Multiple sequence alignment - TraesCS2A01G353300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G353300 chr2A 100.000 8395 0 0 1 8395 593660547 593652153 0.000000e+00 15503.0
1 TraesCS2A01G353300 chr2A 94.041 537 25 1 7866 8395 735968972 735969508 0.000000e+00 808.0
2 TraesCS2A01G353300 chr2A 95.604 91 3 1 4548 4638 376082428 376082517 2.440000e-30 145.0
3 TraesCS2A01G353300 chr2A 95.506 89 3 1 4551 4639 4969449 4969536 3.160000e-29 141.0
4 TraesCS2A01G353300 chr2A 90.588 85 7 1 4637 4720 28816475 28816559 2.480000e-20 111.0
5 TraesCS2A01G353300 chr2A 89.535 86 7 2 4637 4721 182008966 182009050 3.200000e-19 108.0
6 TraesCS2A01G353300 chr2D 94.230 7400 259 72 392 7709 449061370 449068683 0.000000e+00 11145.0
7 TraesCS2A01G353300 chr2D 89.820 334 23 3 4 336 449061049 449061372 1.300000e-112 418.0
8 TraesCS2A01G353300 chr2D 96.522 115 4 0 1809 1923 175749604 175749490 3.090000e-44 191.0
9 TraesCS2A01G353300 chr2D 95.652 115 5 0 1809 1923 174944259 174944373 1.440000e-42 185.0
10 TraesCS2A01G353300 chr2D 94.624 93 3 2 4551 4643 557267179 557267269 8.780000e-30 143.0
11 TraesCS2A01G353300 chr2B 94.098 7048 230 74 901 7843 529269060 529262094 0.000000e+00 10539.0
12 TraesCS2A01G353300 chr2B 89.713 661 51 12 4 660 529293068 529292421 0.000000e+00 828.0
13 TraesCS2A01G353300 chr2B 92.655 531 37 2 7865 8395 672815487 672814959 0.000000e+00 763.0
14 TraesCS2A01G353300 chr1D 94.371 1581 62 16 1814 3387 455902603 455904163 0.000000e+00 2401.0
15 TraesCS2A01G353300 chr1D 96.522 115 4 0 1809 1923 212085338 212085452 3.090000e-44 191.0
16 TraesCS2A01G353300 chr1D 87.640 89 9 2 4638 4724 201495069 201494981 1.490000e-17 102.0
17 TraesCS2A01G353300 chr3B 92.844 531 36 2 7866 8395 96831387 96830858 0.000000e+00 769.0
18 TraesCS2A01G353300 chr3B 92.467 531 39 1 7865 8395 457157483 457158012 0.000000e+00 758.0
19 TraesCS2A01G353300 chr3B 92.105 532 41 1 7865 8395 685399621 685399090 0.000000e+00 749.0
20 TraesCS2A01G353300 chr3B 96.703 91 2 1 4550 4640 680423294 680423383 5.250000e-32 150.0
21 TraesCS2A01G353300 chr3B 96.629 89 2 1 4553 4641 126580150 126580063 6.790000e-31 147.0
22 TraesCS2A01G353300 chr3B 87.356 87 9 2 4636 4721 43734967 43734882 1.930000e-16 99.0
23 TraesCS2A01G353300 chr7A 93.282 521 29 2 7875 8395 100549325 100549839 0.000000e+00 763.0
24 TraesCS2A01G353300 chr7A 93.281 506 27 5 2495 2997 299566580 299566079 0.000000e+00 739.0
25 TraesCS2A01G353300 chr7A 96.599 147 5 0 2295 2441 299566730 299566584 2.340000e-60 244.0
26 TraesCS2A01G353300 chr7A 95.604 91 2 2 4551 4640 398924428 398924517 2.440000e-30 145.0
27 TraesCS2A01G353300 chr7A 76.296 135 26 5 3497 3628 466521863 466521732 5.440000e-07 67.6
28 TraesCS2A01G353300 chr6B 91.714 531 43 1 7866 8395 278544780 278544250 0.000000e+00 736.0
29 TraesCS2A01G353300 chr5B 91.892 518 39 3 7879 8395 398441620 398441105 0.000000e+00 721.0
30 TraesCS2A01G353300 chr5B 91.461 527 42 3 7871 8395 404194173 404194698 0.000000e+00 721.0
31 TraesCS2A01G353300 chr5B 91.000 100 6 2 7545 7644 692478345 692478441 1.900000e-26 132.0
32 TraesCS2A01G353300 chr5A 91.337 531 41 5 7866 8395 239404558 239404032 0.000000e+00 721.0
33 TraesCS2A01G353300 chr7D 96.522 115 4 0 1809 1923 50399127 50399241 3.090000e-44 191.0
34 TraesCS2A01G353300 chr7D 92.683 82 5 1 4828 4909 5282695 5282615 5.320000e-22 117.0
35 TraesCS2A01G353300 chr6D 96.522 115 4 0 1809 1923 379509936 379509822 3.090000e-44 191.0
36 TraesCS2A01G353300 chr6D 95.652 115 5 0 1809 1923 21112668 21112554 1.440000e-42 185.0
37 TraesCS2A01G353300 chr4A 95.652 92 2 2 4549 4640 590111543 590111632 6.790000e-31 147.0
38 TraesCS2A01G353300 chr4A 92.632 95 4 2 7543 7636 619145301 619145393 5.290000e-27 134.0
39 TraesCS2A01G353300 chr4A 89.412 85 8 1 4638 4721 570973516 570973600 1.150000e-18 106.0
40 TraesCS2A01G353300 chr5D 94.444 90 2 2 7547 7636 548878080 548877994 1.470000e-27 135.0
41 TraesCS2A01G353300 chr5D 90.909 99 6 2 7544 7642 548319385 548319480 6.840000e-26 130.0
42 TraesCS2A01G353300 chr3D 92.632 95 3 3 7550 7643 511352631 511352722 5.290000e-27 134.0
43 TraesCS2A01G353300 chr3D 90.698 86 7 1 4638 4722 373324973 373325058 6.890000e-21 113.0
44 TraesCS2A01G353300 chr6A 86.400 125 10 6 7513 7636 602133611 602133493 6.840000e-26 130.0
45 TraesCS2A01G353300 chr4D 91.000 100 4 3 7545 7642 109245256 109245160 6.840000e-26 130.0
46 TraesCS2A01G353300 chr4D 89.412 85 7 1 4643 4725 381882675 381882591 1.150000e-18 106.0
47 TraesCS2A01G353300 chr1B 88.172 93 9 2 4638 4728 289087293 289087385 8.910000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G353300 chr2A 593652153 593660547 8394 True 15503.0 15503 100.000 1 8395 1 chr2A.!!$R1 8394
1 TraesCS2A01G353300 chr2A 735968972 735969508 536 False 808.0 808 94.041 7866 8395 1 chr2A.!!$F5 529
2 TraesCS2A01G353300 chr2D 449061049 449068683 7634 False 5781.5 11145 92.025 4 7709 2 chr2D.!!$F3 7705
3 TraesCS2A01G353300 chr2B 529262094 529269060 6966 True 10539.0 10539 94.098 901 7843 1 chr2B.!!$R1 6942
4 TraesCS2A01G353300 chr2B 529292421 529293068 647 True 828.0 828 89.713 4 660 1 chr2B.!!$R2 656
5 TraesCS2A01G353300 chr2B 672814959 672815487 528 True 763.0 763 92.655 7865 8395 1 chr2B.!!$R3 530
6 TraesCS2A01G353300 chr1D 455902603 455904163 1560 False 2401.0 2401 94.371 1814 3387 1 chr1D.!!$F2 1573
7 TraesCS2A01G353300 chr3B 96830858 96831387 529 True 769.0 769 92.844 7866 8395 1 chr3B.!!$R2 529
8 TraesCS2A01G353300 chr3B 457157483 457158012 529 False 758.0 758 92.467 7865 8395 1 chr3B.!!$F1 530
9 TraesCS2A01G353300 chr3B 685399090 685399621 531 True 749.0 749 92.105 7865 8395 1 chr3B.!!$R4 530
