000 0.00 0.00 0.00 4.04
1907 1972 7.039504 AGCAGATCAAAATGTTACAGAACCAAT 60.040 33.333 0.00 0.00 34.38 3.16
1917 1982 6.016024 ACAAGAGCAAGCAGATCAAAATGTTA 60.016 34.615 0.00 0.00 34.30 2.41
1944 2012 7.386025 TGAAGCATATGATTCCTGAACTATTCG 59.614 37.037 26.36 0.00 39.51 3.34
1948 2016 6.464892 CCCTGAAGCATATGATTCCTGAACTA 60.465 42.308 26.36 8.89 39.51 2.24
1950 2018 4.518211 CCCTGAAGCATATGATTCCTGAAC 59.482 45.833 26.36 6.13 39.51 3.18
1951 2019 4.166725 ACCCTGAAGCATATGATTCCTGAA 59.833 41.667 26.36 10.49 39.51 3.02
1961 2029 2.814805 ACTGCAACCCTGAAGCATAT 57.185 45.000 0.00 0.00 37.68 1.78
1988 2056 4.756084 AACAAGCTGCTACTTCAACATC 57.244 40.909 0.90 0.00 0.00 3.06
2059 2128 1.214305 TTGATTGGGGACAGAGGGGG 61.214 60.000 0.00 0.00 44.54 5.40
2105 2174 4.242475 CAGCATCACATTTCTGCAATTGT 58.758 39.130 7.40 0.00 38.37 2.71
2178 2247 5.669357 GCAATTTCTGAAATCGCAACCAATG 60.669 40.000 18.46 10.14 31.24 2.82
2179 2248 4.389687 GCAATTTCTGAAATCGCAACCAAT 59.610 37.500 18.46 0.00 31.24 3.16
2180 2249 3.740321 GCAATTTCTGAAATCGCAACCAA 59.260 39.130 18.46 0.00 31.24 3.67
2181 2250 3.243670 TGCAATTTCTGAAATCGCAACCA 60.244 39.130 22.49 3.47 37.82 3.67
2182 2251 3.316283 TGCAATTTCTGAAATCGCAACC 58.684 40.909 22.49 6.88 37.82 3.77
2183 2252 4.229096 TCTGCAATTTCTGAAATCGCAAC 58.771 39.130 24.10 10.46 40.01 4.17
2184 2253 4.502171 TCTGCAATTTCTGAAATCGCAA 57.498 36.364 24.10 14.87 40.01 4.85
2185 2254 4.502171 TTCTGCAATTTCTGAAATCGCA 57.498 36.364 23.01 23.01 38.39 5.10
2186 2255 6.017580 GATTTCTGCAATTTCTGAAATCGC 57.982 37.500 23.72 16.96 44.05 4.58
2189 2258 6.698380 AGCTGATTTCTGCAATTTCTGAAAT 58.302 32.000 18.05 18.05 42.97 2.17
2191 2260 5.717078 AGCTGATTTCTGCAATTTCTGAA 57.283 34.783 11.32 0.00 42.33 3.02
2192 2261 5.942236 AGTAGCTGATTTCTGCAATTTCTGA 59.058 36.000 11.32 0.00 42.33 3.27
2193 2262 6.192234 AGTAGCTGATTTCTGCAATTTCTG 57.808 37.500 11.32 0.00 42.33 3.02
2194 2263 5.064452 CGAGTAGCTGATTTCTGCAATTTCT 59.936 40.000 11.32 3.13 42.33 2.52
2195 2264 5.163814 ACGAGTAGCTGATTTCTGCAATTTC 60.164 40.000 11.32 3.76 42.33 2.17
2196 2265 4.697352 ACGAGTAGCTGATTTCTGCAATTT 59.303 37.500 11.32 0.00 42.33 1.82
2197 2266 4.256920 ACGAGTAGCTGATTTCTGCAATT 58.743 39.130 11.32 0.00 42.33 2.32
2198 2267 3.866651 ACGAGTAGCTGATTTCTGCAAT 58.133 40.909 11.32 0.00 42.33 3.56
2199 2268 3.319137 ACGAGTAGCTGATTTCTGCAA 57.681 42.857 11.32 0.00 42.33 4.08
2200 2269 2.995939 CAACGAGTAGCTGATTTCTGCA 59.004 45.455 11.32 0.00 42.33 4.41
2201 2270 2.349886 CCAACGAGTAGCTGATTTCTGC 59.650 50.000 0.00 1.57 40.53 4.26
2202 2271 3.849911 TCCAACGAGTAGCTGATTTCTG 58.150 45.455 0.00 0.00 0.00 3.02
2203 2272 4.220821 TCTTCCAACGAGTAGCTGATTTCT 59.779 41.667 0.00 0.00 0.00 2.52
2204 2273 4.495422 TCTTCCAACGAGTAGCTGATTTC 58.505 43.478 0.00 0.00 0.00 2.17
2205 2274 4.537135 TCTTCCAACGAGTAGCTGATTT 57.463 40.909 0.00 0.00 0.00 2.17
2206 2275 4.744795 ATCTTCCAACGAGTAGCTGATT 57.255 40.909 0.00 0.00 0.00 2.57
