Multiple sequence alignment - TraesCS2A01G352100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G352100 chr2A 100.000 6068 0 0 1 6068 592699060 592692993 0.000000e+00 11206.0
1 TraesCS2A01G352100 chr2B 91.856 2640 149 30 1783 4401 527879242 527876648 0.000000e+00 3624.0
2 TraesCS2A01G352100 chr2B 88.346 1167 58 21 4499 5634 527876621 527875502 0.000000e+00 1330.0
3 TraesCS2A01G352100 chr2B 92.019 852 43 15 1043 1879 527880082 527879241 0.000000e+00 1173.0
4 TraesCS2A01G352100 chr2B 91.155 407 29 4 5663 6068 527875503 527875103 4.140000e-151 545.0
5 TraesCS2A01G352100 chr2B 86.698 421 10 18 550 928 527880990 527880574 5.620000e-115 425.0
6 TraesCS2A01G352100 chr2B 95.098 102 3 2 4402 4502 629108529 629108629 6.300000e-35 159.0
7 TraesCS2A01G352100 chr2B 83.529 170 23 4 3984 4149 527877228 527877060 2.930000e-33 154.0
8 TraesCS2A01G352100 chr2B 82.075 106 15 3 3796 3900 527877052 527876950 3.010000e-13 87.9
9 TraesCS2A01G352100 chr2D 91.306 2335 123 34 1071 3386 448127575 448125302 0.000000e+00 3114.0
10 TraesCS2A01G352100 chr2D 90.444 1622 75 27 4499 6068 448124397 448122804 0.000000e+00 2063.0
11 TraesCS2A01G352100 chr2D 93.447 824 41 6 3582 4401 448125243 448124429 0.000000e+00 1210.0
12 TraesCS2A01G352100 chr2D 85.865 474 24 32 474 938 448128494 448128055 1.190000e-126 464.0
13 TraesCS2A01G352100 chr2D 80.851 235 36 7 155 383 448130534 448130303 6.250000e-40 176.0
14 TraesCS2A01G352100 chr2D 93.333 105 5 2 4399 4502 166808337 166808234 2.930000e-33 154.0
15 TraesCS2A01G352100 chr2D 90.678 118 7 3 4394 4508 532305888 532306004 2.930000e-33 154.0
16 TraesCS2A01G352100 chr2D 81.319 182 30 3 3796 3977 448124854 448124677 1.760000e-30 145.0
17 TraesCS2A01G352100 chr2D 81.765 170 22 7 3984 4149 448125026 448124862 3.820000e-27 134.0
18 TraesCS2A01G352100 chr3D 97.872 94 2 0 4409 4502 228297082 228297175 4.870000e-36 163.0
19 TraesCS2A01G352100 chr5B 96.907 97 1 2 4409 4504 128676379 128676474 1.750000e-35 161.0
20 TraesCS2A01G352100 chr5B 94.231 104 5 1 4399 4502 229078775 229078877 2.260000e-34 158.0
21 TraesCS2A01G352100 chr4A 96.875 96 3 0 4409 4504 584930964 584931059 1.750000e-35 161.0
22 TraesCS2A01G352100 chr3B 96.875 96 3 0 4409 4504 549335659 549335564 1.750000e-35 161.0
23 TraesCS2A01G352100 chr6B 94.231 104 4 2 4402 4504 95757368 95757266 2.260000e-34 158.0
24 TraesCS2A01G352100 chr6B 95.238 63 3 0 3 65 498651383 498651445 3.870000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G352100 chr2A 592692993 592699060 6067 True 11206.000000 11206 100.000000 1 6068 1 chr2A.!!$R1 6067
1 TraesCS2A01G352100 chr2B 527875103 527880990 5887 True 1048.414286 3624 87.954000 550 6068 7 chr2B.!!$R1 5518
2 TraesCS2A01G352100 chr2D 448122804 448130534 7730 True 1043.714286 3114 86.428143 155 6068 7 chr2D.!!$R2 5913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 2829 0.030603 AGATCTCTCCTCCCCAACCC 60.031 60.0 0.0 0.0 0.00 4.11 F
2727 5021 0.029300 CCAACCGCTGACACTGTTTG 59.971 55.0 0.0 0.0 0.00 2.93 F
2960 5255 0.107654 ATGAGCCCTTCAGCGGTAAC 60.108 55.0 0.0 0.0 39.68 2.50 F
3205 5501 0.247736 AGACAGGATCACCTTGACGC 59.752 55.0 0.0 0.0 45.36 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2967 5262 1.227263 AAGATGGATAAGCGCGCGT 60.227 52.632 32.35 26.23 0.00 6.01 R
4491 6829 1.068588 TCCAAGCGAATACTCCATCCG 59.931 52.381 0.00 0.00 0.00 4.18 R
4851 7192 0.179051 GGATCTGGAGCTGCTGAAGG 60.179 60.000 18.22 0.00 0.00 3.46 R
5146 7511 0.319728 ACTAGCCTATGCATGAGCCG 59.680 55.000 10.16 8.50 41.13 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.837669 CCGCCGTTGTATATTTGGC 57.162 52.632 0.00 0.00 42.29 4.52
19 20 0.309612 CCGCCGTTGTATATTTGGCC 59.690 55.000 0.00 0.00 42.76 5.36
20 21 1.305201 CGCCGTTGTATATTTGGCCT 58.695 50.000 3.32 0.00 42.76 5.19
21 22 1.002900 CGCCGTTGTATATTTGGCCTG 60.003 52.381 3.32 0.00 42.76 4.85
22 23 1.269051 GCCGTTGTATATTTGGCCTGC 60.269 52.381 3.32 0.00 39.83 4.85
23 24 2.020720 CCGTTGTATATTTGGCCTGCA 58.979 47.619 3.32 0.00 0.00 4.41
24 25 2.622942 CCGTTGTATATTTGGCCTGCAT 59.377 45.455 3.32 0.00 0.00 3.96
25 26 3.068024 CCGTTGTATATTTGGCCTGCATT 59.932 43.478 3.32 0.00 0.00 3.56
26 27 4.290155 CGTTGTATATTTGGCCTGCATTC 58.710 43.478 3.32 0.00 0.00 2.67
27 28 4.036734 CGTTGTATATTTGGCCTGCATTCT 59.963 41.667 3.32 0.00 0.00 2.40
28 29 5.284079 GTTGTATATTTGGCCTGCATTCTG 58.716 41.667 3.32 0.00 0.00 3.02
29 30 3.318839 TGTATATTTGGCCTGCATTCTGC 59.681 43.478 3.32 0.00 45.29 4.26
30 31 2.148446 TATTTGGCCTGCATTCTGCT 57.852 45.000 3.32 0.00 45.31 4.24
31 32 1.272807 ATTTGGCCTGCATTCTGCTT 58.727 45.000 3.32 0.00 45.31 3.91
32 33 0.604578 TTTGGCCTGCATTCTGCTTC 59.395 50.000 3.32 0.00 45.31 3.86
33 34 0.251474 TTGGCCTGCATTCTGCTTCT 60.251 50.000 3.32 0.00 45.31 2.85
34 35 0.251474 TGGCCTGCATTCTGCTTCTT 60.251 50.000 3.32 0.00 45.31 2.52
35 36 0.455005 GGCCTGCATTCTGCTTCTTC 59.545 55.000 0.00 0.00 45.31 2.87
36 37 1.461559 GCCTGCATTCTGCTTCTTCT 58.538 50.000 0.34 0.00 45.31 2.85
37 38 1.401199 GCCTGCATTCTGCTTCTTCTC 59.599 52.381 0.34 0.00 45.31 2.87
38 39 1.664659 CCTGCATTCTGCTTCTTCTCG 59.335 52.381 0.34 0.00 45.31 4.04
39 40 2.344950 CTGCATTCTGCTTCTTCTCGT 58.655 47.619 0.34 0.00 45.31 4.18
40 41 3.515630 CTGCATTCTGCTTCTTCTCGTA 58.484 45.455 0.34 0.00 45.31 3.43
41 42 3.254060 TGCATTCTGCTTCTTCTCGTAC 58.746 45.455 0.34 0.00 45.31 3.67
42 43 3.254060 GCATTCTGCTTCTTCTCGTACA 58.746 45.455 0.00 0.00 40.96 2.90
43 44 3.061429 GCATTCTGCTTCTTCTCGTACAC 59.939 47.826 0.00 0.00 40.96 2.90
44 45 4.489810 CATTCTGCTTCTTCTCGTACACT 58.510 43.478 0.00 0.00 0.00 3.55
45 46 3.833545 TCTGCTTCTTCTCGTACACTC 57.166 47.619 0.00 0.00 0.00 3.51
46 47 3.146847 TCTGCTTCTTCTCGTACACTCA 58.853 45.455 0.00 0.00 0.00 3.41
47 48 3.759086 TCTGCTTCTTCTCGTACACTCAT 59.241 43.478 0.00 0.00 0.00 2.90
48 49 4.941873 TCTGCTTCTTCTCGTACACTCATA 59.058 41.667 0.00 0.00 0.00 2.15
49 50 5.414765 TCTGCTTCTTCTCGTACACTCATAA 59.585 40.000 0.00 0.00 0.00 1.90
50 51 5.399858 TGCTTCTTCTCGTACACTCATAAC 58.600 41.667 0.00 0.00 0.00 1.89
51 52 4.799428 GCTTCTTCTCGTACACTCATAACC 59.201 45.833 0.00 0.00 0.00 2.85
52 53 5.621555 GCTTCTTCTCGTACACTCATAACCA 60.622 44.000 0.00 0.00 0.00 3.67
53 54 5.970317 TCTTCTCGTACACTCATAACCAA 57.030 39.130 0.00 0.00 0.00 3.67
54 55 6.335471 TCTTCTCGTACACTCATAACCAAA 57.665 37.500 0.00 0.00 0.00 3.28
55 56 6.387465 TCTTCTCGTACACTCATAACCAAAG 58.613 40.000 0.00 0.00 0.00 2.77
56 57 4.491676 TCTCGTACACTCATAACCAAAGC 58.508 43.478 0.00 0.00 0.00 3.51
57 58 3.592059 TCGTACACTCATAACCAAAGCC 58.408 45.455 0.00 0.00 0.00 4.35
58 59 3.007074 TCGTACACTCATAACCAAAGCCA 59.993 43.478 0.00 0.00 0.00 4.75
59 60 3.749088 CGTACACTCATAACCAAAGCCAA 59.251 43.478 0.00 0.00 0.00 4.52
60 61 4.214545 CGTACACTCATAACCAAAGCCAAA 59.785 41.667 0.00 0.00 0.00 3.28
61 62 5.106317 CGTACACTCATAACCAAAGCCAAAT 60.106 40.000 0.00 0.00 0.00 2.32
62 63 5.138125 ACACTCATAACCAAAGCCAAATG 57.862 39.130 0.00 0.00 0.00 2.32
63 64 4.021192 ACACTCATAACCAAAGCCAAATGG 60.021 41.667 0.00 0.00 42.60 3.16
70 71 2.690786 CCAAAGCCAAATGGTGTCATG 58.309 47.619 0.71 0.00 37.57 3.07
71 72 2.299582 CCAAAGCCAAATGGTGTCATGA 59.700 45.455 0.71 0.00 37.57 3.07
72 73 3.319755 CAAAGCCAAATGGTGTCATGAC 58.680 45.455 19.27 19.27 37.57 3.06
73 74 2.291209 AGCCAAATGGTGTCATGACA 57.709 45.000 24.56 24.56 37.57 3.58
74 75 2.811410 AGCCAAATGGTGTCATGACAT 58.189 42.857 30.10 13.09 43.97 3.06
75 76 2.494471 AGCCAAATGGTGTCATGACATG 59.506 45.455 30.10 22.39 43.97 3.21
76 77 2.883574 CCAAATGGTGTCATGACATGC 58.116 47.619 30.10 18.43 43.97 4.06
77 78 2.494471 CCAAATGGTGTCATGACATGCT 59.506 45.455 30.10 15.12 43.97 3.79
78 79 3.507786 CAAATGGTGTCATGACATGCTG 58.492 45.455 30.10 18.42 43.97 4.41
79 80 1.100510 ATGGTGTCATGACATGCTGC 58.899 50.000 30.10 17.01 43.97 5.25
80 81 0.250814 TGGTGTCATGACATGCTGCA 60.251 50.000 30.10 4.13 43.97 4.41
81 82 0.169672 GGTGTCATGACATGCTGCAC 59.830 55.000 30.10 15.62 43.97 4.57
