Multiple sequence alignment - TraesCS2A01G351400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G351400 chr2A 100.000 3318 0 0 1 3318 591276858 591280175 0.000000e+00 6128.0
1 TraesCS2A01G351400 chr2A 78.028 1197 219 27 1148 2323 591264515 591265688 0.000000e+00 713.0
2 TraesCS2A01G351400 chr2A 78.862 492 90 10 1163 1653 591604906 591605384 1.490000e-83 320.0
3 TraesCS2A01G351400 chr2A 78.409 528 79 27 1767 2281 592091999 592092504 8.940000e-81 311.0
4 TraesCS2A01G351400 chr2B 93.519 1219 66 10 1116 2322 526776197 526777414 0.000000e+00 1801.0
5 TraesCS2A01G351400 chr2B 89.158 867 58 17 2469 3318 526777655 526778502 0.000000e+00 1048.0
6 TraesCS2A01G351400 chr2B 86.483 725 39 20 425 1103 526775398 526776109 0.000000e+00 741.0
7 TraesCS2A01G351400 chr2B 77.787 1193 226 24 1150 2318 526763356 526764533 0.000000e+00 699.0
8 TraesCS2A01G351400 chr2B 80.561 535 81 17 1146 1659 632403317 632403849 1.120000e-104 390.0
9 TraesCS2A01G351400 chr2B 79.630 540 85 16 1767 2283 632403871 632404408 6.760000e-97 364.0
10 TraesCS2A01G351400 chr2B 89.796 49 4 1 2707 2754 633606380 633606428 9.940000e-06 62.1
11 TraesCS2A01G351400 chr2D 93.828 1199 60 8 1133 2322 446942015 446943208 0.000000e+00 1792.0
12 TraesCS2A01G351400 chr2D 77.295 1198 228 27 1148 2318 446858938 446857758 0.000000e+00 665.0
13 TraesCS2A01G351400 chr2D 81.481 702 67 26 2453 3131 446943435 446944096 4.910000e-143 518.0
14 TraesCS2A01G351400 chr2D 81.192 537 74 17 1146 1659 532425818 532426350 1.110000e-109 407.0
15 TraesCS2A01G351400 chr2D 79.482 541 84 18 1767 2283 532426372 532426909 3.150000e-95 359.0
16 TraesCS2A01G351400 chr2D 78.517 526 82 24 1767 2281 447322000 447322505 1.920000e-82 316.0
17 TraesCS2A01G351400 chr2D 78.926 484 84 13 1163 1643 447149093 447149561 2.490000e-81 313.0
18 TraesCS2A01G351400 chr2D 83.860 285 24 14 811 1079 446941149 446941427 5.490000e-63 252.0
19 TraesCS2A01G351400 chr2D 84.158 202 25 4 421 622 446940669 446940863 4.370000e-44 189.0
20 TraesCS2A01G351400 chr5A 84.086 1351 173 30 993 2323 582980786 582982114 0.000000e+00 1266.0
21 TraesCS2A01G351400 chr5D 83.510 1413 174 37 951 2323 463087227 463088620 0.000000e+00 1264.0
22 TraesCS2A01G351400 chr5B 83.186 1356 170 33 991 2323 569825389 569826709 0.000000e+00 1188.0
23 TraesCS2A01G351400 chr5B 89.796 49 4 1 2707 2754 573144903 573144951 9.940000e-06 62.1
24 TraesCS2A01G351400 chr6A 90.323 93 9 0 3134 3226 21308454 21308546 4.500000e-24 122.0
25 TraesCS2A01G351400 chr6A 92.958 71 4 1 3138 3207 12895060 12894990 5.860000e-18 102.0
26 TraesCS2A01G351400 chr6A 93.443 61 4 0 1019 1079 154740173 154740113 1.270000e-14 91.6
27 TraesCS2A01G351400 chr1B 90.805 87 8 0 3133 3219 597156802 597156888 2.090000e-22 117.0
28 TraesCS2A01G351400 chr1B 89.796 49 4 1 2707 2754 673714943 673714895 9.940000e-06 62.1
29 TraesCS2A01G351400 chr4B 90.123 81 8 0 3138 3218 31873680 31873760 4.530000e-19 106.0
30 TraesCS2A01G351400 chr3D 88.235 85 10 0 3135 3219 177043190 177043274 5.860000e-18 102.0
31 TraesCS2A01G351400 chr7A 88.889 81 7 2 3140 3219 234638207 234638286 7.580000e-17 99.0
32 TraesCS2A01G351400 chr7A 89.796 49 4 1 2707 2754 488494177 488494129 9.940000e-06 62.1
33 TraesCS2A01G351400 chr6B 88.750 80 9 0 3140 3219 707294029 707294108 7.580000e-17 99.0
34 TraesCS2A01G351400 chr7B 85.714 91 12 1 3130 3219 620674166 620674076 9.800000e-16 95.3
35 TraesCS2A01G351400 chr4A 89.796 49 4 1 2707 2754 601139141 601139189 9.940000e-06 62.1
36 TraesCS2A01G351400 chr1A 89.796 49 4 1 2707 2754 523069444 523069396 9.940000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G351400 chr2A 591276858 591280175 3317 False 6128.000000 6128 100.00000 1 3318 1 chr2A.!!$F2 3317
1 TraesCS2A01G351400 chr2A 591264515 591265688 1173 False 713.000000 713 78.02800 1148 2323 1 chr2A.!!$F1 1175
2 TraesCS2A01G351400 chr2A 592091999 592092504 505 False 311.000000 311 78.40900 1767 2281 1 chr2A.!!$F4 514
3 TraesCS2A01G351400 chr2B 526775398 526778502 3104 False 1196.666667 1801 89.72000 425 3318 3 chr2B.!!$F3 2893
4 TraesCS2A01G351400 chr2B 526763356 526764533 1177 False 699.000000 699 77.78700 1150 2318 1 chr2B.!!$F1 1168
