Multiple sequence alignment - TraesCS2A01G354200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G354200 chr2A 100.000 3005 0 0 1 3005 595217595 595220599 0.000000e+00 5550.0
1 TraesCS2A01G354200 chr2B 91.051 2503 171 23 1 2491 536641260 536638799 0.000000e+00 3332.0
2 TraesCS2A01G354200 chr2B 93.404 379 18 4 2627 3005 536638535 536638164 3.380000e-154 555.0
3 TraesCS2A01G354200 chr2B 85.294 204 26 4 1185 1387 19106832 19107032 1.090000e-49 207.0
4 TraesCS2A01G354200 chr2B 100.000 37 0 0 2544 2580 536638591 536638555 5.380000e-08 69.4
5 TraesCS2A01G354200 chr2D 92.773 1785 107 9 712 2491 455525158 455523391 0.000000e+00 2562.0
6 TraesCS2A01G354200 chr2D 93.520 679 37 4 2 680 455525830 455525159 0.000000e+00 1003.0
7 TraesCS2A01G354200 chr2D 93.686 491 24 1 2515 3005 455523310 455522827 0.000000e+00 728.0
8 TraesCS2A01G354200 chr2D 92.857 70 5 0 2063 2132 455523435 455523366 5.300000e-18 102.0
9 TraesCS2A01G354200 chr4B 94.444 36 2 0 1692 1727 634368905 634368940 4.180000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G354200 chr2A 595217595 595220599 3004 False 5550.00 5550 100.000000 1 3005 1 chr2A.!!$F1 3004
1 TraesCS2A01G354200 chr2B 536638164 536641260 3096 True 1318.80 3332 94.818333 1 3005 3 chr2B.!!$R1 3004
2 TraesCS2A01G354200 chr2D 455522827 455525830 3003 True 1098.75 2562 93.209000 2 3005 4 chr2D.!!$R1 3003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
647 654 0.316442 GCGCGTGATGATCATGGTTG 60.316 55.0 14.3 1.24 34.08 3.77 F
1757 1768 0.756294 TCGACCTGAAGGCAGACAAA 59.244 50.0 0.0 0.00 45.17 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 1771 0.036732 TCACGGCAGCCTTGATCTTT 59.963 50.0 16.61 0.0 26.56 2.52 R
2741 2945 0.455464 CTTCCGTCACATGCGTCGTA 60.455 55.0 0.00 0.0 0.00 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.612066 AAAAACTGAGAAAATATTTTTGGCAGA 57.388 25.926 27.26 9.16 32.67 4.26
32 33 8.593492 AACTGAGAAAATATTTTTGGCAGAAC 57.407 30.769 27.26 11.94 32.39 3.01
54 55 3.231298 GGTATTGCCGGAGAGCCT 58.769 61.111 5.05 0.00 0.00 4.58
83 84 6.897138 TGAATTTTCGCTTTAAAAACGCAAAG 59.103 30.769 11.55 0.00 35.33 2.77
188 191 2.645567 CCTCGCGGCGATCTGTAT 59.354 61.111 26.60 0.00 34.61 2.29
407 414 1.938657 CTCCGCTCTTCTTCGCCTCA 61.939 60.000 0.00 0.00 0.00 3.86
519 526 1.007154 TCCGCGTCGTTGTTCATGA 60.007 52.632 4.92 0.00 0.00 3.07
573 580 4.963428 GCCCGTCCTATTCCGCGG 62.963 72.222 22.12 22.12 43.40 6.46
