Multiple sequence alignment - TraesCS2A01G353800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G353800 chr2A 100.000 4486 0 0 1 4486 594434657 594439142 0.000000e+00 8285.0
1 TraesCS2A01G353800 chr2D 95.677 3817 105 20 576 4370 450202561 450206339 0.000000e+00 6080.0
2 TraesCS2A01G353800 chr2D 91.827 208 8 3 343 550 450022471 450022669 9.500000e-72 281.0
3 TraesCS2A01G353800 chr2D 91.304 207 9 3 343 549 450137465 450137662 1.590000e-69 274.0
4 TraesCS2A01G353800 chr2D 91.736 121 1 2 4371 4483 450206369 450206488 4.640000e-35 159.0
5 TraesCS2A01G353800 chr2B 96.323 3100 93 6 361 3455 530270986 530274069 0.000000e+00 5073.0
6 TraesCS2A01G353800 chr2B 92.031 1029 38 20 3367 4370 530274080 530275089 0.000000e+00 1406.0
7 TraesCS2A01G353800 chr2B 96.460 113 3 1 4371 4483 530275119 530275230 7.660000e-43 185.0
8 TraesCS2A01G353800 chr7D 78.121 841 103 49 3426 4226 17266981 17267780 4.090000e-125 459.0
9 TraesCS2A01G353800 chr7A 81.870 353 49 13 3884 4226 16658818 16659165 2.640000e-72 283.0
10 TraesCS2A01G353800 chr4A 85.417 144 21 0 206 349 539892517 539892374 2.800000e-32 150.0
11 TraesCS2A01G353800 chr5A 96.970 33 1 0 4371 4403 78423850 78423818 6.270000e-04 56.5
12 TraesCS2A01G353800 chr6D 100.000 29 0 0 4455 4483 266247589 266247617 2.000000e-03 54.7
13 TraesCS2A01G353800 chr5B 100.000 29 0 0 4455 4483 520201492 520201520 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G353800 chr2A 594434657 594439142 4485 False 8285.000000 8285 100.0000 1 4486 1 chr2A.!!$F1 4485
1 TraesCS2A01G353800 chr2D 450202561 450206488 3927 False 3119.500000 6080 93.7065 576 4483 2 chr2D.!!$F3 3907
2 TraesCS2A01G353800 chr2B 530270986 530275230 4244 False 2221.333333 5073 94.9380 361 4483 3 chr2B.!!$F1 4122
3 TraesCS2A01G353800 chr7D 17266981 17267780 799 False 459.000000 459 78.1210 3426 4226 1 chr7D.!!$F1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.030101 CGAACATTTGTGGCGTTGGT 59.970 50.0 0.00 0.00 0.00 3.67 F
433 434 0.036164 CAAATCCACTCCACGGTCCA 59.964 55.0 0.00 0.00 0.00 4.02 F
434 435 0.036306 AAATCCACTCCACGGTCCAC 59.964 55.0 0.00 0.00 0.00 4.02 F
1375 1383 0.109086 TCTAGCTGCGCAGTGTCTTC 60.109 55.0 35.80 19.55 0.00 2.87 F
1383 1391 0.247460 CGCAGTGTCTTCCCATGAGA 59.753 55.0 0.00 0.00 0.00 3.27 F
2557 2565 0.757935 GATGGGATGGTTGCATGCCT 60.758 55.0 16.68 0.00 42.63 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1175 0.453390 CAGCCCGAGAGAAAAATGGC 59.547 55.000 0.00 0.00 39.17 4.40 R
1383 1391 1.298859 GAATCGAGCCGGCAGTTGTT 61.299 55.000 31.54 16.24 0.00 2.83 R
1958 1966 3.067742 CAGCTCCATTATTTTCTGGGCTG 59.932 47.826 13.69 13.69 43.66 4.85 R
3066 3074 1.542492 AGCAGTCAAGCAAATCCCTG 58.458 50.000 0.00 0.00 36.85 4.45 R
3200 3208 3.812053 CCTATACAGATTCTTGTGCAGCC 59.188 47.826 0.00 0.00 32.56 4.85 R
4281 4451 0.037590 AACCCGCCAGTTCAAGCATA 59.962 50.000 0.00 0.00 0.00 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.483869 GAGGCCGGGGCAGAAGAT 61.484 66.667 23.67 0.00 44.11 2.40
32 33 3.764160 GAGGCCGGGGCAGAAGATG 62.764 68.421 23.67 0.00 44.11 2.90
33 34 4.115199 GGCCGGGGCAGAAGATGT 62.115 66.667 16.76 0.00 44.11 3.06
34 35 2.825836 GCCGGGGCAGAAGATGTG 60.826 66.667 2.18 0.00 41.49 3.21
35 36 2.124570 CCGGGGCAGAAGATGTGG 60.125 66.667 0.00 0.00 0.00 4.17
36 37 2.124570 CGGGGCAGAAGATGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
37 38 2.440980 GGGGCAGAAGATGTGGGC 60.441 66.667 0.00 0.00 0.00 5.36
38 39 2.825836 GGGCAGAAGATGTGGGCG 60.826 66.667 0.00 0.00 0.00 6.13
39 40 3.512516 GGCAGAAGATGTGGGCGC 61.513 66.667 0.00 0.00 0.00 6.53
40 41 3.869272 GCAGAAGATGTGGGCGCG 61.869 66.667 0.00 0.00 0.00 6.86
41 42 3.197790 CAGAAGATGTGGGCGCGG 61.198 66.667 8.83 0.00 0.00 6.46
54 55 3.055719 CGCGGCCACCAGACAAAT 61.056 61.111 2.24 0.00 0.00 2.32
55 56 2.568090 GCGGCCACCAGACAAATG 59.432 61.111 2.24 0.00 0.00 2.32
56 57 1.971167 GCGGCCACCAGACAAATGA 60.971 57.895 2.24 0.00 0.00 2.57
57 58 1.523154 GCGGCCACCAGACAAATGAA 61.523 55.000 2.24 0.00 0.00 2.57
58 59 0.523072 CGGCCACCAGACAAATGAAG 59.477 55.000 2.24 0.00 0.00 3.02
59 60 1.881925 CGGCCACCAGACAAATGAAGA 60.882 52.381 2.24 0.00 0.00 2.87
60 61 2.238521 GGCCACCAGACAAATGAAGAA 58.761 47.619 0.00 0.00 0.00 2.52
61 62 2.627699 GGCCACCAGACAAATGAAGAAA 59.372 45.455 0.00 0.00 0.00 2.52
62 63 3.259123 GGCCACCAGACAAATGAAGAAAT 59.741 43.478 0.00 0.00 0.00 2.17
63 64 4.262592 GGCCACCAGACAAATGAAGAAATT 60.263 41.667 0.00 0.00 0.00 1.82
64 65 5.299949 GCCACCAGACAAATGAAGAAATTT 58.700 37.500 0.00 0.00 0.00 1.82
65 66 5.759763 GCCACCAGACAAATGAAGAAATTTT 59.240 36.000 0.00 0.00 0.00 1.82
66 67 6.293027 GCCACCAGACAAATGAAGAAATTTTG 60.293 38.462 0.00 0.00 36.62 2.44
67 68 6.762661 CCACCAGACAAATGAAGAAATTTTGT 59.237 34.615 0.29 0.29 44.02 2.83
72 73 7.678194 GACAAATGAAGAAATTTTGTCGTCA 57.322 32.000 10.79 0.00 45.17 4.35
73 74 8.285776 GACAAATGAAGAAATTTTGTCGTCAT 57.714 30.769 10.79 0.00 45.17 3.06
75 76 8.542132 ACAAATGAAGAAATTTTGTCGTCATTG 58.458 29.630 15.78 13.04 46.57 2.82
76 77 8.542132 CAAATGAAGAAATTTTGTCGTCATTGT 58.458 29.630 15.78 7.66 46.57 2.71
77 78 8.647143 AATGAAGAAATTTTGTCGTCATTGTT 57.353 26.923 14.86 0.00 45.97 2.83
78 79 7.448588 TGAAGAAATTTTGTCGTCATTGTTG 57.551 32.000 0.00 0.00 30.06 3.33
79 80 6.475076 TGAAGAAATTTTGTCGTCATTGTTGG 59.525 34.615 0.00 0.00 30.06 3.77
80 81 6.142818 AGAAATTTTGTCGTCATTGTTGGA 57.857 33.333 0.00 0.00 0.00 3.53
81 82 6.748132 AGAAATTTTGTCGTCATTGTTGGAT 58.252 32.000 0.00 0.00 0.00 3.41
82 83 6.642131 AGAAATTTTGTCGTCATTGTTGGATG 59.358 34.615 0.00 0.00 0.00 3.51
83 84 3.913548 TTTGTCGTCATTGTTGGATGG 57.086 42.857 0.00 0.00 0.00 3.51
84 85 1.164411 TGTCGTCATTGTTGGATGGC 58.836 50.000 0.00 0.00 0.00 4.40
85 86 1.271325 TGTCGTCATTGTTGGATGGCT 60.271 47.619 0.00 0.00 29.51 4.75
86 87 1.398390 GTCGTCATTGTTGGATGGCTC 59.602 52.381 0.00 0.00 29.51 4.70
87 88 0.734889 CGTCATTGTTGGATGGCTCC 59.265 55.000 0.00 0.00 42.45 4.70
88 89 1.106285 GTCATTGTTGGATGGCTCCC 58.894 55.000 1.34 0.00 41.29 4.30
89 90 0.703488 TCATTGTTGGATGGCTCCCA 59.297 50.000 1.34 0.00 41.29 4.37
90 91 1.076841 TCATTGTTGGATGGCTCCCAA 59.923 47.619 7.00 7.00 41.29 4.12
94 95 3.286404 TTGGATGGCTCCCAACATG 57.714 52.632 7.00 0.00 41.29 3.21
95 96 0.409092 TTGGATGGCTCCCAACATGT 59.591 50.000 7.00 0.00 41.29 3.21
96 97 0.034186 TGGATGGCTCCCAACATGTC 60.034 55.000 0.00 0.00 41.29 3.06
97 98 0.753111 GGATGGCTCCCAACATGTCC 60.753 60.000 0.00 0.00 36.95 4.02
98 99 1.077501 ATGGCTCCCAACATGTCCG 60.078 57.895 0.00 0.00 36.95 4.79
99 100 3.134127 GGCTCCCAACATGTCCGC 61.134 66.667 0.00 0.00 0.00 5.54
100 101 3.499737 GCTCCCAACATGTCCGCG 61.500 66.667 0.00 0.00 0.00 6.46
101 102 2.264480 CTCCCAACATGTCCGCGA 59.736 61.111 8.23 0.00 0.00 5.87
102 103 1.375396 CTCCCAACATGTCCGCGAA 60.375 57.895 8.23 0.00 0.00 4.70
103 104 1.635663 CTCCCAACATGTCCGCGAAC 61.636 60.000 8.23 0.00 0.00 3.95