82 83 0.169672 GTGTCATGACATGCTGCACC 59.830 55.000 30.10 11.97 43.97 5.01
83 84 1.300266 TGTCATGACATGCTGCACCG 61.300 55.000 24.56 1.25 36.21 4.94
84 85 1.003476 TCATGACATGCTGCACCGT 60.003 52.632 10.76 5.19 0.00 4.83
85 86 1.020861 TCATGACATGCTGCACCGTC 61.021 55.000 21.09 21.09 0.00 4.79
86 87 2.102438 ATGACATGCTGCACCGTCG 61.102 57.895 21.88 6.47 0.00 5.12
87 88 2.432456 GACATGCTGCACCGTCGA 60.432 61.111 15.61 0.00 0.00 4.20
88 89 2.730672 GACATGCTGCACCGTCGAC 61.731 63.158 15.61 5.18 0.00 4.20
89 90 3.490759 CATGCTGCACCGTCGACC 61.491 66.667 10.58 0.00 0.00 4.79
90 91 4.760047 ATGCTGCACCGTCGACCC 62.760 66.667 10.58 0.00 0.00 4.46
105 106 3.478509 TCGACCCCGAAAAAGAAAATCA 58.521 40.909 0.00 0.00 42.51 2.57
106 107 3.884091 TCGACCCCGAAAAAGAAAATCAA 59.116 39.130 0.00 0.00 42.51 2.57
107 108 4.338682 TCGACCCCGAAAAAGAAAATCAAA 59.661 37.500 0.00 0.00 42.51 2.69
108 109 5.044558 CGACCCCGAAAAAGAAAATCAAAA 58.955 37.500 0.00 0.00 38.22 2.44
109 110 5.174943 CGACCCCGAAAAAGAAAATCAAAAG 59.825 40.000 0.00 0.00 38.22 2.27
110 111 5.364778 ACCCCGAAAAAGAAAATCAAAAGG 58.635 37.500 0.00 0.00 0.00 3.11
111 112 5.104693 ACCCCGAAAAAGAAAATCAAAAGGT 60.105 36.000 0.00 0.00 0.00 3.50
112 113 5.236263 CCCCGAAAAAGAAAATCAAAAGGTG 59.764 40.000 0.00 0.00 0.00 4.00
113 114 5.236263 CCCGAAAAAGAAAATCAAAAGGTGG 59.764 40.000 0.00 0.00 0.00 4.61
114 115 6.045955 CCGAAAAAGAAAATCAAAAGGTGGA 58.954 36.000 0.00 0.00 0.00 4.02
115 116 6.536941 CCGAAAAAGAAAATCAAAAGGTGGAA 59.463 34.615 0.00 0.00 0.00 3.53
116 117 7.226523 CCGAAAAAGAAAATCAAAAGGTGGAAT 59.773 33.333 0.00 0.00 0.00 3.01
117 118 9.255304 CGAAAAAGAAAATCAAAAGGTGGAATA 57.745 29.630 0.00 0.00 0.00 1.75
120 121 9.764363 AAAAGAAAATCAAAAGGTGGAATAGAC 57.236 29.630 0.00 0.00 0.00 2.59
121 122 8.477419 AAGAAAATCAAAAGGTGGAATAGACA 57.523 30.769 0.00 0.00 0.00 3.41
122 123 7.886338 AGAAAATCAAAAGGTGGAATAGACAC 58.114 34.615 0.00 0.00 38.10 3.67
135 136 8.506168 GTGGAATAGACACCTATTTGAAATCA 57.494 34.615 0.00 0.00 43.59 2.57
136 137 8.616076 GTGGAATAGACACCTATTTGAAATCAG 58.384 37.037 0.00 0.00 43.59 2.90
137 138 7.283127 TGGAATAGACACCTATTTGAAATCAGC 59.717 37.037 0.00 0.00 43.59 4.26
138 139 7.500559 GGAATAGACACCTATTTGAAATCAGCT 59.499 37.037 0.00 0.00 43.59 4.24
139 140 8.814038 AATAGACACCTATTTGAAATCAGCTT 57.186 30.769 0.00 0.00 41.50 3.74
140 141 9.905713 AATAGACACCTATTTGAAATCAGCTTA 57.094 29.630 0.00 0.00 41.50 3.09
141 142 7.856145 AGACACCTATTTGAAATCAGCTTAG 57.144 36.000 0.00 0.00 0.00 2.18
142 143 6.317391 AGACACCTATTTGAAATCAGCTTAGC 59.683 38.462 0.00 0.00 0.00 3.09
143 144 5.358160 ACACCTATTTGAAATCAGCTTAGCC 59.642 40.000 0.00 0.00 0.00 3.93
144 145 4.576463 ACCTATTTGAAATCAGCTTAGCCG 59.424 41.667 0.00 0.00 0.00 5.52
145 146 2.919666 TTTGAAATCAGCTTAGCCGC 57.080 45.000 0.00 0.00 0.00 6.53
146 147 1.094785 TTGAAATCAGCTTAGCCGCC 58.905 50.000 0.00 0.00 0.00 6.13
147 148 1.089481 TGAAATCAGCTTAGCCGCCG 61.089 55.000 0.00 0.00 0.00 6.46
148 149 0.810031 GAAATCAGCTTAGCCGCCGA 60.810 55.000 0.00 0.00 0.00 5.54
149 150 0.392461 AAATCAGCTTAGCCGCCGAA 60.392 50.000 0.00 0.00 0.00 4.30
150 151 0.811616 AATCAGCTTAGCCGCCGAAG 60.812 55.000 0.00 0.00 0.00 3.79
151 152 1.961180 ATCAGCTTAGCCGCCGAAGT 61.961 55.000 0.00 0.00 0.00 3.01
152 153 1.741770 CAGCTTAGCCGCCGAAGTT 60.742 57.895 0.00 0.00 0.00 2.66
153 154 1.448013 AGCTTAGCCGCCGAAGTTC 60.448 57.895 0.00 0.00 0.00 3.01
154 155 1.740296 GCTTAGCCGCCGAAGTTCA 60.740 57.895 3.32 0.00 0.00 3.18
155 156 1.296056 GCTTAGCCGCCGAAGTTCAA 61.296 55.000 3.32 0.00 0.00 2.69
156 157 1.369625 CTTAGCCGCCGAAGTTCAAT 58.630 50.000 3.32 0.00 0.00 2.57
157 158 1.327764 CTTAGCCGCCGAAGTTCAATC 59.672 52.381 3.32 0.00 0.00 2.67
158 159 0.535335 TAGCCGCCGAAGTTCAATCT 59.465 50.000 3.32 0.00 0.00 2.40
159 160 1.021390 AGCCGCCGAAGTTCAATCTG 61.021 55.000 3.32 0.00 0.00 2.90
160 161 1.425428 CCGCCGAAGTTCAATCTGC 59.575 57.895 3.32 0.00 0.00 4.26
161 162 1.298157 CCGCCGAAGTTCAATCTGCA 61.298 55.000 3.32 0.00 0.00 4.41
162 163 0.729116 CGCCGAAGTTCAATCTGCAT 59.271 50.000 3.32 0.00 0.00 3.96
163 164 1.131126 CGCCGAAGTTCAATCTGCATT 59.869 47.619 3.32 0.00 0.00 3.56
164 165 2.789092 CGCCGAAGTTCAATCTGCATTC 60.789 50.000 3.32 0.00 0.00 2.67
165 166 2.162208 GCCGAAGTTCAATCTGCATTCA 59.838 45.455 3.32 0.00 0.00 2.57
166 167 3.366273 GCCGAAGTTCAATCTGCATTCAA 60.366 43.478 3.32 0.00 0.00 2.69
167 168 4.409570 CCGAAGTTCAATCTGCATTCAAG 58.590 43.478 3.32 0.00 0.00 3.02
168 169 3.850273 CGAAGTTCAATCTGCATTCAAGC 59.150 43.478 3.32 0.00 0.00 4.01
169 170 3.863142 AGTTCAATCTGCATTCAAGCC 57.137 42.857 0.00 0.00 0.00 4.35
170 171 3.159472 AGTTCAATCTGCATTCAAGCCA 58.841 40.909 0.00 0.00 0.00 4.75
171 172 3.767673 AGTTCAATCTGCATTCAAGCCAT 59.232 39.130 0.00 0.00 0.00 4.40
176 177 3.220507 TCTGCATTCAAGCCATTTTCG 57.779 42.857 0.00 0.00 0.00 3.46
177 178 2.557924 TCTGCATTCAAGCCATTTTCGT 59.442 40.909 0.00 0.00 0.00 3.85
180 181 3.740321 TGCATTCAAGCCATTTTCGTTTC 59.260 39.130 0.00 0.00 0.00 2.78
182 183 4.210955 GCATTCAAGCCATTTTCGTTTCAA 59.789 37.500 0.00 0.00 0.00 2.69
186 187 4.749099 TCAAGCCATTTTCGTTTCAATTGG 59.251 37.500 5.42 0.00 0.00 3.16
187 188 3.066380 AGCCATTTTCGTTTCAATTGGC 58.934 40.909 5.42 9.53 45.22 4.52
197 198 3.656559 GTTTCAATTGGCTGAAGCATGT 58.343 40.909 5.42 0.00 44.36 3.21
206 207 2.813754 GGCTGAAGCATGTTCAAGTGTA 59.186 45.455 4.43 0.00 44.36 2.90
208 209 3.365364 GCTGAAGCATGTTCAAGTGTACC 60.365 47.826 10.54 0.00 41.59 3.34
210 211 4.460263 TGAAGCATGTTCAAGTGTACCTT 58.540 39.130 7.87 0.00 0.00 3.50
211 212 5.616270 TGAAGCATGTTCAAGTGTACCTTA 58.384 37.500 7.87 0.00 0.00 2.69
215 216 4.994852 GCATGTTCAAGTGTACCTTAGTGA 59.005 41.667 0.00 0.00 0.00 3.41
216 217 5.643777 GCATGTTCAAGTGTACCTTAGTGAT 59.356 40.000 0.00 0.00 0.00 3.06
262 263 1.068055 GCCAGTGAAGCAAATCCACAG 60.068 52.381 0.00 0.00 33.53 3.66
263 264 2.507484 CCAGTGAAGCAAATCCACAGA 58.493 47.619 0.00 0.00 33.53 3.41
279 280 4.129380 CCACAGATGATTCGAAGCCAATA 58.871 43.478 11.45 0.00 0.00 1.90
286 287 7.219535 CAGATGATTCGAAGCCAATAAAAACTG 59.780 37.037 11.45 1.06 0.00 3.16
310 311 7.101054 TGAAATAAACATACCGTTAGTGCTCT 58.899 34.615 0.00 0.00 36.59 4.09
312 313 8.644318 AAATAAACATACCGTTAGTGCTCTAG 57.356 34.615 0.00 0.00 36.59 2.43
318 319 3.354467 ACCGTTAGTGCTCTAGCTTAGT 58.646 45.455 3.26 1.10 42.66 2.24
319 320 3.762823 ACCGTTAGTGCTCTAGCTTAGTT 59.237 43.478 3.26 0.00 42.66 2.24
323 324 6.094061 CGTTAGTGCTCTAGCTTAGTTTTCT 58.906 40.000 3.26 0.00 42.66 2.52
324 325 7.249147 CGTTAGTGCTCTAGCTTAGTTTTCTA 58.751 38.462 3.26 0.00 42.66 2.10
373 2128 9.110502 GGAGTAAACGAGGAGAAATGATAAAAT 57.889 33.333 0.00 0.00 0.00 1.82
401 2156 9.691362 GTATCTTTACACAATCCAACACATTTT 57.309 29.630 0.00 0.00 0.00 1.82
430 2185 6.605471 AGGTTGTACATCACTCATCAACTA 57.395 37.500 0.00 0.00 36.46 2.24
433 2188 7.550551 AGGTTGTACATCACTCATCAACTAATG 59.449 37.037 0.00 0.00 36.46 1.90
435 2190 8.935844 GTTGTACATCACTCATCAACTAATGAA 58.064 33.333 0.00 0.00 42.54 2.57
436 2191 9.671279 TTGTACATCACTCATCAACTAATGAAT 57.329 29.630 0.00 0.00 42.54 2.57
437 2192 9.317936 TGTACATCACTCATCAACTAATGAATC 57.682 33.333 0.00 0.00 42.54 2.52
438 2193 9.317936 GTACATCACTCATCAACTAATGAATCA 57.682 33.333 0.00 0.00 42.54 2.57
440 2195 8.890718 ACATCACTCATCAACTAATGAATCAAG 58.109 33.333 0.00 0.00 42.54 3.02
441 2196 7.312657 TCACTCATCAACTAATGAATCAAGC 57.687 36.000 0.00 0.00 42.54 4.01
442 2197 7.108194 TCACTCATCAACTAATGAATCAAGCT 58.892 34.615 0.00 0.00 42.54 3.74
443 2198 7.609146 TCACTCATCAACTAATGAATCAAGCTT 59.391 33.333 0.00 0.00 42.54 3.74
444 2199 8.886719 CACTCATCAACTAATGAATCAAGCTTA 58.113 33.333 0.00 0.00 42.54 3.09
445 2200 9.624373 ACTCATCAACTAATGAATCAAGCTTAT 57.376 29.630 0.00 0.00 42.54 1.73
470 2225 6.548441 TTGTTAAACCATTCTGTAACGAGG 57.452 37.500 0.00 0.00 30.61 4.63
471 2226 5.856156 TGTTAAACCATTCTGTAACGAGGA 58.144 37.500 0.00 0.00 30.61 3.71
472 2227 5.929992 TGTTAAACCATTCTGTAACGAGGAG 59.070 40.000 0.00 0.00 30.61 3.69