5 TraesCS2A01G351400 chr2B 632403317 632404408 1091 False 377.000000 390 80.09550 1146 2283 2 chr2B.!!$F4 1137
6 TraesCS2A01G351400 chr2D 446940669 446944096 3427 False 687.750000 1792 85.83175 421 3131 4 chr2D.!!$F3 2710
7 TraesCS2A01G351400 chr2D 446857758 446858938 1180 True 665.000000 665 77.29500 1148 2318 1 chr2D.!!$R1 1170
8 TraesCS2A01G351400 chr2D 532425818 532426909 1091 False 383.000000 407 80.33700 1146 2283 2 chr2D.!!$F4 1137
9 TraesCS2A01G351400 chr2D 447322000 447322505 505 False 316.000000 316 78.51700 1767 2281 1 chr2D.!!$F2 514
10 TraesCS2A01G351400 chr5A 582980786 582982114 1328 False 1266.000000 1266 84.08600 993 2323 1 chr5A.!!$F1 1330
11 TraesCS2A01G351400 chr5D 463087227 463088620 1393 False 1264.000000 1264 83.51000 951 2323 1 chr5D.!!$F1 1372
12 TraesCS2A01G351400 chr5B 569825389 569826709 1320 False 1188.000000 1188 83.18600 991 2323 1 chr5B.!!$F1 1332

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 614 0.033601 ACTGACAGCCTCCTCGATCT 60.034 55.0 1.25 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2562 3468 0.388006 GTTACAACAACGGCATGCCC 60.388 55.0 30.79 13.37 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.561519 TTAGAAACCACCCCATTTTCAAAA 57.438 33.333 0.00 0.00 32.62 2.44
24 25 4.776349 AGAAACCACCCCATTTTCAAAAC 58.224 39.130 0.00 0.00 32.62 2.43
25 26 4.473196 AGAAACCACCCCATTTTCAAAACT 59.527 37.500 0.00 0.00 32.62 2.66
26 27 4.415881 AACCACCCCATTTTCAAAACTC 57.584 40.909 0.00 0.00 0.00 3.01
27 28 2.703536 ACCACCCCATTTTCAAAACTCC 59.296 45.455 0.00 0.00 0.00 3.85
28 29 2.972021 CCACCCCATTTTCAAAACTCCT 59.028 45.455 0.00 0.00 0.00 3.69
29 30 4.156477 CCACCCCATTTTCAAAACTCCTA 58.844 43.478 0.00 0.00 0.00 2.94
30 31 4.777366 CCACCCCATTTTCAAAACTCCTAT 59.223 41.667 0.00 0.00 0.00 2.57
31 32 5.955355 CCACCCCATTTTCAAAACTCCTATA 59.045 40.000 0.00 0.00 0.00 1.31
32 33 6.611236 CCACCCCATTTTCAAAACTCCTATAT 59.389 38.462 0.00 0.00 0.00 0.86
33 34 7.125659 CCACCCCATTTTCAAAACTCCTATATT 59.874 37.037 0.00 0.00 0.00 1.28
34 35 8.539544 CACCCCATTTTCAAAACTCCTATATTT 58.460 33.333 0.00 0.00 0.00 1.40
35 36 8.539544 ACCCCATTTTCAAAACTCCTATATTTG 58.460 33.333 0.00 0.00 35.81 2.32
36 37 8.757877 CCCCATTTTCAAAACTCCTATATTTGA 58.242 33.333 0.00 0.00 40.29 2.69
43 44 9.638239 TTCAAAACTCCTATATTTGAATGTTGC 57.362 29.630 8.38 0.00 43.99 4.17
44 45 9.023962 TCAAAACTCCTATATTTGAATGTTGCT 57.976 29.630 0.00 0.00 39.40 3.91
45 46 9.643693 CAAAACTCCTATATTTGAATGTTGCTT 57.356 29.630 0.00 0.00 36.41 3.91
47 48 9.860898 AAACTCCTATATTTGAATGTTGCTTTC 57.139 29.630 0.00 0.00 0.00 2.62
48 49 8.579850 ACTCCTATATTTGAATGTTGCTTTCA 57.420 30.769 0.00 0.00 0.00 2.69
49 50 9.193806 ACTCCTATATTTGAATGTTGCTTTCAT 57.806 29.630 0.00 0.00 33.37 2.57
50 51 9.459640 CTCCTATATTTGAATGTTGCTTTCATG 57.540 33.333 0.00 0.00 33.37 3.07
51 52 8.415553 TCCTATATTTGAATGTTGCTTTCATGG 58.584 33.333 0.00 0.00 33.37 3.66
52 53 7.654520 CCTATATTTGAATGTTGCTTTCATGGG 59.345 37.037 0.00 0.00 33.37 4.00
53 54 4.686191 TTTGAATGTTGCTTTCATGGGT 57.314 36.364 0.00 0.00 33.37 4.51
54 55 3.663995 TGAATGTTGCTTTCATGGGTG 57.336 42.857 0.00 0.00 0.00 4.61
55 56 3.229293 TGAATGTTGCTTTCATGGGTGA 58.771 40.909 0.00 0.00 0.00 4.02
56 57 3.640498 TGAATGTTGCTTTCATGGGTGAA 59.360 39.130 0.00 0.00 42.41 3.18
68 69 6.817765 TTCATGGGTGAAAGAAGACATTAC 57.182 37.500 0.00 0.00 41.22 1.89
69 70 6.126863 TCATGGGTGAAAGAAGACATTACT 57.873 37.500 0.00 0.00 0.00 2.24
70 71 6.173339 TCATGGGTGAAAGAAGACATTACTC 58.827 40.000 0.00 0.00 0.00 2.59
71 72 5.560722 TGGGTGAAAGAAGACATTACTCA 57.439 39.130 0.00 0.00 0.00 3.41
72 73 5.935945 TGGGTGAAAGAAGACATTACTCAA 58.064 37.500 0.00 0.00 0.00 3.02
73 74 6.361433 TGGGTGAAAGAAGACATTACTCAAA 58.639 36.000 0.00 0.00 0.00 2.69
74 75 6.831353 TGGGTGAAAGAAGACATTACTCAAAA 59.169 34.615 0.00 0.00 0.00 2.44
75 76 7.340743 TGGGTGAAAGAAGACATTACTCAAAAA 59.659 33.333 0.00 0.00 0.00 1.94
76 77 7.862873 GGGTGAAAGAAGACATTACTCAAAAAG 59.137 37.037 0.00 0.00 0.00 2.27
77 78 7.379797 GGTGAAAGAAGACATTACTCAAAAAGC 59.620 37.037 0.00 0.00 0.00 3.51
78 79 7.112148 GTGAAAGAAGACATTACTCAAAAAGCG 59.888 37.037 0.00 0.00 0.00 4.68