104 105 1.963855 CCCAACATGTCCGCGAACA 60.964 57.895 8.23 2.81 0.00 3.18
105 106 1.305219 CCCAACATGTCCGCGAACAT 61.305 55.000 4.65 4.65 40.49 2.71
106 107 0.521291 CCAACATGTCCGCGAACATT 59.479 50.000 8.75 0.00 37.78 2.71
107 108 1.068610 CCAACATGTCCGCGAACATTT 60.069 47.619 8.75 0.00 37.78 2.32
108 109 1.978097 CAACATGTCCGCGAACATTTG 59.022 47.619 8.75 12.81 37.78 2.32
109 110 1.234821 ACATGTCCGCGAACATTTGT 58.765 45.000 8.75 3.00 37.78 2.83
110 111 1.069296 ACATGTCCGCGAACATTTGTG 60.069 47.619 8.75 0.90 37.78 3.33
111 112 0.521291 ATGTCCGCGAACATTTGTGG 59.479 50.000 4.65 5.22 42.44 4.17
112 113 1.442017 GTCCGCGAACATTTGTGGC 60.442 57.895 8.23 0.00 41.15 5.01
113 114 2.501650 CCGCGAACATTTGTGGCG 60.502 61.111 8.23 17.41 45.33 5.69
114 115 2.251075 CGCGAACATTTGTGGCGT 59.749 55.556 16.57 0.00 42.74 5.68
115 116 1.369930 CGCGAACATTTGTGGCGTT 60.370 52.632 16.57 0.00 42.74 4.84
116 117 1.595982 CGCGAACATTTGTGGCGTTG 61.596 55.000 16.57 4.65 42.74 4.10
117 118 1.274798 GCGAACATTTGTGGCGTTGG 61.275 55.000 0.00 0.00 0.00 3.77
118 119 0.030101 CGAACATTTGTGGCGTTGGT 59.970 50.000 0.00 0.00 0.00 3.67
119 120 1.535015 CGAACATTTGTGGCGTTGGTT 60.535 47.619 0.00 0.00 0.00 3.67
120 121 2.545731 GAACATTTGTGGCGTTGGTTT 58.454 42.857 0.00 0.00 0.00 3.27
121 122 3.707793 GAACATTTGTGGCGTTGGTTTA 58.292 40.909 0.00 0.00 0.00 2.01
122 123 3.802948 ACATTTGTGGCGTTGGTTTAA 57.197 38.095 0.00 0.00 0.00 1.52
123 124 3.712187 ACATTTGTGGCGTTGGTTTAAG 58.288 40.909 0.00 0.00 0.00 1.85
124 125 2.873133 TTTGTGGCGTTGGTTTAAGG 57.127 45.000 0.00 0.00 0.00 2.69
125 126 2.054232 TTGTGGCGTTGGTTTAAGGA 57.946 45.000 0.00 0.00 0.00 3.36
126 127 1.310904 TGTGGCGTTGGTTTAAGGAC 58.689 50.000 0.00 0.00 32.75 3.85
127 128 1.134037 TGTGGCGTTGGTTTAAGGACT 60.134 47.619 0.00 0.00 33.32 3.85
128 129 1.951602 GTGGCGTTGGTTTAAGGACTT 59.048 47.619 0.00 0.00 33.32 3.01
129 130 1.950909 TGGCGTTGGTTTAAGGACTTG 59.049 47.619 0.00 0.00 33.32 3.16
130 131 1.335597 GGCGTTGGTTTAAGGACTTGC 60.336 52.381 0.00 0.00 0.00 4.01
131 132 1.662026 GCGTTGGTTTAAGGACTTGCG 60.662 52.381 0.00 0.00 0.00 4.85
132 133 1.600485 CGTTGGTTTAAGGACTTGCGT 59.400 47.619 0.00 0.00 0.00 5.24
133 134 2.032426 CGTTGGTTTAAGGACTTGCGTT 59.968 45.455 0.00 0.00 0.00 4.84
134 135 3.368495 GTTGGTTTAAGGACTTGCGTTG 58.632 45.455 0.00 0.00 0.00 4.10
135 136 1.335496 TGGTTTAAGGACTTGCGTTGC 59.665 47.619 0.00 0.00 0.00 4.17
136 137 1.335496 GGTTTAAGGACTTGCGTTGCA 59.665 47.619 0.00 0.00 36.47 4.08
137 138 2.030274 GGTTTAAGGACTTGCGTTGCAT 60.030 45.455 0.00 0.00 38.76 3.96
138 139 3.189702 GGTTTAAGGACTTGCGTTGCATA 59.810 43.478 0.00 0.00 38.76 3.14
139 140 4.142469 GGTTTAAGGACTTGCGTTGCATAT 60.142 41.667 0.00 0.00 38.76 1.78
140 141 4.614555 TTAAGGACTTGCGTTGCATATG 57.385 40.909 0.00 0.00 38.76 1.78
141 142 0.734889 AGGACTTGCGTTGCATATGC 59.265 50.000 21.09 21.09 38.76 3.14
142 143 0.248621 GGACTTGCGTTGCATATGCC 60.249 55.000 24.54 9.81 38.76 4.40
143 144 0.734889 GACTTGCGTTGCATATGCCT 59.265 50.000 24.54 0.00 38.76 4.75
144 145 1.133025 GACTTGCGTTGCATATGCCTT 59.867 47.619 24.54 0.11 38.76 4.35
145 146 1.133025 ACTTGCGTTGCATATGCCTTC 59.867 47.619 24.54 13.28 38.76 3.46
146 147 1.132834 CTTGCGTTGCATATGCCTTCA 59.867 47.619 24.54 13.80 38.76 3.02
147 148 1.172175 TGCGTTGCATATGCCTTCAA 58.828 45.000 24.54 9.56 41.18 2.69
148 149 1.543358 TGCGTTGCATATGCCTTCAAA 59.457 42.857 24.54 9.18 41.18 2.69
149 150 2.029560 TGCGTTGCATATGCCTTCAAAA 60.030 40.909 24.54 8.44 41.18 2.44
150 151 2.345341 GCGTTGCATATGCCTTCAAAAC 59.655 45.455 24.54 18.24 41.18 2.43
151 152 2.593775 CGTTGCATATGCCTTCAAAACG 59.406 45.455 24.76 24.76 41.18 3.60
152 153 3.574614 GTTGCATATGCCTTCAAAACGT 58.425 40.909 24.54 0.00 41.18 3.99
153 154 3.214697 TGCATATGCCTTCAAAACGTG 57.785 42.857 24.54 0.00 41.18 4.49
154 155 2.094803 TGCATATGCCTTCAAAACGTGG 60.095 45.455 24.54 0.00 41.18 4.94
155 156 2.094752 GCATATGCCTTCAAAACGTGGT 60.095 45.455 17.26 0.00 34.31 4.16
156 157 3.127895 GCATATGCCTTCAAAACGTGGTA 59.872 43.478 17.26 0.00 34.31 3.25
157 158 4.658071 CATATGCCTTCAAAACGTGGTAC 58.342 43.478 0.00 0.00 0.00 3.34
158 159 2.335316 TGCCTTCAAAACGTGGTACT 57.665 45.000 0.00 0.00 0.00 2.73
159 160 2.645802 TGCCTTCAAAACGTGGTACTT 58.354 42.857 0.00 0.00 0.00 2.24
160 161 3.806380 TGCCTTCAAAACGTGGTACTTA 58.194 40.909 0.00 0.00 0.00 2.24
161 162 3.810941 TGCCTTCAAAACGTGGTACTTAG 59.189 43.478 0.00 0.00 0.00 2.18
162 163 4.060205 GCCTTCAAAACGTGGTACTTAGA 58.940 43.478 0.00 0.00 0.00 2.10
163 164 4.151867 GCCTTCAAAACGTGGTACTTAGAG 59.848 45.833 0.00 0.00 0.00 2.43
164 165 4.689345 CCTTCAAAACGTGGTACTTAGAGG 59.311 45.833 0.00 0.00 0.00 3.69
165 166 4.261578 TCAAAACGTGGTACTTAGAGGG 57.738 45.455 0.00 0.00 0.00 4.30
166 167 3.896888 TCAAAACGTGGTACTTAGAGGGA 59.103 43.478 0.00 0.00 0.00 4.20
167 168 4.529377 TCAAAACGTGGTACTTAGAGGGAT 59.471 41.667 0.00 0.00 0.00 3.85
168 169 5.012354 TCAAAACGTGGTACTTAGAGGGATT 59.988 40.000 0.00 0.00 0.00 3.01
169 170 6.211184 TCAAAACGTGGTACTTAGAGGGATTA 59.789 38.462 0.00 0.00 0.00 1.75
170 171 6.803366 AAACGTGGTACTTAGAGGGATTAT 57.197 37.500 0.00 0.00 0.00 1.28
171 172 7.902920 AAACGTGGTACTTAGAGGGATTATA 57.097 36.000 0.00 0.00 0.00 0.98
172 173 8.488308 AAACGTGGTACTTAGAGGGATTATAT 57.512 34.615 0.00 0.00 0.00 0.86
173 174 9.592196 AAACGTGGTACTTAGAGGGATTATATA 57.408 33.333 0.00 0.00 0.00 0.86
174 175 8.572855 ACGTGGTACTTAGAGGGATTATATAC 57.427 38.462 0.00 0.00 0.00 1.47
175 176 8.166061 ACGTGGTACTTAGAGGGATTATATACA 58.834 37.037 0.00 0.00 0.00 2.29
176 177 9.186837 CGTGGTACTTAGAGGGATTATATACAT 57.813 37.037 0.00 0.00 0.00 2.29
206 207 9.535878 TTTTACAACAATCCAAGATAAAACACC 57.464 29.630 0.00 0.00 0.00 4.16
207 208 6.976934 ACAACAATCCAAGATAAAACACCT 57.023 33.333 0.00 0.00 0.00 4.00
208 209 7.360113 ACAACAATCCAAGATAAAACACCTT 57.640 32.000 0.00 0.00 0.00 3.50
209 210 8.472007 ACAACAATCCAAGATAAAACACCTTA 57.528 30.769 0.00 0.00 0.00 2.69
210 211 8.576442 ACAACAATCCAAGATAAAACACCTTAG 58.424 33.333 0.00 0.00 0.00 2.18
211 212 7.703058 ACAATCCAAGATAAAACACCTTAGG 57.297 36.000 0.00 0.00 0.00 2.69
212 213 6.152831 ACAATCCAAGATAAAACACCTTAGGC 59.847 38.462 0.00 0.00 0.00 3.93
213 214 4.595986 TCCAAGATAAAACACCTTAGGCC 58.404 43.478 0.00 0.00 0.00 5.19
214 215 4.291249 TCCAAGATAAAACACCTTAGGCCT 59.709 41.667 11.78 11.78 0.00 5.19
215 216 5.016831 CCAAGATAAAACACCTTAGGCCTT 58.983 41.667 12.58 0.00 0.00 4.35
216 217 5.105756 CCAAGATAAAACACCTTAGGCCTTG 60.106 44.000 12.58 5.36 0.00 3.61
217 218 5.256806 AGATAAAACACCTTAGGCCTTGT 57.743 39.130 12.58 6.20 0.00 3.16
218 219 5.641155 AGATAAAACACCTTAGGCCTTGTT 58.359 37.500 12.58 13.28 33.59 2.83
219 220 5.710567 AGATAAAACACCTTAGGCCTTGTTC 59.289 40.000 18.55 8.39 30.92 3.18
220 221 3.306472 AAACACCTTAGGCCTTGTTCA 57.694 42.857 18.55 0.00 30.92 3.18
221 222 2.568623 ACACCTTAGGCCTTGTTCAG 57.431 50.000 12.58 0.00 0.00 3.02