479 2234 6.095160 ACCATTCTGTAACGAGGAGTACTTAG 59.905 42.308 0.00 0.00 0.00 2.18
484 2239 6.881065 TCTGTAACGAGGAGTACTTAGCTAAA 59.119 38.462 7.74 0.00 0.00 1.85
505 2260 8.291740 GCTAAAGCAGGACTAGTAGTAGATTAC 58.708 40.741 11.68 0.00 41.59 1.89
523 2278 7.932120 AGATTACAGTGTATCAAATACTCGC 57.068 36.000 3.28 0.00 36.70 5.03
542 2297 4.613944 TCGCCCTGTATAAGATACGTTTG 58.386 43.478 0.00 0.00 0.00 2.93
546 2301 6.220930 GCCCTGTATAAGATACGTTTGATGA 58.779 40.000 0.00 0.00 0.00 2.92
562 2317 6.037062 CGTTTGATGAATATACTGAGCACCAA 59.963 38.462 0.00 0.00 0.00 3.67
648 2403 2.202479 GACGAATTTGCTGCCGCC 60.202 61.111 0.00 0.00 34.43 6.13
698 2456 1.031029 AGGCTCGGTCGGTCTAGAAC 61.031 60.000 0.00 0.00 0.00 3.01
871 2671 2.359975 CCTGGTCAAACCTCCGCC 60.360 66.667 0.00 0.00 39.58 6.13
928 2762 2.041928 CCTCTGCTCCCCTTCCCT 59.958 66.667 0.00 0.00 0.00 4.20
929 2763 2.069430 CCTCTGCTCCCCTTCCCTC 61.069 68.421 0.00 0.00 0.00 4.30
984 2818 4.292178 CCCCGCCGCAGATCTCTC 62.292 72.222 0.00 0.00 0.00 3.20
985 2819 4.292178 CCCGCCGCAGATCTCTCC 62.292 72.222 0.00 0.00 0.00 3.71
986 2820 3.222855 CCGCCGCAGATCTCTCCT 61.223 66.667 0.00 0.00 0.00 3.69
987 2821 2.334653 CGCCGCAGATCTCTCCTC 59.665 66.667 0.00 0.00 0.00 3.71
988 2822 2.733945 GCCGCAGATCTCTCCTCC 59.266 66.667 0.00 0.00 0.00 4.30
989 2823 2.866726 GCCGCAGATCTCTCCTCCC 61.867 68.421 0.00 0.00 0.00 4.30
990 2824 2.206536 CCGCAGATCTCTCCTCCCC 61.207 68.421 0.00 0.00 0.00 4.81
991 2825 1.456518 CGCAGATCTCTCCTCCCCA 60.457 63.158 0.00 0.00 0.00 4.96
992 2826 1.045350 CGCAGATCTCTCCTCCCCAA 61.045 60.000 0.00 0.00 0.00 4.12
993 2827 0.467804 GCAGATCTCTCCTCCCCAAC 59.532 60.000 0.00 0.00 0.00 3.77
994 2828 1.127343 CAGATCTCTCCTCCCCAACC 58.873 60.000 0.00 0.00 0.00 3.77
995 2829 0.030603 AGATCTCTCCTCCCCAACCC 60.031 60.000 0.00 0.00 0.00 4.11
996 2830 1.004891 ATCTCTCCTCCCCAACCCC 59.995 63.158 0.00 0.00 0.00 4.95
997 2831 2.898472 ATCTCTCCTCCCCAACCCCG 62.898 65.000 0.00 0.00 0.00 5.73
1002 2836 4.820744 CTCCCCAACCCCGCCATG 62.821 72.222 0.00 0.00 0.00 3.66
1126 3308 3.443479 AGATCCTCCTCGGGGCCT 61.443 66.667 0.84 0.00 0.00 5.19
1176 3358 3.507009 GACCTCGGAGTCGTCGGG 61.507 72.222 4.02 0.00 37.69 5.14
1218 3403 3.984241 GGCGACGAAGATGACGAG 58.016 61.111 0.00 0.00 34.70 4.18
1244 3429 0.617413 TACGAGGAGGACGAGGAAGT 59.383 55.000 0.00 0.00 34.70 3.01
1525 3713 3.059982 CCAAGAGGTGAGACGCCA 58.940 61.111 4.21 0.00 36.32 5.69
1526 3714 1.079543 CCAAGAGGTGAGACGCCAG 60.080 63.158 4.21 0.00 36.32 4.85
1536 3724 4.878774 GACGCCAGTCTCAGTCTG 57.121 61.111 0.00 0.00 43.80 3.51
1549 3737 1.971357 TCAGTCTGAGAACCCACTTCC 59.029 52.381 0.00 0.00 0.00 3.46
1550 3738 0.969894 AGTCTGAGAACCCACTTCCG 59.030 55.000 0.00 0.00 0.00 4.30
1594 3788 4.213482 GTCTTTAGGGATTCGCGCAATATT 59.787 41.667 8.75 0.00 0.00 1.28
1711 3905 4.627467 CGAAAGTTGTGGAATCTCGAATCT 59.373 41.667 0.00 0.00 0.00 2.40
1712 3906 5.805486 CGAAAGTTGTGGAATCTCGAATCTA 59.195 40.000 0.00 0.00 0.00 1.98
1713 3907 6.020281 CGAAAGTTGTGGAATCTCGAATCTAG 60.020 42.308 0.00 0.00 0.00 2.43
1794 3989 6.148150 CCTGATTGATTGAAACAAAACATGGG 59.852 38.462 0.00 0.00 0.00 4.00
1797 3992 5.867903 TGATTGAAACAAAACATGGGACT 57.132 34.783 0.00 0.00 0.00 3.85
1815 4010 3.468071 ACTGGGGACTGTCTATGTACA 57.532 47.619 7.85 0.00 38.18 2.90
1816 4011 3.786553 ACTGGGGACTGTCTATGTACAA 58.213 45.455 7.85 0.00 38.18 2.41
1818 4013 4.783227 ACTGGGGACTGTCTATGTACAATT 59.217 41.667 7.85 0.00 38.18 2.32
1819 4014 5.250774 ACTGGGGACTGTCTATGTACAATTT 59.749 40.000 7.85 0.00 38.18 1.82
1820 4015 6.134535 TGGGGACTGTCTATGTACAATTTT 57.865 37.500 7.85 0.00 0.00 1.82
1821 4016 5.943416 TGGGGACTGTCTATGTACAATTTTG 59.057 40.000 7.85 0.00 0.00 2.44
1822 4017 6.177610 GGGGACTGTCTATGTACAATTTTGA 58.822 40.000 7.85 0.00 0.00 2.69
1823 4018 6.093633 GGGGACTGTCTATGTACAATTTTGAC 59.906 42.308 7.85 1.05 0.00 3.18
1934 4224 4.201950 GCTGGTGAATTGGTGATGTATGTC 60.202 45.833 0.00 0.00 0.00 3.06
1941 4231 6.818142 TGAATTGGTGATGTATGTCAGTACAG 59.182 38.462 0.00 0.00 39.49 2.74
1942 4232 5.738619 TTGGTGATGTATGTCAGTACAGT 57.261 39.130 0.00 0.00 39.49 3.55
1949 4239 9.366216 GTGATGTATGTCAGTACAGTATTTTCA 57.634 33.333 0.00 0.00 39.49 2.69
1958 4248 8.726988 GTCAGTACAGTATTTTCAGGCAATAAA 58.273 33.333 0.00 0.00 0.00 1.40
1965 4255 7.593273 CAGTATTTTCAGGCAATAAAAACGACA 59.407 33.333 0.00 0.00 0.00 4.35
1985 4275 9.457436 AACGACATAACCCTTATAATTTGTTCT 57.543 29.630 0.00 0.00 0.00 3.01
2091 4381 1.231963 ACCTTTTGTTGGAGGGAGGT 58.768 50.000 0.00 0.00 37.36 3.85
2097 4387 0.984230 TGTTGGAGGGAGGTCACATC 59.016 55.000 0.00 0.00 0.00 3.06
2144 4434 9.742144 TGTAATTTAGTATAGCCTTTTTCACCA 57.258 29.630 0.00 0.00 0.00 4.17
2163 4456 7.385778 TCACCAATGGTAATTTAGTACAAGC 57.614 36.000 3.85 0.00 32.11 4.01
2192 4485 7.748031 CAGTCTATGCAAGTTAGTTAGTCTG 57.252 40.000 0.00 0.00 0.00 3.51
2262 4555 4.067192 TCTGGATGTGTCTTTGTCATGTG 58.933 43.478 0.00 0.00 0.00 3.21
2335 4629 2.059490 TGTGCCTTTAGGGGTTAGTGT 58.941 47.619 0.00 0.00 35.18 3.55
2399 4693 7.622713 TGAAACATTTTAGGATCATGGCAAAT 58.377 30.769 0.00 0.00 0.00 2.32
2447 4741 2.636830 AGAAAGATGCGCTACATTGCT 58.363 42.857 9.73 0.00 39.84 3.91
2638 4932 2.771943 AGGAATGGTCGCCAGAAATAGA 59.228 45.455 4.90 0.00 36.75 1.98
2662 4956 9.860898 AGAAAATGCTTAGGTATTCAAATGAAC 57.139 29.630 0.00 0.00 36.80 3.18
2673 4967 1.195900 TCAAATGAACGCGTGCCTAAC 59.804 47.619 14.98 1.05 0.00 2.34
2689 4983 5.067805 GTGCCTAACTGCCTATGCTATTTTT 59.932 40.000 0.00 0.00 38.71 1.94
2721 5015 1.880027 AGAATTTCCAACCGCTGACAC 59.120 47.619 0.00 0.00 0.00 3.67
2727 5021 0.029300 CCAACCGCTGACACTGTTTG 59.971 55.000 0.00 0.00 0.00 2.93
2782 5076 7.490962 TTATGGAATACCTTTTATGTCTGCG 57.509 36.000 0.00 0.00 37.04 5.18
2800 5094 6.651643 TGTCTGCGTATGGTTACTAAATTTGT 59.348 34.615 0.00 0.00 0.00 2.83
2827 5122 5.344743 TTTTTGGCATGTTAACTCCAACA 57.655 34.783 19.72 14.16 42.32 3.33
2859 5154 1.923356 AACCCGAAAATGACAGGCAT 58.077 45.000 0.00 0.00 39.43 4.40
2909 5204 4.308265 AGCGAAGGTGAGAAGTAGAAAAC 58.692 43.478 0.00 0.00 36.17 2.43
2960 5255 0.107654 ATGAGCCCTTCAGCGGTAAC 60.108 55.000 0.00 0.00 39.68 2.50
3039 5334 2.263077 GCCATCAGTACAGTCTTGACG 58.737 52.381 0.00 0.00 0.00 4.35
3100 5395 2.799917 GCATTCCGCGTTAGAGATCAGT 60.800 50.000 4.92 0.00 0.00 3.41
3118 5413 4.986783 TCAGTGGAGTGAAAGTAGAGAGA 58.013 43.478 0.00 0.00 0.00 3.10
3205 5501 0.247736 AGACAGGATCACCTTGACGC 59.752 55.000 0.00 0.00 45.36 5.19
3286 5590 2.094675 GTTGTTGGATATGGTGCAGCT 58.905 47.619 18.08 5.31 30.71 4.24
3287 5591 1.753930 TGTTGGATATGGTGCAGCTG 58.246 50.000 18.08 10.11 30.71 4.24
3288 5592 0.383231 GTTGGATATGGTGCAGCTGC 59.617 55.000 31.89 31.89 42.50 5.25
3301 5605 0.689055 CAGCTGCAGCCCCTATATCA 59.311 55.000 34.39 0.00 43.38 2.15
3302 5606 0.689623 AGCTGCAGCCCCTATATCAC 59.310 55.000 34.39 3.09 43.38 3.06
3425 5754 3.727948 TCGAAAAGGAGGTTATACCCCT 58.272 45.455 0.00 0.00 39.75 4.79
3430 5759 0.401541 GGAGGTTATACCCCTGGCCT 60.402 60.000 3.32 0.00 39.75 5.19
3438 5767 4.559063 CCCCTGGCCTCTGCATCG 62.559 72.222 3.32 0.00 40.13 3.84
3507 5836 2.364970 CTCCTATCTCTGCACCTGGAAG 59.635 54.545 0.00 0.00 0.00 3.46
3527 5856 3.016736 AGTGCACACAGCCCATTATTAC 58.983 45.455 21.04 0.00 44.83 1.89
3529 5858 2.014128 GCACACAGCCCATTATTACGT 58.986 47.619 0.00 0.00 37.23 3.57
3600 5929 5.982516 CCAACAGCTTGAGACTCATACTATC 59.017 44.000 5.87 0.00 0.00 2.08
3611 5940 7.175816 TGAGACTCATACTATCTGTATTCTGCC 59.824 40.741 0.00 0.00 39.66 4.85
3616 5945 8.753497 TCATACTATCTGTATTCTGCCGATAT 57.247 34.615 0.00 0.00 39.66 1.63
3853 6184 6.586463 TGCAGATTTCGTAGTTACTCAAAGAG 59.414 38.462 0.00 0.00 35.52 2.85
3856 6187 7.968956 CAGATTTCGTAGTTACTCAAAGAGCTA 59.031 37.037 0.00 0.00 32.04 3.32
3857 6188 8.521176 AGATTTCGTAGTTACTCAAAGAGCTAA 58.479 33.333 0.00 0.00 32.04 3.09
3888 6219 4.761739 TGGTTTTCCATGAGTGATGAGTTC 59.238 41.667 0.00 0.00 46.22 3.01