2207 2276 4.744795 AATCTTCCAACGAGTAGCTGAT 57.255 40.909 0.00 0.00 0.00 2.90
2208 2277 4.220821 AGAAATCTTCCAACGAGTAGCTGA 59.779 41.667 0.00 0.00 0.00 4.26
2209 2278 4.499183 AGAAATCTTCCAACGAGTAGCTG 58.501 43.478 0.00 0.00 0.00 4.24
2210 2279 4.810191 AGAAATCTTCCAACGAGTAGCT 57.190 40.909 0.00 0.00 0.00 3.32
2211 2280 5.864628 AAAGAAATCTTCCAACGAGTAGC 57.135 39.130 0.00 0.00 34.61 3.58
2212 2281 6.426937 TGGAAAAGAAATCTTCCAACGAGTAG 59.573 38.462 1.07 0.00 46.35 2.57
2213 2282 6.292923 TGGAAAAGAAATCTTCCAACGAGTA 58.707 36.000 1.07 0.00 46.35 2.59
2214 2283 5.130350 TGGAAAAGAAATCTTCCAACGAGT 58.870 37.500 1.07 0.00 46.35 4.18
2215 2284 5.689383 TGGAAAAGAAATCTTCCAACGAG 57.311 39.130 1.07 0.00 46.35 4.18
2229 2298 5.468540 TCACGAGAAGATTCTGGAAAAGA 57.531 39.130 11.01 2.10 37.73 2.52
2230 2299 4.092675 GCTCACGAGAAGATTCTGGAAAAG 59.907 45.833 11.01 6.48 37.73 2.27
2231 2300 3.997021 GCTCACGAGAAGATTCTGGAAAA 59.003 43.478 11.01 0.00 37.73 2.29
2232 2301 3.006859 TGCTCACGAGAAGATTCTGGAAA 59.993 43.478 11.01 0.00 37.73 3.13
2233 2302 2.562738 TGCTCACGAGAAGATTCTGGAA 59.437 45.455 11.01 0.00 37.73 3.53
2234 2303 2.171003 TGCTCACGAGAAGATTCTGGA 58.829 47.619 11.01 1.07 37.73 3.86
2235 2304 2.662006 TGCTCACGAGAAGATTCTGG 57.338 50.000 0.00 1.26 37.73 3.86
2236 2305 4.150274 GCATATGCTCACGAGAAGATTCTG 59.850 45.833 20.64 0.00 36.41 3.02
2237 2306 4.202192 TGCATATGCTCACGAGAAGATTCT 60.202 41.667 27.13 0.00 42.66 2.40
2238 2307 4.053983 TGCATATGCTCACGAGAAGATTC 58.946 43.478 27.13 0.00 42.66 2.52
2239 2308 4.063998 TGCATATGCTCACGAGAAGATT 57.936 40.909 27.13 0.00 42.66 2.40
2240 2309 3.740631 TGCATATGCTCACGAGAAGAT 57.259 42.857 27.13 0.00 42.66 2.40
2241 2310 3.740631 ATGCATATGCTCACGAGAAGA 57.259 42.857 27.13 4.41 42.66 2.87
2242 2311 4.565962 GGATATGCATATGCTCACGAGAAG 59.434 45.833 25.92 0.00 42.66 2.85
2243 2312 4.021192 TGGATATGCATATGCTCACGAGAA 60.021 41.667 30.68 11.82 42.66 2.87
2244 2313 3.511146 TGGATATGCATATGCTCACGAGA 59.489 43.478 30.68 12.45 42.66 4.04
2245 2314 3.853475 TGGATATGCATATGCTCACGAG 58.147 45.455 30.68 0.00 42.66 4.18
2246 2315 3.959535 TGGATATGCATATGCTCACGA 57.040 42.857 30.68 13.69 42.66 4.35
2247 2316 5.329493 CAATTGGATATGCATATGCTCACG 58.671 41.667 30.68 17.32 42.66 4.35
2248 2317 5.100259 GCAATTGGATATGCATATGCTCAC 58.900 41.667 30.68 14.64 42.12 3.51
2249 2318 4.767928 TGCAATTGGATATGCATATGCTCA 59.232 37.500 30.68 20.93 46.87 4.26
2250 2319 5.319140 TGCAATTGGATATGCATATGCTC 57.681 39.130 30.68 16.66 46.87 4.26
2258 2327 6.746120 AGAAGATTTCTGCAATTGGATATGC 58.254 36.000 7.72 0.00 42.86 3.14
2259 2328 7.937649 TGAGAAGATTTCTGCAATTGGATATG 58.062 34.615 7.72 0.00 40.87 1.78
2260 2329 8.707796 ATGAGAAGATTTCTGCAATTGGATAT 57.292 30.769 7.72 0.00 40.87 1.63
2261 2330 7.776500 TGATGAGAAGATTTCTGCAATTGGATA 59.224 33.333 7.72 0.00 40.87 2.59
2262 2331 6.605995 TGATGAGAAGATTTCTGCAATTGGAT 59.394 34.615 7.72 0.00 40.87 3.41