222 223 1.774856 ACACCTTAGGCCTTGTTCAGT 59.225 47.619 12.58 0.00 0.00 3.41
223 224 2.174854 ACACCTTAGGCCTTGTTCAGTT 59.825 45.455 12.58 0.00 0.00 3.16
224 225 3.393278 ACACCTTAGGCCTTGTTCAGTTA 59.607 43.478 12.58 0.00 0.00 2.24
225 226 4.141344 ACACCTTAGGCCTTGTTCAGTTAA 60.141 41.667 12.58 0.00 0.00 2.01
226 227 5.010282 CACCTTAGGCCTTGTTCAGTTAAT 58.990 41.667 12.58 0.00 0.00 1.40
227 228 5.123979 CACCTTAGGCCTTGTTCAGTTAATC 59.876 44.000 12.58 0.00 0.00 1.75
228 229 4.640647 CCTTAGGCCTTGTTCAGTTAATCC 59.359 45.833 12.58 0.00 0.00 3.01
229 230 3.087370 AGGCCTTGTTCAGTTAATCCC 57.913 47.619 0.00 0.00 0.00 3.85
230 231 2.100197 GGCCTTGTTCAGTTAATCCCC 58.900 52.381 0.00 0.00 0.00 4.81
231 232 2.556559 GGCCTTGTTCAGTTAATCCCCA 60.557 50.000 0.00 0.00 0.00 4.96
232 233 2.492088 GCCTTGTTCAGTTAATCCCCAC 59.508 50.000 0.00 0.00 0.00 4.61
233 234 3.089284 CCTTGTTCAGTTAATCCCCACC 58.911 50.000 0.00 0.00 0.00 4.61
234 235 3.499563 CCTTGTTCAGTTAATCCCCACCA 60.500 47.826 0.00 0.00 0.00 4.17
235 236 3.149005 TGTTCAGTTAATCCCCACCAC 57.851 47.619 0.00 0.00 0.00 4.16
236 237 2.443632 TGTTCAGTTAATCCCCACCACA 59.556 45.455 0.00 0.00 0.00 4.17
237 238 3.117474 TGTTCAGTTAATCCCCACCACAA 60.117 43.478 0.00 0.00 0.00 3.33
238 239 3.885976 TCAGTTAATCCCCACCACAAA 57.114 42.857 0.00 0.00 0.00 2.83
239 240 4.186077 TCAGTTAATCCCCACCACAAAA 57.814 40.909 0.00 0.00 0.00 2.44
240 241 4.148838 TCAGTTAATCCCCACCACAAAAG 58.851 43.478 0.00 0.00 0.00 2.27
241 242 3.258123 CAGTTAATCCCCACCACAAAAGG 59.742 47.826 0.00 0.00 0.00 3.11
242 243 3.141272 AGTTAATCCCCACCACAAAAGGA 59.859 43.478 0.00 0.00 0.00 3.36
243 244 4.093743 GTTAATCCCCACCACAAAAGGAT 58.906 43.478 0.00 0.00 39.02 3.24
244 245 3.274281 AATCCCCACCACAAAAGGATT 57.726 42.857 0.00 0.00 41.43 3.01
245 246 2.008242 TCCCCACCACAAAAGGATTG 57.992 50.000 0.00 0.00 0.00 2.67
246 247 1.501170 TCCCCACCACAAAAGGATTGA 59.499 47.619 0.00 0.00 0.00 2.57
247 248 2.091055 TCCCCACCACAAAAGGATTGAA 60.091 45.455 0.00 0.00 0.00 2.69
248 249 2.299867 CCCCACCACAAAAGGATTGAAG 59.700 50.000 0.00 0.00 0.00 3.02
249 250 3.230134 CCCACCACAAAAGGATTGAAGA 58.770 45.455 0.00 0.00 0.00 2.87
250 251 3.256631 CCCACCACAAAAGGATTGAAGAG 59.743 47.826 0.00 0.00 0.00 2.85
251 252 3.256631 CCACCACAAAAGGATTGAAGAGG 59.743 47.826 0.00 0.00 0.00 3.69
252 253 4.144297 CACCACAAAAGGATTGAAGAGGA 58.856 43.478 0.00 0.00 0.00 3.71
253 254 4.768968 CACCACAAAAGGATTGAAGAGGAT 59.231 41.667 0.00 0.00 0.00 3.24
254 255 5.244626 CACCACAAAAGGATTGAAGAGGATT 59.755 40.000 0.00 0.00 0.00 3.01
255 256 5.244626 ACCACAAAAGGATTGAAGAGGATTG 59.755 40.000 0.00 0.00 0.00 2.67
256 257 5.337009 CCACAAAAGGATTGAAGAGGATTGG 60.337 44.000 0.00 0.00 0.00 3.16
257 258 5.477984 CACAAAAGGATTGAAGAGGATTGGA 59.522 40.000 0.00 0.00 0.00 3.53
258 259 5.713861 ACAAAAGGATTGAAGAGGATTGGAG 59.286 40.000 0.00 0.00 0.00 3.86
259 260 5.786121 AAAGGATTGAAGAGGATTGGAGA 57.214 39.130 0.00 0.00 0.00 3.71
260 261 5.370875 AAGGATTGAAGAGGATTGGAGAG 57.629 43.478 0.00 0.00 0.00 3.20
261 262 4.629122 AGGATTGAAGAGGATTGGAGAGA 58.371 43.478 0.00 0.00 0.00 3.10
262 263 5.226015 AGGATTGAAGAGGATTGGAGAGAT 58.774 41.667 0.00 0.00 0.00 2.75
263 264 5.671276 AGGATTGAAGAGGATTGGAGAGATT 59.329 40.000 0.00 0.00 0.00 2.40
264 265 6.160105 AGGATTGAAGAGGATTGGAGAGATTT 59.840 38.462 0.00 0.00 0.00 2.17
265 266 6.262720 GGATTGAAGAGGATTGGAGAGATTTG 59.737 42.308 0.00 0.00 0.00 2.32
266 267 6.378661 TTGAAGAGGATTGGAGAGATTTGA 57.621 37.500 0.00 0.00 0.00 2.69
267 268 6.572182 TGAAGAGGATTGGAGAGATTTGAT 57.428 37.500 0.00 0.00 0.00 2.57
268 269 7.681259 TGAAGAGGATTGGAGAGATTTGATA 57.319 36.000 0.00 0.00 0.00 2.15
269 270 8.272659 TGAAGAGGATTGGAGAGATTTGATAT 57.727 34.615 0.00 0.00 0.00 1.63
270 271 8.155510 TGAAGAGGATTGGAGAGATTTGATATG 58.844 37.037 0.00 0.00 0.00 1.78
271 272 7.018487 AGAGGATTGGAGAGATTTGATATGG 57.982 40.000 0.00 0.00 0.00 2.74
272 273 6.791466 AGAGGATTGGAGAGATTTGATATGGA 59.209 38.462 0.00 0.00 0.00 3.41
273 274 7.461684 AGAGGATTGGAGAGATTTGATATGGAT 59.538 37.037 0.00 0.00 0.00 3.41
274 275 7.997915 AGGATTGGAGAGATTTGATATGGATT 58.002 34.615 0.00 0.00 0.00 3.01
275 276 8.454494 AGGATTGGAGAGATTTGATATGGATTT 58.546 33.333 0.00 0.00 0.00 2.17
276 277 9.086758 GGATTGGAGAGATTTGATATGGATTTT 57.913 33.333 0.00 0.00 0.00 1.82
277 278 9.909644 GATTGGAGAGATTTGATATGGATTTTG 57.090 33.333 0.00 0.00 0.00 2.44
278 279 9.650714 ATTGGAGAGATTTGATATGGATTTTGA 57.349 29.630 0.00 0.00 0.00 2.69
279 280 8.455903 TGGAGAGATTTGATATGGATTTTGAC 57.544 34.615 0.00 0.00 0.00 3.18
280 281 8.277197 TGGAGAGATTTGATATGGATTTTGACT 58.723 33.333 0.00 0.00 0.00 3.41
281 282 9.129532 GGAGAGATTTGATATGGATTTTGACTT 57.870 33.333 0.00 0.00 0.00 3.01
282 283 9.947669 GAGAGATTTGATATGGATTTTGACTTG 57.052 33.333 0.00 0.00 0.00 3.16
283 284 8.411683 AGAGATTTGATATGGATTTTGACTTGC 58.588 33.333 0.00 0.00 0.00 4.01
284 285 7.495055 AGATTTGATATGGATTTTGACTTGCC 58.505 34.615 0.00 0.00 0.00 4.52
285 286 4.898829 TGATATGGATTTTGACTTGCCG 57.101 40.909 0.00 0.00 0.00 5.69
286 287 4.522114 TGATATGGATTTTGACTTGCCGA 58.478 39.130 0.00 0.00 0.00 5.54
287 288 5.132502 TGATATGGATTTTGACTTGCCGAT 58.867 37.500 0.00 0.00 0.00 4.18
288 289 3.788333 ATGGATTTTGACTTGCCGATG 57.212 42.857 0.00 0.00 0.00 3.84
289 290 2.789213 TGGATTTTGACTTGCCGATGA 58.211 42.857 0.00 0.00 0.00 2.92
290 291 3.355378 TGGATTTTGACTTGCCGATGAT 58.645 40.909 0.00 0.00 0.00 2.45
291 292 3.763360 TGGATTTTGACTTGCCGATGATT 59.237 39.130 0.00 0.00 0.00 2.57
292 293 4.220382 TGGATTTTGACTTGCCGATGATTT 59.780 37.500 0.00 0.00 0.00 2.17
293 294 5.417266 TGGATTTTGACTTGCCGATGATTTA 59.583 36.000 0.00 0.00 0.00 1.40
294 295 6.071672 TGGATTTTGACTTGCCGATGATTTAA 60.072 34.615 0.00 0.00 0.00 1.52
295 296 6.980397 GGATTTTGACTTGCCGATGATTTAAT 59.020 34.615 0.00 0.00 0.00 1.40
296 297 7.168135 GGATTTTGACTTGCCGATGATTTAATC 59.832 37.037 0.00 0.00 0.00 1.75
297 298 5.499139 TTGACTTGCCGATGATTTAATCC 57.501 39.130 2.22 0.00 0.00 3.01
298 299 3.882888 TGACTTGCCGATGATTTAATCCC 59.117 43.478 2.22 0.00 0.00 3.85
299 300 4.137543 GACTTGCCGATGATTTAATCCCT 58.862 43.478 2.22 0.00 0.00 4.20
300 301 5.163248 TGACTTGCCGATGATTTAATCCCTA 60.163 40.000 2.22 0.00 0.00 3.53
301 302 5.063880 ACTTGCCGATGATTTAATCCCTAC 58.936 41.667 2.22 0.00 0.00 3.18
302 303 4.015872 TGCCGATGATTTAATCCCTACC 57.984 45.455 2.22 0.00 0.00 3.18
303 304 3.392947 TGCCGATGATTTAATCCCTACCA 59.607 43.478 2.22 0.00 0.00 3.25
304 305 4.141367 TGCCGATGATTTAATCCCTACCAA 60.141 41.667 2.22 0.00 0.00 3.67
305 306 5.010282 GCCGATGATTTAATCCCTACCAAT 58.990 41.667 2.22 0.00 0.00 3.16
306 307 5.476945 GCCGATGATTTAATCCCTACCAATT 59.523 40.000 2.22 0.00 0.00 2.32
307 308 6.015434 GCCGATGATTTAATCCCTACCAATTT 60.015 38.462 2.22 0.00 0.00 1.82
308 309 7.370383 CCGATGATTTAATCCCTACCAATTTG 58.630 38.462 2.22 0.00 0.00 2.32