3928 6263 7.336679 TGCATATTGTTACTACACTGCAGATTT 59.663 33.333 23.35 6.21 38.48 2.17
3929 6264 8.184192 GCATATTGTTACTACACTGCAGATTTT 58.816 33.333 23.35 3.49 35.81 1.82
3930 6265 9.494479 CATATTGTTACTACACTGCAGATTTTG 57.506 33.333 23.35 10.85 32.98 2.44
3931 6266 6.935741 TTGTTACTACACTGCAGATTTTGT 57.064 33.333 23.35 16.59 32.98 2.83
3955 6290 5.773091 AGTTTTTCAAAGAACTCCCCCTTA 58.227 37.500 0.00 0.00 30.64 2.69
3971 6306 4.079787 CCCCCTTAGATTTTCCATGAGTGA 60.080 45.833 0.00 0.00 0.00 3.41
3982 6317 3.390135 TCCATGAGTGACGAGTTTTGTC 58.610 45.455 0.00 0.00 36.88 3.18
3995 6330 6.084925 ACGAGTTTTGTCTTCTACAGATACG 58.915 40.000 0.00 0.00 39.87 3.06
4045 6380 8.800332 TGTAGTTATTCGAAGTACTTCCTCTTT 58.200 33.333 26.12 11.70 36.27 2.52
4061 6396 3.954258 CCTCTTTGGTTTTCCTTGAGTGT 59.046 43.478 0.00 0.00 41.38 3.55
4063 6398 4.594970 TCTTTGGTTTTCCTTGAGTGTCA 58.405 39.130 0.00 0.00 41.38 3.58
4074 6409 4.220821 TCCTTGAGTGTCAGGTCTTGTATC 59.779 45.833 0.00 0.00 0.00 2.24
4295 6630 5.977129 AGGTTTTCTTTGTACAGCAAATTCG 59.023 36.000 0.00 0.00 45.00 3.34
4339 6674 2.448453 TGATGCCATGCTCATTTGACA 58.552 42.857 0.00 0.00 0.00 3.58
4349 6684 3.890756 TGCTCATTTGACACCATGTTCTT 59.109 39.130 0.00 0.00 0.00 2.52
4401 6739 7.261325 TGAATTCTACATGTCTACTTGCTCTC 58.739 38.462 0.00 0.00 0.00 3.20
4403 6741 6.590234 TTCTACATGTCTACTTGCTCTCAA 57.410 37.500 0.00 0.00 0.00 3.02
4404 6742 5.955488 TCTACATGTCTACTTGCTCTCAAC 58.045 41.667 0.00 0.00 0.00 3.18
4408 6746 4.607293 TGTCTACTTGCTCTCAACACAT 57.393 40.909 0.00 0.00 0.00 3.21
4409 6747 4.560128 TGTCTACTTGCTCTCAACACATC 58.440 43.478 0.00 0.00 0.00 3.06
4410 6748 3.929610 GTCTACTTGCTCTCAACACATCC 59.070 47.826 0.00 0.00 0.00 3.51
4411 6749 2.191128 ACTTGCTCTCAACACATCCC 57.809 50.000 0.00 0.00 0.00 3.85
4412 6750 1.701847 ACTTGCTCTCAACACATCCCT 59.298 47.619 0.00 0.00 0.00 4.20
4413 6751 2.289945 ACTTGCTCTCAACACATCCCTC 60.290 50.000 0.00 0.00 0.00 4.30
4414 6752 0.615331 TGCTCTCAACACATCCCTCC 59.385 55.000 0.00 0.00 0.00 4.30
4415 6753 0.615331 GCTCTCAACACATCCCTCCA 59.385 55.000 0.00 0.00 0.00 3.86
4419 6757 2.239654 TCTCAACACATCCCTCCATTCC 59.760 50.000 0.00 0.00 0.00 3.01
4421 6759 2.378208 TCAACACATCCCTCCATTCCAA 59.622 45.455 0.00 0.00 0.00 3.53
4422 6760 3.164268 CAACACATCCCTCCATTCCAAA 58.836 45.455 0.00 0.00 0.00 3.28
4423 6761 3.541242 ACACATCCCTCCATTCCAAAA 57.459 42.857 0.00 0.00 0.00 2.44
4425 6763 5.205517 ACACATCCCTCCATTCCAAAATA 57.794 39.130 0.00 0.00 0.00 1.40
4426 6764 5.203528 ACACATCCCTCCATTCCAAAATAG 58.796 41.667 0.00 0.00 0.00 1.73
4427 6765 5.044179 ACACATCCCTCCATTCCAAAATAGA 60.044 40.000 0.00 0.00 0.00 1.98
4431 6769 5.694995 TCCCTCCATTCCAAAATAGATGAC 58.305 41.667 0.00 0.00 0.00 3.06
4432 6770 5.433051 TCCCTCCATTCCAAAATAGATGACT 59.567 40.000 0.00 0.00 0.00 3.41
4433 6771 5.767168 CCCTCCATTCCAAAATAGATGACTC 59.233 44.000 0.00 0.00 0.00 3.36
4434 6772 6.359804 CCTCCATTCCAAAATAGATGACTCA 58.640 40.000 0.00 0.00 0.00 3.41
4435 6773 6.830324 CCTCCATTCCAAAATAGATGACTCAA 59.170 38.462 0.00 0.00 0.00 3.02
4436 6774 7.201767 CCTCCATTCCAAAATAGATGACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
4437 6775 7.405292 TCCATTCCAAAATAGATGACTCAACT 58.595 34.615 0.00 0.00 0.00 3.16
4438 6776 7.890127 TCCATTCCAAAATAGATGACTCAACTT 59.110 33.333 0.00 0.00 0.00 2.66
4439 6777 8.526147 CCATTCCAAAATAGATGACTCAACTTT 58.474 33.333 0.00 0.00 0.00 2.66
4440 6778 9.350357 CATTCCAAAATAGATGACTCAACTTTG 57.650 33.333 0.00 0.00 0.00 2.77
4441 6779 8.463930 TTCCAAAATAGATGACTCAACTTTGT 57.536 30.769 0.00 0.00 0.00 2.83
4442 6780 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4443 6781 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4444 6782 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4488 6826 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
4489 6827 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
4490 6828 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4491 6829 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4492 6830 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4493 6831 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4494 6832 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4495 6833 5.989477 TGAGTCATCTATTTTGGAACGGAT 58.011 37.500 0.00 0.00 0.00 4.18
4496 6834 5.817296 TGAGTCATCTATTTTGGAACGGATG 59.183 40.000 0.00 0.00 32.78 3.51
4497 6835 5.126067 AGTCATCTATTTTGGAACGGATGG 58.874 41.667 0.00 0.00 32.58 3.51
4546 6884 9.044150 CCTGATTTTTCTTGATCATCTAGAGAC 57.956 37.037 0.00 0.00 30.53 3.36
4587 6925 6.238130 GGTCTTTTCCTATTCAATCTACACGC 60.238 42.308 0.00 0.00 0.00 5.34
4600 6938 5.909621 ATCTACACGCCAGAGTTTACTTA 57.090 39.130 0.00 0.00 0.00 2.24
4628 6966 9.862585 GTTTCATTTTTGGCTATGTTAACTTTG 57.137 29.630 7.22 2.98 0.00 2.77
4629 6967 9.606631 TTTCATTTTTGGCTATGTTAACTTTGT 57.393 25.926 7.22 0.00 0.00 2.83
4630 6968 9.606631 TTCATTTTTGGCTATGTTAACTTTGTT 57.393 25.926 7.22 0.00 0.00 2.83
4631 6969 9.255304 TCATTTTTGGCTATGTTAACTTTGTTC 57.745 29.630 7.22 0.62 0.00 3.18
4632 6970 8.495148 CATTTTTGGCTATGTTAACTTTGTTCC 58.505 33.333 7.22 1.84 0.00 3.62
4633 6971 6.716934 TTTGGCTATGTTAACTTTGTTCCA 57.283 33.333 7.22 4.31 0.00 3.53
4634 6972 6.716934 TTGGCTATGTTAACTTTGTTCCAA 57.283 33.333 7.22 9.61 0.00 3.53
4635 6973 6.909550 TGGCTATGTTAACTTTGTTCCAAT 57.090 33.333 7.22 0.00 0.00 3.16
4676 7014 5.918576 GGTAACTGTTTCTTTGGTTACATGC 59.081 40.000 14.03 0.00 43.05 4.06
4728 7069 1.540267 CAGCAGCTGAAGATTGCAACT 59.460 47.619 20.43 0.00 40.22 3.16
4737 7078 1.531423 AGATTGCAACTGGACAGCTG 58.469 50.000 13.48 13.48 0.00 4.24
4842 7183 2.352127 GCAACAACAATCTCTTCTGGCC 60.352 50.000 0.00 0.00 0.00 5.36
4851 7192 3.123620 CTTCTGGCCGCTCAGCAC 61.124 66.667 0.00 0.00 34.91 4.40
4866 7207 2.039405 GCACCTTCAGCAGCTCCAG 61.039 63.158 0.00 0.00 0.00 3.86
4919 7260 4.712425 GCAGCAGCAACGCCTTGG 62.712 66.667 0.00 0.00 41.58 3.61
5071 7436 2.202676 GGAGCGAGCCGTGAGAAG 60.203 66.667 0.00 0.00 0.00 2.85
5113 7478 8.213679 ACATGTCAGTTGCCAGTAATAATAGAT 58.786 33.333 0.00 0.00 0.00 1.98
5127 7492 8.965172 AGTAATAATAGATTTGCGTTGTACTCG 58.035 33.333 0.00 0.40 0.00 4.18
5146 7511 2.101380 GCCTGAGTCGAGTCGAGC 59.899 66.667 17.12 11.78 36.23 5.03
5235 7600 1.648467 GACCCCATTCAGTCGCAAGC 61.648 60.000 0.00 0.00 37.18 4.01
5281 7646 4.767928 AGAGTGTGAGTACTTCTTACCAGG 59.232 45.833 0.00 0.00 32.58 4.45
5338 7703 0.249280 GTTGGTGCCCGAAACCTTTG 60.249 55.000 3.34 0.00 38.60 2.77
5347 7712 3.242641 GCCCGAAACCTTTGTCGAATATC 60.243 47.826 0.00 0.00 39.64 1.63
5379 7757 4.264253 TGATAGTTGAAGCTGAACCATGG 58.736 43.478 11.19 11.19 0.00 3.66
5494 7872 4.032703 ACGCATAGCCTAAATTTTGCTG 57.967 40.909 19.53 10.82 36.57 4.41
5506 7884 7.092716 CCTAAATTTTGCTGCTGAGTTAATGT 58.907 34.615 0.00 0.00 0.00 2.71
5511 7889 1.399791 GCTGCTGAGTTAATGTCCTGC 59.600 52.381 0.00 0.00 0.00 4.85
5512 7890 2.703416 CTGCTGAGTTAATGTCCTGCA 58.297 47.619 0.00 0.00 0.00 4.41
5514 7892 3.485394 TGCTGAGTTAATGTCCTGCAAA 58.515 40.909 0.00 0.00 0.00 3.68
5515 7893 4.081406 TGCTGAGTTAATGTCCTGCAAAT 58.919 39.130 0.00 0.00 0.00 2.32
5517 7895 4.676196 GCTGAGTTAATGTCCTGCAAATGG 60.676 45.833 0.00 0.00 0.00 3.16
5518 7896 4.661222 TGAGTTAATGTCCTGCAAATGGA 58.339 39.130 0.00 0.00 0.00 3.41
5519 7897 4.701651 TGAGTTAATGTCCTGCAAATGGAG 59.298 41.667 0.00 0.00 33.78 3.86
5540 7918 7.440198 TGGAGTATATCTCTTTCAGCAAGATG 58.560 38.462 0.00 0.00 40.95 2.90
5573 7951 0.388907 CCAACATTTGCAGCCTTCCG 60.389 55.000 0.00 0.00 0.00 4.30
5633 8012 1.089920 GCGTGAAGATGAAGGCATGT 58.910 50.000 0.00 0.00 34.11 3.21
5636 8015 2.094894 CGTGAAGATGAAGGCATGTCAC 59.905 50.000 0.00 0.00 39.98 3.67
5650 8029 1.070786 GTCACTCGACCAAAGGGCA 59.929 57.895 0.00 0.00 37.90 5.36
5652 8031 2.032681 ACTCGACCAAAGGGCAGC 59.967 61.111 0.00 0.00 37.90 5.25
5653 8032 2.348998 CTCGACCAAAGGGCAGCT 59.651 61.111 0.00 0.00 37.90 4.24
5655 8034 2.747855 CGACCAAAGGGCAGCTCC 60.748 66.667 0.00 0.00 37.90 4.70