577 584 1.450531 CCGTCCTATTCCGCGGTAGT 61.451 60.000 27.15 14.64 39.41 2.73
609 616 4.497674 CCGTTAGTAGTCCAGATGTGTAGC 60.498 50.000 0.00 0.00 0.00 3.58
633 640 2.798680 TGTTTATGTTTTGTTGCGCGT 58.201 38.095 8.43 0.00 0.00 6.01
647 654 0.316442 GCGCGTGATGATCATGGTTG 60.316 55.000 14.30 1.24 34.08 3.77
650 657 2.560504 GCGTGATGATCATGGTTGGTA 58.439 47.619 14.30 0.00 34.08 3.25
662 669 1.092348 GGTTGGTAGATTTGGGCGTC 58.908 55.000 0.00 0.00 0.00 5.19
683 690 4.627035 GTCAAATTAGATGCTTGTTTGGGC 59.373 41.667 0.00 0.00 32.26 5.36
693 700 1.686052 CTTGTTTGGGCTTGTGGCTTA 59.314 47.619 0.00 0.00 41.46 3.09
694 701 2.008242 TGTTTGGGCTTGTGGCTTAT 57.992 45.000 0.00 0.00 41.46 1.73
719 726 4.142816 CCTGTTTCCAGTTCATGACGAATC 60.143 45.833 0.00 0.00 36.95 2.52
732 739 4.761235 TGACGAATCGAGTTAGTGTTCT 57.239 40.909 10.55 0.00 0.00 3.01
795 803 1.668419 ATACTGTGCTCGGGAAATGC 58.332 50.000 0.00 0.00 0.00 3.56
854 862 1.658095 GCTCTGAGTTGCTTTAGCTCG 59.342 52.381 6.53 0.00 39.29 5.03
859 867 3.472652 TGAGTTGCTTTAGCTCGGAAAA 58.527 40.909 3.10 0.00 39.29 2.29
888 896 3.279434 AGTTTCCTCTTCCAACACACAC 58.721 45.455 0.00 0.00 0.00 3.82
909 919 5.242393 ACACAGCTTGCTTTTCTAATGTCAT 59.758 36.000 0.00 0.00 0.00 3.06
952 963 8.359409 GTTTCTCGTTATATCGATCTGAAATCG 58.641 37.037 15.97 1.13 42.38 3.34
973 984 1.082496 GCTCGTCTGTGTTTGCAGC 60.082 57.895 0.00 0.00 36.49 5.25
1022 1033 1.074889 GGCTCCCAAAGGTAACCTCAA 59.925 52.381 0.00 0.00 30.89 3.02
1044 1055 2.566833 TGTTGCAGAACTATGTGCCT 57.433 45.000 0.00 0.00 44.84 4.75
1099 1110 6.716628 AGACATTTCAGGTGCTTTAGATTTGA 59.283 34.615 0.00 0.00 0.00 2.69
1131 1142 7.913297 TGTGTAGTTCAAAGTTTGCTTTACATC 59.087 33.333 19.43 15.49 42.54 3.06
1172 1183 6.244654 TCACTATTGGATTGGTCAACATGAA 58.755 36.000 0.00 0.00 0.00 2.57
1177 1188 5.648178 TGGATTGGTCAACATGAATGAAG 57.352 39.130 0.00 0.00 0.00 3.02
1223 1234 7.816995 TGCTCTTGTAAAATGTTTGTTCTTTGT 59.183 29.630 0.00 0.00 0.00 2.83
1301 1312 3.879295 GCTCCAATAGTATGCTCTGCAAA 59.121 43.478 0.00 0.00 43.62 3.68
1372 1383 3.844577 ACTCATGCTTGACTGAATTGC 57.155 42.857 0.00 0.00 0.00 3.56
1380 1391 3.448660 GCTTGACTGAATTGCCCCTTTAT 59.551 43.478 0.00 0.00 0.00 1.40
1381 1392 4.678840 GCTTGACTGAATTGCCCCTTTATG 60.679 45.833 0.00 0.00 0.00 1.90
1402 1413 5.528043 TGATCCAGAAGCTTACTCTCATC 57.472 43.478 0.00 0.00 0.00 2.92