309 310 6.863126 CGATGATTTAATCCCTACCAATTTGC 59.137 38.462 2.22 0.00 0.00 3.68
310 311 7.255590 CGATGATTTAATCCCTACCAATTTGCT 60.256 37.037 2.22 0.00 0.00 3.91
311 312 7.732222 TGATTTAATCCCTACCAATTTGCTT 57.268 32.000 2.22 0.00 0.00 3.91
312 313 7.781056 TGATTTAATCCCTACCAATTTGCTTC 58.219 34.615 2.22 0.00 0.00 3.86
313 314 7.398618 TGATTTAATCCCTACCAATTTGCTTCA 59.601 33.333 2.22 0.00 0.00 3.02
314 315 7.546250 TTTAATCCCTACCAATTTGCTTCAA 57.454 32.000 0.00 0.00 0.00 2.69
315 316 7.546250 TTAATCCCTACCAATTTGCTTCAAA 57.454 32.000 0.00 0.00 37.75 2.69
316 317 4.864704 TCCCTACCAATTTGCTTCAAAC 57.135 40.909 0.00 0.00 36.13 2.93
317 318 3.576550 TCCCTACCAATTTGCTTCAAACC 59.423 43.478 0.00 0.00 36.13 3.27
318 319 3.306710 CCCTACCAATTTGCTTCAAACCC 60.307 47.826 0.00 0.00 36.13 4.11
319 320 3.578282 CCTACCAATTTGCTTCAAACCCT 59.422 43.478 0.00 0.00 36.13 4.34
320 321 4.040339 CCTACCAATTTGCTTCAAACCCTT 59.960 41.667 0.00 0.00 36.13 3.95
321 322 4.502105 ACCAATTTGCTTCAAACCCTTT 57.498 36.364 0.00 0.00 36.13 3.11
322 323 5.622346 ACCAATTTGCTTCAAACCCTTTA 57.378 34.783 0.00 0.00 36.13 1.85
323 324 5.995446 ACCAATTTGCTTCAAACCCTTTAA 58.005 33.333 0.00 0.00 36.13 1.52
324 325 6.418946 ACCAATTTGCTTCAAACCCTTTAAA 58.581 32.000 0.00 0.00 36.13 1.52
325 326 6.887002 ACCAATTTGCTTCAAACCCTTTAAAA 59.113 30.769 0.00 0.00 36.13 1.52
326 327 7.148154 ACCAATTTGCTTCAAACCCTTTAAAAC 60.148 33.333 0.00 0.00 36.13 2.43
327 328 6.935741 ATTTGCTTCAAACCCTTTAAAACC 57.064 33.333 0.00 0.00 36.13 3.27
328 329 4.409718 TGCTTCAAACCCTTTAAAACCC 57.590 40.909 0.00 0.00 0.00 4.11
329 330 4.034410 TGCTTCAAACCCTTTAAAACCCT 58.966 39.130 0.00 0.00 0.00 4.34
330 331 4.141824 TGCTTCAAACCCTTTAAAACCCTG 60.142 41.667 0.00 0.00 0.00 4.45
331 332 4.141801 GCTTCAAACCCTTTAAAACCCTGT 60.142 41.667 0.00 0.00 0.00 4.00
332 333 5.346181 TTCAAACCCTTTAAAACCCTGTG 57.654 39.130 0.00 0.00 0.00 3.66
333 334 3.707102 TCAAACCCTTTAAAACCCTGTGG 59.293 43.478 0.00 0.00 37.80 4.17
334 335 3.691698 AACCCTTTAAAACCCTGTGGA 57.308 42.857 0.00 0.00 34.81 4.02
335 336 3.691698 ACCCTTTAAAACCCTGTGGAA 57.308 42.857 0.00 0.00 34.81 3.53
336 337 3.302161 ACCCTTTAAAACCCTGTGGAAC 58.698 45.455 0.00 0.00 34.81 3.62
337 338 2.631062 CCCTTTAAAACCCTGTGGAACC 59.369 50.000 0.00 0.00 34.36 3.62
338 339 2.295070 CCTTTAAAACCCTGTGGAACCG 59.705 50.000 0.00 0.00 34.36 4.44
339 340 3.215975 CTTTAAAACCCTGTGGAACCGA 58.784 45.455 0.00 0.00 34.36 4.69
340 341 3.294038 TTAAAACCCTGTGGAACCGAA 57.706 42.857 0.00 0.00 34.36 4.30
341 342 1.395635 AAAACCCTGTGGAACCGAAC 58.604 50.000 0.00 0.00 34.36 3.95
342 343 0.256464 AAACCCTGTGGAACCGAACA 59.744 50.000 0.00 0.00 34.36 3.18
343 344 0.256464 AACCCTGTGGAACCGAACAA 59.744 50.000 0.00 0.00 34.36 2.83
344 345 0.179029 ACCCTGTGGAACCGAACAAG 60.179 55.000 0.00 0.00 34.36 3.16
345 346 0.107831 CCCTGTGGAACCGAACAAGA 59.892 55.000 0.00 0.00 34.36 3.02
346 347 1.226746 CCTGTGGAACCGAACAAGAC 58.773 55.000 0.00 0.00 34.36 3.01
347 348 1.226746 CTGTGGAACCGAACAAGACC 58.773 55.000 0.00 0.00 34.36 3.85
348 349 0.834612 TGTGGAACCGAACAAGACCT 59.165 50.000 0.00 0.00 34.36 3.85
349 350 1.210967 TGTGGAACCGAACAAGACCTT 59.789 47.619 0.00 0.00 34.36 3.50
350 351 2.435069 TGTGGAACCGAACAAGACCTTA 59.565 45.455 0.00 0.00 34.36 2.69
351 352 3.064931 GTGGAACCGAACAAGACCTTAG 58.935 50.000 0.00 0.00 0.00 2.18
352 353 2.038033 TGGAACCGAACAAGACCTTAGG 59.962 50.000 0.00 0.00 0.00 2.69
353 354 2.614734 GGAACCGAACAAGACCTTAGGG 60.615 54.545 2.32 0.00 38.88 3.53
354 355 2.019807 ACCGAACAAGACCTTAGGGA 57.980 50.000 2.32 0.00 36.25 4.20
355 356 2.547990 ACCGAACAAGACCTTAGGGAT 58.452 47.619 2.32 0.00 36.25 3.85
356 357 2.910977 ACCGAACAAGACCTTAGGGATT 59.089 45.455 2.32 0.00 36.25 3.01
357 358 3.055312 ACCGAACAAGACCTTAGGGATTC 60.055 47.826 2.32 0.00 36.25 2.52
358 359 3.532542 CGAACAAGACCTTAGGGATTCC 58.467 50.000 2.32 0.00 36.25 3.01
359 360 3.532542 GAACAAGACCTTAGGGATTCCG 58.467 50.000 2.32 0.00 38.33 4.30
366 367 1.612463 CCTTAGGGATTCCGTACCGAG 59.388 57.143 4.61 0.97 38.33 4.63
406 407 1.000731 CTGGATGGATCTCCGCTTCTC 59.999 57.143 0.00 0.00 38.21 2.87
425 426 1.278127 TCCGGTCTTCAAATCCACTCC 59.722 52.381 0.00 0.00 0.00 3.85
429 430 2.076863 GTCTTCAAATCCACTCCACGG 58.923 52.381 0.00 0.00 0.00 4.94
430 431 1.697432 TCTTCAAATCCACTCCACGGT 59.303 47.619 0.00 0.00 0.00 4.83
431 432 2.076863 CTTCAAATCCACTCCACGGTC 58.923 52.381 0.00 0.00 0.00 4.79
432 433 0.323629 TCAAATCCACTCCACGGTCC 59.676 55.000 0.00 0.00 0.00 4.46
433 434 0.036164 CAAATCCACTCCACGGTCCA 59.964 55.000 0.00 0.00 0.00 4.02
434 435 0.036306 AAATCCACTCCACGGTCCAC 59.964 55.000 0.00 0.00 0.00 4.02
478 479 2.202623 GGATGACGCGACGCTTCT 60.203 61.111 24.26 11.85 0.00 2.85
479 480 1.805945 GGATGACGCGACGCTTCTT 60.806 57.895 24.26 18.98 0.00 2.52
645 646 2.113139 CCGTGAGTGGTTGGCCTT 59.887 61.111 3.32 0.00 35.27 4.35
646 647 1.966451 CCGTGAGTGGTTGGCCTTC 60.966 63.158 3.32 0.00 35.27 3.46
647 648 1.071471 CGTGAGTGGTTGGCCTTCT 59.929 57.895 3.32 0.00 35.27 2.85
716 718 0.397187 CAGCTCCCATCCCATCTCAG 59.603 60.000 0.00 0.00 0.00 3.35
717 719 0.767446 AGCTCCCATCCCATCTCAGG 60.767 60.000 0.00 0.00 0.00 3.86
786 793 4.335584 GCTCGGAGGCGATCTCGG 62.336 72.222 7.20 7.22 43.34 4.63
932 939 1.008327 TCACCTCTCAGGCCTCCAATA 59.992 52.381 0.00 0.00 39.63 1.90
1044 1051 1.337728 TGTAGTTGCATCAGTCCACCG 60.338 52.381 0.00 0.00 0.00 4.94
1168 1175 4.492160 CGCCATTGCTGCAGGCTG 62.492 66.667 24.72 10.94 46.14 4.85
1177 1184 1.017701 GCTGCAGGCTGCCATTTTTC 61.018 55.000 34.58 12.86 44.23 2.29
1240 1247 5.123820 ACCTTGGTGATCAATGTACAATTCG 59.876 40.000 0.00 0.00 33.47 3.34
1269 1276 5.561679 ACTTGGGTTCCATAGTTTCTCTTC 58.438 41.667 0.00 0.00 31.53 2.87
1320 1328 2.229792 CTTTTGCACTTGTCCTAGGCA 58.770 47.619 2.96 2.51 0.00 4.75
1333 1341 3.630298 TAGGCAAATTGCGGCGGGA 62.630 57.895 12.15 0.00 46.21 5.14
1375 1383 0.109086 TCTAGCTGCGCAGTGTCTTC 60.109 55.000 35.80 19.55 0.00 2.87
1383 1391 0.247460 CGCAGTGTCTTCCCATGAGA 59.753 55.000 0.00 0.00 0.00 3.27
1557 1565 5.182950 GGTATTGAATGGTGTGATTGTGTCA 59.817 40.000 0.00 0.00 0.00 3.58
1698 1706 2.369860 TGCAAGAGATCAGACACCTGTT 59.630 45.455 0.00 0.00 41.16 3.16
1758 1766 4.321718 GCAAGCTTCCTGATGCTGATATA 58.678 43.478 8.14 0.00 40.98 0.86
1958 1966 6.862608 TGTGTTAACTTCAAATGCATCATCAC 59.137 34.615 7.22 0.00 0.00 3.06
2377 2385 3.134458 CAGTCTGGACTTGTTGTTCCTC 58.866 50.000 0.00 0.00 40.20 3.71
2502 2510 4.855340 TGCATAAGGAAGAACTAAAGGGG 58.145 43.478 0.00 0.00 0.00 4.79
2529 2537 4.577693 TCTGCTTCAGATGTGATTAATGCC 59.422 41.667 0.00 0.00 35.39 4.40
2557 2565 0.757935 GATGGGATGGTTGCATGCCT 60.758 55.000 16.68 0.00 42.63 4.75
2698 2706 6.818644 TCTCCAACAGATACAGAAAATAGCAC 59.181 38.462 0.00 0.00 0.00 4.40
2700 2708 5.220662 CCAACAGATACAGAAAATAGCACCG 60.221 44.000 0.00 0.00 0.00 4.94
2963 2971 4.273318 AGACCCAATCTGCATACCTTTTC 58.727 43.478 0.00 0.00 35.81 2.29