5657 8036 4.351054 ACCAAAGGGCAGCTCCGG 62.351 66.667 0.00 0.00 37.90 5.14
5709 8093 7.946655 AAAATCGATCGATGTACATACATGT 57.053 32.000 29.99 7.98 46.20 3.21
5713 8097 9.471084 AATCGATCGATGTACATACATGTAAAA 57.529 29.630 29.99 0.00 46.20 1.52
5714 8098 8.502161 TCGATCGATGTACATACATGTAAAAG 57.498 34.615 15.15 5.78 46.20 2.27
5756 8140 0.671251 TACCAAGCAACCAAAAGGCG 59.329 50.000 0.00 0.00 0.00 5.52
5775 8159 2.744166 GCGGGGAGGGTACAAGAATAAC 60.744 54.545 0.00 0.00 0.00 1.89
5812 8196 7.557358 ACCAATGTACAAATATGAATCAGAGCA 59.443 33.333 0.00 0.00 0.00 4.26
5829 8213 1.443802 GCATCCGGCTAATTAGGCTC 58.556 55.000 29.79 13.98 45.70 4.70
5838 8222 3.306088 GGCTAATTAGGCTCAGCGACATA 60.306 47.826 27.07 0.00 44.61 2.29
5850 8235 3.119291 CAGCGACATAATCACTCCTGTC 58.881 50.000 0.00 0.00 35.72 3.51
5914 8303 2.414785 AAATTCGCCATCCGCCCAC 61.415 57.895 0.00 0.00 36.73 4.61
5948 8337 0.656785 TACCACAAACAACGCCGTTC 59.343 50.000 0.00 0.00 0.00 3.95
5968 8357 1.583054 GGTAGTAGCCGCTCCAAATG 58.417 55.000 0.00 0.00 0.00 2.32
6017 8406 3.903714 CCATGTAGGATGTAGGGTGATGA 59.096 47.826 0.00 0.00 41.22 2.92
6018 8407 4.533707 CCATGTAGGATGTAGGGTGATGAT 59.466 45.833 0.00 0.00 41.22 2.45
6019 8408 5.721480 CCATGTAGGATGTAGGGTGATGATA 59.279 44.000 0.00 0.00 41.22 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.309612 GGCCAAATATACAACGGCGG 59.690 55.000 13.24 0.00 43.93 6.13
1 2 1.002900 CAGGCCAAATATACAACGGCG 60.003 52.381 5.01 4.80 43.93 6.46
2 3 1.269051 GCAGGCCAAATATACAACGGC 60.269 52.381 5.01 0.00 42.21 5.68
6 7 5.518848 CAGAATGCAGGCCAAATATACAA 57.481 39.130 5.01 0.00 0.00 2.41
22 23 4.489810 AGTGTACGAGAAGAAGCAGAATG 58.510 43.478 0.00 0.00 40.87 2.67
23 24 4.218635 TGAGTGTACGAGAAGAAGCAGAAT 59.781 41.667 0.00 0.00 0.00 2.40
24 25 3.568430 TGAGTGTACGAGAAGAAGCAGAA 59.432 43.478 0.00 0.00 0.00 3.02
25 26 3.146847 TGAGTGTACGAGAAGAAGCAGA 58.853 45.455 0.00 0.00 0.00 4.26
26 27 3.560902 TGAGTGTACGAGAAGAAGCAG 57.439 47.619 0.00 0.00 0.00 4.24
27 28 5.399858 GTTATGAGTGTACGAGAAGAAGCA 58.600 41.667 0.00 0.00 0.00 3.91
28 29 4.799428 GGTTATGAGTGTACGAGAAGAAGC 59.201 45.833 0.00 0.00 0.00 3.86
29 30 5.950883 TGGTTATGAGTGTACGAGAAGAAG 58.049 41.667 0.00 0.00 0.00 2.85
30 31 5.970317 TGGTTATGAGTGTACGAGAAGAA 57.030 39.130 0.00 0.00 0.00 2.52
31 32 5.970317 TTGGTTATGAGTGTACGAGAAGA 57.030 39.130 0.00 0.00 0.00 2.87
32 33 5.062308 GCTTTGGTTATGAGTGTACGAGAAG 59.938 44.000 0.00 0.00 0.00 2.85
33 34 4.927425 GCTTTGGTTATGAGTGTACGAGAA 59.073 41.667 0.00 0.00 0.00 2.87
34 35 4.491676 GCTTTGGTTATGAGTGTACGAGA 58.508 43.478 0.00 0.00 0.00 4.04
35 36 3.617263 GGCTTTGGTTATGAGTGTACGAG 59.383 47.826 0.00 0.00 0.00 4.18
36 37 3.007074 TGGCTTTGGTTATGAGTGTACGA 59.993 43.478 0.00 0.00 0.00 3.43
37 38 3.331150 TGGCTTTGGTTATGAGTGTACG 58.669 45.455 0.00 0.00 0.00 3.67
38 39 5.699097 TTTGGCTTTGGTTATGAGTGTAC 57.301 39.130 0.00 0.00 0.00 2.90
39 40 5.184864 CCATTTGGCTTTGGTTATGAGTGTA 59.815 40.000 0.00 0.00 0.00 2.90
40 41 4.021192 CCATTTGGCTTTGGTTATGAGTGT 60.021 41.667 0.00 0.00 0.00 3.55
41 42 4.021192 ACCATTTGGCTTTGGTTATGAGTG 60.021 41.667 0.00 0.00 43.73 3.51
42 43 4.021192 CACCATTTGGCTTTGGTTATGAGT 60.021 41.667 4.21 0.00 43.73 3.41
43 44 4.021192 ACACCATTTGGCTTTGGTTATGAG 60.021 41.667 4.21 0.00 43.73 2.90
44 45 3.900601 ACACCATTTGGCTTTGGTTATGA 59.099 39.130 4.21 0.00 43.73 2.15
45 46 4.244862 GACACCATTTGGCTTTGGTTATG 58.755 43.478 4.21 0.00 43.73 1.90
46 47 3.900601 TGACACCATTTGGCTTTGGTTAT 59.099 39.130 4.21 0.00 43.73 1.89
47 48 3.300388 TGACACCATTTGGCTTTGGTTA 58.700 40.909 4.21 0.00 43.73 2.85
48 49 2.114616 TGACACCATTTGGCTTTGGTT 58.885 42.857 4.21 0.00 43.73 3.67
50 51 2.299582 TCATGACACCATTTGGCTTTGG 59.700 45.455 0.00 0.34 39.32 3.28
51 52 3.243805 TGTCATGACACCATTTGGCTTTG 60.244 43.478 24.56 0.00 39.32 2.77
52 53 2.964464 TGTCATGACACCATTTGGCTTT 59.036 40.909 24.56 0.00 39.32 3.51
53 54 2.596346 TGTCATGACACCATTTGGCTT 58.404 42.857 24.56 0.00 39.32 4.35
54 55 2.291209 TGTCATGACACCATTTGGCT 57.709 45.000 24.56 0.00 39.32 4.75
55 56 2.883574 CATGTCATGACACCATTTGGC 58.116 47.619 30.09 0.00 45.05 4.52
56 57 2.494471 AGCATGTCATGACACCATTTGG 59.506 45.455 30.09 14.12 45.05 3.28
57 58 3.507786 CAGCATGTCATGACACCATTTG 58.492 45.455 30.09 23.25 45.05 2.32
58 59 2.094390 GCAGCATGTCATGACACCATTT 60.094 45.455 30.09 11.89 45.05 2.32
59 60 1.475280 GCAGCATGTCATGACACCATT 59.525 47.619 30.09 12.29 45.05 3.16
60 61 1.100510 GCAGCATGTCATGACACCAT 58.899 50.000 30.09 15.66 45.05 3.55
61 62 0.250814 TGCAGCATGTCATGACACCA 60.251 50.000 30.09 17.96 45.05 4.17
62 63 0.169672 GTGCAGCATGTCATGACACC 59.830 55.000 30.09 22.41 45.05 4.16
63 64 0.169672 GGTGCAGCATGTCATGACAC 59.830 55.000 30.09 18.41 45.05 3.67
64 65 1.300266 CGGTGCAGCATGTCATGACA 61.300 55.000 29.67 29.67 46.44 3.58
65 66 1.300971 ACGGTGCAGCATGTCATGAC 61.301 55.000 19.27 19.27 39.31 3.06
66 67 1.003476 ACGGTGCAGCATGTCATGA 60.003 52.632 17.24 0.00 39.31 3.07
67 68 1.426621 GACGGTGCAGCATGTCATG 59.573 57.895 20.25 8.56 39.31 3.07
68 69 2.102438 CGACGGTGCAGCATGTCAT 61.102 57.895 23.09 0.52 39.31 3.06
69 70 2.738139 CGACGGTGCAGCATGTCA 60.738 61.111 23.09 0.00 39.31 3.58
70 71 2.432456 TCGACGGTGCAGCATGTC 60.432 61.111 17.33 14.43 39.31 3.06
71 72 2.738521 GTCGACGGTGCAGCATGT 60.739 61.111 17.33 6.42 39.31 3.21
72 73 3.490759 GGTCGACGGTGCAGCATG 61.491 66.667 17.33 4.68 40.87 4.06
73 74 4.760047 GGGTCGACGGTGCAGCAT 62.760 66.667 17.33 0.00 0.00 3.79
78 79 4.668118 TTTCGGGGTCGACGGTGC 62.668 66.667 9.92 0.00 45.92 5.01
79 80 1.562575 CTTTTTCGGGGTCGACGGTG 61.563 60.000 9.92 1.13 45.92 4.94
80 81 1.301165 CTTTTTCGGGGTCGACGGT 60.301 57.895 9.92 0.00 45.92 4.83
81 82 0.600782 TTCTTTTTCGGGGTCGACGG 60.601 55.000 9.92 1.31 45.92 4.79
82 83 1.219646 TTTCTTTTTCGGGGTCGACG 58.780 50.000 9.92 0.00 45.92 5.12
83 84 3.251487 TGATTTTCTTTTTCGGGGTCGAC 59.749 43.478 7.13 7.13 45.92 4.20
84 85 3.478509 TGATTTTCTTTTTCGGGGTCGA 58.521 40.909 0.00 0.00 44.44 4.20
85 86 3.907894 TGATTTTCTTTTTCGGGGTCG 57.092 42.857 0.00 0.00 37.82 4.79
86 87 5.465390 CCTTTTGATTTTCTTTTTCGGGGTC 59.535 40.000 0.00 0.00 0.00 4.46
87 88 5.104693 ACCTTTTGATTTTCTTTTTCGGGGT 60.105 36.000 0.00 0.00 0.00 4.95
88 89 5.236263 CACCTTTTGATTTTCTTTTTCGGGG 59.764 40.000 0.00 0.00 0.00 5.73
89 90 5.236263 CCACCTTTTGATTTTCTTTTTCGGG 59.764 40.000 0.00 0.00 0.00 5.14
90 91 6.045955 TCCACCTTTTGATTTTCTTTTTCGG 58.954 36.000 0.00 0.00 0.00 4.30
91 92 7.532682 TTCCACCTTTTGATTTTCTTTTTCG 57.467 32.000 0.00 0.00 0.00 3.46
94 95 9.764363 GTCTATTCCACCTTTTGATTTTCTTTT 57.236 29.630 0.00 0.00 0.00 2.27
95 96 8.923270 TGTCTATTCCACCTTTTGATTTTCTTT 58.077 29.630 0.00 0.00 0.00 2.52
96 97 8.360390 GTGTCTATTCCACCTTTTGATTTTCTT 58.640 33.333 0.00 0.00 0.00 2.52
97 98 7.886338 GTGTCTATTCCACCTTTTGATTTTCT 58.114 34.615 0.00 0.00 0.00 2.52
110 111 8.506168 TGATTTCAAATAGGTGTCTATTCCAC 57.494 34.615 0.00 0.00 43.31 4.02
111 112 7.283127 GCTGATTTCAAATAGGTGTCTATTCCA 59.717 37.037 0.00 0.00 43.31 3.53
112 113 7.500559 AGCTGATTTCAAATAGGTGTCTATTCC 59.499 37.037 0.00 0.00 43.31 3.01
113 114 8.443953 AGCTGATTTCAAATAGGTGTCTATTC 57.556 34.615 0.00 0.00 43.31 1.75
114 115 8.814038 AAGCTGATTTCAAATAGGTGTCTATT 57.186 30.769 0.00 0.00 45.32 1.73
115 116 9.553064 CTAAGCTGATTTCAAATAGGTGTCTAT 57.447 33.333 0.00 0.00 37.78 1.98
116 117 7.495934 GCTAAGCTGATTTCAAATAGGTGTCTA 59.504 37.037 0.00 0.00 0.00 2.59
117 118 6.317391 GCTAAGCTGATTTCAAATAGGTGTCT 59.683 38.462 0.00 0.00 0.00 3.41
118 119 6.458888 GGCTAAGCTGATTTCAAATAGGTGTC 60.459 42.308 0.00 0.00 0.00 3.67
119 120 5.358160 GGCTAAGCTGATTTCAAATAGGTGT 59.642 40.000 0.00 0.00 0.00 4.16
120 121 5.504665 CGGCTAAGCTGATTTCAAATAGGTG 60.505 44.000 0.00 0.00 37.02 4.00
121 122 4.576463 CGGCTAAGCTGATTTCAAATAGGT 59.424 41.667 0.00 0.00 37.02 3.08
122 123 4.555511 GCGGCTAAGCTGATTTCAAATAGG 60.556 45.833 0.00 0.00 37.02 2.57
123 124 4.531332 GCGGCTAAGCTGATTTCAAATAG 58.469 43.478 0.00 0.00 37.02 1.73