79 80 5.613358 AGAAGACATTACTCAAAAAGCGG 57.387 39.130 0.00 0.00 0.00 5.52
80 81 3.831715 AGACATTACTCAAAAAGCGGC 57.168 42.857 0.00 0.00 0.00 6.53
81 82 2.488153 AGACATTACTCAAAAAGCGGCC 59.512 45.455 0.00 0.00 0.00 6.13
82 83 1.199097 ACATTACTCAAAAAGCGGCCG 59.801 47.619 24.05 24.05 0.00 6.13
83 84 0.808755 ATTACTCAAAAAGCGGCCGG 59.191 50.000 29.38 9.14 0.00 6.13
84 85 0.535553 TTACTCAAAAAGCGGCCGGT 60.536 50.000 26.97 26.97 0.00 5.28
85 86 1.231958 TACTCAAAAAGCGGCCGGTG 61.232 55.000 33.14 19.54 0.00 4.94
86 87 3.267597 CTCAAAAAGCGGCCGGTGG 62.268 63.158 33.14 20.19 0.00 4.61
98 99 4.028490 CGGTGGCTAGCACCCCAA 62.028 66.667 22.63 0.00 39.46 4.12
99 100 2.683475 GGTGGCTAGCACCCCAAT 59.317 61.111 18.24 0.00 36.75 3.16
100 101 1.453928 GGTGGCTAGCACCCCAATC 60.454 63.158 18.24 0.00 36.75 2.67
101 102 1.609783 GTGGCTAGCACCCCAATCT 59.390 57.895 18.24 0.00 31.90 2.40
102 103 0.749454 GTGGCTAGCACCCCAATCTG 60.749 60.000 18.24 0.00 31.90 2.90
103 104 0.913934 TGGCTAGCACCCCAATCTGA 60.914 55.000 18.24 0.00 0.00 3.27
104 105 0.255890 GGCTAGCACCCCAATCTGAA 59.744 55.000 18.24 0.00 0.00 3.02
105 106 1.673168 GCTAGCACCCCAATCTGAAG 58.327 55.000 10.63 0.00 0.00 3.02
106 107 1.673168 CTAGCACCCCAATCTGAAGC 58.327 55.000 0.00 0.00 0.00 3.86
107 108 0.107703 TAGCACCCCAATCTGAAGCG 60.108 55.000 0.00 0.00 0.00 4.68
108 109 1.675641 GCACCCCAATCTGAAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
109 110 1.926511 GCACCCCAATCTGAAGCGTG 61.927 60.000 0.00 0.00 0.00 5.34
110 111 0.606401 CACCCCAATCTGAAGCGTGT 60.606 55.000 0.00 0.00 0.00 4.49
111 112 0.321653 ACCCCAATCTGAAGCGTGTC 60.322 55.000 0.00 0.00 0.00 3.67
112 113 0.036010 CCCCAATCTGAAGCGTGTCT 60.036 55.000 0.00 0.00 0.00 3.41
113 114 1.611673 CCCCAATCTGAAGCGTGTCTT 60.612 52.381 0.00 0.00 37.83 3.01
114 115 1.466167 CCCAATCTGAAGCGTGTCTTG 59.534 52.381 0.00 0.00 34.56 3.02
115 116 2.146342 CCAATCTGAAGCGTGTCTTGT 58.854 47.619 0.00 0.00 34.56 3.16
116 117 2.549754 CCAATCTGAAGCGTGTCTTGTT 59.450 45.455 0.00 0.00 34.56 2.83
117 118 3.003689 CCAATCTGAAGCGTGTCTTGTTT 59.996 43.478 0.00 0.00 34.56 2.83
118 119 4.213270 CCAATCTGAAGCGTGTCTTGTTTA 59.787 41.667 0.00 0.00 34.56 2.01
119 120 5.377358 CAATCTGAAGCGTGTCTTGTTTAG 58.623 41.667 0.00 0.00 34.56 1.85
120 121 3.390135 TCTGAAGCGTGTCTTGTTTAGG 58.610 45.455 0.00 0.00 34.56 2.69
121 122 2.480419 CTGAAGCGTGTCTTGTTTAGGG 59.520 50.000 0.00 0.00 34.56 3.53
122 123 1.197036 GAAGCGTGTCTTGTTTAGGGC 59.803 52.381 0.00 0.00 34.56 5.19
123 124 0.396811 AGCGTGTCTTGTTTAGGGCT 59.603 50.000 0.00 0.00 0.00 5.19
124 125 1.621814 AGCGTGTCTTGTTTAGGGCTA 59.378 47.619 0.00 0.00 0.00 3.93
125 126 2.236395 AGCGTGTCTTGTTTAGGGCTAT 59.764 45.455 0.00 0.00 0.00 2.97
126 127 3.007635 GCGTGTCTTGTTTAGGGCTATT 58.992 45.455 0.00 0.00 0.00 1.73
127 128 3.439129 GCGTGTCTTGTTTAGGGCTATTT 59.561 43.478 0.00 0.00 0.00 1.40
128 129 4.632688 GCGTGTCTTGTTTAGGGCTATTTA 59.367 41.667 0.00 0.00 0.00 1.40
129 130 5.296035 GCGTGTCTTGTTTAGGGCTATTTAT 59.704 40.000 0.00 0.00 0.00 1.40
130 131 6.183360 GCGTGTCTTGTTTAGGGCTATTTATT 60.183 38.462 0.00 0.00 0.00 1.40
131 132 7.011669 GCGTGTCTTGTTTAGGGCTATTTATTA 59.988 37.037 0.00 0.00 0.00 0.98
132 133 8.885722 CGTGTCTTGTTTAGGGCTATTTATTAA 58.114 33.333 0.00 0.00 0.00 1.40
163 164 8.974060 TCTTTTTCTTTGTAGATAACCACTGT 57.026 30.769 0.00 0.00 0.00 3.55
166 167 7.878477 TTTCTTTGTAGATAACCACTGTACG 57.122 36.000 0.00 0.00 0.00 3.67
167 168 6.579666 TCTTTGTAGATAACCACTGTACGT 57.420 37.500 0.00 0.00 0.00 3.57
168 169 7.686438 TCTTTGTAGATAACCACTGTACGTA 57.314 36.000 0.00 0.00 0.00 3.57
169 170 8.284945 TCTTTGTAGATAACCACTGTACGTAT 57.715 34.615 0.00 0.00 0.00 3.06
170 171 8.742777 TCTTTGTAGATAACCACTGTACGTATT 58.257 33.333 0.00 0.00 0.00 1.89
171 172 9.362539 CTTTGTAGATAACCACTGTACGTATTT 57.637 33.333 0.00 0.00 0.00 1.40
172 173 8.915871 TTGTAGATAACCACTGTACGTATTTC 57.084 34.615 0.00 0.00 0.00 2.17
173 174 8.054152 TGTAGATAACCACTGTACGTATTTCA 57.946 34.615 0.00 0.00 0.00 2.69
174 175 8.522003 TGTAGATAACCACTGTACGTATTTCAA 58.478 33.333 0.00 0.00 0.00 2.69
175 176 9.525409 GTAGATAACCACTGTACGTATTTCAAT 57.475 33.333 0.00 0.00 0.00 2.57