3045 3053 4.201599 GGAGAAATAAAACGCAGACTCGAC 60.202 45.833 2.06 0.00 0.00 4.20
3093 3101 6.294508 GGGATTTGCTTGACTGCTTAGTTTTA 60.295 38.462 0.00 0.00 0.00 1.52
3183 3191 5.600908 TTTACTGCGACAAGTGGAAATAC 57.399 39.130 0.00 0.00 0.00 1.89
3191 3199 1.474077 CAAGTGGAAATACAGGCAGGC 59.526 52.381 0.00 0.00 0.00 4.85
3200 3208 0.615331 TACAGGCAGGCCTTTCTGAG 59.385 55.000 29.03 9.73 45.70 3.35
3468 3575 0.178975 ATTGGGCAAACCGTTGGAGA 60.179 50.000 0.00 0.00 44.64 3.71
3519 3641 2.505407 ACTATGCTGCAACCTATGTGGA 59.495 45.455 6.36 0.00 39.71 4.02
3523 3645 2.094675 GCTGCAACCTATGTGGATTGT 58.905 47.619 0.00 0.00 39.71 2.71
3524 3646 2.159338 GCTGCAACCTATGTGGATTGTG 60.159 50.000 0.00 0.00 39.71 3.33
3525 3647 1.818060 TGCAACCTATGTGGATTGTGC 59.182 47.619 0.00 0.00 39.71 4.57
3526 3648 1.134946 GCAACCTATGTGGATTGTGCC 59.865 52.381 0.00 0.00 39.71 5.01
3527 3649 1.750778 CAACCTATGTGGATTGTGCCC 59.249 52.381 0.00 0.00 39.71 5.36
3528 3650 0.998928 ACCTATGTGGATTGTGCCCA 59.001 50.000 0.00 0.00 39.71 5.36
3564 3686 6.100134 TGTTCTATTCATGTCCCTGATGATCA 59.900 38.462 0.00 0.00 29.96 2.92
3741 3865 7.328737 CACTGCTCGGTTATATTTGGAGTATAC 59.671 40.741 0.00 0.00 0.00 1.47
3882 4018 1.337167 TGCAGTCAGTGGAGATGTTCG 60.337 52.381 0.00 0.00 0.00 3.95
3942 4086 7.201145 TCTGTAGTTGAGTGTTTGACTACTTC 58.799 38.462 12.14 0.00 42.94 3.01
3949 4093 5.070446 TGAGTGTTTGACTACTTCCTGACAT 59.930 40.000 0.00 0.00 33.83 3.06
4029 4189 2.622942 GTTGATTCTGTTGCTGGAACCA 59.377 45.455 9.61 0.00 33.07 3.67
4155 4325 2.392821 GTTGCATGCGTTGAAATGACA 58.607 42.857 14.09 0.00 0.00 3.58
4166 4336 5.911280 GCGTTGAAATGACATGAATGGATAG 59.089 40.000 0.00 0.00 0.00 2.08
4176 4346 6.041523 TGACATGAATGGATAGATGTACCGAA 59.958 38.462 0.00 0.00 0.00 4.30
4265 4435 6.824958 ATGATGGTACTAACATTGTAGGGT 57.175 37.500 0.00 0.00 0.00 4.34
4281 4451 1.438814 GGTTTGTTGCTGCTGCTGT 59.561 52.632 17.00 0.00 40.48 4.40
4282 4452 0.667993 GGTTTGTTGCTGCTGCTGTA 59.332 50.000 17.00 0.48 40.48 2.74
4296 4477 0.097674 GCTGTATGCTTGAACTGGCG 59.902 55.000 0.00 0.00 38.95 5.69
4309 4490 3.008157 TGAACTGGCGGGTTGTAGATTAA 59.992 43.478 0.00 0.00 0.00 1.40
4316 4497 4.877251 GGCGGGTTGTAGATTAACATGTTA 59.123 41.667 14.35 14.35 0.00 2.41
4320 4503 8.614346 GCGGGTTGTAGATTAACATGTTATTTA 58.386 33.333 18.69 5.08 0.00 1.40
4346 4529 1.110518 GCAAAAGTTCACCCCGGGAA 61.111 55.000 26.32 5.26 0.00 3.97
4348 4531 0.826256 AAAAGTTCACCCCGGGAAGC 60.826 55.000 26.32 9.26 0.00 3.86
4412 4624 2.819608 CCCCAAAATTTCTCAGCGAAGA 59.180 45.455 0.00 0.00 32.21 2.87
4417 4629 6.128742 CCCAAAATTTCTCAGCGAAGAAAATG 60.129 38.462 16.95 15.24 45.62 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.483869 ATCTTCTGCCCCGGCCTC 61.484 66.667 0.00 0.00 41.09 4.70
15 16 3.801997 CATCTTCTGCCCCGGCCT 61.802 66.667 0.00 0.00 41.09 5.19
16 17 4.115199 ACATCTTCTGCCCCGGCC 62.115 66.667 2.62 0.00 41.09 6.13
17 18 2.825836 CACATCTTCTGCCCCGGC 60.826 66.667 0.00 0.00 42.35 6.13
18 19 2.124570 CCACATCTTCTGCCCCGG 60.125 66.667 0.00 0.00 0.00 5.73
19 20 2.124570 CCCACATCTTCTGCCCCG 60.125 66.667 0.00 0.00 0.00 5.73
20 21 2.440980 GCCCACATCTTCTGCCCC 60.441 66.667 0.00 0.00 0.00 5.80
21 22 2.825836 CGCCCACATCTTCTGCCC 60.826 66.667 0.00 0.00 0.00 5.36
22 23 3.512516 GCGCCCACATCTTCTGCC 61.513 66.667 0.00 0.00 0.00 4.85
23 24 3.869272 CGCGCCCACATCTTCTGC 61.869 66.667 0.00 0.00 0.00 4.26
24 25 3.197790 CCGCGCCCACATCTTCTG 61.198 66.667 0.00 0.00 0.00 3.02
37 38 3.055719 ATTTGTCTGGTGGCCGCG 61.056 61.111 10.86 0.00 0.00 6.46
38 39 1.523154 TTCATTTGTCTGGTGGCCGC 61.523 55.000 8.12 8.12 0.00 6.53
39 40 0.523072 CTTCATTTGTCTGGTGGCCG 59.477 55.000 0.00 0.00 0.00 6.13
40 41 1.909700 TCTTCATTTGTCTGGTGGCC 58.090 50.000 0.00 0.00 0.00 5.36
41 42 4.525912 ATTTCTTCATTTGTCTGGTGGC 57.474 40.909 0.00 0.00 0.00 5.01
42 43 6.762661 ACAAAATTTCTTCATTTGTCTGGTGG 59.237 34.615 0.00 0.00 41.97 4.61
43 44 7.775397 ACAAAATTTCTTCATTTGTCTGGTG 57.225 32.000 0.00 0.00 41.97 4.17
49 50 8.542132 CAATGACGACAAAATTTCTTCATTTGT 58.458 29.630 7.32 3.04 46.67 2.83
50 51 8.542132 ACAATGACGACAAAATTTCTTCATTTG 58.458 29.630 7.32 0.00 38.96 2.32
51 52 8.647143 ACAATGACGACAAAATTTCTTCATTT 57.353 26.923 7.32 0.49 38.96 2.32
52 53 8.542132 CAACAATGACGACAAAATTTCTTCATT 58.458 29.630 5.10 5.10 40.64 2.57
53 54 7.169645 CCAACAATGACGACAAAATTTCTTCAT 59.830 33.333 0.00 0.00 34.38 2.57
54 55 6.475076 CCAACAATGACGACAAAATTTCTTCA 59.525 34.615 0.00 0.00 0.00 3.02
55 56 6.695278 TCCAACAATGACGACAAAATTTCTTC 59.305 34.615 0.00 0.00 0.00 2.87
56 57 6.568869 TCCAACAATGACGACAAAATTTCTT 58.431 32.000 0.00 0.00 0.00 2.52
57 58 6.142818 TCCAACAATGACGACAAAATTTCT 57.857 33.333 0.00 0.00 0.00 2.52
58 59 6.128849 CCATCCAACAATGACGACAAAATTTC 60.129 38.462 0.00 0.00 0.00 2.17
59 60 5.695816 CCATCCAACAATGACGACAAAATTT 59.304 36.000 0.00 0.00 0.00 1.82
60 61 5.229423 CCATCCAACAATGACGACAAAATT 58.771 37.500 0.00 0.00 0.00 1.82
61 62 4.808558 CCATCCAACAATGACGACAAAAT 58.191 39.130 0.00 0.00 0.00 1.82
62 63 3.551863 GCCATCCAACAATGACGACAAAA 60.552 43.478 0.00 0.00 0.00 2.44
63 64 2.030363 GCCATCCAACAATGACGACAAA 60.030 45.455 0.00 0.00 0.00 2.83
64 65 1.539388 GCCATCCAACAATGACGACAA 59.461 47.619 0.00 0.00 0.00 3.18
65 66 1.164411 GCCATCCAACAATGACGACA 58.836 50.000 0.00 0.00 0.00 4.35
66 67 1.398390 GAGCCATCCAACAATGACGAC 59.602 52.381 0.00 0.00 0.00 4.34
67 68 1.678728 GGAGCCATCCAACAATGACGA 60.679 52.381 0.00 0.00 45.87 4.20
68 69 0.734889 GGAGCCATCCAACAATGACG 59.265 55.000 0.00 0.00 45.87 4.35
78 79 0.753111 GGACATGTTGGGAGCCATCC 60.753 60.000 0.00 0.00 45.85 3.51
79 80 1.097547 CGGACATGTTGGGAGCCATC 61.098 60.000 0.00 0.00 31.53 3.51
80 81 1.077501 CGGACATGTTGGGAGCCAT 60.078 57.895 0.00 0.00 31.53 4.40
81 82 2.350895 CGGACATGTTGGGAGCCA 59.649 61.111 0.00 0.00 0.00 4.75
82 83 3.134127 GCGGACATGTTGGGAGCC 61.134 66.667 0.00 0.00 0.00 4.70
83 84 3.499737 CGCGGACATGTTGGGAGC 61.500 66.667 0.00 0.92 0.00 4.70
84 85 1.375396 TTCGCGGACATGTTGGGAG 60.375 57.895 6.13 4.62 0.00 4.30
85 86 1.669760 GTTCGCGGACATGTTGGGA 60.670 57.895 14.01 12.71 0.00 4.37
86 87 1.305219 ATGTTCGCGGACATGTTGGG 61.305 55.000 31.58 4.75 38.75 4.12
87 88 0.521291 AATGTTCGCGGACATGTTGG 59.479 50.000 32.63 0.00 40.03 3.77
88 89 1.978097 CAAATGTTCGCGGACATGTTG 59.022 47.619 32.63 28.67 40.03 3.33
89 90 1.606668 ACAAATGTTCGCGGACATGTT 59.393 42.857 32.63 23.44 40.03 2.71
90 91 1.069296 CACAAATGTTCGCGGACATGT 60.069 47.619 32.63 25.56 40.03 3.21
91 92 1.605500 CACAAATGTTCGCGGACATG 58.394 50.000 32.63 24.61 40.03 3.21
92 93 0.521291 CCACAAATGTTCGCGGACAT 59.479 50.000 27.30 27.30 41.83 3.06
93 94 1.945522 CCACAAATGTTCGCGGACA 59.054 52.632 24.85 24.85 0.00 4.02
94 95 1.442017 GCCACAAATGTTCGCGGAC 60.442 57.895 11.62 11.62 0.00 4.79
95 96 2.950673 GCCACAAATGTTCGCGGA 59.049 55.556 6.13 0.00 0.00 5.54