124 125 3.315191 GGCGGCTAAGCTGATTTCAAATA 59.685 43.478 0.00 0.00 37.02 1.40
125 126 2.099756 GGCGGCTAAGCTGATTTCAAAT 59.900 45.455 0.00 0.00 37.02 2.32
126 127 1.472480 GGCGGCTAAGCTGATTTCAAA 59.528 47.619 0.00 0.00 37.02 2.69
127 128 1.094785 GGCGGCTAAGCTGATTTCAA 58.905 50.000 0.00 0.00 37.02 2.69
128 129 1.089481 CGGCGGCTAAGCTGATTTCA 61.089 55.000 7.61 0.00 45.94 2.69
129 130 0.810031 TCGGCGGCTAAGCTGATTTC 60.810 55.000 7.21 0.00 46.50 2.17
130 131 1.220749 TCGGCGGCTAAGCTGATTT 59.779 52.632 7.21 0.00 46.50 2.17
131 132 2.900273 TCGGCGGCTAAGCTGATT 59.100 55.556 7.21 0.00 46.50 2.57
134 135 1.696832 GAACTTCGGCGGCTAAGCTG 61.697 60.000 21.08 1.62 44.50 4.24
135 136 1.448013 GAACTTCGGCGGCTAAGCT 60.448 57.895 21.08 10.81 37.29 3.74
136 137 1.296056 TTGAACTTCGGCGGCTAAGC 61.296 55.000 21.08 8.26 0.00 3.09
137 138 1.327764 GATTGAACTTCGGCGGCTAAG 59.672 52.381 19.82 19.82 0.00 2.18
138 139 1.066430 AGATTGAACTTCGGCGGCTAA 60.066 47.619 7.21 0.56 0.00 3.09
139 140 0.535335 AGATTGAACTTCGGCGGCTA 59.465 50.000 7.21 0.00 0.00 3.93
140 141 1.021390 CAGATTGAACTTCGGCGGCT 61.021 55.000 7.21 0.00 0.00 5.52
141 142 1.425428 CAGATTGAACTTCGGCGGC 59.575 57.895 7.21 0.00 0.00 6.53
142 143 1.298157 TGCAGATTGAACTTCGGCGG 61.298 55.000 7.21 0.00 37.15 6.13
143 144 0.729116 ATGCAGATTGAACTTCGGCG 59.271 50.000 0.00 0.00 37.15 6.46
144 145 2.162208 TGAATGCAGATTGAACTTCGGC 59.838 45.455 0.00 0.00 35.27 5.54
145 146 4.409570 CTTGAATGCAGATTGAACTTCGG 58.590 43.478 0.00 0.00 0.00 4.30
146 147 3.850273 GCTTGAATGCAGATTGAACTTCG 59.150 43.478 0.00 0.00 0.00 3.79
147 148 4.171754 GGCTTGAATGCAGATTGAACTTC 58.828 43.478 0.00 0.00 34.04 3.01
148 149 3.575256 TGGCTTGAATGCAGATTGAACTT 59.425 39.130 0.00 0.00 34.04 2.66
149 150 3.159472 TGGCTTGAATGCAGATTGAACT 58.841 40.909 0.00 0.00 34.04 3.01
150 151 3.581024 TGGCTTGAATGCAGATTGAAC 57.419 42.857 0.00 0.00 34.04 3.18
151 152 4.811969 AATGGCTTGAATGCAGATTGAA 57.188 36.364 0.00 0.00 34.04 2.69
152 153 4.811969 AAATGGCTTGAATGCAGATTGA 57.188 36.364 0.00 0.00 34.04 2.57
153 154 4.032445 CGAAAATGGCTTGAATGCAGATTG 59.968 41.667 0.00 0.00 34.04 2.67
154 155 4.178540 CGAAAATGGCTTGAATGCAGATT 58.821 39.130 0.00 0.00 34.04 2.40
155 156 3.194116 ACGAAAATGGCTTGAATGCAGAT 59.806 39.130 0.00 0.00 34.04 2.90
156 157 2.557924 ACGAAAATGGCTTGAATGCAGA 59.442 40.909 0.00 0.00 34.04 4.26
157 158 2.950433 ACGAAAATGGCTTGAATGCAG 58.050 42.857 0.00 0.00 34.04 4.41
158 159 3.383620 AACGAAAATGGCTTGAATGCA 57.616 38.095 0.00 0.00 34.04 3.96
159 160 3.740321 TGAAACGAAAATGGCTTGAATGC 59.260 39.130 0.00 0.00 0.00 3.56
160 161 5.903764 TTGAAACGAAAATGGCTTGAATG 57.096 34.783 0.00 0.00 0.00 2.67
161 162 6.073112 CCAATTGAAACGAAAATGGCTTGAAT 60.073 34.615 7.12 0.00 0.00 2.57
162 163 5.236047 CCAATTGAAACGAAAATGGCTTGAA 59.764 36.000 7.12 0.00 0.00 2.69
163 164 4.749099 CCAATTGAAACGAAAATGGCTTGA 59.251 37.500 7.12 0.00 0.00 3.02
164 165 4.611130 GCCAATTGAAACGAAAATGGCTTG 60.611 41.667 7.12 0.00 37.01 4.01
165 166 3.498018 GCCAATTGAAACGAAAATGGCTT 59.502 39.130 7.12 0.00 37.01 4.35
166 167 3.066380 GCCAATTGAAACGAAAATGGCT 58.934 40.909 7.12 0.00 37.01 4.75
167 168 3.066380 AGCCAATTGAAACGAAAATGGC 58.934 40.909 7.12 7.06 39.93 4.40
168 169 4.305769 TCAGCCAATTGAAACGAAAATGG 58.694 39.130 7.12 0.00 0.00 3.16
169 170 5.613142 GCTTCAGCCAATTGAAACGAAAATG 60.613 40.000 7.12 0.00 36.69 2.32
170 171 4.448732 GCTTCAGCCAATTGAAACGAAAAT 59.551 37.500 7.12 0.00 36.69 1.82
171 172 3.801594 GCTTCAGCCAATTGAAACGAAAA 59.198 39.130 7.12 0.00 36.69 2.29
176 177 3.656559 ACATGCTTCAGCCAATTGAAAC 58.343 40.909 7.12 0.00 41.18 2.78
177 178 4.202233 TGAACATGCTTCAGCCAATTGAAA 60.202 37.500 7.12 0.00 41.18 2.69
180 181 3.306917 TGAACATGCTTCAGCCAATTG 57.693 42.857 0.00 0.00 41.18 2.32
182 183 2.895404 ACTTGAACATGCTTCAGCCAAT 59.105 40.909 9.59 0.00 41.18 3.16
186 187 3.365364 GGTACACTTGAACATGCTTCAGC 60.365 47.826 9.59 0.00 42.50 4.26
187 188 4.067896 AGGTACACTTGAACATGCTTCAG 58.932 43.478 9.59 7.71 0.00 3.02
197 198 7.602644 CAGCTTTATCACTAAGGTACACTTGAA 59.397 37.037 0.00 0.00 40.37 2.69
206 207 6.403636 CGCAAAATCAGCTTTATCACTAAGGT 60.404 38.462 0.00 0.00 33.90 3.50
208 209 6.775088 TCGCAAAATCAGCTTTATCACTAAG 58.225 36.000 0.00 0.00 0.00 2.18
210 211 6.735678 TTCGCAAAATCAGCTTTATCACTA 57.264 33.333 0.00 0.00 0.00 2.74
211 212 5.627499 TTCGCAAAATCAGCTTTATCACT 57.373 34.783 0.00 0.00 0.00 3.41
215 216 6.215845 AGTTGTTTCGCAAAATCAGCTTTAT 58.784 32.000 0.00 0.00 39.03 1.40
216 217 5.587289 AGTTGTTTCGCAAAATCAGCTTTA 58.413 33.333 0.00 0.00 39.03 1.85
257 258 2.028420 TGGCTTCGAATCATCTGTGG 57.972 50.000 0.00 0.00 0.00 4.17
258 259 5.739752 TTATTGGCTTCGAATCATCTGTG 57.260 39.130 0.00 0.00 0.00 3.66
262 263 7.250569 TCAGTTTTTATTGGCTTCGAATCATC 58.749 34.615 0.00 0.00 0.00 2.92
263 264 7.156876 TCAGTTTTTATTGGCTTCGAATCAT 57.843 32.000 0.00 0.00 0.00 2.45
286 287 7.535489 AGAGCACTAACGGTATGTTTATTTC 57.465 36.000 0.00 0.00 42.09 2.17
297 298 3.354467 ACTAAGCTAGAGCACTAACGGT 58.646 45.455 4.01 0.00 45.16 4.83
300 301 9.589111 AATAGAAAACTAAGCTAGAGCACTAAC 57.411 33.333 4.01 0.00 45.16 2.34
304 305 8.710835 AGAAATAGAAAACTAAGCTAGAGCAC 57.289 34.615 4.01 0.00 45.16 4.40
334 335 5.771469 TCGTTTACTCCGTCACATAGAAAA 58.229 37.500 0.00 0.00 0.00 2.29
340 341 2.163815 CTCCTCGTTTACTCCGTCACAT 59.836 50.000 0.00 0.00 0.00 3.21
346 347 4.106029 TCATTTCTCCTCGTTTACTCCG 57.894 45.455 0.00 0.00 0.00 4.63
347 348 8.488651 TTTTATCATTTCTCCTCGTTTACTCC 57.511 34.615 0.00 0.00 0.00 3.85
352 357 7.611213 ACGATTTTATCATTTCTCCTCGTTT 57.389 32.000 0.00 0.00 33.51 3.60
373 2128 6.224584 TGTGTTGGATTGTGTAAAGATACGA 58.775 36.000 0.00 0.00 34.60 3.43
401 2156 9.952030 TTGATGAGTGATGTACAACCTTTAATA 57.048 29.630 0.00 0.00 0.00 0.98
402 2157 8.730680 GTTGATGAGTGATGTACAACCTTTAAT 58.269 33.333 0.00 0.00 33.83 1.40
404 2159 7.450074 AGTTGATGAGTGATGTACAACCTTTA 58.550 34.615 0.00 0.00 38.48 1.85
444 2199 8.889717 CCTCGTTACAGAATGGTTTAACAATAT 58.110 33.333 0.00 0.00 43.62 1.28
445 2200 8.095792 TCCTCGTTACAGAATGGTTTAACAATA 58.904 33.333 0.00 0.00 43.62 1.90
446 2201 6.938030 TCCTCGTTACAGAATGGTTTAACAAT 59.062 34.615 0.00 0.00 43.62 2.71
447 2202 6.289834 TCCTCGTTACAGAATGGTTTAACAA 58.710 36.000 0.00 0.00 43.62 2.83
448 2203 5.856156 TCCTCGTTACAGAATGGTTTAACA 58.144 37.500 0.00 0.00 43.62 2.41
449 2204 5.930569 ACTCCTCGTTACAGAATGGTTTAAC 59.069 40.000 0.00 0.00 43.62 2.01
450 2205 6.105397 ACTCCTCGTTACAGAATGGTTTAA 57.895 37.500 0.00 0.00 43.62 1.52
451 2206 5.733620 ACTCCTCGTTACAGAATGGTTTA 57.266 39.130 0.00 0.00 43.62 2.01
452 2207 4.618920 ACTCCTCGTTACAGAATGGTTT 57.381 40.909 0.00 0.00 43.62 3.27
453 2208 4.771054 AGTACTCCTCGTTACAGAATGGTT 59.229 41.667 0.00 0.00 43.62 3.67
454 2209 4.342359 AGTACTCCTCGTTACAGAATGGT 58.658 43.478 0.00 0.00 43.62 3.55
455 2210 4.985538 AGTACTCCTCGTTACAGAATGG 57.014 45.455 0.00 0.00 43.62 3.16
456 2211 5.972382 GCTAAGTACTCCTCGTTACAGAATG 59.028 44.000 0.00 0.00 46.00 2.67
457 2212 5.887035 AGCTAAGTACTCCTCGTTACAGAAT 59.113 40.000 0.00 0.00 0.00 2.40
458 2213 5.251764 AGCTAAGTACTCCTCGTTACAGAA 58.748 41.667 0.00 0.00 0.00 3.02
459 2214 4.841422 AGCTAAGTACTCCTCGTTACAGA 58.159 43.478 0.00 0.00 0.00 3.41
460 2215 6.674694 TTAGCTAAGTACTCCTCGTTACAG 57.325 41.667 0.86 0.00 0.00 2.74
461 2216 6.404074 GCTTTAGCTAAGTACTCCTCGTTACA 60.404 42.308 6.24 0.00 36.19 2.41
462 2217 5.970612 GCTTTAGCTAAGTACTCCTCGTTAC 59.029 44.000 6.24 0.00 36.19 2.50
463 2218 5.649395 TGCTTTAGCTAAGTACTCCTCGTTA 59.351 40.000 6.24 0.00 42.66 3.18
464 2219 4.461781 TGCTTTAGCTAAGTACTCCTCGTT 59.538 41.667 6.24 0.00 42.66 3.85
465 2220 4.015084 TGCTTTAGCTAAGTACTCCTCGT 58.985 43.478 6.24 0.00 42.66 4.18
466 2221 4.498345 CCTGCTTTAGCTAAGTACTCCTCG 60.498 50.000 6.24 0.00 42.66 4.63
467 2222 4.645588 TCCTGCTTTAGCTAAGTACTCCTC 59.354 45.833 6.24 0.00 42.66 3.71
468 2223 4.403113 GTCCTGCTTTAGCTAAGTACTCCT 59.597 45.833 6.24 0.00 42.66 3.69
469 2224 4.403113 AGTCCTGCTTTAGCTAAGTACTCC 59.597 45.833 6.24 0.00 42.66 3.85