177 178 9.444600 AGATAACCACTGTACGTATTTCAATTT 57.555 29.630 0.00 0.00 0.00 1.82
180 181 8.791355 AACCACTGTACGTATTTCAATTTTTC 57.209 30.769 0.00 0.00 0.00 2.29
181 182 7.364970 ACCACTGTACGTATTTCAATTTTTCC 58.635 34.615 0.00 0.00 0.00 3.13
182 183 7.229907 ACCACTGTACGTATTTCAATTTTTCCT 59.770 33.333 0.00 0.00 0.00 3.36
183 184 8.079809 CCACTGTACGTATTTCAATTTTTCCTT 58.920 33.333 0.00 0.00 0.00 3.36
202 203 8.710835 TTTCCTTAATTTTTATGAAATCGGCC 57.289 30.769 0.00 0.00 0.00 6.13
203 204 7.654022 TCCTTAATTTTTATGAAATCGGCCT 57.346 32.000 0.00 0.00 0.00 5.19
204 205 7.712797 TCCTTAATTTTTATGAAATCGGCCTC 58.287 34.615 0.00 0.00 0.00 4.70
205 206 7.559897 TCCTTAATTTTTATGAAATCGGCCTCT 59.440 33.333 0.00 0.00 0.00 3.69
206 207 7.862873 CCTTAATTTTTATGAAATCGGCCTCTC 59.137 37.037 0.00 0.00 0.00 3.20
207 208 8.519799 TTAATTTTTATGAAATCGGCCTCTCT 57.480 30.769 0.00 0.00 0.00 3.10
208 209 7.410120 AATTTTTATGAAATCGGCCTCTCTT 57.590 32.000 0.00 0.00 0.00 2.85
209 210 6.834168 TTTTTATGAAATCGGCCTCTCTTT 57.166 33.333 0.00 0.00 0.00 2.52
210 211 5.818136 TTTATGAAATCGGCCTCTCTTTG 57.182 39.130 0.00 0.00 0.00 2.77
211 212 3.634397 ATGAAATCGGCCTCTCTTTGA 57.366 42.857 0.00 0.00 0.00 2.69
212 213 2.699954 TGAAATCGGCCTCTCTTTGAC 58.300 47.619 0.00 0.00 0.00 3.18
213 214 2.303022 TGAAATCGGCCTCTCTTTGACT 59.697 45.455 0.00 0.00 0.00 3.41
214 215 3.244561 TGAAATCGGCCTCTCTTTGACTT 60.245 43.478 0.00 0.00 0.00 3.01
215 216 4.020573 TGAAATCGGCCTCTCTTTGACTTA 60.021 41.667 0.00 0.00 0.00 2.24
216 217 4.553330 AATCGGCCTCTCTTTGACTTAA 57.447 40.909 0.00 0.00 0.00 1.85
217 218 4.553330 ATCGGCCTCTCTTTGACTTAAA 57.447 40.909 0.00 0.00 0.00 1.52
218 219 3.926616 TCGGCCTCTCTTTGACTTAAAG 58.073 45.455 0.00 0.00 45.77 1.85
231 232 6.635030 TTGACTTAAAGAAAGAAGGAAGCC 57.365 37.500 0.00 0.00 38.67 4.35
232 233 4.755123 TGACTTAAAGAAAGAAGGAAGCCG 59.245 41.667 0.00 0.00 38.67 5.52
233 234 4.072839 ACTTAAAGAAAGAAGGAAGCCGG 58.927 43.478 0.00 0.00 38.67 6.13
234 235 1.248486 AAAGAAAGAAGGAAGCCGGC 58.752 50.000 21.89 21.89 0.00 6.13
235 236 0.609406 AAGAAAGAAGGAAGCCGGCC 60.609 55.000 26.15 8.83 0.00 6.13
236 237 1.002011 GAAAGAAGGAAGCCGGCCT 60.002 57.895 26.15 11.38 37.35 5.19
243 244 2.982130 GAAGCCGGCCTTCTCTGA 59.018 61.111 26.15 0.00 45.27 3.27
244 245 1.153469 GAAGCCGGCCTTCTCTGAG 60.153 63.158 26.15 0.00 45.27 3.35
245 246 3.322318 AAGCCGGCCTTCTCTGAGC 62.322 63.158 26.15 0.00 0.00 4.26
246 247 4.847444 GCCGGCCTTCTCTGAGCC 62.847 72.222 18.11 0.00 43.53 4.70
247 248 3.080121 CCGGCCTTCTCTGAGCCT 61.080 66.667 0.00 0.00 44.84 4.58
248 249 2.186384 CGGCCTTCTCTGAGCCTG 59.814 66.667 0.00 0.00 44.84 4.85
249 250 2.354401 CGGCCTTCTCTGAGCCTGA 61.354 63.158 0.00 0.00 44.84 3.86
250 251 1.684386 CGGCCTTCTCTGAGCCTGAT 61.684 60.000 0.00 0.00 44.84 2.90
251 252 0.106521 GGCCTTCTCTGAGCCTGATC 59.893 60.000 0.00 0.00 43.62 2.92
252 253 1.122227 GCCTTCTCTGAGCCTGATCT 58.878 55.000 0.00 0.00 0.00 2.75
253 254 1.069049 GCCTTCTCTGAGCCTGATCTC 59.931 57.143 0.00 0.00 0.00 2.75
254 255 1.337703 CCTTCTCTGAGCCTGATCTCG 59.662 57.143 0.00 0.00 35.90 4.04
255 256 2.023673 CTTCTCTGAGCCTGATCTCGT 58.976 52.381 0.00 0.00 35.90 4.18
256 257 1.674359 TCTCTGAGCCTGATCTCGTC 58.326 55.000 0.00 0.00 35.90 4.20
257 258 0.667993 CTCTGAGCCTGATCTCGTCC 59.332 60.000 0.00 0.00 35.90 4.79
258 259 1.098129 TCTGAGCCTGATCTCGTCCG 61.098 60.000 0.00 0.00 35.90 4.79
259 260 1.077716 TGAGCCTGATCTCGTCCGA 60.078 57.895 0.00 0.00 35.90 4.55
260 261 1.357334 GAGCCTGATCTCGTCCGAC 59.643 63.158 0.00 0.00 0.00 4.79
261 262 2.065906 GAGCCTGATCTCGTCCGACC 62.066 65.000 0.00 0.00 0.00 4.79
262 263 3.121019 CCTGATCTCGTCCGACCC 58.879 66.667 0.00 0.00 0.00 4.46
263 264 1.454111 CCTGATCTCGTCCGACCCT 60.454 63.158 0.00 0.00 0.00 4.34
264 265 1.729470 CCTGATCTCGTCCGACCCTG 61.729 65.000 0.00 0.00 0.00 4.45
265 266 1.001269 TGATCTCGTCCGACCCTGT 60.001 57.895 0.00 0.00 0.00 4.00
266 267 0.253894 TGATCTCGTCCGACCCTGTA 59.746 55.000 0.00 0.00 0.00 2.74
267 268 1.340308 TGATCTCGTCCGACCCTGTAA 60.340 52.381 0.00 0.00 0.00 2.41
268 269 1.747355 GATCTCGTCCGACCCTGTAAA 59.253 52.381 0.00 0.00 0.00 2.01
269 270 0.883833 TCTCGTCCGACCCTGTAAAC 59.116 55.000 0.00 0.00 0.00 2.01