2263 2332 5.947566 TGATGAGAAGATTTCTGCAATTGGA 59.052 36.000 7.72 2.96 40.87 3.53
2264 2333 6.203808 TGATGAGAAGATTTCTGCAATTGG 57.796 37.500 7.72 0.00 40.87 3.16
2265 2334 7.435488 GGATTGATGAGAAGATTTCTGCAATTG 59.565 37.037 0.00 0.00 40.87 2.32
2266 2335 7.123697 TGGATTGATGAGAAGATTTCTGCAATT 59.876 33.333 0.00 0.00 40.87 2.32
2267 2336 6.605995 TGGATTGATGAGAAGATTTCTGCAAT 59.394 34.615 0.00 4.11 40.87 3.56
2268 2337 5.947566 TGGATTGATGAGAAGATTTCTGCAA 59.052 36.000 0.00 0.00 40.87 4.08
2269 2338 5.356190 GTGGATTGATGAGAAGATTTCTGCA 59.644 40.000 0.00 0.00 40.87 4.41
2270 2339 5.589452 AGTGGATTGATGAGAAGATTTCTGC 59.411 40.000 0.00 0.00 40.87 4.26
2271 2340 6.458478 GCAGTGGATTGATGAGAAGATTTCTG 60.458 42.308 0.00 0.00 40.87 3.02
2272 2341 5.589452 GCAGTGGATTGATGAGAAGATTTCT 59.411 40.000 0.00 0.00 44.21 2.52
2273 2342 5.356190 TGCAGTGGATTGATGAGAAGATTTC 59.644 40.000 0.00 0.00 0.00 2.17
2274 2343 5.258841 TGCAGTGGATTGATGAGAAGATTT 58.741 37.500 0.00 0.00 0.00 2.17
2275 2344 4.851843 TGCAGTGGATTGATGAGAAGATT 58.148 39.130 0.00 0.00 0.00 2.40
2276 2345 4.498894 TGCAGTGGATTGATGAGAAGAT 57.501 40.909 0.00 0.00 0.00 2.40
2277 2346 3.986996 TGCAGTGGATTGATGAGAAGA 57.013 42.857 0.00 0.00 0.00 2.87
2278 2347 3.754850 TGTTGCAGTGGATTGATGAGAAG 59.245 43.478 0.00 0.00 0.00 2.85
2279 2348 3.753815 TGTTGCAGTGGATTGATGAGAA 58.246 40.909 0.00 0.00 0.00 2.87
2280 2349 3.421919 TGTTGCAGTGGATTGATGAGA 57.578 42.857 0.00 0.00 0.00 3.27
2281 2350 4.398358 AGATTGTTGCAGTGGATTGATGAG 59.602 41.667 0.00 0.00 0.00 2.90
2282 2351 4.338012 AGATTGTTGCAGTGGATTGATGA 58.662 39.130 0.00 0.00 0.00 2.92
2283 2352 4.713824 AGATTGTTGCAGTGGATTGATG 57.286 40.909 0.00 0.00 0.00 3.07
2284 2353 5.620654 CGAAAGATTGTTGCAGTGGATTGAT 60.621 40.000 0.00 0.00 0.00 2.57
2285 2354 4.320421 CGAAAGATTGTTGCAGTGGATTGA 60.320 41.667 0.00 0.00 0.00 2.57
2286 2355 3.916172 CGAAAGATTGTTGCAGTGGATTG 59.084 43.478 0.00 0.00 0.00 2.67
2287 2356 3.057315 CCGAAAGATTGTTGCAGTGGATT 60.057 43.478 0.00 0.00 0.00 3.01
2307 2376 2.225491 TCTGGAAAAGAAATCGCAACCG 59.775 45.455 0.00 0.00 29.54 4.44
2360 2429 9.331282 GAGTGTATTAATTCCTTGCTGATACTT 57.669 33.333 0.00 0.00 0.00 2.24
2424 2497 3.366070 GCATATGCTCACTGGATGCATTC 60.366 47.826 20.64 0.00 43.85 2.67
2425 2498 2.557056 GCATATGCTCACTGGATGCATT 59.443 45.455 20.64 0.00 43.85 3.56
2426 2499 2.488347 TGCATATGCTCACTGGATGCAT 60.488 45.455 27.13 0.00 45.86 3.96
2427 2500 1.601166 GCATATGCTCACTGGATGCA 58.399 50.000 20.64 0.00 41.98 3.96
2428 2501 1.601166 TGCATATGCTCACTGGATGC 58.399 50.000 27.13 0.17 42.57 3.91
2429 2502 4.575236 GGATATGCATATGCTCACTGGATG 59.425 45.833 25.92 0.00 42.66 3.51
2430 2503 4.226620 TGGATATGCATATGCTCACTGGAT 59.773 41.667 30.68 13.43 42.66 3.41
2431 2504 3.583966 TGGATATGCATATGCTCACTGGA 59.416 43.478 30.68 12.45 42.66 3.86
2432 2505 3.946606 TGGATATGCATATGCTCACTGG 58.053 45.455 30.68 0.00 42.66 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.