470 2225 5.585820 AGTCCTGCTTTAGCTAAGTACTC 57.414 43.478 6.24 0.00 42.66 2.59
471 2226 6.189133 ACTAGTCCTGCTTTAGCTAAGTACT 58.811 40.000 6.24 7.69 42.66 2.73
472 2227 6.453926 ACTAGTCCTGCTTTAGCTAAGTAC 57.546 41.667 6.24 1.23 42.66 2.73
479 2234 6.887626 ATCTACTACTAGTCCTGCTTTAGC 57.112 41.667 0.00 0.00 42.50 3.09
484 2239 6.768861 CACTGTAATCTACTACTAGTCCTGCT 59.231 42.308 0.00 0.00 0.00 4.24
505 2260 3.804325 CAGGGCGAGTATTTGATACACTG 59.196 47.826 0.00 0.00 38.21 3.66
523 2278 8.833231 ATTCATCAAACGTATCTTATACAGGG 57.167 34.615 0.00 0.00 0.00 4.45
542 2297 8.607441 TTGTATTGGTGCTCAGTATATTCATC 57.393 34.615 0.00 0.00 0.00 2.92
546 2301 8.807948 ACTTTTGTATTGGTGCTCAGTATATT 57.192 30.769 0.00 0.00 0.00 1.28
562 2317 4.385825 TCTCCACGCAAGAACTTTTGTAT 58.614 39.130 0.00 0.00 43.62 2.29
667 2422 2.887568 GAGCCTCGGTCACATGCG 60.888 66.667 0.00 0.00 0.00 4.73
698 2456 4.899239 GCACTCCGCCTCCGATGG 62.899 72.222 0.00 0.00 36.29 3.51
871 2671 0.179089 CAGGAGGAAGACATGCTCGG 60.179 60.000 0.00 0.00 46.76 4.63
985 2819 4.820744 CATGGCGGGGTTGGGGAG 62.821 72.222 0.00 0.00 0.00 4.30
1140 3322 2.649034 GCGTCGAAGGTGAGGTCA 59.351 61.111 0.00 0.00 0.00 4.02
1209 3394 1.134877 TCGTACTCGTCCTCGTCATCT 60.135 52.381 0.00 0.00 38.33 2.90
1212 3397 0.738762 CCTCGTACTCGTCCTCGTCA 60.739 60.000 0.00 0.00 38.33 4.35
1218 3403 1.427592 CGTCCTCCTCGTACTCGTCC 61.428 65.000 0.00 0.00 38.33 4.79
1528 3716 2.028567 GGAAGTGGGTTCTCAGACTGAG 60.029 54.545 24.13 24.13 45.59 3.35
1529 3717 1.971357 GGAAGTGGGTTCTCAGACTGA 59.029 52.381 4.78 4.78 35.25 3.41
1531 3719 0.969894 CGGAAGTGGGTTCTCAGACT 59.030 55.000 0.00 0.00 35.25 3.24
1533 3721 3.143010 ACGGAAGTGGGTTCTCAGA 57.857 52.632 0.00 0.00 46.97 3.27
1534 3722 4.759995 AGCAACGGAAGTGGGTTCTCAG 62.760 54.545 0.00 0.00 44.92 3.35
1535 3723 2.924355 AGCAACGGAAGTGGGTTCTCA 61.924 52.381 0.00 0.00 44.92 3.27
1536 3724 0.250338 AGCAACGGAAGTGGGTTCTC 60.250 55.000 0.00 0.00 44.92 2.87
1545 3733 1.144969 TAGCAACGAAGCAACGGAAG 58.855 50.000 7.39 0.00 37.61 3.46
1546 3734 1.803334 ATAGCAACGAAGCAACGGAA 58.197 45.000 7.39 0.00 37.61 4.30
1547 3735 1.803334 AATAGCAACGAAGCAACGGA 58.197 45.000 7.39 0.00 37.61 4.69
1548 3736 2.611974 AAATAGCAACGAAGCAACGG 57.388 45.000 7.39 0.00 37.61 4.44
1549 3737 3.119463 CCAAAAATAGCAACGAAGCAACG 59.881 43.478 6.62 1.28 36.85 4.10
1550 3738 4.048504 ACCAAAAATAGCAACGAAGCAAC 58.951 39.130 6.62 0.00 36.85 4.17
1594 3788 0.948623 CCGCCGCAATTCGATATCCA 60.949 55.000 0.00 0.00 41.67 3.41
1711 3905 7.506114 ACTGACTGTTCTGGAAAAACATACTA 58.494 34.615 0.00 0.00 36.14 1.82
1712 3906 6.357367 ACTGACTGTTCTGGAAAAACATACT 58.643 36.000 0.00 0.00 36.14 2.12
1713 3907 6.619801 ACTGACTGTTCTGGAAAAACATAC 57.380 37.500 0.00 0.00 36.14 2.39
1794 3989 3.362706 TGTACATAGACAGTCCCCAGTC 58.637 50.000 0.00 0.00 35.02 3.51
1797 3992 5.772393 AAATTGTACATAGACAGTCCCCA 57.228 39.130 0.00 0.00 0.00 4.96
1814 4009 4.565229 CGGTCTCGTTATCGTCAAAATTG 58.435 43.478 0.00 0.00 38.33 2.32
1815 4010 4.835199 CGGTCTCGTTATCGTCAAAATT 57.165 40.909 0.00 0.00 38.33 1.82
1934 4224 9.906660 TTTTTATTGCCTGAAAATACTGTACTG 57.093 29.630 0.00 0.00 0.00 2.74
1941 4231 7.861176 TGTCGTTTTTATTGCCTGAAAATAC 57.139 32.000 0.00 0.00 0.00 1.89
1949 4239 5.014202 AGGGTTATGTCGTTTTTATTGCCT 58.986 37.500 0.00 0.00 0.00 4.75
2091 4381 3.070015 TGAAACTCTGTGCTCTGATGTGA 59.930 43.478 0.00 0.00 0.00 3.58
2097 4387 2.245159 TGGTGAAACTCTGTGCTCTG 57.755 50.000 0.00 0.00 36.74 3.35
2144 4434 7.835822 TGCAATGCTTGTACTAAATTACCATT 58.164 30.769 6.82 0.00 0.00 3.16
2262 4555 9.696917 AACAAATAACTGGAGTCAAATCAAATC 57.303 29.630 0.00 0.00 0.00 2.17
2363 4657 8.934023 TCCTAAAATGTTTCAACAAGGTAGAT 57.066 30.769 7.65 0.00 43.03 1.98
2368 4662 7.546667 CCATGATCCTAAAATGTTTCAACAAGG 59.453 37.037 0.00 0.00 43.03 3.61
2369 4663 7.063780 GCCATGATCCTAAAATGTTTCAACAAG 59.936 37.037 0.00 0.00 43.03 3.16
2399 4693 2.714991 CCTAGCAGCTGACTGGCGA 61.715 63.158 20.43 0.00 44.63 5.54
2447 4741 3.898123 ACTGTACTTTCCTCTCAAGCTCA 59.102 43.478 0.00 0.00 0.00 4.26
2638 4932 7.275560 GCGTTCATTTGAATACCTAAGCATTTT 59.724 33.333 0.00 0.00 36.33 1.82
2689 4983 7.918562 GCGGTTGGAAATTCTAATTAAATGCTA 59.081 33.333 0.00 0.00 0.00 3.49
2721 5015 9.086336 ACATTCAATAACTGAACAAACAAACAG 57.914 29.630 0.00 0.00 46.80 3.16
2727 5021 7.850492 GGCAAAACATTCAATAACTGAACAAAC 59.150 33.333 0.00 0.00 46.80 2.93
2763 5057 6.482308 ACCATACGCAGACATAAAAGGTATTC 59.518 38.462 0.00 0.00 0.00 1.75
2775 5069 6.651643 ACAAATTTAGTAACCATACGCAGACA 59.348 34.615 0.00 0.00 37.11 3.41
2782 5076 9.767228 AAAAACCCACAAATTTAGTAACCATAC 57.233 29.630 0.00 0.00 0.00 2.39
2827 5122 9.251792 GTCATTTTCGGGTTTATTTAACAAGTT 57.748 29.630 0.00 0.00 38.55 2.66
2909 5204 2.240414 ACCCCCTACCTTGTAATTTCCG 59.760 50.000 0.00 0.00 0.00 4.30
2967 5262 1.227263 AAGATGGATAAGCGCGCGT 60.227 52.632 32.35 26.23 0.00 6.01
3039 5334 4.006319 CAGTCTCCTTTCCTTTGGTCATC 58.994 47.826 0.00 0.00 0.00 2.92
3070 5365 2.107141 GCGGAATGCTACCTCGCT 59.893 61.111 0.00 0.00 42.62 4.93
3100 5395 4.935578 TCCATCTCTCTACTTTCACTCCA 58.064 43.478 0.00 0.00 0.00 3.86
3118 5413 2.037847 GGCCCAACCAAGCTCCAT 59.962 61.111 0.00 0.00 38.86 3.41
3205 5501 3.826157 TGGTACTTTTTGAGAATGGCCTG 59.174 43.478 3.32 0.00 0.00 4.85
3286 5590 1.142870 GTTGGTGATATAGGGGCTGCA 59.857 52.381 0.50 0.00 0.00 4.41
3287 5591 1.421646 AGTTGGTGATATAGGGGCTGC 59.578 52.381 0.00 0.00 0.00 5.25
3288 5592 3.117888 ACAAGTTGGTGATATAGGGGCTG 60.118 47.826 7.96 0.00 0.00 4.85
3289 5593 3.123273 ACAAGTTGGTGATATAGGGGCT 58.877 45.455 7.96 0.00 0.00 5.19
3290 5594 3.577805 ACAAGTTGGTGATATAGGGGC 57.422 47.619 7.96 0.00 0.00 5.80
3291 5595 7.445402 CAGAAATACAAGTTGGTGATATAGGGG 59.555 40.741 7.96 0.00 0.00 4.79
3301 5605 7.823745 AACAGATTCAGAAATACAAGTTGGT 57.176 32.000 7.96 0.00 0.00 3.67
3302 5606 8.137437 ACAAACAGATTCAGAAATACAAGTTGG 58.863 33.333 7.96 0.00 0.00 3.77
3425 5754 0.471191 ATCAATCGATGCAGAGGCCA 59.529 50.000 5.01 0.00 40.13 5.36
3438 5767 9.754382 AAAATTACATGGCTATGTTCATCAATC 57.246 29.630 21.52 0.00 45.01 2.67
3853 6184 6.512297 TCATGGAAAACCAAAAAGAGTTAGC 58.488 36.000 0.00 0.00 0.00 3.09
3856 6187 6.154363 TCACTCATGGAAAACCAAAAAGAGTT 59.846 34.615 0.00 0.00 32.03 3.01
3857 6188 5.656416 TCACTCATGGAAAACCAAAAAGAGT 59.344 36.000 0.00 0.00 34.45 3.24
3928 6263 5.361571 GGGGGAGTTCTTTGAAAAACTACAA 59.638 40.000 13.37 0.00 37.96 2.41
3929 6264 4.891168 GGGGGAGTTCTTTGAAAAACTACA 59.109 41.667 13.37 0.00 37.96 2.74
3930 6265 5.138276 AGGGGGAGTTCTTTGAAAAACTAC 58.862 41.667 6.64 6.64 35.90 2.73
3931 6266 5.397553 AGGGGGAGTTCTTTGAAAAACTA 57.602 39.130 5.80 0.00 35.90 2.24
3948 6283 4.079787 TCACTCATGGAAAATCTAAGGGGG 60.080 45.833 0.00 0.00 0.00 5.40
3955 6290 4.543590 ACTCGTCACTCATGGAAAATCT 57.456 40.909 0.00 0.00 0.00 2.40
3971 6306 6.084925 CGTATCTGTAGAAGACAAAACTCGT 58.915 40.000 0.00 0.00 37.88 4.18
4045 6380 2.241176 ACCTGACACTCAAGGAAAACCA 59.759 45.455 0.00 0.00 0.00 3.67
4074 6409 8.370940 AGTCCATTGACAATATGTATCTGTAGG 58.629 37.037 0.00 0.00 44.33 3.18
4089 6424 3.890756 ACAAATTCTGCAGTCCATTGACA 59.109 39.130 21.85 0.00 44.33 3.58
4090 6425 4.510038 ACAAATTCTGCAGTCCATTGAC 57.490 40.909 21.85 0.00 42.09 3.18
4092 6427 5.633830 ACTACAAATTCTGCAGTCCATTG 57.366 39.130 14.67 16.03 23.00 2.82
4094 6429 6.476378 AGTAACTACAAATTCTGCAGTCCAT 58.524 36.000 14.67 1.71 29.70 3.41
4095 6430 5.865085 AGTAACTACAAATTCTGCAGTCCA 58.135 37.500 14.67 0.00 29.70 4.02
4096 6431 5.932303 TGAGTAACTACAAATTCTGCAGTCC 59.068 40.000 14.67 0.00 29.70 3.85
4097 6432 6.423905 TGTGAGTAACTACAAATTCTGCAGTC 59.576 38.462 14.67 0.00 29.70 3.51
4339 6674 4.032960 TGCAGTTATGGAAGAACATGGT 57.967 40.909 0.00 0.00 32.39 3.55
4349 6684 6.112734 ACATCGAGTTATTTGCAGTTATGGA 58.887 36.000 0.00 0.00 0.00 3.41
4401 6739 2.512692 TGGAATGGAGGGATGTGTTG 57.487 50.000 0.00 0.00 0.00 3.33
4403 6741 3.541242 TTTTGGAATGGAGGGATGTGT 57.459 42.857 0.00 0.00 0.00 3.72