1403 1414 5.207354 TGATCCAGAAGCTTACTCTCATCT 58.793 41.667 0.00 0.00 0.00 2.90
1412 1423 5.904941 AGCTTACTCTCATCTGTCATTCTG 58.095 41.667 0.00 0.00 0.00 3.02
1426 1437 2.931969 TCATTCTGTATGTCTTGCTGCG 59.068 45.455 0.00 0.00 35.64 5.18
1529 1540 0.823356 TTGCCAAGGCTGTGAAGTCC 60.823 55.000 12.96 0.00 42.51 3.85
1565 1576 1.059369 CGCAAAGAAGATCCGCACG 59.941 57.895 0.00 0.00 0.00 5.34
1640 1651 3.415087 AGGATCAGCACCCCTGGC 61.415 66.667 0.00 0.00 42.05 4.85
1667 1678 6.154021 GGAACAAGTTAGACCAGTACCAGATA 59.846 42.308 0.00 0.00 0.00 1.98
1751 1762 1.215382 CATCGTCGACCTGAAGGCA 59.785 57.895 10.58 0.00 39.32 4.75
1757 1768 0.756294 TCGACCTGAAGGCAGACAAA 59.244 50.000 0.00 0.00 45.17 2.83
1778 1789 0.883833 AAAAGATCAAGGCTGCCGTG 59.116 50.000 25.81 25.81 34.41 4.94
1781 1792 0.036732 AGATCAAGGCTGCCGTGAAA 59.963 50.000 34.56 18.13 44.27 2.69
1784 1795 0.667993 TCAAGGCTGCCGTGAAAAAG 59.332 50.000 30.53 7.84 38.92 2.27
1820 1831 1.886542 GCCAAGAAGGTTAACACCCTG 59.113 52.381 8.10 0.00 45.63 4.45
1874 1885 0.251033 TGTGCTGCTTGCTTGATCCT 60.251 50.000 0.00 0.00 43.37 3.24
1891 1902 1.950216 TCCTCTATGACGTGCAGCTAG 59.050 52.381 0.00 0.00 0.00 3.42
1965 1976 2.094494 CGTGAAGCTGACACCAGACTAT 60.094 50.000 15.48 0.00 43.02 2.12
2061 2072 6.370442 TGTCGTGGTTTCTTATGTTATTGGAG 59.630 38.462 0.00 0.00 0.00 3.86
2121 2132 2.809601 GCCTACCATATCGCCGCG 60.810 66.667 6.39 6.39 0.00 6.46
2194 2205 1.662026 GCTTTGCGTTTGGTCTTACCG 60.662 52.381 0.00 0.00 42.58 4.02
2230 2241 5.021458 TCTTTACCATCCTTCGACTTACCT 58.979 41.667 0.00 0.00 0.00 3.08
2279 2291 3.160545 CTCGTGTGTGTTTGTGTTGAAC 58.839 45.455 0.00 0.00 0.00 3.18
2307 2319 0.391661 GCTTTGGGCGATGAGACAGA 60.392 55.000 0.00 0.00 0.00 3.41
2308 2320 1.649664 CTTTGGGCGATGAGACAGAG 58.350 55.000 0.00 0.00 0.00 3.35
2309 2321 1.205655 CTTTGGGCGATGAGACAGAGA 59.794 52.381 0.00 0.00 0.00 3.10
2435 2447 3.724374 TGCACAGTTAACAGTCCTACAC 58.276 45.455 8.61 0.00 0.00 2.90
2446 2458 3.458044 AGTCCTACACTGATCACCTGA 57.542 47.619 0.00 0.00 32.26 3.86
2466 2481 6.915843 ACCTGAAATTTTGTTGTTACTTAGCG 59.084 34.615 0.00 0.00 0.00 4.26
2476 2491 0.458669 TTACTTAGCGAAGGGCCTCG 59.541 55.000 6.46 13.76 45.17 4.63
2517 2706 0.611896 TGGGCGATGAGACAGAGTGA 60.612 55.000 0.00 0.00 0.00 3.41
2518 2707 0.749649 GGGCGATGAGACAGAGTGAT 59.250 55.000 0.00 0.00 0.00 3.06
2519 2708 1.957177 GGGCGATGAGACAGAGTGATA 59.043 52.381 0.00 0.00 0.00 2.15