10 TraesCS2A01G353300 chr7A 100549325 100549839 514 False 763.0 763 93.282 7875 8395 1 chr7A.!!$F1 520
11 TraesCS2A01G353300 chr7A 299566079 299566730 651 True 491.5 739 94.940 2295 2997 2 chr7A.!!$R2 702
12 TraesCS2A01G353300 chr6B 278544250 278544780 530 True 736.0 736 91.714 7866 8395 1 chr6B.!!$R1 529
13 TraesCS2A01G353300 chr5B 398441105 398441620 515 True 721.0 721 91.892 7879 8395 1 chr5B.!!$R1 516
14 TraesCS2A01G353300 chr5B 404194173 404194698 525 False 721.0 721 91.461 7871 8395 1 chr5B.!!$F1 524
15 TraesCS2A01G353300 chr5A 239404032 239404558 526 True 721.0 721 91.337 7866 8395 1 chr5A.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 819 0.317160 AGTTGGTTCATCTCGCGACA 59.683 50.000 3.71 0.00 0.00 4.35 F
1125 1190 0.034380 ACGAGACCAGAATCTCCGGA 60.034 55.000 2.93 2.93 41.92 5.14 F
2170 2242 0.248843 GCTGAGTCAGAGGTGGAAGG 59.751 60.000 24.55 0.00 32.44 3.46 F
2520 2592 1.678635 TGGCATGTGGCACCTTAGC 60.679 57.895 16.26 13.02 46.12 3.09 F
3994 4074 1.275573 ACGGCTGAGGAGGTAAGTTTC 59.724 52.381 0.00 0.00 0.00 2.78 F
5515 5618 2.039348 ACTATTGGTTGTACGCAGGGTT 59.961 45.455 0.00 0.00 0.00 4.11 F
6597 6719 0.438830 GAGCCGTAACTGAGCAAACG 59.561 55.000 0.00 0.00 35.20 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 2039 0.463474 GACCCCAGAATGCAGCTCTC 60.463 60.000 0.00 0.0 31.97 3.20 R
2637 2709 2.237392 AGGGTAGCTAGAAGGCTGTTTG 59.763 50.000 0.00 0.0 43.01 2.93 R
3994 4074 3.876320 GCCTCAGCTTTTGGAGATAGAAG 59.124 47.826 0.48 0.0 35.50 2.85 R
4180 4261 1.093159 GCTGTCTCTGCCAGAAATGG 58.907 55.000 0.00 0.0 30.72 3.16 R
5753 5856 2.270352 ACGAAAAGGGCACATCAAGA 57.730 45.000 0.00 0.0 0.00 3.02 R
7094 7230 0.531532 CCAGCCTTGATACCTCAGCG 60.532 60.000 0.00 0.0 31.68 5.18 R
7701 7905 0.321298 AGGATTTGTAACGCCGTGCT 60.321 50.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 27 7.817418 AGAAAAGCACTAACAAACCTAATCA 57.183 32.000 0.00 0.00 0.00 2.57
50 53 7.176515 ACCATATTCAGAACATGCAAAACTACA 59.823 33.333 0.00 0.00 0.00 2.74
51 54 8.028354 CCATATTCAGAACATGCAAAACTACAA 58.972 33.333 0.00 0.00 0.00 2.41
151 154 7.923414 AACCAGTAGAATCCAACAATCTTAC 57.077 36.000 0.00 0.00 0.00 2.34
157 160 4.045334 AGAATCCAACAATCTTACCCCCAA 59.955 41.667 0.00 0.00 0.00 4.12
223 226 1.459592 CCGTTCAACAGCTAAGAACCG 59.540 52.381 15.35 11.63 38.67 4.44
251 262 1.415659 CAAACAATCCCAACCCAAGCA 59.584 47.619 0.00 0.00 0.00 3.91
254 265 1.180029 CAATCCCAACCCAAGCAGAG 58.820 55.000 0.00 0.00 0.00 3.35
255 266 0.613012 AATCCCAACCCAAGCAGAGC 60.613 55.000 0.00 0.00 0.00 4.09
256 267 1.504275 ATCCCAACCCAAGCAGAGCT 61.504 55.000 0.00 0.00 42.56 4.09
257 268 1.975407 CCCAACCCAAGCAGAGCTG 60.975 63.158 0.00 0.00 39.62 4.24
278 289 1.080025 GAGGAGAACCACCCGAACG 60.080 63.158 0.00 0.00 38.94 3.95
293 304 1.135460 CGAACGAAGACCCCTCTGTAC 60.135 57.143 0.00 0.00 0.00 2.90
318 330 3.937814 TCGCCTGAAACAATGTGATAGT 58.062 40.909 0.00 0.00 0.00 2.12
321 333 5.935206 TCGCCTGAAACAATGTGATAGTAAA 59.065 36.000 0.00 0.00 0.00 2.01
336 396 3.334583 AGTAAAGGTCGCATCACACAT 57.665 42.857 0.00 0.00 0.00 3.21
337 397 3.002791 AGTAAAGGTCGCATCACACATG 58.997 45.455 0.00 0.00 0.00 3.21
338 398 2.183478 AAAGGTCGCATCACACATGA 57.817 45.000 0.00 0.00 39.83 3.07
339 399 2.183478 AAGGTCGCATCACACATGAA 57.817 45.000 0.00 0.00 38.69 2.57
340 400 1.442769 AGGTCGCATCACACATGAAC 58.557 50.000 0.00 0.00 38.69 3.18
342 402 1.135972 GGTCGCATCACACATGAACAC 60.136 52.381 0.00 0.00 38.69 3.32
343 403 1.135972 GTCGCATCACACATGAACACC 60.136 52.381 0.00 0.00 38.69 4.16
344 404 1.159285 CGCATCACACATGAACACCT 58.841 50.000 0.00 0.00 38.69 4.00
345 405 2.028567 TCGCATCACACATGAACACCTA 60.029 45.455 0.00 0.00 38.69 3.08
346 406 2.094258 CGCATCACACATGAACACCTAC 59.906 50.000 0.00 0.00 38.69 3.18
347 407 2.420022 GCATCACACATGAACACCTACC 59.580 50.000 0.00 0.00 38.69 3.18
348 408 3.673902 CATCACACATGAACACCTACCA 58.326 45.455 0.00 0.00 38.69 3.25
349 409 3.847671 TCACACATGAACACCTACCAA 57.152 42.857 0.00 0.00 0.00 3.67
350 410 4.365514 TCACACATGAACACCTACCAAT 57.634 40.909 0.00 0.00 0.00 3.16
351 411 4.323417 TCACACATGAACACCTACCAATC 58.677 43.478 0.00 0.00 0.00 2.67
352 412 3.440173 CACACATGAACACCTACCAATCC 59.560 47.826 0.00 0.00 0.00 3.01
353 413 3.330701 ACACATGAACACCTACCAATCCT 59.669 43.478 0.00 0.00 0.00 3.24
354 414 4.534500 ACACATGAACACCTACCAATCCTA 59.466 41.667 0.00 0.00 0.00 2.94
355 415 5.118990 CACATGAACACCTACCAATCCTAG 58.881 45.833 0.00 0.00 0.00 3.02
356 416 4.164221 ACATGAACACCTACCAATCCTAGG 59.836 45.833 0.82 0.82 37.40 3.02
357 417 4.069312 TGAACACCTACCAATCCTAGGA 57.931 45.455 15.46 15.46 35.23 2.94
358 418 4.431378 TGAACACCTACCAATCCTAGGAA 58.569 43.478 17.30 0.00 35.23 3.36
359 419 5.036916 TGAACACCTACCAATCCTAGGAAT 58.963 41.667 17.30 3.99 35.23 3.01
360 420 5.491078 TGAACACCTACCAATCCTAGGAATT 59.509 40.000 17.30 8.04 35.23 2.17
361 421 5.373812 ACACCTACCAATCCTAGGAATTG 57.626 43.478 17.30 18.59 35.23 2.32
363 423 3.722101 ACCTACCAATCCTAGGAATTGGG 59.278 47.826 33.40 25.90 46.71 4.12
364 424 3.722101 CCTACCAATCCTAGGAATTGGGT 59.278 47.826 33.40 28.55 46.71 4.51
365 425 3.669939 ACCAATCCTAGGAATTGGGTG 57.330 47.619 33.40 20.81 46.71 4.61
366 426 2.926329 ACCAATCCTAGGAATTGGGTGT 59.074 45.455 33.40 21.61 46.71 4.16
367 427 3.290710 CCAATCCTAGGAATTGGGTGTG 58.709 50.000 28.34 14.10 40.71 3.82
368 428 3.309121 CCAATCCTAGGAATTGGGTGTGT 60.309 47.826 28.34 6.70 40.71 3.72
369 429 3.652057 ATCCTAGGAATTGGGTGTGTG 57.348 47.619 17.30 0.00 0.00 3.82
370 430 2.344592 TCCTAGGAATTGGGTGTGTGT 58.655 47.619 9.71 0.00 0.00 3.72
371 431 2.039746 TCCTAGGAATTGGGTGTGTGTG 59.960 50.000 9.71 0.00 0.00 3.82