270 271 0.455633 CTCGTCCGACCCTGTAAACG 60.456 60.000 0.00 0.00 0.00 3.60
271 272 0.888736 TCGTCCGACCCTGTAAACGA 60.889 55.000 0.00 0.00 36.86 3.85
272 273 0.039256 CGTCCGACCCTGTAAACGAA 60.039 55.000 0.00 0.00 32.17 3.85
273 274 1.706443 GTCCGACCCTGTAAACGAAG 58.294 55.000 0.00 0.00 0.00 3.79
274 275 1.270550 GTCCGACCCTGTAAACGAAGA 59.729 52.381 0.00 0.00 0.00 2.87
275 276 1.270550 TCCGACCCTGTAAACGAAGAC 59.729 52.381 0.00 0.00 0.00 3.01
276 277 1.000060 CCGACCCTGTAAACGAAGACA 60.000 52.381 0.00 0.00 0.00 3.41
277 278 2.353406 CCGACCCTGTAAACGAAGACAT 60.353 50.000 0.00 0.00 0.00 3.06
278 279 3.323243 CGACCCTGTAAACGAAGACATT 58.677 45.455 0.00 0.00 0.00 2.71
279 280 4.487948 CGACCCTGTAAACGAAGACATTA 58.512 43.478 0.00 0.00 0.00 1.90
280 281 4.325472 CGACCCTGTAAACGAAGACATTAC 59.675 45.833 0.00 0.00 0.00 1.89
281 282 5.476614 GACCCTGTAAACGAAGACATTACT 58.523 41.667 0.00 0.00 32.18 2.24
282 283 5.476614 ACCCTGTAAACGAAGACATTACTC 58.523 41.667 0.00 0.00 32.18 2.59
283 284 5.011329 ACCCTGTAAACGAAGACATTACTCA 59.989 40.000 0.00 0.00 32.18 3.41
284 285 5.929992 CCCTGTAAACGAAGACATTACTCAA 59.070 40.000 0.00 0.00 32.18 3.02
285 286 6.090898 CCCTGTAAACGAAGACATTACTCAAG 59.909 42.308 0.00 0.00 32.18 3.02
286 287 6.866770 CCTGTAAACGAAGACATTACTCAAGA 59.133 38.462 0.00 0.00 32.18 3.02
287 288 7.384115 CCTGTAAACGAAGACATTACTCAAGAA 59.616 37.037 0.00 0.00 32.18 2.52
288 289 8.294341 TGTAAACGAAGACATTACTCAAGAAG 57.706 34.615 0.00 0.00 32.18 2.85
289 290 5.847670 AACGAAGACATTACTCAAGAAGC 57.152 39.130 0.00 0.00 0.00 3.86
290 291 4.883083 ACGAAGACATTACTCAAGAAGCA 58.117 39.130 0.00 0.00 0.00 3.91
291 292 4.926238 ACGAAGACATTACTCAAGAAGCAG 59.074 41.667 0.00 0.00 0.00 4.24
292 293 4.926238 CGAAGACATTACTCAAGAAGCAGT 59.074 41.667 0.00 0.00 0.00 4.40
293 294 5.406780 CGAAGACATTACTCAAGAAGCAGTT 59.593 40.000 0.00 0.00 0.00 3.16
294 295 6.551385 AAGACATTACTCAAGAAGCAGTTG 57.449 37.500 0.00 0.00 0.00 3.16
295 296 4.999950 AGACATTACTCAAGAAGCAGTTGG 59.000 41.667 0.00 0.00 0.00 3.77
296 297 3.503748 ACATTACTCAAGAAGCAGTTGGC 59.496 43.478 0.00 0.00 45.30 4.52
313 314 2.281070 CGGCTTGGCGGCTATCAT 60.281 61.111 11.43 0.00 35.72 2.45
314 315 2.320587 CGGCTTGGCGGCTATCATC 61.321 63.158 11.43 0.00 35.72 2.92
315 316 1.227943 GGCTTGGCGGCTATCATCA 60.228 57.895 11.43 0.00 34.85 3.07
316 317 1.510480 GGCTTGGCGGCTATCATCAC 61.510 60.000 11.43 0.00 34.85 3.06
317 318 1.510480 GCTTGGCGGCTATCATCACC 61.510 60.000 11.43 0.00 0.00 4.02
318 319 0.179048 CTTGGCGGCTATCATCACCA 60.179 55.000 11.43 0.00 0.00 4.17
319 320 0.463654 TTGGCGGCTATCATCACCAC 60.464 55.000 11.43 0.00 0.00 4.16
320 321 1.146041 GGCGGCTATCATCACCACA 59.854 57.895 0.00 0.00 0.00 4.17
321 322 0.463654 GGCGGCTATCATCACCACAA 60.464 55.000 0.00 0.00 0.00 3.33
322 323 1.597742 GCGGCTATCATCACCACAAT 58.402 50.000 0.00 0.00 0.00 2.71
323 324 1.265095 GCGGCTATCATCACCACAATG 59.735 52.381 0.00 0.00 0.00 2.82
324 325 2.564771 CGGCTATCATCACCACAATGT 58.435 47.619 0.00 0.00 0.00 2.71
325 326 3.727726 CGGCTATCATCACCACAATGTA 58.272 45.455 0.00 0.00 0.00 2.29
326 327 4.126437 CGGCTATCATCACCACAATGTAA 58.874 43.478 0.00 0.00 0.00 2.41
327 328 4.574421 CGGCTATCATCACCACAATGTAAA 59.426 41.667 0.00 0.00 0.00 2.01
328 329 5.504010 CGGCTATCATCACCACAATGTAAAC 60.504 44.000 0.00 0.00 0.00 2.01
329 330 5.590259 GGCTATCATCACCACAATGTAAACT 59.410 40.000 0.00 0.00 0.00 2.66
330 331 6.458751 GGCTATCATCACCACAATGTAAACTG 60.459 42.308 0.00 0.00 0.00 3.16
331 332 6.094048 GCTATCATCACCACAATGTAAACTGT 59.906 38.462 0.00 0.00 0.00 3.55
332 333 5.687770 TCATCACCACAATGTAAACTGTG 57.312 39.130 0.00 0.00 42.14 3.66
333 334 3.980646 TCACCACAATGTAAACTGTGC 57.019 42.857 0.00 0.00 41.33 4.57
334 335 3.550820 TCACCACAATGTAAACTGTGCT 58.449 40.909 0.00 0.00 41.33 4.40
335 336 3.951037 TCACCACAATGTAAACTGTGCTT 59.049 39.130 0.00 0.00 41.33 3.91
336 337 4.043750 CACCACAATGTAAACTGTGCTTG 58.956 43.478 0.00 0.00 41.33 4.01
337 338 3.699038 ACCACAATGTAAACTGTGCTTGT 59.301 39.130 0.00 0.00 41.33 3.16
338 339 4.159506 ACCACAATGTAAACTGTGCTTGTT 59.840 37.500 0.00 0.00 41.33 2.83
339 340 5.108517 CCACAATGTAAACTGTGCTTGTTT 58.891 37.500 0.00 7.27 41.33 2.83