4404 6742 5.448654 TCTATTTTGGAATGGAGGGATGTG 58.551 41.667 0.00 0.00 30.37 3.21
4408 6746 5.433051 AGTCATCTATTTTGGAATGGAGGGA 59.567 40.000 0.00 0.00 36.39 4.20
4409 6747 5.699143 AGTCATCTATTTTGGAATGGAGGG 58.301 41.667 0.00 0.00 36.39 4.30
4410 6748 6.359804 TGAGTCATCTATTTTGGAATGGAGG 58.640 40.000 0.00 0.00 36.39 4.30
4411 6749 7.555554 AGTTGAGTCATCTATTTTGGAATGGAG 59.444 37.037 1.70 0.00 36.39 3.86
4412 6750 7.405292 AGTTGAGTCATCTATTTTGGAATGGA 58.595 34.615 1.70 0.00 37.20 3.41
4413 6751 7.636150 AGTTGAGTCATCTATTTTGGAATGG 57.364 36.000 1.70 0.00 0.00 3.16
4414 6752 9.350357 CAAAGTTGAGTCATCTATTTTGGAATG 57.650 33.333 4.14 0.00 35.65 2.67
4415 6753 9.082313 ACAAAGTTGAGTCATCTATTTTGGAAT 57.918 29.630 14.35 0.00 40.00 3.01
4462 6800 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4463 6801 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4464 6802 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4465 6803 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4466 6804 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
4467 6805 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4468 6806 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4469 6807 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4470 6808 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4471 6809 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4472 6810 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4473 6811 5.237344 CCATCCGTTCCAAAATAGATGACTC 59.763 44.000 0.00 0.00 32.55 3.36
4474 6812 5.104527 TCCATCCGTTCCAAAATAGATGACT 60.105 40.000 0.00 0.00 32.55 3.41
4475 6813 5.123227 TCCATCCGTTCCAAAATAGATGAC 58.877 41.667 0.00 0.00 32.55 3.06
4476 6814 5.104527 ACTCCATCCGTTCCAAAATAGATGA 60.105 40.000 0.00 0.00 32.55 2.92
4477 6815 5.126067 ACTCCATCCGTTCCAAAATAGATG 58.874 41.667 0.00 0.00 31.49 2.90
4478 6816 5.373812 ACTCCATCCGTTCCAAAATAGAT 57.626 39.130 0.00 0.00 0.00 1.98
4479 6817 4.837093 ACTCCATCCGTTCCAAAATAGA 57.163 40.909 0.00 0.00 0.00 1.98
4480 6818 6.073765 CGAATACTCCATCCGTTCCAAAATAG 60.074 42.308 0.00 0.00 0.00 1.73
4481 6819 5.756347 CGAATACTCCATCCGTTCCAAAATA 59.244 40.000 0.00 0.00 0.00 1.40
4482 6820 4.574828 CGAATACTCCATCCGTTCCAAAAT 59.425 41.667 0.00 0.00 0.00 1.82
4483 6821 3.936453 CGAATACTCCATCCGTTCCAAAA 59.064 43.478 0.00 0.00 0.00 2.44
4484 6822 3.527533 CGAATACTCCATCCGTTCCAAA 58.472 45.455 0.00 0.00 0.00 3.28
4485 6823 2.740580 GCGAATACTCCATCCGTTCCAA 60.741 50.000 0.00 0.00 0.00 3.53
4486 6824 1.202486 GCGAATACTCCATCCGTTCCA 60.202 52.381 0.00 0.00 0.00 3.53
4487 6825 1.068741 AGCGAATACTCCATCCGTTCC 59.931 52.381 0.00 0.00 0.00 3.62
4488 6826 2.510768 AGCGAATACTCCATCCGTTC 57.489 50.000 0.00 0.00 0.00 3.95
4489 6827 2.550978 CAAGCGAATACTCCATCCGTT 58.449 47.619 0.00 0.00 0.00 4.44
4490 6828 1.202533 CCAAGCGAATACTCCATCCGT 60.203 52.381 0.00 0.00 0.00 4.69
4491 6829 1.068588 TCCAAGCGAATACTCCATCCG 59.931 52.381 0.00 0.00 0.00 4.18
4492 6830 2.910688 TCCAAGCGAATACTCCATCC 57.089 50.000 0.00 0.00 0.00 3.51
4493 6831 5.296780 TCAAAATCCAAGCGAATACTCCATC 59.703 40.000 0.00 0.00 0.00 3.51
4494 6832 5.192927 TCAAAATCCAAGCGAATACTCCAT 58.807 37.500 0.00 0.00 0.00 3.41
4495 6833 4.584874 TCAAAATCCAAGCGAATACTCCA 58.415 39.130 0.00 0.00 0.00 3.86
4496 6834 4.636206 ACTCAAAATCCAAGCGAATACTCC 59.364 41.667 0.00 0.00 0.00 3.85
4497 6835 5.220681 GGACTCAAAATCCAAGCGAATACTC 60.221 44.000 0.00 0.00 36.15 2.59
4546 6884 2.154462 AGACCGAAAATGGCTGTTCAG 58.846 47.619 0.00 0.00 0.00 3.02
4600 6938 9.777297 AAGTTAACATAGCCAAAAATGAAACAT 57.223 25.926 8.61 0.00 31.24 2.71
4628 6966 4.236527 AGATGGTAGGGAACATTGGAAC 57.763 45.455 0.00 0.00 0.00 3.62
4629 6967 4.946160 AAGATGGTAGGGAACATTGGAA 57.054 40.909 0.00 0.00 0.00 3.53
4630 6968 4.569653 CCAAAGATGGTAGGGAACATTGGA 60.570 45.833 0.00 0.00 42.18 3.53
4631 6969 3.701040 CCAAAGATGGTAGGGAACATTGG 59.299 47.826 0.00 0.00 42.18 3.16
4632 6970 4.989279 CCAAAGATGGTAGGGAACATTG 57.011 45.455 0.00 0.00 42.18 2.82
4662 7000 2.553602 CAGTGCTGCATGTAACCAAAGA 59.446 45.455 5.27 0.00 0.00 2.52
4676 7014 1.135046 CAGTCTGTCGTTCAGTGCTG 58.865 55.000 15.24 15.24 43.97 4.41
4737 7078 0.388520 GGCTTCCATTGTTGGCGTTC 60.389 55.000 0.00 0.00 43.29 3.95
4754 7095 3.518068 CGCCGAAATTCCCCAGGC 61.518 66.667 0.39 0.39 44.00 4.85
4842 7183 2.357881 TGCTGAAGGTGCTGAGCG 60.358 61.111 0.00 0.00 33.97 5.03
4851 7192 0.179051 GGATCTGGAGCTGCTGAAGG 60.179 60.000 18.22 0.00 0.00 3.46
4866 7207 0.461693 GCTGGTGCTGAGAGTGGATC 60.462 60.000 0.00 0.00 36.03 3.36
5071 7436 4.886121 GTACCCTACCTGCGCCGC 62.886 72.222 4.18 0.00 0.00 6.53
5113 7478 0.531090 AGGCACGAGTACAACGCAAA 60.531 50.000 11.31 0.00 0.00 3.68
5127 7492 1.135731 CTCGACTCGACTCAGGCAC 59.864 63.158 0.00 0.00 0.00 5.01
5146 7511 0.319728 ACTAGCCTATGCATGAGCCG 59.680 55.000 10.16 8.50 41.13 5.52
5235 7600 3.979495 GCTTTCATCAGTTCTGCAACAAG 59.021 43.478 0.00 0.00 34.60 3.16
5338 7703 4.797693 TCAGTCTCTCACGATATTCGAC 57.202 45.455 3.62 0.00 43.74 4.20
5347 7712 4.101942 GCTTCAACTATCAGTCTCTCACG 58.898 47.826 0.00 0.00 0.00 4.35
5470 7848 3.796717 GCAAAATTTAGGCTATGCGTTCC 59.203 43.478 0.00 0.00 0.00 3.62
5474 7852 2.791004 GCAGCAAAATTTAGGCTATGCG 59.209 45.455 14.71 7.59 38.74 4.73
5494 7872 4.418392 CATTTGCAGGACATTAACTCAGC 58.582 43.478 0.00 0.00 0.00 4.26
5506 7884 6.753913 AAGAGATATACTCCATTTGCAGGA 57.246 37.500 0.00 0.00 45.96 3.86
5511 7889 8.442632 TTGCTGAAAGAGATATACTCCATTTG 57.557 34.615 0.00 0.00 45.96 2.32
5512 7890 8.489489 TCTTGCTGAAAGAGATATACTCCATTT 58.511 33.333 0.00 0.00 45.96 2.32
5514 7892 7.609097 TCTTGCTGAAAGAGATATACTCCAT 57.391 36.000 0.00 0.00 45.96 3.41
5540 7918 4.460948 AATGTTGGTCAGCAATCATTCC 57.539 40.909 9.99 0.00 0.00 3.01
5573 7951 5.412594 TGAGAGAGCAATGAAAACATGTACC 59.587 40.000 0.00 0.00 0.00 3.34
5633 8012 1.371183 CTGCCCTTTGGTCGAGTGA 59.629 57.895 0.00 0.00 0.00 3.41
5636 8015 1.743252 GAGCTGCCCTTTGGTCGAG 60.743 63.158 0.00 0.00 0.00 4.04
5650 8029 1.215647 GATTCACGACACCGGAGCT 59.784 57.895 9.46 0.00 40.78 4.09
5652 8031 0.175760 ATGGATTCACGACACCGGAG 59.824 55.000 9.46 1.26 40.78 4.63
5653 8032 0.174845 GATGGATTCACGACACCGGA 59.825 55.000 9.46 0.00 40.78 5.14
5655 8034 1.594397 CATGATGGATTCACGACACCG 59.406 52.381 0.00 0.00 37.11 4.94
5657 8036 2.905075 TCCATGATGGATTCACGACAC 58.095 47.619 10.75 0.00 42.67 3.67
5680 8064 9.908152 TGTATGTACATCGATCGATTTTATTCT 57.092 29.630 27.45 11.65 31.62 2.40
5703 8087 7.386848 CGAGTTTTCTTCCTCCTTTTACATGTA 59.613 37.037 0.08 0.08 0.00 2.29
5704 8088 6.204882 CGAGTTTTCTTCCTCCTTTTACATGT 59.795 38.462 2.69 2.69 0.00 3.21
5705 8089 6.426937 TCGAGTTTTCTTCCTCCTTTTACATG 59.573 38.462 0.00 0.00 0.00 3.21
5707 8091 5.920903 TCGAGTTTTCTTCCTCCTTTTACA 58.079 37.500 0.00 0.00 0.00 2.41
5708 8092 5.107026 GCTCGAGTTTTCTTCCTCCTTTTAC 60.107 44.000 15.13 0.00 0.00 2.01
5709 8093 4.995487 GCTCGAGTTTTCTTCCTCCTTTTA 59.005 41.667 15.13 0.00 0.00 1.52
5713 8097 1.971357 TGCTCGAGTTTTCTTCCTCCT 59.029 47.619 15.13 0.00 0.00 3.69
5714 8098 2.457366 TGCTCGAGTTTTCTTCCTCC 57.543 50.000 15.13 0.00 0.00 4.30
5756 8140 4.263594 TGTTGTTATTCTTGTACCCTCCCC 60.264 45.833 0.00 0.00 0.00 4.81
5812 8196 1.002544 GCTGAGCCTAATTAGCCGGAT 59.997 52.381 5.05 0.00 0.00 4.18
5838 8222 2.040178 GGATACGGGACAGGAGTGATT 58.960 52.381 0.00 0.00 0.00 2.57
5850 8235 3.006110 TCTTTTGCGGTATAGGATACGGG 59.994 47.826 6.38 0.00 46.39 5.28
5914 8303 2.580867 GTAGCTCACCTCGCAGCG 60.581 66.667 9.06 9.06 40.84 5.18
5941 8330 2.278401 GGCTACTACCGAACGGCG 60.278 66.667 13.32 4.80 39.32 6.46
6007 8396 4.485653 TGACCCATCTATCATCACCCTA 57.514 45.455 0.00 0.00 0.00 3.53
6017 8406 2.554462 CGACGACTGATGACCCATCTAT 59.446 50.000 8.22 0.00 41.06 1.98
6018 8407 1.947456 CGACGACTGATGACCCATCTA 59.053 52.381 8.22 0.00 41.06 1.98
6019 8408 0.741326 CGACGACTGATGACCCATCT 59.259 55.000 8.22 0.00 41.06 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.