96 97 2.501650 CGCCACAAATGTTCGCGG 60.502 61.111 6.13 1.17 39.30 6.46
97 98 1.369930 AACGCCACAAATGTTCGCG 60.370 52.632 18.18 18.18 44.84 5.87
98 99 1.274798 CCAACGCCACAAATGTTCGC 61.275 55.000 5.27 0.07 0.00 4.70
99 100 0.030101 ACCAACGCCACAAATGTTCG 59.970 50.000 4.15 4.15 0.00 3.95
100 101 2.217429 AACCAACGCCACAAATGTTC 57.783 45.000 0.00 0.00 0.00 3.18
101 102 2.682155 AAACCAACGCCACAAATGTT 57.318 40.000 0.00 0.00 0.00 2.71
102 103 3.491792 CCTTAAACCAACGCCACAAATGT 60.492 43.478 0.00 0.00 0.00 2.71
103 104 3.056304 CCTTAAACCAACGCCACAAATG 58.944 45.455 0.00 0.00 0.00 2.32
104 105 2.959707 TCCTTAAACCAACGCCACAAAT 59.040 40.909 0.00 0.00 0.00 2.32
105 106 2.099427 GTCCTTAAACCAACGCCACAAA 59.901 45.455 0.00 0.00 0.00 2.83
106 107 1.677052 GTCCTTAAACCAACGCCACAA 59.323 47.619 0.00 0.00 0.00 3.33
107 108 1.134037 AGTCCTTAAACCAACGCCACA 60.134 47.619 0.00 0.00 0.00 4.17
108 109 1.601166 AGTCCTTAAACCAACGCCAC 58.399 50.000 0.00 0.00 0.00 5.01
109 110 1.950909 CAAGTCCTTAAACCAACGCCA 59.049 47.619 0.00 0.00 0.00 5.69
110 111 1.335597 GCAAGTCCTTAAACCAACGCC 60.336 52.381 0.00 0.00 0.00 5.68
111 112 1.662026 CGCAAGTCCTTAAACCAACGC 60.662 52.381 0.00 0.00 0.00 4.84
112 113 2.309898 CGCAAGTCCTTAAACCAACG 57.690 50.000 0.00 0.00 0.00 4.10
126 127 1.132834 TGAAGGCATATGCAACGCAAG 59.867 47.619 28.07 0.00 43.62 4.01
127 128 1.172175 TGAAGGCATATGCAACGCAA 58.828 45.000 28.07 6.49 43.62 4.85
128 129 1.172175 TTGAAGGCATATGCAACGCA 58.828 45.000 28.07 16.79 44.86 5.24
129 130 2.276472 TTTGAAGGCATATGCAACGC 57.724 45.000 28.07 14.56 44.36 4.84
130 131 2.593775 CGTTTTGAAGGCATATGCAACG 59.406 45.455 28.07 26.14 44.36 4.10
131 132 3.364621 CACGTTTTGAAGGCATATGCAAC 59.635 43.478 28.07 19.93 44.36 4.17
132 133 3.573598 CACGTTTTGAAGGCATATGCAA 58.426 40.909 28.07 11.75 44.36 4.08
133 134 2.094803 CCACGTTTTGAAGGCATATGCA 60.095 45.455 28.07 5.66 44.36 3.96
134 135 2.094752 ACCACGTTTTGAAGGCATATGC 60.095 45.455 19.79 19.79 41.14 3.14
135 136 3.848272 ACCACGTTTTGAAGGCATATG 57.152 42.857 0.00 0.00 0.00 1.78
136 137 4.585879 AGTACCACGTTTTGAAGGCATAT 58.414 39.130 0.00 0.00 0.00 1.78
137 138 4.010667 AGTACCACGTTTTGAAGGCATA 57.989 40.909 0.00 0.00 0.00 3.14
138 139 2.858745 AGTACCACGTTTTGAAGGCAT 58.141 42.857 0.00 0.00 0.00 4.40
139 140 2.335316 AGTACCACGTTTTGAAGGCA 57.665 45.000 0.00 0.00 0.00 4.75
140 141 4.060205 TCTAAGTACCACGTTTTGAAGGC 58.940 43.478 0.00 0.00 0.00 4.35
141 142 4.689345 CCTCTAAGTACCACGTTTTGAAGG 59.311 45.833 0.00 0.00 0.00 3.46
142 143 4.689345 CCCTCTAAGTACCACGTTTTGAAG 59.311 45.833 0.00 0.00 0.00 3.02
143 144 4.344679 TCCCTCTAAGTACCACGTTTTGAA 59.655 41.667 0.00 0.00 0.00 2.69
144 145 3.896888 TCCCTCTAAGTACCACGTTTTGA 59.103 43.478 0.00 0.00 0.00 2.69
145 146 4.261578 TCCCTCTAAGTACCACGTTTTG 57.738 45.455 0.00 0.00 0.00 2.44
146 147 5.494390 AATCCCTCTAAGTACCACGTTTT 57.506 39.130 0.00 0.00 0.00 2.43
147 148 6.803366 ATAATCCCTCTAAGTACCACGTTT 57.197 37.500 0.00 0.00 0.00 3.60
148 149 9.018582 GTATATAATCCCTCTAAGTACCACGTT 57.981 37.037 0.00 0.00 0.00 3.99
149 150 8.166061 TGTATATAATCCCTCTAAGTACCACGT 58.834 37.037 0.00 0.00 0.00 4.49
150 151 8.571461 TGTATATAATCCCTCTAAGTACCACG 57.429 38.462 0.00 0.00 0.00 4.94
180 181 9.535878 GGTGTTTTATCTTGGATTGTTGTAAAA 57.464 29.630 0.00 0.00 0.00 1.52
181 182 8.919145 AGGTGTTTTATCTTGGATTGTTGTAAA 58.081 29.630 0.00 0.00 0.00 2.01
182 183 8.472007 AGGTGTTTTATCTTGGATTGTTGTAA 57.528 30.769 0.00 0.00 0.00 2.41
183 184 8.472007 AAGGTGTTTTATCTTGGATTGTTGTA 57.528 30.769 0.00 0.00 0.00 2.41
184 185 6.976934 AGGTGTTTTATCTTGGATTGTTGT 57.023 33.333 0.00 0.00 0.00 3.32
185 186 8.028938 CCTAAGGTGTTTTATCTTGGATTGTTG 58.971 37.037 0.00 0.00 30.02 3.33
186 187 7.309805 GCCTAAGGTGTTTTATCTTGGATTGTT 60.310 37.037 0.00 0.00 30.02 2.83
187 188 6.152831 GCCTAAGGTGTTTTATCTTGGATTGT 59.847 38.462 0.00 0.00 30.02 2.71
188 189 6.405842 GGCCTAAGGTGTTTTATCTTGGATTG 60.406 42.308 0.00 0.00 30.02 2.67
189 190 5.656859 GGCCTAAGGTGTTTTATCTTGGATT 59.343 40.000 0.00 0.00 30.02 3.01
190 191 5.044105 AGGCCTAAGGTGTTTTATCTTGGAT 60.044 40.000 1.29 0.00 30.02 3.41
191 192 4.291249 AGGCCTAAGGTGTTTTATCTTGGA 59.709 41.667 1.29 0.00 30.02 3.53
192 193 4.600062 AGGCCTAAGGTGTTTTATCTTGG 58.400 43.478 1.29 0.00 30.72 3.61
193 194 5.476945 ACAAGGCCTAAGGTGTTTTATCTTG 59.523 40.000 5.16 0.00 30.72 3.02
194 195 5.641155 ACAAGGCCTAAGGTGTTTTATCTT 58.359 37.500 5.16 0.00 33.35 2.40
195 196 5.256806 ACAAGGCCTAAGGTGTTTTATCT 57.743 39.130 5.16 0.00 0.00 1.98
196 197 5.475564 TGAACAAGGCCTAAGGTGTTTTATC 59.524 40.000 19.13 9.20 34.44 1.75
197 198 5.390387 TGAACAAGGCCTAAGGTGTTTTAT 58.610 37.500 19.13 0.03 34.44 1.40
198 199 4.794334 TGAACAAGGCCTAAGGTGTTTTA 58.206 39.130 19.13 10.62 34.44 1.52
199 200 3.636764 CTGAACAAGGCCTAAGGTGTTTT 59.363 43.478 19.13 1.05 34.44 2.43
200 201 3.222603 CTGAACAAGGCCTAAGGTGTTT 58.777 45.455 19.13 6.00 34.44 2.83
201 202 2.174854 ACTGAACAAGGCCTAAGGTGTT 59.825 45.455 18.37 18.37 36.92 3.32
202 203 1.774856 ACTGAACAAGGCCTAAGGTGT 59.225 47.619 5.16 3.12 0.00 4.16
203 204 2.568623 ACTGAACAAGGCCTAAGGTG 57.431 50.000 5.16 2.28 0.00 4.00
204 205 4.717279 TTAACTGAACAAGGCCTAAGGT 57.283 40.909 5.16 0.00 0.00 3.50
205 206 4.640647 GGATTAACTGAACAAGGCCTAAGG 59.359 45.833 5.16 0.60 0.00 2.69
206 207 4.640647 GGGATTAACTGAACAAGGCCTAAG 59.359 45.833 5.16 4.24 0.00 2.18
207 208 4.569015 GGGGATTAACTGAACAAGGCCTAA 60.569 45.833 5.16 0.00 0.00 2.69
208 209 3.053917 GGGGATTAACTGAACAAGGCCTA 60.054 47.826 5.16 0.00 0.00 3.93
209 210 2.291605 GGGGATTAACTGAACAAGGCCT 60.292 50.000 0.00 0.00 0.00 5.19
210 211 2.100197 GGGGATTAACTGAACAAGGCC 58.900 52.381 0.00 0.00 0.00 5.19
211 212 2.492088 GTGGGGATTAACTGAACAAGGC 59.508 50.000 0.00 0.00 0.00 4.35
212 213 3.089284 GGTGGGGATTAACTGAACAAGG 58.911 50.000 0.00 0.00 0.00 3.61
213 214 3.506067 GTGGTGGGGATTAACTGAACAAG 59.494 47.826 0.00 0.00 0.00 3.16
214 215 3.117474 TGTGGTGGGGATTAACTGAACAA 60.117 43.478 0.00 0.00 0.00 2.83
215 216 2.443632 TGTGGTGGGGATTAACTGAACA 59.556 45.455 0.00 0.00 0.00 3.18
216 217 3.149005 TGTGGTGGGGATTAACTGAAC 57.851 47.619 0.00 0.00 0.00 3.18
217 218 3.885976 TTGTGGTGGGGATTAACTGAA 57.114 42.857 0.00 0.00 0.00 3.02
218 219 3.885976 TTTGTGGTGGGGATTAACTGA 57.114 42.857 0.00 0.00 0.00 3.41
219 220 3.258123 CCTTTTGTGGTGGGGATTAACTG 59.742 47.826 0.00 0.00 0.00 3.16
220 221 3.141272 TCCTTTTGTGGTGGGGATTAACT 59.859 43.478 0.00 0.00 0.00 2.24
221 222 3.502356 TCCTTTTGTGGTGGGGATTAAC 58.498 45.455 0.00 0.00 0.00 2.01
222 223 3.905493 TCCTTTTGTGGTGGGGATTAA 57.095 42.857 0.00 0.00 0.00 1.40
223 224 4.093011 CAATCCTTTTGTGGTGGGGATTA 58.907 43.478 0.00 0.00 42.63 1.75
224 225 2.905736 CAATCCTTTTGTGGTGGGGATT 59.094 45.455 0.00 0.00 44.53 3.01
225 226 2.111613 TCAATCCTTTTGTGGTGGGGAT 59.888 45.455 0.00 0.00 38.29 3.85
226 227 1.501170 TCAATCCTTTTGTGGTGGGGA 59.499 47.619 0.00 0.00 0.00 4.81