2591 2795 5.894298 ACTATCAGGTTGATGATTAGGCA 57.106 39.130 1.94 0.00 40.40 4.75
2625 2829 3.200165 AGTTAATCCTACAAGGGTCAGCC 59.800 47.826 0.00 0.00 35.59 4.85
2637 2841 2.025321 AGGGTCAGCCGGAATTTTACAT 60.025 45.455 5.05 0.00 34.97 2.29
2666 2870 6.920569 AATAAAACTAAGAATCGGCGATGT 57.079 33.333 24.73 13.54 0.00 3.06
2667 2871 8.332464 CAAATAAAACTAAGAATCGGCGATGTA 58.668 33.333 24.73 14.49 0.00 2.29
2668 2872 8.603242 AATAAAACTAAGAATCGGCGATGTAT 57.397 30.769 24.73 14.26 0.00 2.29
2669 2873 9.701098 AATAAAACTAAGAATCGGCGATGTATA 57.299 29.630 24.73 14.62 0.00 1.47
2670 2874 9.701098 ATAAAACTAAGAATCGGCGATGTATAA 57.299 29.630 24.73 7.53 0.00 0.98
2671 2875 8.603242 AAAACTAAGAATCGGCGATGTATAAT 57.397 30.769 24.73 6.13 0.00 1.28
2672 2876 7.582435 AACTAAGAATCGGCGATGTATAATG 57.418 36.000 24.73 12.58 0.00 1.90
2706 2910 0.323999 TGGACCTAGCTGTAGCCGAA 60.324 55.000 0.00 0.00 43.38 4.30
2741 2945 1.153745 GAGATGCTCAACGCGGAGT 60.154 57.895 12.47 0.00 43.27 3.85
2764 2968 1.061131 GACGCATGTGACGGAAGATTG 59.939 52.381 14.43 0.00 34.00 2.67
2767 2971 1.452110 CATGTGACGGAAGATTGGCA 58.548 50.000 0.00 0.00 0.00 4.92
2790 2994 2.359975 GGCGAACCCTGTTCCCAG 60.360 66.667 1.66 0.00 38.50 4.45
2848 3052 4.812476 TCGCACGCATTCTCCCGG 62.812 66.667 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.083858 TCGTTCTGCCAAAAATATTTTCTCAG 58.916 34.615 13.68 17.69 0.00 3.35
21 22 0.249953 TACCGCTCGTTCTGCCAAAA 60.250 50.000 0.00 0.00 0.00 2.44
54 55 7.220300 TGCGTTTTTAAAGCGAAAATTCACTTA 59.780 29.630 17.37 0.00 30.07 2.24
138 141 5.203370 CGATAAGTTAGTTATCTCGCACGT 58.797 41.667 15.29 0.00 43.52 4.49
179 182 3.854666 CCTGATTGGGCTATACAGATCG 58.145 50.000 0.00 0.00 0.00 3.69
407 414 4.493747 GCTCGACGCCGGCTAACT 62.494 66.667 26.68 3.32 36.24 2.24
529 536 4.340950 GGGACAAATCACTGAGGAAAACAA 59.659 41.667 0.00 0.00 0.00 2.83
573 580 6.434018 ACTACTAACGGATCTTCACACTAC 57.566 41.667 0.00 0.00 0.00 2.73
577 584 4.338012 TGGACTACTAACGGATCTTCACA 58.662 43.478 0.00 0.00 0.00 3.58
609 616 4.431471 CGCGCAACAAAACATAAACATCTG 60.431 41.667 8.75 0.00 0.00 2.90
633 640 5.829391 CCAAATCTACCAACCATGATCATCA 59.171 40.000 4.86 0.00 0.00 3.07
662 669 4.824289 AGCCCAAACAAGCATCTAATTTG 58.176 39.130 0.00 0.00 0.00 2.32
683 690 2.755103 GGAAACAGGGATAAGCCACAAG 59.245 50.000 0.00 0.00 38.95 3.16
719 726 8.516811 ACAACTATAAACAGAACACTAACTCG 57.483 34.615 0.00 0.00 0.00 4.18