372 432 2.224769 CCTAGGAATTGGGTGTGTGTGT 60.225 50.000 1.05 0.00 0.00 3.72
373 433 1.691196 AGGAATTGGGTGTGTGTGTG 58.309 50.000 0.00 0.00 0.00 3.82
374 434 1.064017 AGGAATTGGGTGTGTGTGTGT 60.064 47.619 0.00 0.00 0.00 3.72
375 435 1.066908 GGAATTGGGTGTGTGTGTGTG 59.933 52.381 0.00 0.00 0.00 3.82
376 436 1.066908 GAATTGGGTGTGTGTGTGTGG 59.933 52.381 0.00 0.00 0.00 4.17
377 437 0.754957 ATTGGGTGTGTGTGTGTGGG 60.755 55.000 0.00 0.00 0.00 4.61
378 438 2.518349 GGGTGTGTGTGTGTGGGG 60.518 66.667 0.00 0.00 0.00 4.96
379 439 2.518349 GGTGTGTGTGTGTGGGGG 60.518 66.667 0.00 0.00 0.00 5.40
398 458 3.757836 GGGGGAGCTAAACAAACCA 57.242 52.632 0.00 0.00 0.00 3.67
399 459 2.003937 GGGGGAGCTAAACAAACCAA 57.996 50.000 0.00 0.00 0.00 3.67
400 460 2.321719 GGGGGAGCTAAACAAACCAAA 58.678 47.619 0.00 0.00 0.00 3.28
401 461 2.701423 GGGGGAGCTAAACAAACCAAAA 59.299 45.455 0.00 0.00 0.00 2.44
402 462 3.134985 GGGGGAGCTAAACAAACCAAAAA 59.865 43.478 0.00 0.00 0.00 1.94
449 509 0.885879 CAATTCAGGAGCAGCAGCAA 59.114 50.000 3.17 0.00 45.49 3.91
487 547 1.878948 GCTAACAAACCGCTACACCCA 60.879 52.381 0.00 0.00 0.00 4.51
505 565 1.135689 CCAACATGACTTTACGCTGGC 60.136 52.381 0.00 0.00 0.00 4.85
507 567 1.890876 ACATGACTTTACGCTGGCAA 58.109 45.000 0.00 0.00 0.00 4.52
509 569 2.621055 ACATGACTTTACGCTGGCAAAA 59.379 40.909 0.00 0.00 0.00 2.44
544 605 3.210227 TCACCATGCAAAAAGAACGAGA 58.790 40.909 0.00 0.00 0.00 4.04
595 656 5.360591 ACCTCTCCATGTAGCTTTATTTCG 58.639 41.667 0.00 0.00 0.00 3.46
607 668 6.154451 AGCTTTATTTCGTTCTCTTCGAAC 57.846 37.500 0.00 0.00 44.87 3.95
699 760 4.781934 AGACAACCAATAATAGGTGGCTC 58.218 43.478 0.00 0.00 39.86 4.70
700 761 4.227300 AGACAACCAATAATAGGTGGCTCA 59.773 41.667 0.00 0.00 39.86 4.26
703 764 4.796110 ACCAATAATAGGTGGCTCACAT 57.204 40.909 7.49 3.21 38.13 3.21
704 765 4.464008 ACCAATAATAGGTGGCTCACATG 58.536 43.478 7.49 0.00 38.13 3.21
728 789 5.429957 AATCCGATAAGAAAAGCATGCTC 57.570 39.130 22.93 9.19 0.00 4.26
729 790 3.872696 TCCGATAAGAAAAGCATGCTCA 58.127 40.909 22.93 2.62 0.00 4.26
736 798 7.062605 CGATAAGAAAAGCATGCTCAAAATGTT 59.937 33.333 22.93 6.70 0.00 2.71
738 800 9.709495 ATAAGAAAAGCATGCTCAAAATGTTAA 57.291 25.926 22.93 0.40 0.00 2.01
750 812 7.147976 GCTCAAAATGTTAAGTTGGTTCATCT 58.852 34.615 0.00 0.00 0.00 2.90
753 815 4.946784 ATGTTAAGTTGGTTCATCTCGC 57.053 40.909 0.00 0.00 0.00 5.03
755 817 2.991190 GTTAAGTTGGTTCATCTCGCGA 59.009 45.455 9.26 9.26 0.00 5.87
757 819 0.317160 AGTTGGTTCATCTCGCGACA 59.683 50.000 3.71 0.00 0.00 4.35
762 824 2.066262 GGTTCATCTCGCGACAGAAAA 58.934 47.619 3.71 0.00 0.00 2.29
767 829 3.918591 TCATCTCGCGACAGAAAAGTAAC 59.081 43.478 3.71 0.00 0.00 2.50
769 831 3.047796 TCTCGCGACAGAAAAGTAACAC 58.952 45.455 3.71 0.00 0.00 3.32
770 832 2.792674 CTCGCGACAGAAAAGTAACACA 59.207 45.455 3.71 0.00 0.00 3.72
787 849 0.378257 ACAAATCGTGGCGCATCATC 59.622 50.000 10.83 0.00 0.00 2.92
792 854 2.528743 CGTGGCGCATCATCAGACC 61.529 63.158 10.83 0.00 0.00 3.85
793 855 1.450134 GTGGCGCATCATCAGACCA 60.450 57.895 10.83 0.00 0.00 4.02
804 866 6.400303 CGCATCATCAGACCAAAATTTTGAAC 60.400 38.462 28.44 20.71 40.55 3.18
809 871 7.434897 TCATCAGACCAAAATTTTGAACGAAAG 59.565 33.333 28.44 14.18 40.55 2.62
811 873 6.750039 TCAGACCAAAATTTTGAACGAAAGAC 59.250 34.615 28.44 12.28 40.55 3.01
826 889 5.685841 ACGAAAGACATTACATTTCAACCG 58.314 37.500 0.00 0.00 33.50 4.44
835 898 7.213678 ACATTACATTTCAACCGGACAAAAAT 58.786 30.769 9.46 5.75 0.00 1.82
837 900 5.017294 ACATTTCAACCGGACAAAAATGT 57.983 34.783 23.40 23.40 42.59 2.71
843 906 3.467374 ACCGGACAAAAATGTGCAAAT 57.533 38.095 9.46 0.00 0.00 2.32
849 912 4.272261 GGACAAAAATGTGCAAATCCGTTT 59.728 37.500 0.00 0.00 0.00 3.60
852 915 7.308782 ACAAAAATGTGCAAATCCGTTTAAA 57.691 28.000 0.00 0.00 0.00 1.52
856 919 9.794685 AAAAATGTGCAAATCCGTTTAAATTTT 57.205 22.222 0.00 0.00 0.00 1.82
857 920 9.444534 AAAATGTGCAAATCCGTTTAAATTTTC 57.555 25.926 0.00 0.00 0.00 2.29
858 921 7.721286 ATGTGCAAATCCGTTTAAATTTTCA 57.279 28.000 0.00 0.00 0.00 2.69
899 962 3.892588 CTCTCGGGATAGCTTTAGAGGTT 59.107 47.826 0.00 0.00 34.88 3.50
1125 1190 0.034380 ACGAGACCAGAATCTCCGGA 60.034 55.000 2.93 2.93 41.92 5.14
1358 1424 2.977405 AATCAGAGAAACTTGCGTGC 57.023 45.000 0.00 0.00 0.00 5.34
1365 1431 3.483235 AAACTTGCGTGCGGCCTTG 62.483 57.895 0.00 0.00 42.61 3.61
1376 1442 2.751436 GGCCTTGCTGCAATCCGA 60.751 61.111 16.38 0.00 0.00 4.55
1398 1469 2.409570 AGGCCCCCTATTCACTAGTTC 58.590 52.381 0.00 0.00 28.47 3.01
1417 1488 9.696572 ACTAGTTCTGTATTTCCTGTGAGTATA 57.303 33.333 0.00 0.00 0.00 1.47
1428 1499 4.526650 TCCTGTGAGTATAAGCAAGTGTCA 59.473 41.667 0.00 0.00 0.00 3.58
1456 1527 2.440409 GATGTGAGGTGGTGCAAATCT 58.560 47.619 0.00 0.00 0.00 2.40
1469 1540 3.933332 GTGCAAATCTCAGTACCTGGTAC 59.067 47.826 25.98 25.98 39.10 3.34
1543 1614 7.759489 TTGTAACCAGTAAATTGATGCTTCT 57.241 32.000 0.88 0.00 0.00 2.85
1544 1615 7.759489 TGTAACCAGTAAATTGATGCTTCTT 57.241 32.000 0.88 0.00 0.00 2.52
1546 1617 8.637986 TGTAACCAGTAAATTGATGCTTCTTTT 58.362 29.630 0.88 4.28 0.00 2.27
1547 1618 9.476202 GTAACCAGTAAATTGATGCTTCTTTTT 57.524 29.630 0.88 3.97 0.00 1.94
1603 1674 3.044986 CAGTTTTGAATTCGTGCTGTGG 58.955 45.455 0.04 0.00 0.00 4.17
1608 1679 0.521735 GAATTCGTGCTGTGGGGTTC 59.478 55.000 0.00 0.00 0.00 3.62
1618 1689 1.255667 TGTGGGGTTCTCCGTAGAGC 61.256 60.000 0.00 0.00 40.22 4.09
1624 1695 1.945394 GGTTCTCCGTAGAGCGTATGA 59.055 52.381 0.00 0.00 40.22 2.15
1672 1743 2.489938 ATCCACCACTGTTGCGTTAT 57.510 45.000 0.00 0.00 0.00 1.89
1673 1744 3.620427 ATCCACCACTGTTGCGTTATA 57.380 42.857 0.00 0.00 0.00 0.98
1674 1745 2.967362 TCCACCACTGTTGCGTTATAG 58.033 47.619 0.00 0.00 0.00 1.31
1968 2039 2.044860 GACGCCACTATCTTCGATTCG 58.955 52.381 0.00 0.00 0.00 3.34