227 228 2.008242 TCAATCCTTTTGTGGTGGGG 57.992 50.000 0.00 0.00 0.00 4.96
228 229 3.230134 TCTTCAATCCTTTTGTGGTGGG 58.770 45.455 0.00 0.00 0.00 4.61
229 230 3.256631 CCTCTTCAATCCTTTTGTGGTGG 59.743 47.826 0.00 0.00 0.00 4.61
230 231 4.144297 TCCTCTTCAATCCTTTTGTGGTG 58.856 43.478 0.00 0.00 0.00 4.17
231 232 4.453480 TCCTCTTCAATCCTTTTGTGGT 57.547 40.909 0.00 0.00 0.00 4.16
232 233 5.337009 CCAATCCTCTTCAATCCTTTTGTGG 60.337 44.000 0.00 0.00 0.00 4.17
233 234 5.477984 TCCAATCCTCTTCAATCCTTTTGTG 59.522 40.000 0.00 0.00 0.00 3.33
234 235 5.644188 TCCAATCCTCTTCAATCCTTTTGT 58.356 37.500 0.00 0.00 0.00 2.83
235 236 5.948162 TCTCCAATCCTCTTCAATCCTTTTG 59.052 40.000 0.00 0.00 0.00 2.44
236 237 6.012157 TCTCTCCAATCCTCTTCAATCCTTTT 60.012 38.462 0.00 0.00 0.00 2.27
237 238 5.490357 TCTCTCCAATCCTCTTCAATCCTTT 59.510 40.000 0.00 0.00 0.00 3.11
238 239 5.035556 TCTCTCCAATCCTCTTCAATCCTT 58.964 41.667 0.00 0.00 0.00 3.36
239 240 4.629122 TCTCTCCAATCCTCTTCAATCCT 58.371 43.478 0.00 0.00 0.00 3.24
240 241 5.565455 ATCTCTCCAATCCTCTTCAATCC 57.435 43.478 0.00 0.00 0.00 3.01
241 242 7.052873 TCAAATCTCTCCAATCCTCTTCAATC 58.947 38.462 0.00 0.00 0.00 2.67
242 243 6.966751 TCAAATCTCTCCAATCCTCTTCAAT 58.033 36.000 0.00 0.00 0.00 2.57
243 244 6.378661 TCAAATCTCTCCAATCCTCTTCAA 57.621 37.500 0.00 0.00 0.00 2.69
244 245 6.572182 ATCAAATCTCTCCAATCCTCTTCA 57.428 37.500 0.00 0.00 0.00 3.02
245 246 7.607223 CCATATCAAATCTCTCCAATCCTCTTC 59.393 40.741 0.00 0.00 0.00 2.87
246 247 7.294245 TCCATATCAAATCTCTCCAATCCTCTT 59.706 37.037 0.00 0.00 0.00 2.85
247 248 6.791466 TCCATATCAAATCTCTCCAATCCTCT 59.209 38.462 0.00 0.00 0.00 3.69
248 249 7.013823 TCCATATCAAATCTCTCCAATCCTC 57.986 40.000 0.00 0.00 0.00 3.71
249 250 7.585884 ATCCATATCAAATCTCTCCAATCCT 57.414 36.000 0.00 0.00 0.00 3.24
250 251 8.647256 AAATCCATATCAAATCTCTCCAATCC 57.353 34.615 0.00 0.00 0.00 3.01
251 252 9.909644 CAAAATCCATATCAAATCTCTCCAATC 57.090 33.333 0.00 0.00 0.00 2.67
252 253 9.650714 TCAAAATCCATATCAAATCTCTCCAAT 57.349 29.630 0.00 0.00 0.00 3.16
253 254 8.906867 GTCAAAATCCATATCAAATCTCTCCAA 58.093 33.333 0.00 0.00 0.00 3.53
254 255 8.277197 AGTCAAAATCCATATCAAATCTCTCCA 58.723 33.333 0.00 0.00 0.00 3.86
255 256 8.688747 AGTCAAAATCCATATCAAATCTCTCC 57.311 34.615 0.00 0.00 0.00 3.71
256 257 9.947669 CAAGTCAAAATCCATATCAAATCTCTC 57.052 33.333 0.00 0.00 0.00 3.20
257 258 8.411683 GCAAGTCAAAATCCATATCAAATCTCT 58.588 33.333 0.00 0.00 0.00 3.10
258 259 7.650903 GGCAAGTCAAAATCCATATCAAATCTC 59.349 37.037 0.00 0.00 0.00 2.75
259 260 7.495055 GGCAAGTCAAAATCCATATCAAATCT 58.505 34.615 0.00 0.00 0.00 2.40
260 261 6.418819 CGGCAAGTCAAAATCCATATCAAATC 59.581 38.462 0.00 0.00 0.00 2.17
261 262 6.096705 TCGGCAAGTCAAAATCCATATCAAAT 59.903 34.615 0.00 0.00 0.00 2.32
262 263 5.417266 TCGGCAAGTCAAAATCCATATCAAA 59.583 36.000 0.00 0.00 0.00 2.69
263 264 4.946772 TCGGCAAGTCAAAATCCATATCAA 59.053 37.500 0.00 0.00 0.00 2.57
264 265 4.522114 TCGGCAAGTCAAAATCCATATCA 58.478 39.130 0.00 0.00 0.00 2.15
265 266 5.239306 TCATCGGCAAGTCAAAATCCATATC 59.761 40.000 0.00 0.00 0.00 1.63
266 267 5.132502 TCATCGGCAAGTCAAAATCCATAT 58.867 37.500 0.00 0.00 0.00 1.78
267 268 4.522114 TCATCGGCAAGTCAAAATCCATA 58.478 39.130 0.00 0.00 0.00 2.74
268 269 3.355378 TCATCGGCAAGTCAAAATCCAT 58.645 40.909 0.00 0.00 0.00 3.41
269 270 2.789213 TCATCGGCAAGTCAAAATCCA 58.211 42.857 0.00 0.00 0.00 3.41
270 271 4.376340 AATCATCGGCAAGTCAAAATCC 57.624 40.909 0.00 0.00 0.00 3.01
271 272 7.168135 GGATTAAATCATCGGCAAGTCAAAATC 59.832 37.037 0.00 0.00 0.00 2.17
272 273 6.980397 GGATTAAATCATCGGCAAGTCAAAAT 59.020 34.615 0.00 0.00 0.00 1.82
273 274 6.329496 GGATTAAATCATCGGCAAGTCAAAA 58.671 36.000 0.00 0.00 0.00 2.44
274 275 5.163561 GGGATTAAATCATCGGCAAGTCAAA 60.164 40.000 0.00 0.00 0.00 2.69
275 276 4.338118 GGGATTAAATCATCGGCAAGTCAA 59.662 41.667 0.00 0.00 0.00 3.18
276 277 3.882888 GGGATTAAATCATCGGCAAGTCA 59.117 43.478 0.00 0.00 0.00 3.41
277 278 4.137543 AGGGATTAAATCATCGGCAAGTC 58.862 43.478 0.00 0.00 0.00 3.01
278 279 4.170468 AGGGATTAAATCATCGGCAAGT 57.830 40.909 0.00 0.00 0.00 3.16
279 280 4.455877 GGTAGGGATTAAATCATCGGCAAG 59.544 45.833 0.00 0.00 0.00 4.01
280 281 4.141367 TGGTAGGGATTAAATCATCGGCAA 60.141 41.667 0.00 0.00 0.00 4.52
281 282 3.392947 TGGTAGGGATTAAATCATCGGCA 59.607 43.478 0.00 0.00 0.00 5.69
282 283 4.015872 TGGTAGGGATTAAATCATCGGC 57.984 45.455 0.00 0.00 0.00 5.54
283 284 7.370383 CAAATTGGTAGGGATTAAATCATCGG 58.630 38.462 0.00 0.00 0.00 4.18
284 285 6.863126 GCAAATTGGTAGGGATTAAATCATCG 59.137 38.462 0.00 0.00 0.00 3.84
285 286 7.955918 AGCAAATTGGTAGGGATTAAATCATC 58.044 34.615 0.00 0.00 0.00 2.92
286 287 7.919385 AGCAAATTGGTAGGGATTAAATCAT 57.081 32.000 0.00 0.00 0.00 2.45
287 288 7.398618 TGAAGCAAATTGGTAGGGATTAAATCA 59.601 33.333 0.00 0.00 0.00 2.57
288 289 7.781056 TGAAGCAAATTGGTAGGGATTAAATC 58.219 34.615 0.00 0.00 0.00 2.17
289 290 7.732222 TGAAGCAAATTGGTAGGGATTAAAT 57.268 32.000 0.00 0.00 0.00 1.40
290 291 7.546250 TTGAAGCAAATTGGTAGGGATTAAA 57.454 32.000 0.00 0.00 0.00 1.52
291 292 7.382898 GTTTGAAGCAAATTGGTAGGGATTAA 58.617 34.615 0.00 0.00 35.74 1.40
292 293 6.071051 GGTTTGAAGCAAATTGGTAGGGATTA 60.071 38.462 0.00 0.00 35.74 1.75
293 294 5.279960 GGTTTGAAGCAAATTGGTAGGGATT 60.280 40.000 0.00 0.00 35.74 3.01
294 295 4.222810 GGTTTGAAGCAAATTGGTAGGGAT 59.777 41.667 0.00 0.00 35.74 3.85
295 296 3.576550 GGTTTGAAGCAAATTGGTAGGGA 59.423 43.478 0.00 0.00 35.74 4.20
296 297 3.306710 GGGTTTGAAGCAAATTGGTAGGG 60.307 47.826 0.00 0.00 35.74 3.53
297 298 3.578282 AGGGTTTGAAGCAAATTGGTAGG 59.422 43.478 0.00 0.00 35.74 3.18
298 299 4.871933 AGGGTTTGAAGCAAATTGGTAG 57.128 40.909 0.00 0.00 35.74 3.18
299 300 5.622346 AAAGGGTTTGAAGCAAATTGGTA 57.378 34.783 0.00 0.00 35.74 3.25
300 301 4.502105 AAAGGGTTTGAAGCAAATTGGT 57.498 36.364 0.00 0.00 35.74 3.67
301 302 6.934048 TTTAAAGGGTTTGAAGCAAATTGG 57.066 33.333 0.00 0.00 35.74 3.16
302 303 7.192913 GGTTTTAAAGGGTTTGAAGCAAATTG 58.807 34.615 0.00 0.00 35.74 2.32
303 304 6.320164 GGGTTTTAAAGGGTTTGAAGCAAATT 59.680 34.615 0.00 0.00 35.74 1.82
304 305 5.825679 GGGTTTTAAAGGGTTTGAAGCAAAT 59.174 36.000 0.00 0.00 35.74 2.32
305 306 5.045505 AGGGTTTTAAAGGGTTTGAAGCAAA 60.046 36.000 0.00 0.00 0.00 3.68
306 307 4.471747 AGGGTTTTAAAGGGTTTGAAGCAA 59.528 37.500 0.00 0.00 0.00 3.91
307 308 4.034410 AGGGTTTTAAAGGGTTTGAAGCA 58.966 39.130 0.00 0.00 0.00 3.91
308 309 4.141801 ACAGGGTTTTAAAGGGTTTGAAGC 60.142 41.667 0.00 0.00 0.00 3.86
309 310 5.356426 CACAGGGTTTTAAAGGGTTTGAAG 58.644 41.667 0.00 0.00 0.00 3.02
310 311 4.162509 CCACAGGGTTTTAAAGGGTTTGAA 59.837 41.667 0.00 0.00 0.00 2.69
311 312 3.707102 CCACAGGGTTTTAAAGGGTTTGA 59.293 43.478 0.00 0.00 0.00 2.69
312 313 3.707102 TCCACAGGGTTTTAAAGGGTTTG 59.293 43.478 0.00 0.00 34.93 2.93
313 314 3.996957 TCCACAGGGTTTTAAAGGGTTT 58.003 40.909 0.00 0.00 34.93 3.27