764 772 2.299013 AGCACAGTATTTCGACAGACCA 59.701 45.455 0.00 0.00 0.00 4.02
795 803 5.861787 GGGTAAATCGAAATCCAAACAACAG 59.138 40.000 0.00 0.00 0.00 3.16
859 867 6.015265 GTGTTGGAAGAGGAAACTAGTCTAGT 60.015 42.308 6.71 6.71 44.43 2.57
877 885 0.394216 AGCAAGCTGTGTGTGTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
879 887 2.282701 AAAGCAAGCTGTGTGTGTTG 57.717 45.000 0.00 0.00 0.00 3.33
888 896 6.154445 ACAATGACATTAGAAAAGCAAGCTG 58.846 36.000 0.00 0.00 0.00 4.24
909 919 9.590451 AACGAGAAACGATATAGGAAAATACAA 57.410 29.630 0.00 0.00 45.77 2.41
952 963 1.082496 GCAAACACAGACGAGCAGC 60.082 57.895 0.00 0.00 0.00 5.25
1022 1033 3.828451 AGGCACATAGTTCTGCAACATTT 59.172 39.130 0.00 0.00 34.90 2.32
1074 1085 6.716628 TCAAATCTAAAGCACCTGAAATGTCT 59.283 34.615 0.00 0.00 0.00 3.41
1075 1086 6.913170 TCAAATCTAAAGCACCTGAAATGTC 58.087 36.000 0.00 0.00 0.00 3.06
1080 1091 6.061441 TGAACTCAAATCTAAAGCACCTGAA 58.939 36.000 0.00 0.00 0.00 3.02
1099 1110 6.095440 AGCAAACTTTGAACTACACATGAACT 59.905 34.615 0.00 0.00 0.00 3.01
1172 1183 5.539955 ACCAAATAGTGAAAACTGCCTTCAT 59.460 36.000 0.00 0.00 35.36 2.57
1177 1188 3.740832 GCAACCAAATAGTGAAAACTGCC 59.259 43.478 0.00 0.00 0.00 4.85
1258 1269 3.740764 GCACCATTCAGTTGGCAAAAGAA 60.741 43.478 15.22 15.22 40.68 2.52
1267 1278 4.012374 ACTATTGGAGCACCATTCAGTTG 58.988 43.478 2.87 0.00 46.34 3.16
1272 1283 4.392940 AGCATACTATTGGAGCACCATTC 58.607 43.478 2.87 0.00 46.34 2.67
1275 1286 3.041211 AGAGCATACTATTGGAGCACCA 58.959 45.455 0.00 0.00 45.34 4.17
1301 1312 5.184479 ACAAGTTGCAGCATATCACTGAAAT 59.816 36.000 2.55 0.00 35.16 2.17
1352 1363 2.490903 GGCAATTCAGTCAAGCATGAGT 59.509 45.455 0.00 0.00 39.89 3.41
1372 1383 3.872459 AGCTTCTGGATCATAAAGGGG 57.128 47.619 0.00 0.00 0.00 4.79
1380 1391 5.068855 CAGATGAGAGTAAGCTTCTGGATCA 59.931 44.000 0.00 2.91 34.49 2.92
1381 1392 5.068987 ACAGATGAGAGTAAGCTTCTGGATC 59.931 44.000 0.00 0.00 39.34 3.36
1402 1413 4.201792 GCAGCAAGACATACAGAATGACAG 60.202 45.833 0.00 0.00 39.69 3.51
1403 1414 3.686241 GCAGCAAGACATACAGAATGACA 59.314 43.478 0.00 0.00 39.69 3.58
1412 1423 1.661112 GGACTTCGCAGCAAGACATAC 59.339 52.381 10.47 0.00 0.00 2.39
1426 1437 8.131731 GGAAACAATAATCAGCTAATGGACTTC 58.868 37.037 0.00 0.00 0.00 3.01
1529 1540 1.359848 CGGTCTTCTTGATTGACCCG 58.640 55.000 13.60 0.00 45.31 5.28
1547 1558 1.059369 CGTGCGGATCTTCTTTGCG 59.941 57.895 0.00 0.00 0.00 4.85