2170 2242 0.248843 GCTGAGTCAGAGGTGGAAGG 59.751 60.000 24.55 0.00 32.44 3.46
2379 2451 4.276926 GCTAGGCTTTCCAGATAACCATTG 59.723 45.833 0.00 0.00 33.74 2.82
2504 2576 5.009854 AGTTCGGGAAATTTATTGCATGG 57.990 39.130 0.00 0.00 0.00 3.66
2520 2592 1.678635 TGGCATGTGGCACCTTAGC 60.679 57.895 16.26 13.02 46.12 3.09
2637 2709 7.504238 TGAGTATCAGTTCTATCTTTCTCTCCC 59.496 40.741 0.00 0.00 42.56 4.30
2649 2721 1.734655 TCTCTCCCAAACAGCCTTCT 58.265 50.000 0.00 0.00 0.00 2.85
2804 2876 5.022227 AGGATGATCTCTATAGGGTTGCT 57.978 43.478 0.00 0.00 0.00 3.91
2889 2963 9.199982 AGCAAAAATGTTGATCAGAAACAATAG 57.800 29.630 2.95 0.00 40.69 1.73
3036 3110 2.575694 ACACGATGACTCAGAGATGC 57.424 50.000 3.79 0.00 0.00 3.91
3197 3275 7.714813 CCATAAACAACTTTGAAGAAACCCAAT 59.285 33.333 0.00 0.00 0.00 3.16
3258 3336 3.368495 GTCGTCGCATTTCCTTTTTGTT 58.632 40.909 0.00 0.00 0.00 2.83
3387 3466 6.426646 TGAGAATCTAATTTAGCTCCCCTC 57.573 41.667 0.00 0.00 34.92 4.30
3435 3515 6.234177 CCTTATTCTTTAGGCCTAGGTGATG 58.766 44.000 13.36 0.69 0.00 3.07
3439 3519 5.514500 TCTTTAGGCCTAGGTGATGTTTT 57.486 39.130 13.36 0.00 0.00 2.43
3557 3637 3.942829 TCAGCTAACCTGATTCCTTGTG 58.057 45.455 0.00 0.00 45.44 3.33
3994 4074 1.275573 ACGGCTGAGGAGGTAAGTTTC 59.724 52.381 0.00 0.00 0.00 2.78
4172 4253 9.220906 AGTGTGGAATTATAAAGGAGGTATACA 57.779 33.333 5.01 0.00 0.00 2.29
4270 4352 6.666113 TCCCATTCCTAAACTTGGTTTTATCC 59.334 38.462 0.99 0.00 37.01 2.59
4302 4384 3.079578 CACTCACAGATCCATGTTTGCT 58.920 45.455 0.00 0.00 0.00 3.91
4781 4870 8.007405 TCGTAATCAATATTCTGTTCCTGAGA 57.993 34.615 0.00 0.00 0.00 3.27
4810 4899 5.715070 AGTACTGAACTACTGATGCACTTC 58.285 41.667 0.00 0.00 36.36 3.01
5334 5437 2.223641 TGAATACGTGTACCCAGCGATC 60.224 50.000 0.00 0.00 0.00 3.69
5355 5458 5.173774 TCAGTTTCTGTTGCTTCAATGTC 57.826 39.130 0.00 0.00 32.61 3.06
5419 5522 5.628797 TCATGCTAATTAGGGATGTGTCA 57.371 39.130 14.28 1.59 34.79 3.58
5504 5607 7.656707 ATTAAGCTGCAAAAACTATTGGTTG 57.343 32.000 1.02 0.00 38.29 3.77
5515 5618 2.039348 ACTATTGGTTGTACGCAGGGTT 59.961 45.455 0.00 0.00 0.00 4.11
5517 5620 2.634815 TTGGTTGTACGCAGGGTTTA 57.365 45.000 0.00 0.00 0.00 2.01
5771 5878 3.855689 ATTCTTGATGTGCCCTTTTCG 57.144 42.857 0.00 0.00 0.00 3.46
5798 5905 6.227522 TGGAACAAATGAGTCGTTTCAGATA 58.772 36.000 7.38 0.00 31.92 1.98
5953 6060 2.858344 CCGATCGACAATGTCAAGGTAC 59.142 50.000 18.66 0.00 32.09 3.34
6052 6159 9.767684 GAAAAGGGAATGTTAAAAAGTTGTTTG 57.232 29.630 0.00 0.00 0.00 2.93
6082 6189 5.620738 AGCTGTGCTTCTTCCTAATCATA 57.379 39.130 0.00 0.00 33.89 2.15
6275 6383 2.188817 GGGTACTGGTCCTGTGAGAAT 58.811 52.381 11.49 0.00 0.00 2.40
6279 6387 2.050144 ACTGGTCCTGTGAGAATGTGT 58.950 47.619 0.00 0.00 0.00 3.72
6280 6388 2.439507 ACTGGTCCTGTGAGAATGTGTT 59.560 45.455 0.00 0.00 0.00 3.32
6281 6389 3.646162 ACTGGTCCTGTGAGAATGTGTTA 59.354 43.478 0.00 0.00 0.00 2.41
6282 6390 3.997021 CTGGTCCTGTGAGAATGTGTTAC 59.003 47.826 0.00 0.00 0.00 2.50
6543 6665 6.781138 TGAACTAGTGTTAAGCTTTGTTGTG 58.219 36.000 3.20 0.00 36.39 3.33
6548 6670 9.284968 ACTAGTGTTAAGCTTTGTTGTGATTAT 57.715 29.630 3.20 0.00 0.00 1.28
6597 6719 0.438830 GAGCCGTAACTGAGCAAACG 59.561 55.000 0.00 0.00 35.20 3.60
6779 6908 6.373216 TGAATGGAAGATGGTAGGTTTTAACG 59.627 38.462 0.00 0.00 0.00 3.18
6795 6924 2.999507 AACGTAAAATCATTGCGCCA 57.000 40.000 4.18 0.00 0.00 5.69
6821 6950 9.933723 ATTCTTTTCCTCTTGGTTTTTGATATG 57.066 29.630 0.00 0.00 34.23 1.78
6898 7032 2.475111 TGCGAGATTCGTTTCAAGTGTC 59.525 45.455 0.17 0.00 42.81 3.67
6905 7039 7.083875 AGATTCGTTTCAAGTGTCAGAAAAA 57.916 32.000 0.00 0.00 35.71 1.94
6939 7073 4.199310 TGTGAACACTTTGGAGAAAGGAG 58.801 43.478 6.51 0.00 42.66 3.69
6940 7074 3.565902 GTGAACACTTTGGAGAAAGGAGG 59.434 47.826 0.00 0.00 42.66 4.30
6941 7075 2.959465 ACACTTTGGAGAAAGGAGGG 57.041 50.000 0.00 0.00 42.66 4.30
6942 7076 2.418669 ACACTTTGGAGAAAGGAGGGA 58.581 47.619 0.00 0.00 42.66 4.20
7014 7150 7.907841 AAGGGTTTTTAACTACATTCCTTGT 57.092 32.000 0.00 0.00 42.62 3.16
7017 7153 5.854866 GGTTTTTAACTACATTCCTTGTCGC 59.145 40.000 0.00 0.00 39.87 5.19
7103 7239 1.081892 GTGACTACGACGCTGAGGTA 58.918 55.000 0.00 0.00 0.00 3.08
7142 7278 5.832539 TTGGAGAAGAGTTGGAAGAATCT 57.167 39.130 0.00 0.00 0.00 2.40
7218 7354 4.967575 AGCGTGAAATTTACAAGAACAACG 59.032 37.500 0.00 0.00 0.00 4.10
7240 7376 0.892814 ACAGAAAAGAGCAGCTGGGC 60.893 55.000 17.12 0.95 32.82 5.36
7249 7385 1.980772 GCAGCTGGGCCATCTGTTT 60.981 57.895 31.52 0.09 31.24 2.83
7265 7401 7.094634 GCCATCTGTTTGTCCGATTATTCATAT 60.095 37.037 0.00 0.00 0.00 1.78
7319 7455 4.201589 CGGAGTTGTTACATCAGCTAAACG 60.202 45.833 0.00 0.00 0.00 3.60
7330 7466 6.636705 ACATCAGCTAAACGTTGTCCTAATA 58.363 36.000 0.00 0.00 0.00 0.98
7337 7474 7.287235 AGCTAAACGTTGTCCTAATATACTCCT 59.713 37.037 0.00 0.00 0.00 3.69
7340 7477 6.551385 ACGTTGTCCTAATATACTCCTACG 57.449 41.667 0.00 0.00 0.00 3.51
7354 7491 9.742144 ATATACTCCTACGTTACAGAGATTGAT 57.258 33.333 0.00 0.00 0.00 2.57
7413 7563 1.079819 ATCGTCCCGTTGTGCTCAG 60.080 57.895 0.00 0.00 0.00 3.35
7414 7564 1.816863 ATCGTCCCGTTGTGCTCAGT 61.817 55.000 0.00 0.00 0.00 3.41
7417 7568 0.531974 GTCCCGTTGTGCTCAGTTCA 60.532 55.000 0.00 0.00 0.00 3.18
7420 7571 1.511850 CCGTTGTGCTCAGTTCATGA 58.488 50.000 0.00 0.00 36.21 3.07
7462 7636 6.628185 AGAAAATCATCACTGCCAAAATCTC 58.372 36.000 0.00 0.00 0.00 2.75
7472 7646 0.749454 CCAAAATCTCCTCCCCAGCG 60.749 60.000 0.00 0.00 0.00 5.18
7505 7706 1.006086 CGCAGAACGTTATGATGCCA 58.994 50.000 26.06 0.00 36.87 4.92
7513 7714 2.209273 CGTTATGATGCCAATGGACGA 58.791 47.619 2.05 0.00 0.00 4.20
7523 7724 2.867429 CCAATGGACGAGATTGCAAAC 58.133 47.619 1.71 0.00 30.66 2.93