314 315 3.691698 TCCACAGGGTTTTAAAGGGTT 57.308 42.857 0.00 0.00 34.93 4.11
315 316 3.302161 GTTCCACAGGGTTTTAAAGGGT 58.698 45.455 0.00 0.00 34.93 4.34
316 317 2.631062 GGTTCCACAGGGTTTTAAAGGG 59.369 50.000 0.00 0.00 34.93 3.95
317 318 2.295070 CGGTTCCACAGGGTTTTAAAGG 59.705 50.000 0.00 0.00 34.93 3.11
318 319 3.215975 TCGGTTCCACAGGGTTTTAAAG 58.784 45.455 0.00 0.00 34.93 1.85
319 320 3.294038 TCGGTTCCACAGGGTTTTAAA 57.706 42.857 0.00 0.00 34.93 1.52
320 321 2.950975 GTTCGGTTCCACAGGGTTTTAA 59.049 45.455 0.00 0.00 34.93 1.52
321 322 2.092538 TGTTCGGTTCCACAGGGTTTTA 60.093 45.455 0.00 0.00 34.93 1.52
322 323 1.341187 TGTTCGGTTCCACAGGGTTTT 60.341 47.619 0.00 0.00 34.93 2.43
323 324 0.256464 TGTTCGGTTCCACAGGGTTT 59.744 50.000 0.00 0.00 34.93 3.27
324 325 0.256464 TTGTTCGGTTCCACAGGGTT 59.744 50.000 0.00 0.00 34.93 4.11
325 326 0.179029 CTTGTTCGGTTCCACAGGGT 60.179 55.000 0.00 0.00 34.93 4.34
326 327 0.107831 TCTTGTTCGGTTCCACAGGG 59.892 55.000 0.00 0.00 0.00 4.45
327 328 1.226746 GTCTTGTTCGGTTCCACAGG 58.773 55.000 0.00 0.00 0.00 4.00
328 329 1.202651 AGGTCTTGTTCGGTTCCACAG 60.203 52.381 0.00 0.00 0.00 3.66
329 330 0.834612 AGGTCTTGTTCGGTTCCACA 59.165 50.000 0.00 0.00 0.00 4.17
330 331 1.963172 AAGGTCTTGTTCGGTTCCAC 58.037 50.000 0.00 0.00 0.00 4.02
331 332 2.038033 CCTAAGGTCTTGTTCGGTTCCA 59.962 50.000 0.00 0.00 0.00 3.53
332 333 2.614734 CCCTAAGGTCTTGTTCGGTTCC 60.615 54.545 0.00 0.00 0.00 3.62
333 334 2.301009 TCCCTAAGGTCTTGTTCGGTTC 59.699 50.000 0.00 0.00 0.00 3.62
334 335 2.332117 TCCCTAAGGTCTTGTTCGGTT 58.668 47.619 0.00 0.00 0.00 4.44
335 336 2.019807 TCCCTAAGGTCTTGTTCGGT 57.980 50.000 0.00 0.00 0.00 4.69
336 337 3.532542 GAATCCCTAAGGTCTTGTTCGG 58.467 50.000 0.00 0.00 0.00 4.30
337 338 3.532542 GGAATCCCTAAGGTCTTGTTCG 58.467 50.000 0.00 0.00 0.00 3.95
338 339 3.055312 ACGGAATCCCTAAGGTCTTGTTC 60.055 47.826 0.00 0.00 0.00 3.18
339 340 2.910977 ACGGAATCCCTAAGGTCTTGTT 59.089 45.455 0.00 0.00 0.00 2.83
340 341 2.547990 ACGGAATCCCTAAGGTCTTGT 58.452 47.619 0.00 0.00 0.00 3.16
341 342 3.181468 GGTACGGAATCCCTAAGGTCTTG 60.181 52.174 0.00 0.00 0.00 3.02
342 343 3.036819 GGTACGGAATCCCTAAGGTCTT 58.963 50.000 0.00 0.00 0.00 3.01
343 344 2.675583 GGTACGGAATCCCTAAGGTCT 58.324 52.381 0.00 0.00 0.00 3.85
359 360 7.484959 GGTGATTTCATTTCATTTTCTCGGTAC 59.515 37.037 0.00 0.00 0.00 3.34
366 367 6.700352 TCCAGGGTGATTTCATTTCATTTTC 58.300 36.000 0.00 0.00 0.00 2.29
406 407 1.003118 TGGAGTGGATTTGAAGACCGG 59.997 52.381 0.00 0.00 0.00 5.28
413 414 0.323629 GGACCGTGGAGTGGATTTGA 59.676 55.000 0.00 0.00 0.00 2.69
478 479 1.135632 GTTTGCCGGCGCTGTATAAAA 60.136 47.619 23.90 11.19 35.36 1.52
479 480 0.448593 GTTTGCCGGCGCTGTATAAA 59.551 50.000 23.90 12.00 35.36 1.40
647 648 1.047596 GGCATGGAGGCTCAGAGAGA 61.048 60.000 17.69 0.00 40.24 3.10
932 939 0.098728 GCGCTGCGAAACCATACATT 59.901 50.000 28.07 0.00 0.00 2.71
1044 1051 6.096001 ACAGAACAATCCAGGAAATATGAAGC 59.904 38.462 0.00 0.00 0.00 3.86
1168 1175 0.453390 CAGCCCGAGAGAAAAATGGC 59.547 55.000 0.00 0.00 39.17 4.40
1240 1247 4.820894 ACTATGGAACCCAAGTACACTC 57.179 45.455 0.00 0.00 36.95 3.51
1335 1343 2.593725 CGATGCAGCCTCCATGGG 60.594 66.667 13.02 2.26 36.00 4.00
1345 1353 1.922903 CAGCTAGAACGCGATGCAG 59.077 57.895 15.93 5.60 34.40 4.41
1346 1354 2.167219 GCAGCTAGAACGCGATGCA 61.167 57.895 15.93 0.00 33.02 3.96
1375 1383 1.308069 CCGGCAGTTGTTCTCATGGG 61.308 60.000 0.00 0.00 0.00 4.00
1383 1391 1.298859 GAATCGAGCCGGCAGTTGTT 61.299 55.000 31.54 16.24 0.00 2.83
1509 1517 4.113815 TCGGGAAGGCCATGCAGG 62.114 66.667 5.01 0.00 41.84 4.85
1557 1565 3.593096 TCGACTAGATGTGTACGACAGT 58.407 45.455 0.00 0.00 38.23 3.55
1713 1721 4.075682 CGCTCTCCAGTATGATCCTAAGA 58.924 47.826 0.00 0.00 39.69 2.10
1758 1766 3.132925 GTGCAAAAACACCATGCTCAAT 58.867 40.909 0.00 0.00 40.66 2.57
1958 1966 3.067742 CAGCTCCATTATTTTCTGGGCTG 59.932 47.826 13.69 13.69 43.66 4.85
2377 2385 5.641209 CACTAGGAACAAGATTTCCACTGAG 59.359 44.000 4.76 0.00 46.76 3.35
2502 2510 7.378995 GCATTAATCACATCTGAAGCAGAAATC 59.621 37.037 0.78 0.00 44.04 2.17
2529 2537 2.359981 ACCATCCCATCTGAATGCAG 57.640 50.000 0.00 0.00 43.67 4.41
2557 2565 5.837770 AAAGCATCCAGGATATCATGAGA 57.162 39.130 18.64 13.60 0.00 3.27
2644 2652 9.369904 CAAATTGAATTCTTCGGGTTTATGATT 57.630 29.630 7.05 0.00 0.00 2.57
2646 2654 6.811170 GCAAATTGAATTCTTCGGGTTTATGA 59.189 34.615 7.05 0.00 0.00 2.15
2669 2677 4.890158 TTCTGTATCTGTTGGAGAAGCA 57.110 40.909 0.00 0.00 33.12 3.91
2700 2708 3.214328 AGTATGAAATTCCGCCATGGTC 58.786 45.455 14.67 4.79 39.52 4.02
2963 2971 6.037786 ACGAATATCCACACAGTATATGGG 57.962 41.667 0.00 0.00 38.76 4.00
3066 3074 1.542492 AGCAGTCAAGCAAATCCCTG 58.458 50.000 0.00 0.00 36.85 4.45
3093 3101 4.870021 ATAGCCACCTTTGAGGAAATCT 57.130 40.909 0.07 0.00 37.67 2.40
3200 3208 3.812053 CCTATACAGATTCTTGTGCAGCC 59.188 47.826 0.00 0.00 32.56 4.85
3524 3646 1.000896 AACATACTGGGCAGTGGGC 60.001 57.895 0.00 0.00 42.52 5.36
3525 3647 0.620556 AGAACATACTGGGCAGTGGG 59.379 55.000 0.00 0.00 42.52 4.61
3526 3648 3.845781 ATAGAACATACTGGGCAGTGG 57.154 47.619 0.00 0.00 42.52 4.00
3527 3649 4.769688 TGAATAGAACATACTGGGCAGTG 58.230 43.478 0.00 0.00 42.52 3.66
3528 3650 5.104360 ACATGAATAGAACATACTGGGCAGT 60.104 40.000 0.00 0.00 45.02 4.40
3529 3651 5.371526 ACATGAATAGAACATACTGGGCAG 58.628 41.667 0.00 0.00 0.00 4.85
3564 3686 6.071221 AGTGATAACCATGCATCAACACAATT 60.071 34.615 0.00 0.00 33.15 2.32
3628 3752 7.623268 TCGAGATATCGTACAAATTCATGTG 57.377 36.000 9.90 0.00 34.75 3.21
3629 3753 8.818141 ATTCGAGATATCGTACAAATTCATGT 57.182 30.769 9.90 0.00 37.32 3.21
3754 3878 5.099042 TGTAACTAAGAGGCTGGAAATCC 57.901 43.478 0.00 0.00 0.00 3.01
3882 4018 2.045536 CAGAGCTCTTGCCACCCC 60.046 66.667 15.27 0.00 40.80 4.95
3942 4086 9.689976 CTTACTAAGATCTGAACATATGTCAGG 57.310 37.037 23.44 14.55 32.76 3.86
4029 4189 4.201881 GCAAAACTACACCTGAAACTCGTT 60.202 41.667 0.00 0.00 0.00 3.85
4066 4226 1.621992 TAAATTCCACAAGGCCGCAA 58.378 45.000 0.00 0.00 33.74 4.85
4166 4336 4.024048 CCAGGTGCATATTTTCGGTACATC 60.024 45.833 0.00 0.00 0.00 3.06
4176 4346 2.621556 ACCAACCCAGGTGCATATTT 57.378 45.000 0.00 0.00 41.30 1.40
4265 4435 1.336148 GCATACAGCAGCAGCAACAAA 60.336 47.619 3.17 0.00 45.49 2.83
4281 4451 0.037590 AACCCGCCAGTTCAAGCATA 59.962 50.000 0.00 0.00 0.00 3.14
4282 4452 1.228552 AACCCGCCAGTTCAAGCAT 60.229 52.632 0.00 0.00 0.00 3.79
4316 4497 6.654582 GGGGTGAACTTTTGCAAATGATAAAT 59.345 34.615 26.53 10.48 0.00 1.40
4320 4503 3.554752 CGGGGTGAACTTTTGCAAATGAT 60.555 43.478 26.53 17.57 0.00 2.45
4346 4529 1.971357 CATCCGTGGTATTCTAGGGCT 59.029 52.381 0.00 0.00 31.61 5.19
4348 4531 2.963101 TGACATCCGTGGTATTCTAGGG 59.037 50.000 0.00 0.00 0.00 3.53
4412 4624 9.965902 AATGGTACTAAGATCTGAGTTCATTTT 57.034 29.630 22.91 12.19 30.79 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.