340 341 6.127591 ACCACAATGTAAACTGTGCTTGTTTA 60.128 34.615 0.00 0.00 41.33 2.01
341 342 6.417635 CCACAATGTAAACTGTGCTTGTTTAG 59.582 38.462 8.82 0.00 41.33 1.85
342 343 6.417635 CACAATGTAAACTGTGCTTGTTTAGG 59.582 38.462 8.82 4.37 39.56 2.69
343 344 5.705609 ATGTAAACTGTGCTTGTTTAGGG 57.294 39.130 8.82 0.00 39.56 3.53
344 345 4.528920 TGTAAACTGTGCTTGTTTAGGGT 58.471 39.130 8.82 0.00 39.56 4.34
345 346 4.951094 TGTAAACTGTGCTTGTTTAGGGTT 59.049 37.500 8.82 0.00 39.56 4.11
346 347 6.120905 TGTAAACTGTGCTTGTTTAGGGTTA 58.879 36.000 8.82 0.00 39.56 2.85
347 348 6.773685 TGTAAACTGTGCTTGTTTAGGGTTAT 59.226 34.615 8.82 0.00 39.56 1.89
348 349 6.724893 AAACTGTGCTTGTTTAGGGTTATT 57.275 33.333 0.00 0.00 36.07 1.40
349 350 6.724893 AACTGTGCTTGTTTAGGGTTATTT 57.275 33.333 0.00 0.00 0.00 1.40
350 351 6.084326 ACTGTGCTTGTTTAGGGTTATTTG 57.916 37.500 0.00 0.00 0.00 2.32
351 352 5.596772 ACTGTGCTTGTTTAGGGTTATTTGT 59.403 36.000 0.00 0.00 0.00 2.83
352 353 6.097696 ACTGTGCTTGTTTAGGGTTATTTGTT 59.902 34.615 0.00 0.00 0.00 2.83
353 354 6.879400 TGTGCTTGTTTAGGGTTATTTGTTT 58.121 32.000 0.00 0.00 0.00 2.83
354 355 6.981559 TGTGCTTGTTTAGGGTTATTTGTTTC 59.018 34.615 0.00 0.00 0.00 2.78
355 356 6.422701 GTGCTTGTTTAGGGTTATTTGTTTCC 59.577 38.462 0.00 0.00 0.00 3.13
356 357 6.325286 TGCTTGTTTAGGGTTATTTGTTTCCT 59.675 34.615 0.00 0.00 0.00 3.36
357 358 7.147637 TGCTTGTTTAGGGTTATTTGTTTCCTT 60.148 33.333 0.00 0.00 0.00 3.36
358 359 7.713507 GCTTGTTTAGGGTTATTTGTTTCCTTT 59.286 33.333 0.00 0.00 0.00 3.11
359 360 9.607988 CTTGTTTAGGGTTATTTGTTTCCTTTT 57.392 29.630 0.00 0.00 0.00 2.27
360 361 9.602568 TTGTTTAGGGTTATTTGTTTCCTTTTC 57.397 29.630 0.00 0.00 0.00 2.29
361 362 8.983789 TGTTTAGGGTTATTTGTTTCCTTTTCT 58.016 29.630 0.00 0.00 0.00 2.52
362 363 9.472361 GTTTAGGGTTATTTGTTTCCTTTTCTC 57.528 33.333 0.00 0.00 0.00 2.87
363 364 8.770010 TTAGGGTTATTTGTTTCCTTTTCTCA 57.230 30.769 0.00 0.00 0.00 3.27
364 365 7.669089 AGGGTTATTTGTTTCCTTTTCTCAA 57.331 32.000 0.00 0.00 0.00 3.02
365 366 8.084985 AGGGTTATTTGTTTCCTTTTCTCAAA 57.915 30.769 0.00 0.00 33.61 2.69
366 367 8.544622 AGGGTTATTTGTTTCCTTTTCTCAAAA 58.455 29.630 0.00 0.00 32.99 2.44
367 368 9.168451 GGGTTATTTGTTTCCTTTTCTCAAAAA 57.832 29.630 0.00 0.00 32.99 1.94
389 390 3.449746 AAAAATAGTAGCCACCAGCCA 57.550 42.857 0.00 0.00 45.47 4.75
390 391 2.717639 AAATAGTAGCCACCAGCCAG 57.282 50.000 0.00 0.00 45.47 4.85
391 392 1.584724 AATAGTAGCCACCAGCCAGT 58.415 50.000 0.00 0.00 45.47 4.00
392 393 1.584724 ATAGTAGCCACCAGCCAGTT 58.415 50.000 0.00 0.00 45.47 3.16
393 394 0.613260 TAGTAGCCACCAGCCAGTTG 59.387 55.000 0.00 0.00 45.47 3.16
394 395 1.127567 AGTAGCCACCAGCCAGTTGA 61.128 55.000 0.00 0.00 45.47 3.18
395 396 0.674895 GTAGCCACCAGCCAGTTGAG 60.675 60.000 0.00 0.00 45.47 3.02
396 397 1.841302 TAGCCACCAGCCAGTTGAGG 61.841 60.000 0.00 0.00 45.47 3.86
404 405 4.972875 CCAGTTGAGGCTGATCCC 57.027 61.111 0.00 0.00 38.70 3.85
405 406 1.225704 CCAGTTGAGGCTGATCCCC 59.774 63.158 0.00 0.00 38.70 4.81
406 407 1.153289 CAGTTGAGGCTGATCCCCG 60.153 63.158 0.00 0.00 38.70 5.73
407 408 2.190578 GTTGAGGCTGATCCCCGG 59.809 66.667 0.00 0.00 34.51 5.73
408 409 3.797353 TTGAGGCTGATCCCCGGC 61.797 66.667 0.00 0.00 46.43 6.13
454 455 0.234884 GGAGCGTTGACAAAGGAACG 59.765 55.000 3.27 0.00 46.07 3.95
501 502 4.394712 GTGTGCCCTCCCCAGTCG 62.395 72.222 0.00 0.00 0.00 4.18
521 522 1.341383 GCCATGGTTCCCAGTTGAGAT 60.341 52.381 14.67 0.00 36.75 2.75
525 526 1.630369 TGGTTCCCAGTTGAGATCCTG 59.370 52.381 0.00 0.00 0.00 3.86
530 531 0.393537 CCAGTTGAGATCCTGCCCAC 60.394 60.000 0.00 0.00 0.00 4.61
532 533 0.617413 AGTTGAGATCCTGCCCACAG 59.383 55.000 0.00 0.00 44.05 3.66
613 614 0.033601 ACTGACAGCCTCCTCGATCT 60.034 55.000 1.25 0.00 0.00 2.75
720 778 1.647545 CGCGGCAACCAGAACATCAT 61.648 55.000 0.00 0.00 0.00 2.45
721 779 0.099436 GCGGCAACCAGAACATCATC 59.901 55.000 0.00 0.00 0.00 2.92
722 780 1.452110 CGGCAACCAGAACATCATCA 58.548 50.000 0.00 0.00 0.00 3.07
723 781 1.131126 CGGCAACCAGAACATCATCAC 59.869 52.381 0.00 0.00 0.00 3.06
724 782 2.161855 GGCAACCAGAACATCATCACA 58.838 47.619 0.00 0.00 0.00 3.58
725 783 2.163010 GGCAACCAGAACATCATCACAG 59.837 50.000 0.00 0.00 0.00 3.66