7532 7733 4.848757 ACGAGATTGCAAACAGAGAAAAC 58.151 39.130 1.71 0.00 0.00 2.43
7534 7735 3.632189 AGATTGCAAACAGAGAAAACGC 58.368 40.909 1.71 0.00 0.00 4.84
7535 7736 2.929531 TTGCAAACAGAGAAAACGCA 57.070 40.000 0.00 0.00 0.00 5.24
7536 7737 2.473530 TGCAAACAGAGAAAACGCAG 57.526 45.000 0.00 0.00 0.00 5.18
7537 7738 1.123655 GCAAACAGAGAAAACGCAGC 58.876 50.000 0.00 0.00 0.00 5.25
7538 7739 1.533756 GCAAACAGAGAAAACGCAGCA 60.534 47.619 0.00 0.00 0.00 4.41
7539 7740 2.111756 CAAACAGAGAAAACGCAGCAC 58.888 47.619 0.00 0.00 0.00 4.40
7556 7760 3.306703 CAGCACGCACAAAAGAAAAACAT 59.693 39.130 0.00 0.00 0.00 2.71
7650 7854 2.032030 CCCAGACGTTGTTGTAAGCAAG 60.032 50.000 0.00 0.00 34.94 4.01
7659 7863 4.461992 TGTTGTAAGCAAGCGAACTAAC 57.538 40.909 0.00 0.00 34.94 2.34
7660 7864 3.060138 TGTTGTAAGCAAGCGAACTAACG 60.060 43.478 0.00 0.00 34.94 3.18
7661 7865 2.746269 TGTAAGCAAGCGAACTAACGT 58.254 42.857 0.00 0.00 35.59 3.99
7668 7872 3.424433 GCAAGCGAACTAACGTGCTATTT 60.424 43.478 0.00 0.00 36.49 1.40
7669 7873 4.201647 GCAAGCGAACTAACGTGCTATTTA 60.202 41.667 0.00 0.00 36.49 1.40
7699 7903 3.256136 AGACGTTTCTCCTGGTAGACAAG 59.744 47.826 0.00 0.00 0.00 3.16
7700 7904 2.963782 ACGTTTCTCCTGGTAGACAAGT 59.036 45.455 0.00 0.00 0.00 3.16
7701 7905 4.147321 ACGTTTCTCCTGGTAGACAAGTA 58.853 43.478 0.00 0.00 0.00 2.24
7702 7906 4.217983 ACGTTTCTCCTGGTAGACAAGTAG 59.782 45.833 0.00 0.00 0.00 2.57
7708 7912 0.245539 TGGTAGACAAGTAGCACGGC 59.754 55.000 0.00 0.00 0.00 5.68
7709 7913 0.801067 GGTAGACAAGTAGCACGGCG 60.801 60.000 4.80 4.80 0.00 6.46
7712 7916 0.599558 AGACAAGTAGCACGGCGTTA 59.400 50.000 11.19 0.00 0.00 3.18
7718 7922 1.997606 AGTAGCACGGCGTTACAAATC 59.002 47.619 20.28 5.26 33.95 2.17
7740 7945 0.398696 TCGCCTGGCCTTTTACAGAA 59.601 50.000 14.12 0.00 36.86 3.02
7787 7996 9.353999 GGTAAATTTGTAATAAAACTCTGCTGG 57.646 33.333 0.00 0.00 0.00 4.85
7797 8006 0.036875 ACTCTGCTGGTAACCCAAGC 59.963 55.000 0.00 0.00 41.27 4.01
7804 8013 0.539438 TGGTAACCCAAGCAGCAAGG 60.539 55.000 0.00 0.00 37.98 3.61
7805 8014 1.586541 GTAACCCAAGCAGCAAGGC 59.413 57.895 0.00 0.00 0.00 4.35
7806 8015 1.971167 TAACCCAAGCAGCAAGGCG 60.971 57.895 0.00 0.00 39.27 5.52
7807 8016 2.404566 TAACCCAAGCAGCAAGGCGA 62.405 55.000 0.00 0.00 39.27 5.54
7808 8017 2.753043 CCCAAGCAGCAAGGCGAT 60.753 61.111 0.00 0.00 39.27 4.58
7809 8018 1.451927 CCCAAGCAGCAAGGCGATA 60.452 57.895 0.00 0.00 39.27 2.92
7810 8019 1.718757 CCCAAGCAGCAAGGCGATAC 61.719 60.000 0.00 0.00 39.27 2.24
7811 8020 1.026182 CCAAGCAGCAAGGCGATACA 61.026 55.000 0.00 0.00 39.27 2.29
7815 8024 2.094675 AGCAGCAAGGCGATACAAAAT 58.905 42.857 0.00 0.00 39.27 1.82
7822 8031 4.662145 CAAGGCGATACAAAATCCTTCAC 58.338 43.478 0.00 0.00 35.14 3.18
7825 8034 3.065371 GGCGATACAAAATCCTTCACCTG 59.935 47.826 0.00 0.00 0.00 4.00
7826 8035 3.938963 GCGATACAAAATCCTTCACCTGA 59.061 43.478 0.00 0.00 0.00 3.86
7836 8045 4.781775 TCCTTCACCTGACCTTTTACAA 57.218 40.909 0.00 0.00 0.00 2.41
7843 8052 5.355910 TCACCTGACCTTTTACAAAGTGAAC 59.644 40.000 0.00 0.00 31.33 3.18
7844 8053 4.334481 ACCTGACCTTTTACAAAGTGAACG 59.666 41.667 0.00 0.00 0.00 3.95
7845 8054 4.279659 CTGACCTTTTACAAAGTGAACGC 58.720 43.478 0.00 0.00 0.00 4.84
7846 8055 3.065648 TGACCTTTTACAAAGTGAACGCC 59.934 43.478 0.00 0.00 0.00 5.68
7847 8056 3.018149 ACCTTTTACAAAGTGAACGCCA 58.982 40.909 0.00 0.00 0.00 5.69
7848 8057 3.181494 ACCTTTTACAAAGTGAACGCCAC 60.181 43.478 0.74 0.74 46.03 5.01
7849 8058 3.368495 CTTTTACAAAGTGAACGCCACC 58.632 45.455 5.10 0.00 46.87 4.61
7850 8059 2.039818 TTACAAAGTGAACGCCACCA 57.960 45.000 5.10 0.00 46.87 4.17
7851 8060 1.301423 TACAAAGTGAACGCCACCAC 58.699 50.000 5.10 0.00 46.87 4.16
7852 8061 1.358759 CAAAGTGAACGCCACCACC 59.641 57.895 5.10 0.00 46.87 4.61
7853 8062 2.184167 AAAGTGAACGCCACCACCG 61.184 57.895 5.10 0.00 46.87 4.94
7854 8063 2.879813 AAAGTGAACGCCACCACCGT 62.880 55.000 5.10 0.00 46.87 4.83
7855 8064 3.645975 GTGAACGCCACCACCGTG 61.646 66.667 0.00 0.00 39.86 4.94
7971 8211 1.445942 GCCTACTGCTGGCCGATTA 59.554 57.895 0.00 0.00 44.32 1.75
8290 8569 4.037858 ACCGTCGAATAGGTATGTGAAC 57.962 45.455 6.69 0.00 39.30 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.255486 GGTGATTAGGTTTGTTAGTGCTTTTCT 60.255 37.037 0.00 0.00 0.00 2.52
2 3 6.322712 TGGTGATTAGGTTTGTTAGTGCTTTT 59.677 34.615 0.00 0.00 0.00 2.27
6 7 5.897377 ATGGTGATTAGGTTTGTTAGTGC 57.103 39.130 0.00 0.00 0.00 4.40
24 27 6.594788 AGTTTTGCATGTTCTGAATATGGT 57.405 33.333 23.00 0.00 31.45 3.55
57 60 1.214175 TGTGGTCTTTGTGGTGGATGT 59.786 47.619 0.00 0.00 0.00 3.06
66 69 4.755123 GCTACTGTGTTATGTGGTCTTTGT 59.245 41.667 0.00 0.00 0.00 2.83
151 154 1.975407 CTTGTGCTCAGCTTGGGGG 60.975 63.158 0.00 0.00 0.00 5.40
157 160 0.179037 TCAGTTGCTTGTGCTCAGCT 60.179 50.000 0.00 0.00 40.48 4.24
223 226 6.292150 TGGGTTGGGATTGTTTGATTTTTAC 58.708 36.000 0.00 0.00 0.00 2.01
251 262 2.355193 GGTTCTCCTCCGCAGCTCT 61.355 63.158 0.00 0.00 0.00 4.09
254 265 2.435059 GTGGTTCTCCTCCGCAGC 60.435 66.667 0.00 0.00 35.75 5.25
255 266 2.266055 GGTGGTTCTCCTCCGCAG 59.734 66.667 0.00 0.00 37.58 5.18
256 267 3.319198 GGGTGGTTCTCCTCCGCA 61.319 66.667 0.00 0.00 45.44 5.69
257 268 4.452733 CGGGTGGTTCTCCTCCGC 62.453 72.222 0.00 0.00 45.44 5.54
258 269 2.280552 TTCGGGTGGTTCTCCTCCG 61.281 63.158 11.11 11.11 45.44 4.63
259 270 1.295746 GTTCGGGTGGTTCTCCTCC 59.704 63.158 0.00 0.00 44.20 4.30
260 271 1.080025 CGTTCGGGTGGTTCTCCTC 60.080 63.158 0.00 0.00 34.23 3.71
261 272 1.117142 TTCGTTCGGGTGGTTCTCCT 61.117 55.000 0.00 0.00 34.23 3.69
278 289 2.223525 CGATTCGTACAGAGGGGTCTTC 60.224 54.545 0.00 0.00 0.00 2.87
293 304 2.159430 TCACATTGTTTCAGGCGATTCG 59.841 45.455 0.62 0.62 0.00 3.34