1640 1651 4.039973 TGGTACTGGTCTAACTTGTTCCTG 59.960 45.833 0.00 0.00 0.00 3.86
1667 1678 1.274447 GTGGTAAGCGGGTACTTGAGT 59.726 52.381 0.00 0.00 0.00 3.41
1760 1771 0.036732 TCACGGCAGCCTTGATCTTT 59.963 50.000 16.61 0.00 26.56 2.52
1766 1777 0.667993 TCTTTTTCACGGCAGCCTTG 59.332 50.000 11.86 11.86 0.00 3.61
1796 1807 1.886542 GTGTTAACCTTCTTGGCCTGG 59.113 52.381 3.32 0.81 40.22 4.45
1820 1831 5.907207 TGTGAGCAGAATACTAACCTGATC 58.093 41.667 0.00 0.00 41.95 2.92
1829 1840 4.193826 ACGAACATGTGAGCAGAATACT 57.806 40.909 0.00 0.00 0.00 2.12
1874 1885 1.405463 CACCTAGCTGCACGTCATAGA 59.595 52.381 1.02 0.00 0.00 1.98
1965 1976 1.375908 GGCCACGTCAAGAGCATCA 60.376 57.895 0.00 0.00 37.82 3.07
2061 2072 7.646526 CCCTTTGCTAAGTAACAACTACAAAAC 59.353 37.037 7.14 0.00 32.37 2.43
2121 2132 5.849357 TTGCATCAAATTCATGAAAGTGC 57.151 34.783 13.09 16.79 32.06 4.40
2206 2217 5.661759 AGGTAAGTCGAAGGATGGTAAAGAT 59.338 40.000 0.00 0.00 0.00 2.40
2251 2262 2.227865 ACAAACACACACGAGCAAAACT 59.772 40.909 0.00 0.00 0.00 2.66
2279 2291 1.080974 CGCCCAAAGCAGCAAAGAG 60.081 57.895 0.00 0.00 44.04 2.85
2307 2319 2.254546 TCACATCACAAAACGGCTCT 57.745 45.000 0.00 0.00 0.00 4.09
2308 2320 4.882671 ATATCACATCACAAAACGGCTC 57.117 40.909 0.00 0.00 0.00 4.70
2309 2321 4.458989 ACAATATCACATCACAAAACGGCT 59.541 37.500 0.00 0.00 0.00 5.52
2435 2447 8.137437 AGTAACAACAAAATTTCAGGTGATCAG 58.863 33.333 13.66 0.00 0.00 2.90
2442 2454 7.136119 TCGCTAAGTAACAACAAAATTTCAGG 58.864 34.615 0.00 0.00 0.00 3.86
2446 2458 6.921307 CCCTTCGCTAAGTAACAACAAAATTT 59.079 34.615 0.00 0.00 0.00 1.82
2482 2497 2.652530 CAAAGCAGCGGCAATGGT 59.347 55.556 12.44 0.00 44.61 3.55
2517 2706 7.337480 TGCAAGCTTATGTCAATCACAATAT 57.663 32.000 0.00 0.00 38.97 1.28
2518 2707 6.756299 TGCAAGCTTATGTCAATCACAATA 57.244 33.333 0.00 0.00 38.97 1.90
2519 2708 5.648178 TGCAAGCTTATGTCAATCACAAT 57.352 34.783 0.00 0.00 38.97 2.71
2591 2795 9.494271 CTTGTAGGATTAACTGTGCATATGTAT 57.506 33.333 4.29 0.00 0.00 2.29
2600 2804 5.160607 TGACCCTTGTAGGATTAACTGTG 57.839 43.478 0.00 0.00 37.67 3.66
2625 2829 9.418045 AGTTTTATTTGGACATGTAAAATTCCG 57.582 29.630 18.90 0.00 31.22 4.30
2637 2841 6.402766 CGCCGATTCTTAGTTTTATTTGGACA 60.403 38.462 0.00 0.00 0.00 4.02
2706 2910 6.006449 AGCATCTCTAATTTGACTTGGTTGT 58.994 36.000 0.00 0.00 0.00 3.32
2741 2945 0.455464 CTTCCGTCACATGCGTCGTA 60.455 55.000 0.00 0.00 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.