726 784 3.076621 GCAACCAGAACATCATCACAGA 58.923 45.455 0.00 0.00 0.00 3.41
727 785 3.120060 GCAACCAGAACATCATCACAGAC 60.120 47.826 0.00 0.00 0.00 3.51
729 787 1.662629 CCAGAACATCATCACAGACGC 59.337 52.381 0.00 0.00 0.00 5.19
731 789 0.647410 GAACATCATCACAGACGCCG 59.353 55.000 0.00 0.00 0.00 6.46
944 1056 0.171231 CAACTCCGTGATCGAGAGCA 59.829 55.000 3.44 0.00 37.65 4.26
947 1068 1.378646 TCCGTGATCGAGAGCACCT 60.379 57.895 14.73 0.00 44.19 4.00
1016 1142 2.742372 GATGGTGCTCAACGGCGT 60.742 61.111 6.77 6.77 34.52 5.68
1017 1143 2.281484 ATGGTGCTCAACGGCGTT 60.281 55.556 21.19 21.19 34.52 4.84
1080 1206 3.622514 GGAGACGGTGAGAGCCAT 58.377 61.111 0.00 0.00 0.00 4.40
1103 1345 7.010552 CCATTGTTACTCCTTGATCTTCTTACG 59.989 40.741 0.00 0.00 0.00 3.18
1104 1346 5.962433 TGTTACTCCTTGATCTTCTTACGG 58.038 41.667 0.00 0.00 0.00 4.02
1106 1348 6.380274 TGTTACTCCTTGATCTTCTTACGGAT 59.620 38.462 0.00 0.00 0.00 4.18
1108 1350 5.205056 ACTCCTTGATCTTCTTACGGATCT 58.795 41.667 0.00 0.00 39.09 2.75
1110 1352 4.276183 TCCTTGATCTTCTTACGGATCTCG 59.724 45.833 0.00 0.00 45.88 4.04
1112 1354 3.215151 TGATCTTCTTACGGATCTCGCT 58.785 45.455 0.00 0.00 43.89 4.93
1113 1355 4.386711 TGATCTTCTTACGGATCTCGCTA 58.613 43.478 0.00 0.00 43.89 4.26
1114 1356 4.452795 TGATCTTCTTACGGATCTCGCTAG 59.547 45.833 0.00 0.00 43.89 3.42
1130 1447 3.002042 TCGCTAGCTACTACATTGTCGTC 59.998 47.826 13.93 0.00 0.00 4.20
1134 1451 5.908499 GCTAGCTACTACATTGTCGTCTAAC 59.092 44.000 7.70 0.00 0.00 2.34
1141 1498 4.537135 ACATTGTCGTCTAACCTGACAT 57.463 40.909 0.00 0.00 41.80 3.06
1142 1499 5.654603 ACATTGTCGTCTAACCTGACATA 57.345 39.130 0.00 0.00 41.80 2.29
1146 1503 3.120095 TGTCGTCTAACCTGACATACGTG 60.120 47.826 0.00 0.00 37.69 4.49
1514 2248 4.546637 GTCCAGACGGTGTACACG 57.453 61.111 19.41 16.23 37.36 4.49
1733 2479 3.482472 CGAAATCTCATCACGTTACGGAG 59.518 47.826 10.20 6.08 0.00 4.63
2173 2952 0.603975 ACAAGCTCGACTTCAAGGCC 60.604 55.000 0.00 0.00 36.04 5.19
2330 3109 2.494918 GCTGATGCGTCCCGTAGT 59.505 61.111 2.83 0.00 0.00 2.73
2331 3110 1.878522 GCTGATGCGTCCCGTAGTG 60.879 63.158 2.83 0.00 0.00 2.74
2336 3211 0.322322 ATGCGTCCCGTAGTGGAAAA 59.678 50.000 0.00 0.00 42.00 2.29
2357 3237 7.712639 GGAAAATGACTGCTGAGAATGATAGTA 59.287 37.037 0.00 0.00 0.00 1.82
2384 3264 3.003275 CGTGACAACAGGCTTAACATTGT 59.997 43.478 0.00 0.00 36.24 2.71
2385 3265 4.290155 GTGACAACAGGCTTAACATTGTG 58.710 43.478 0.00 0.00 33.76 3.33
2386 3266 3.243367 TGACAACAGGCTTAACATTGTGC 60.243 43.478 0.00 0.00 33.76 4.57
2387 3267 2.958355 ACAACAGGCTTAACATTGTGCT 59.042 40.909 0.00 0.00 32.42 4.40
2388 3268 3.384467 ACAACAGGCTTAACATTGTGCTT 59.616 39.130 0.00 0.00 32.42 3.91
2389 3269 4.141959 ACAACAGGCTTAACATTGTGCTTT 60.142 37.500 0.00 0.00 32.42 3.51
2390 3270 3.981211 ACAGGCTTAACATTGTGCTTTG 58.019 40.909 0.00 0.00 0.00 2.77
2391 3271 3.384467 ACAGGCTTAACATTGTGCTTTGT 59.616 39.130 0.00 0.00 0.00 2.83
2392 3272 4.141959 ACAGGCTTAACATTGTGCTTTGTT 60.142 37.500 0.00 0.00 39.32 2.83
2393 3273 4.209703 CAGGCTTAACATTGTGCTTTGTTG 59.790 41.667 0.00 0.00 36.75 3.33
2394 3274 4.099266 AGGCTTAACATTGTGCTTTGTTGA 59.901 37.500 0.00 0.00 36.75 3.18
2395 3275 4.990426 GGCTTAACATTGTGCTTTGTTGAT 59.010 37.500 0.00 0.00 36.75 2.57
2396 3276 5.107375 GGCTTAACATTGTGCTTTGTTGATG 60.107 40.000 0.00 0.00 36.75 3.07
2397 3277 5.613142 GCTTAACATTGTGCTTTGTTGATGC 60.613 40.000 0.00 0.00 36.75 3.91
2398 3278 3.738830 ACATTGTGCTTTGTTGATGCT 57.261 38.095 0.00 0.00 0.00 3.79
2399 3279 4.062677 ACATTGTGCTTTGTTGATGCTT 57.937 36.364 0.00 0.00 0.00 3.91
2400 3280 4.053295 ACATTGTGCTTTGTTGATGCTTC 58.947 39.130 0.00 0.00 0.00 3.86
2401 3281 2.798976 TGTGCTTTGTTGATGCTTCC 57.201 45.000 0.00 0.00 0.00 3.46
2402 3282 2.309613 TGTGCTTTGTTGATGCTTCCT 58.690 42.857 0.00 0.00 0.00 3.36
2403 3283 2.694628 TGTGCTTTGTTGATGCTTCCTT 59.305 40.909 0.00 0.00 0.00 3.36
2404 3284 3.243501 TGTGCTTTGTTGATGCTTCCTTC 60.244 43.478 0.00 0.00 0.00 3.46
2405 3285 2.030893 TGCTTTGTTGATGCTTCCTTCG 60.031 45.455 0.00 0.00 0.00 3.79
2406 3286 2.226437 GCTTTGTTGATGCTTCCTTCGA 59.774 45.455 0.00 0.00 0.00 3.71
2407 3287 3.304659 GCTTTGTTGATGCTTCCTTCGAA 60.305 43.478 0.00 0.00 0.00 3.71