318 330 3.326836 TCATGTGTGATGCGACCTTTA 57.673 42.857 0.00 0.00 0.00 1.85
321 333 1.270785 TGTTCATGTGTGATGCGACCT 60.271 47.619 0.00 0.00 33.56 3.85
336 396 4.069312 TCCTAGGATTGGTAGGTGTTCA 57.931 45.455 7.62 0.00 38.62 3.18
337 397 5.632034 ATTCCTAGGATTGGTAGGTGTTC 57.368 43.478 13.57 0.00 38.62 3.18
338 398 5.340027 CCAATTCCTAGGATTGGTAGGTGTT 60.340 44.000 27.99 4.60 39.82 3.32
339 399 4.166144 CCAATTCCTAGGATTGGTAGGTGT 59.834 45.833 27.99 5.15 39.82 4.16
340 400 4.446311 CCCAATTCCTAGGATTGGTAGGTG 60.446 50.000 30.70 20.47 42.34 4.00
342 402 3.722101 ACCCAATTCCTAGGATTGGTAGG 59.278 47.826 30.70 23.74 42.34 3.18
343 403 4.166144 ACACCCAATTCCTAGGATTGGTAG 59.834 45.833 30.70 26.58 42.34 3.18
344 404 4.080015 CACACCCAATTCCTAGGATTGGTA 60.080 45.833 30.70 14.60 42.34 3.25
345 405 2.926329 ACACCCAATTCCTAGGATTGGT 59.074 45.455 30.70 23.39 42.34 3.67
346 406 3.290710 CACACCCAATTCCTAGGATTGG 58.709 50.000 28.71 28.71 43.24 3.16
347 407 3.696051 CACACACCCAATTCCTAGGATTG 59.304 47.826 13.57 17.34 0.00 2.67
348 408 3.333680 ACACACACCCAATTCCTAGGATT 59.666 43.478 13.57 6.29 0.00 3.01
349 409 2.919602 ACACACACCCAATTCCTAGGAT 59.080 45.455 13.57 0.00 0.00 3.24
350 410 2.039746 CACACACACCCAATTCCTAGGA 59.960 50.000 7.62 7.62 0.00 2.94
351 411 2.224769 ACACACACACCCAATTCCTAGG 60.225 50.000 0.82 0.82 0.00 3.02
352 412 2.813754 CACACACACACCCAATTCCTAG 59.186 50.000 0.00 0.00 0.00 3.02
353 413 2.173782 ACACACACACACCCAATTCCTA 59.826 45.455 0.00 0.00 0.00 2.94
354 414 1.064017 ACACACACACACCCAATTCCT 60.064 47.619 0.00 0.00 0.00 3.36
355 415 1.066908 CACACACACACACCCAATTCC 59.933 52.381 0.00 0.00 0.00 3.01
356 416 1.066908 CCACACACACACACCCAATTC 59.933 52.381 0.00 0.00 0.00 2.17
357 417 1.110442 CCACACACACACACCCAATT 58.890 50.000 0.00 0.00 0.00 2.32
358 418 0.754957 CCCACACACACACACCCAAT 60.755 55.000 0.00 0.00 0.00 3.16
359 419 1.379176 CCCACACACACACACCCAA 60.379 57.895 0.00 0.00 0.00 4.12
360 420 2.273776 CCCACACACACACACCCA 59.726 61.111 0.00 0.00 0.00 4.51
361 421 2.518349 CCCCACACACACACACCC 60.518 66.667 0.00 0.00 0.00 4.61
362 422 2.518349 CCCCCACACACACACACC 60.518 66.667 0.00 0.00 0.00 4.16
380 440 2.003937 TTGGTTTGTTTAGCTCCCCC 57.996 50.000 0.00 0.00 0.00 5.40
381 441 4.409718 TTTTTGGTTTGTTTAGCTCCCC 57.590 40.909 0.00 0.00 0.00 4.81
401 461 7.752239 CGTGCATGTTCATCTTTAGATCTTTTT 59.248 33.333 0.00 0.00 31.21 1.94
402 462 7.119699 TCGTGCATGTTCATCTTTAGATCTTTT 59.880 33.333 0.00 0.00 31.21 2.27
403 463 6.595326 TCGTGCATGTTCATCTTTAGATCTTT 59.405 34.615 0.00 0.00 31.21 2.52
404 464 6.036517 GTCGTGCATGTTCATCTTTAGATCTT 59.963 38.462 0.00 0.00 31.21 2.40
405 465 5.521735 GTCGTGCATGTTCATCTTTAGATCT 59.478 40.000 5.68 0.00 31.21 2.75
449 509 0.107945 GCTCGTTTGCTCATCCCTCT 60.108 55.000 0.00 0.00 0.00 3.69
487 547 1.890876 TGCCAGCGTAAAGTCATGTT 58.109 45.000 0.00 0.00 0.00 2.71
509 569 2.380064 TGGTGATTCCAGTGGCTTTT 57.620 45.000 3.51 0.00 41.93 2.27
544 605 4.947388 AGAACTGAAGAGAGAAGCGACTAT 59.053 41.667 0.00 0.00 0.00 2.12
607 668 2.749076 TCCTCTTGTCCATTTTGCATCG 59.251 45.455 0.00 0.00 0.00 3.84
660 721 9.691362 TTGGTTGTCTTTCTCTTAATATTTTGC 57.309 29.630 0.00 0.00 0.00 3.68
674 735 5.652452 AGCCACCTATTATTGGTTGTCTTTC 59.348 40.000 0.00 0.00 35.28 2.62
690 751 2.419990 CGGATTTCATGTGAGCCACCTA 60.420 50.000 6.27 0.00 32.73 3.08
699 760 6.554419 TGCTTTTCTTATCGGATTTCATGTG 58.446 36.000 0.00 0.00 0.00 3.21
700 761 6.757897 TGCTTTTCTTATCGGATTTCATGT 57.242 33.333 0.00 0.00 0.00 3.21
703 764 5.357878 AGCATGCTTTTCTTATCGGATTTCA 59.642 36.000 16.30 0.00 0.00 2.69
704 765 5.825507 AGCATGCTTTTCTTATCGGATTTC 58.174 37.500 16.30 0.00 0.00 2.17
728 789 6.088085 GCGAGATGAACCAACTTAACATTTTG 59.912 38.462 0.00 0.00 0.00 2.44
729 790 6.149633 GCGAGATGAACCAACTTAACATTTT 58.850 36.000 0.00 0.00 0.00 1.82
736 798 2.029739 TGTCGCGAGATGAACCAACTTA 60.030 45.455 10.24 0.00 45.19 2.24
738 800 0.317160 TGTCGCGAGATGAACCAACT 59.683 50.000 10.24 0.00 45.19 3.16
750 812 2.811855 TGTGTTACTTTTCTGTCGCGA 58.188 42.857 3.71 3.71 0.00 5.87
753 815 5.615581 CACGATTTGTGTTACTTTTCTGTCG 59.384 40.000 0.00 0.00 43.88 4.35
769 831 0.377905 TGATGATGCGCCACGATTTG 59.622 50.000 4.18 0.00 0.00 2.32
770 832 0.659427 CTGATGATGCGCCACGATTT 59.341 50.000 4.18 0.00 0.00 2.17
787 849 6.529829 TGTCTTTCGTTCAAAATTTTGGTCTG 59.470 34.615 26.45 15.75 38.66 3.51
804 866 5.086058 CCGGTTGAAATGTAATGTCTTTCG 58.914 41.667 0.00 0.00 29.60 3.46
809 871 5.365403 TTGTCCGGTTGAAATGTAATGTC 57.635 39.130 0.00 0.00 0.00 3.06
811 873 7.170658 ACATTTTTGTCCGGTTGAAATGTAATG 59.829 33.333 24.92 18.36 44.51 1.90
821 884 2.215907 TGCACATTTTTGTCCGGTTG 57.784 45.000 0.00 0.00 0.00 3.77
826 889 3.389221 ACGGATTTGCACATTTTTGTCC 58.611 40.909 0.00 0.00 0.00 4.02
835 898 6.758886 AGTGAAAATTTAAACGGATTTGCACA 59.241 30.769 18.73 5.12 46.90 4.57
837 900 7.206687 AGAGTGAAAATTTAAACGGATTTGCA 58.793 30.769 0.00 0.00 30.26 4.08
843 906 6.512091 CGTGGAAGAGTGAAAATTTAAACGGA 60.512 38.462 0.00 0.00 0.00 4.69
849 912 5.298276 AGTTGCGTGGAAGAGTGAAAATTTA 59.702 36.000 0.00 0.00 0.00 1.40
852 915 3.214328 AGTTGCGTGGAAGAGTGAAAAT 58.786 40.909 0.00 0.00 0.00 1.82
856 919 3.258372 AGAATAGTTGCGTGGAAGAGTGA 59.742 43.478 0.00 0.00 0.00 3.41
857 920 3.589988 AGAATAGTTGCGTGGAAGAGTG 58.410 45.455 0.00 0.00 0.00 3.51
858 921 3.511934 AGAGAATAGTTGCGTGGAAGAGT 59.488 43.478 0.00 0.00 0.00 3.24
1114 1179 2.066999 GGCTGGGTCCGGAGATTCT 61.067 63.158 3.06 0.00 0.00 2.40
1307 1372 2.083774 CAATCCCAGCTTGCGAGTTAA 58.916 47.619 2.14 0.00 0.00 2.01
1310 1375 0.036732 TTCAATCCCAGCTTGCGAGT 59.963 50.000 2.14 0.00 0.00 4.18
1358 1424 4.183686 CGGATTGCAGCAAGGCCG 62.184 66.667 27.77 27.77 38.28 6.13
1365 1431 2.491621 GGCCTTTCGGATTGCAGC 59.508 61.111 0.00 0.00 0.00 5.25
1376 1442 2.859951 ACTAGTGAATAGGGGGCCTTT 58.140 47.619 0.84 0.00 35.63 3.11
1382 1448 7.071321 AGGAAATACAGAACTAGTGAATAGGGG 59.929 40.741 0.00 0.00 35.63 4.79
1391 1460 6.919775 ACTCACAGGAAATACAGAACTAGT 57.080 37.500 0.00 0.00 0.00 2.57
1398 1469 7.766278 ACTTGCTTATACTCACAGGAAATACAG 59.234 37.037 0.00 0.00 0.00 2.74
1417 1488 2.042464 TCCAGACTCTGACACTTGCTT 58.958 47.619 7.69 0.00 32.44 3.91
1428 1499 1.203237 ACCACCTCACATCCAGACTCT 60.203 52.381 0.00 0.00 0.00 3.24
1469 1540 3.063997 GCCCAATTGACACGATCTAACAG 59.936 47.826 7.12 0.00 0.00 3.16
1546 1617 6.949715 ACTACCGTTACTTCCATATCCAAAA 58.050 36.000 0.00 0.00 0.00 2.44
1547 1618 6.549433 ACTACCGTTACTTCCATATCCAAA 57.451 37.500 0.00 0.00 0.00 3.28
1548 1619 6.239120 GCTACTACCGTTACTTCCATATCCAA 60.239 42.308 0.00 0.00 0.00 3.53
1618 1689 7.936950 ATGACACTGTAGAATGATTCATACG 57.063 36.000 8.03 6.54 0.00 3.06
1672 1743 5.187186 CCAGCTTTGGAGTTAGGAACTACTA 59.813 44.000 3.36 0.00 42.67 1.82
1673 1744 4.020128 CCAGCTTTGGAGTTAGGAACTACT 60.020 45.833 3.36 0.00 42.67 2.57
1674 1745 4.254492 CCAGCTTTGGAGTTAGGAACTAC 58.746 47.826 0.00 0.00 42.67 2.73
1968 2039 0.463474 GACCCCAGAATGCAGCTCTC 60.463 60.000 0.00 0.00 31.97 3.20
2123 2195 6.642733 ATAACCTCCTTCTGGAATTTCTCA 57.357 37.500 0.00 0.00 42.66 3.27
2637 2709 2.237392 AGGGTAGCTAGAAGGCTGTTTG 59.763 50.000 0.00 0.00 43.01 2.93
2649 2721 7.742767 AGTTTACTTCTTTGAAAGGGTAGCTA 58.257 34.615 4.94 0.00 0.00 3.32
2790 2862 5.010112 TGAAAGATCGAGCAACCCTATAGAG 59.990 44.000 2.38 0.00 0.00 2.43
2804 2876 7.986889 TCCTTATGTTCAATCATGAAAGATCGA 59.013 33.333 0.00 0.00 46.66 3.59
2889 2963 3.056536 TGGTCTGTGAGAGTATGACTTGC 60.057 47.826 0.00 0.00 0.00 4.01
3197 3275 9.832445 AGAGAAAGTGTGTATGAACTTTAGAAA 57.168 29.630 1.07 0.00 44.53 2.52
3387 3466 5.388111 CATTGACAACACTAGCAATGACTG 58.612 41.667 11.07 0.00 46.37 3.51
3439 3519 9.109393 GGTGCAATACAGAATACTCTTATCAAA 57.891 33.333 0.00 0.00 0.00 2.69
3530 3610 6.567602 AGGAATCAGGTTAGCTGATAAACT 57.432 37.500 24.46 18.98 42.40 2.66
3557 3637 6.153067 CCGATACATCATTCTGAGAAGGTAC 58.847 44.000 6.75 0.00 0.00 3.34
3617 3697 9.567776 TTCAAGTTCATAGTCATCCTTTTTACA 57.432 29.630 0.00 0.00 0.00 2.41
3838 3918 6.211515 AGCTTGTGCAAAACTTATCAAGAAG 58.788 36.000 12.16 0.00 42.74 2.85
3839 3919 6.147864 AGCTTGTGCAAAACTTATCAAGAA 57.852 33.333 12.16 0.00 42.74 2.52
3840 3920 5.772825 AGCTTGTGCAAAACTTATCAAGA 57.227 34.783 12.16 0.00 42.74 3.02
3994 4074 3.876320 GCCTCAGCTTTTGGAGATAGAAG 59.124 47.826 0.48 0.00 35.50 2.85
4180 4261 1.093159 GCTGTCTCTGCCAGAAATGG 58.907 55.000 0.00 0.00 30.72 3.16
4270 4352 4.201832 GGATCTGTGAGTGTACTGACTACG 60.202 50.000 3.44 0.00 32.47 3.51
4337 4419 8.897872 AGCAAGATTCTGAACAAATCAAATTT 57.102 26.923 0.00 0.00 37.67 1.82
5334 5437 3.970610 CGACATTGAAGCAACAGAAACTG 59.029 43.478 0.00 0.00 37.52 3.16
5355 5458 3.432782 GACCTACAGTTCGGTTATGTCG 58.567 50.000 0.00 0.00 32.62 4.35
5419 5522 9.570468 AGAAGCACATCATATTATTCTCAACAT 57.430 29.630 0.00 0.00 0.00 2.71
5456 5559 7.670605 TTCTTTTAGGGCTATCTGCTAGTAA 57.329 36.000 0.00 0.00 42.39 2.24
5504 5607 6.613755 ATGATAAATGTAAACCCTGCGTAC 57.386 37.500 0.00 0.00 0.00 3.67
5515 5618 5.585445 ACCAACGGCGTAATGATAAATGTAA 59.415 36.000 15.20 0.00 0.00 2.41
5517 5620 3.942748 ACCAACGGCGTAATGATAAATGT 59.057 39.130 15.20 0.00 0.00 2.71
5753 5856 2.270352 ACGAAAAGGGCACATCAAGA 57.730 45.000 0.00 0.00 0.00 3.02
5758 5861 2.752903 GTTCCATACGAAAAGGGCACAT 59.247 45.455 0.00 0.00 30.39 3.21
5771 5878 6.147164 TCTGAAACGACTCATTTGTTCCATAC 59.853 38.462 0.00 0.00 29.53 2.39
5798 5905 3.725634 AGTTCCTATACCAACAGGAGCT 58.274 45.455 1.60 1.60 44.80 4.09
5979 6086 9.685276 TGTTATGATTTTCCTATGATGACAAGT 57.315 29.630 0.00 0.00 0.00 3.16
6275 6383 5.061179 GCCTTTTCCAGACTAAGTAACACA 58.939 41.667 0.00 0.00 0.00 3.72
6279 6387 6.123651 TGTTTGCCTTTTCCAGACTAAGTAA 58.876 36.000 0.00 0.00 0.00 2.24
6280 6388 5.686753 TGTTTGCCTTTTCCAGACTAAGTA 58.313 37.500 0.00 0.00 0.00 2.24
6281 6389 4.532834 TGTTTGCCTTTTCCAGACTAAGT 58.467 39.130 0.00 0.00 0.00 2.24
6282 6390 4.821805 TCTGTTTGCCTTTTCCAGACTAAG 59.178 41.667 0.00 0.00 0.00 2.18
6437 6550 2.255316 GAAACTCGTAGCAGCAGACTC 58.745 52.381 0.00 0.00 0.00 3.36
6597 6719 3.254903 CCAAAACTTACTGGTGGTTAGGC 59.745 47.826 0.00 0.00 0.00 3.93
6779 6908 6.407475 AAAAGAATGGCGCAATGATTTTAC 57.593 33.333 10.83 0.00 0.00 2.01
6795 6924 9.933723 CATATCAAAAACCAAGAGGAAAAGAAT 57.066 29.630 0.00 0.00 38.69 2.40
6836 6970 5.045942 TCAGGATGCAGACCAAACATAACTA 60.046 40.000 13.88 0.00 34.76 2.24
6905 7039 8.527810 TCCAAAGTGTTCACAAGATAACTTTTT 58.472 29.630 5.74 0.00 37.53 1.94
6908 7042 7.054124 TCTCCAAAGTGTTCACAAGATAACTT 58.946 34.615 5.74 0.00 33.59 2.66
6910 7044 6.861065 TCTCCAAAGTGTTCACAAGATAAC 57.139 37.500 5.74 0.00 0.00 1.89
6939 7073 1.556911 TCTCAACATCAGCTCCTTCCC 59.443 52.381 0.00 0.00 0.00 3.97
6940 7074 3.557228 ATCTCAACATCAGCTCCTTCC 57.443 47.619 0.00 0.00 0.00 3.46
6941 7075 4.094590 CACAATCTCAACATCAGCTCCTTC 59.905 45.833 0.00 0.00 0.00 3.46
6942 7076 4.008330 CACAATCTCAACATCAGCTCCTT 58.992 43.478 0.00 0.00 0.00 3.36
7017 7153 2.919494 GCTTCCCACCAAACCTGCG 61.919 63.158 0.00 0.00 0.00 5.18
7094 7230 0.531532 CCAGCCTTGATACCTCAGCG 60.532 60.000 0.00 0.00 31.68 5.18
7103 7239 1.001641 AAAGCGCTCCAGCCTTGAT 60.002 52.632 12.06 0.00 37.91 2.57
7142 7278 6.110707 GGGTGATCGAAAAACTTCCTATGTA 58.889 40.000 0.00 0.00 0.00 2.29
7184 7320 6.592220 TGTAAATTTCACGCTATCAGCTACAA 59.408 34.615 0.00 0.00 39.60 2.41
7206 7342 7.367159 TCTTTTCTGTTTCGTTGTTCTTGTA 57.633 32.000 0.00 0.00 0.00 2.41
7218 7354 2.030451 CCCAGCTGCTCTTTTCTGTTTC 60.030 50.000 8.66 0.00 0.00 2.78
7240 7376 6.624352 ATGAATAATCGGACAAACAGATGG 57.376 37.500 0.00 0.00 34.00 3.51
7249 7385 6.202762 GCAGTCACAATATGAATAATCGGACA 59.797 38.462 0.00 0.00 39.72 4.02
7265 7401 2.810400 GCTAACCCAGAAGCAGTCACAA 60.810 50.000 0.00 0.00 38.63 3.33
7319 7455 8.840321 TGTAACGTAGGAGTATATTAGGACAAC 58.160 37.037 0.00 0.00 0.00 3.32
7330 7466 7.720074 TGATCAATCTCTGTAACGTAGGAGTAT 59.280 37.037 0.00 0.00 0.00 2.12
7337 7474 8.175069 GCAAAAATGATCAATCTCTGTAACGTA 58.825 33.333 0.00 0.00 0.00 3.57
7340 7477 7.315142 TGGCAAAAATGATCAATCTCTGTAAC 58.685 34.615 0.00 0.00 0.00 2.50
7413 7563 4.214119 ACAACGGCAGCATATATCATGAAC 59.786 41.667 0.00 0.00 0.00 3.18
7414 7564 4.388485 ACAACGGCAGCATATATCATGAA 58.612 39.130 0.00 0.00 0.00 2.57
7417 7568 5.793817 TCTAACAACGGCAGCATATATCAT 58.206 37.500 0.00 0.00 0.00 2.45
7420 7571 6.935741 TTTTCTAACAACGGCAGCATATAT 57.064 33.333 0.00 0.00 0.00 0.86
7462 7636 2.527951 CTTGGTCTTCGCTGGGGAGG 62.528 65.000 0.00 0.00 0.00 4.30
7472 7646 2.370281 TCTGCGTCATCTTGGTCTTC 57.630 50.000 0.00 0.00 0.00 2.87
7505 7706 3.411446 TCTGTTTGCAATCTCGTCCATT 58.589 40.909 0.00 0.00 0.00 3.16
7513 7714 3.066621 TGCGTTTTCTCTGTTTGCAATCT 59.933 39.130 0.00 0.00 0.00 2.40
7523 7724 1.439365 GCGTGCTGCGTTTTCTCTG 60.439 57.895 0.00 0.00 43.66 3.35
7534 7735 2.665537 TGTTTTTCTTTTGTGCGTGCTG 59.334 40.909 0.00 0.00 0.00 4.41
7535 7736 2.953020 TGTTTTTCTTTTGTGCGTGCT 58.047 38.095 0.00 0.00 0.00 4.40
7536 7737 3.923827 ATGTTTTTCTTTTGTGCGTGC 57.076 38.095 0.00 0.00 0.00 5.34
7537 7738 7.397970 ACAATTATGTTTTTCTTTTGTGCGTG 58.602 30.769 0.00 0.00 35.91 5.34
7538 7739 7.491048 AGACAATTATGTTTTTCTTTTGTGCGT 59.509 29.630 0.00 0.00 40.74 5.24
7539 7740 7.788846 CAGACAATTATGTTTTTCTTTTGTGCG 59.211 33.333 0.00 0.00 40.74 5.34
7540 7741 8.816144 TCAGACAATTATGTTTTTCTTTTGTGC 58.184 29.630 0.00 0.00 40.74 4.57
7542 7743 9.034544 GCTCAGACAATTATGTTTTTCTTTTGT 57.965 29.630 0.00 0.00 40.74 2.83
7545 7746 7.154656 GGGCTCAGACAATTATGTTTTTCTTT 58.845 34.615 0.00 0.00 40.74 2.52
7548 7749 6.024552 TGGGCTCAGACAATTATGTTTTTC 57.975 37.500 0.00 0.00 40.74 2.29
7556 7760 2.354704 CGAACCTGGGCTCAGACAATTA 60.355 50.000 17.43 0.00 43.49 1.40
7586 7790 6.127786 ACGTTAGTCTCATACACTAAAGGTCC 60.128 42.308 9.37 0.00 39.05 4.46
7587 7791 6.746364 CACGTTAGTCTCATACACTAAAGGTC 59.254 42.308 9.37 0.00 39.05 3.85
7599 7803 6.282199 AGTTGGTTATCACGTTAGTCTCAT 57.718 37.500 0.00 0.00 0.00 2.90
7669 7873 9.584008 TCTACCAGGAGAAACGTCTTATTATAT 57.416 33.333 0.00 0.00 32.80 0.86
7678 7882 3.005578 ACTTGTCTACCAGGAGAAACGTC 59.994 47.826 0.00 0.00 0.00 4.34
7681 7885 4.021368 TGCTACTTGTCTACCAGGAGAAAC 60.021 45.833 0.00 0.00 0.00 2.78
7688 7892 1.736032 GCCGTGCTACTTGTCTACCAG 60.736 57.143 0.00 0.00 0.00 4.00
7694 7898 0.712222 GTAACGCCGTGCTACTTGTC 59.288 55.000 0.00 0.00 0.00 3.18
7699 7903 1.061566 GGATTTGTAACGCCGTGCTAC 59.938 52.381 0.00 0.00 0.00 3.58
7700 7904 1.066716 AGGATTTGTAACGCCGTGCTA 60.067 47.619 0.00 0.00 0.00 3.49
7701 7905 0.321298 AGGATTTGTAACGCCGTGCT 60.321 50.000 0.00 0.00 0.00 4.40
7702 7906 0.519961 AAGGATTTGTAACGCCGTGC 59.480 50.000 0.00 0.00 0.00 5.34
7708 7912 1.396996 CCAGGCGAAGGATTTGTAACG 59.603 52.381 0.00 0.00 0.00 3.18
7709 7913 1.132453 GCCAGGCGAAGGATTTGTAAC 59.868 52.381 0.00 0.00 0.00 2.50
7712 7916 1.678970 GGCCAGGCGAAGGATTTGT 60.679 57.895 5.00 0.00 0.00 2.83
7718 7922 0.608035 TGTAAAAGGCCAGGCGAAGG 60.608 55.000 5.01 0.00 0.00 3.46
7740 7945 1.710996 TTCCCGGTGGTGGTGTTCAT 61.711 55.000 0.00 0.00 0.00 2.57
7787 7996 1.586541 GCCTTGCTGCTTGGGTTAC 59.413 57.895 0.00 0.00 0.00 2.50
7797 8006 2.684881 AGGATTTTGTATCGCCTTGCTG 59.315 45.455 0.00 0.00 0.00 4.41
7800 8009 4.438744 GGTGAAGGATTTTGTATCGCCTTG 60.439 45.833 0.00 0.00 38.96 3.61
7804 8013 3.938963 TCAGGTGAAGGATTTTGTATCGC 59.061 43.478 0.00 0.00 0.00 4.58
7805 8014 4.332819 GGTCAGGTGAAGGATTTTGTATCG 59.667 45.833 0.00 0.00 0.00 2.92
7806 8015 5.501156 AGGTCAGGTGAAGGATTTTGTATC 58.499 41.667 0.00 0.00 0.00 2.24
7807 8016 5.520748 AGGTCAGGTGAAGGATTTTGTAT 57.479 39.130 0.00 0.00 0.00 2.29
7808 8017 4.993705 AGGTCAGGTGAAGGATTTTGTA 57.006 40.909 0.00 0.00 0.00 2.41
7809 8018 3.884037 AGGTCAGGTGAAGGATTTTGT 57.116 42.857 0.00 0.00 0.00 2.83
7810 8019 5.535753 AAAAGGTCAGGTGAAGGATTTTG 57.464 39.130 0.00 0.00 0.00 2.44
7811 8020 6.133356 TGTAAAAGGTCAGGTGAAGGATTTT 58.867 36.000 0.00 0.00 0.00 1.82
7815 8024 4.781775 TTGTAAAAGGTCAGGTGAAGGA 57.218 40.909 0.00 0.00 0.00 3.36
7822 8031 4.788521 GCGTTCACTTTGTAAAAGGTCAGG 60.789 45.833 4.86 0.00 0.00 3.86
7825 8034 3.065648 TGGCGTTCACTTTGTAAAAGGTC 59.934 43.478 4.86 0.00 0.00 3.85
7826 8035 3.018149 TGGCGTTCACTTTGTAAAAGGT 58.982 40.909 4.86 0.00 0.00 3.50
7836 8045 2.590575 CGGTGGTGGCGTTCACTT 60.591 61.111 10.03 0.00 45.38 3.16
7847 8056 4.935495 CTGGCACTGCACGGTGGT 62.935 66.667 10.60 0.00 37.65 4.16
7851 8060 3.899981 TTAGCCTGGCACTGCACGG 62.900 63.158 22.65 3.49 0.00 4.94
7852 8061 1.308069 AATTAGCCTGGCACTGCACG 61.308 55.000 22.65 0.00 0.00 5.34
7853 8062 0.890683 AAATTAGCCTGGCACTGCAC 59.109 50.000 22.65 0.00 0.00 4.57
7854 8063 1.631405 AAAATTAGCCTGGCACTGCA 58.369 45.000 22.65 0.00 0.00 4.41
7855 8064 2.749280 AAAAATTAGCCTGGCACTGC 57.251 45.000 22.65 0.00 0.00 4.40
7971 8211 0.394565 GCAGTAGGCCGATTGGATCT 59.605 55.000 10.31 1.74 37.49 2.75
8024 8264 1.441729 GCCGACTGGATCCAATCGA 59.558 57.895 39.18 7.88 46.70 3.59
8084 8353 4.973168 AGAAAACAGACTGAGTGCCAATA 58.027 39.130 10.08 0.00 0.00 1.90
8093 8362 2.231478 CGGCCTAGAGAAAACAGACTGA 59.769 50.000 10.08 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.