2408 3288 3.896648 TTGTTGATGCTTCCTTCGAAC 57.103 42.857 0.00 0.00 0.00 3.95
2409 3289 2.844946 TGTTGATGCTTCCTTCGAACA 58.155 42.857 0.00 0.00 0.00 3.18
2410 3290 3.210227 TGTTGATGCTTCCTTCGAACAA 58.790 40.909 0.00 0.00 0.00 2.83
2411 3291 3.629855 TGTTGATGCTTCCTTCGAACAAA 59.370 39.130 0.00 0.00 0.00 2.83
2412 3292 4.278170 TGTTGATGCTTCCTTCGAACAAAT 59.722 37.500 0.00 0.00 0.00 2.32
2415 3295 4.518590 TGATGCTTCCTTCGAACAAATCAA 59.481 37.500 0.00 0.00 0.00 2.57
2425 3305 8.955388 TCCTTCGAACAAATCAAATTGATCATA 58.045 29.630 9.11 0.00 35.76 2.15
2446 3327 7.105588 TCATAATTCACTGCAACAGTATCACT 58.894 34.615 0.00 0.00 43.43 3.41
2461 3342 6.286758 CAGTATCACTGTAATCAGCTGGAAT 58.713 40.000 15.13 0.00 44.77 3.01
2462 3343 6.202379 CAGTATCACTGTAATCAGCTGGAATG 59.798 42.308 15.13 3.51 44.77 2.67
2463 3344 4.558226 TCACTGTAATCAGCTGGAATGT 57.442 40.909 15.13 3.18 44.77 2.71
2465 3346 6.048732 TCACTGTAATCAGCTGGAATGTTA 57.951 37.500 15.13 3.44 44.77 2.41
2466 3347 5.874810 TCACTGTAATCAGCTGGAATGTTAC 59.125 40.000 15.13 14.58 44.77 2.50
2473 3377 4.130857 TCAGCTGGAATGTTACGTTTTCA 58.869 39.130 15.13 0.00 0.00 2.69
2479 3384 5.812652 TGGAATGTTACGTTTTCACACTTC 58.187 37.500 0.00 0.00 0.00 3.01
2493 3398 5.673337 TCACACTTCTCCTTTTCAAATCG 57.327 39.130 0.00 0.00 0.00 3.34
2502 3408 4.389374 TCCTTTTCAAATCGCTTCTCTGT 58.611 39.130 0.00 0.00 0.00 3.41
2517 3423 5.122869 GCTTCTCTGTGTATGAAATGCTGAA 59.877 40.000 0.00 0.00 0.00 3.02
2530 3436 0.625316 TGCTGAATATGTGCCCCTGT 59.375 50.000 0.00 0.00 0.00 4.00
2562 3468 8.559536 ACATGTGTTCTACTGTAAATTCAGTTG 58.440 33.333 0.00 4.22 44.92 3.16
2569 3475 3.056607 ACTGTAAATTCAGTTGGGCATGC 60.057 43.478 9.90 9.90 44.92 4.06
2588 3508 2.952978 TGCCGTTGTTGTAACTCCAAAT 59.047 40.909 0.00 0.00 0.00 2.32
2589 3509 3.243234 TGCCGTTGTTGTAACTCCAAATG 60.243 43.478 0.00 0.00 0.00 2.32
2590 3510 3.243267 GCCGTTGTTGTAACTCCAAATGT 60.243 43.478 0.00 0.00 0.00 2.71
2591 3511 4.735283 GCCGTTGTTGTAACTCCAAATGTT 60.735 41.667 0.00 0.00 0.00 2.71
2592 3512 5.344884 CCGTTGTTGTAACTCCAAATGTTT 58.655 37.500 0.00 0.00 0.00 2.83
2593 3513 5.457473 CCGTTGTTGTAACTCCAAATGTTTC 59.543 40.000 0.00 0.00 0.00 2.78
2594 3514 6.030849 CGTTGTTGTAACTCCAAATGTTTCA 58.969 36.000 0.00 0.00 0.00 2.69
2595 3515 6.020995 CGTTGTTGTAACTCCAAATGTTTCAC 60.021 38.462 0.00 0.00 0.00 3.18
2596 3516 5.897050 TGTTGTAACTCCAAATGTTTCACC 58.103 37.500 0.00 0.00 0.00 4.02
2613 3533 2.667318 CCGTTGCCGCTACACTGTG 61.667 63.158 6.19 6.19 0.00 3.66
2712 3641 4.167307 GGGTGAAGGAATTAGTGGGGATTA 59.833 45.833 0.00 0.00 0.00 1.75
2722 3651 0.623617 GTGGGGATTAGGTGAGGGGT 60.624 60.000 0.00 0.00 0.00 4.95
2723 3652 0.623324 TGGGGATTAGGTGAGGGGTG 60.623 60.000 0.00 0.00 0.00 4.61
2742 3671 2.683475 GGATCACCCAACCCCTGG 59.317 66.667 0.00 0.00 45.97 4.45
2756 3685 3.396685 CCCCTGGGTGGATTGAATTAA 57.603 47.619 12.71 0.00 38.35 1.40
2759 3688 3.701040 CCCTGGGTGGATTGAATTAACAG 59.299 47.826 3.97 0.00 38.35 3.16
2760 3689 3.701040 CCTGGGTGGATTGAATTAACAGG 59.299 47.826 0.00 0.00 38.35 4.00
2761 3690 4.344104 CTGGGTGGATTGAATTAACAGGT 58.656 43.478 0.00 0.00 0.00 4.00
2763 3692 4.086457 GGGTGGATTGAATTAACAGGTGT 58.914 43.478 0.00 0.00 0.00 4.16
2764 3693 4.526650 GGGTGGATTGAATTAACAGGTGTT 59.473 41.667 0.24 0.24 41.73 3.32
2766 3695 5.010617 GGTGGATTGAATTAACAGGTGTTGT 59.989 40.000 5.59 0.00 43.45 3.32
2859 3794 5.631119 AGCCTGTAAAGAATTAACAGGTGT 58.369 37.500 18.97 7.12 46.96 4.16
2860 3795 5.473504 AGCCTGTAAAGAATTAACAGGTGTG 59.526 40.000 18.97 0.00 46.96 3.82
2861 3796 5.335661 GCCTGTAAAGAATTAACAGGTGTGG 60.336 44.000 18.97 0.00 46.96 4.17
2862 3797 5.768164 CCTGTAAAGAATTAACAGGTGTGGT 59.232 40.000 11.69 0.00 42.06 4.16
2863 3798 6.264518 CCTGTAAAGAATTAACAGGTGTGGTT 59.735 38.462 11.69 0.00 42.06 3.67
2864 3799 7.201875 CCTGTAAAGAATTAACAGGTGTGGTTT 60.202 37.037 11.69 0.00 42.06 3.27
2865 3800 8.068892 TGTAAAGAATTAACAGGTGTGGTTTT 57.931 30.769 0.00 0.00 0.00 2.43
2866 3801 8.532819 TGTAAAGAATTAACAGGTGTGGTTTTT 58.467 29.630 0.00 0.00 0.00 1.94
2900 3835 9.131791 ACCAGATGAAACAAACTAAAATGTACT 57.868 29.630 0.00 0.00 0.00 2.73
2979 3914 8.163408 TCCTTGAAATCCTACAGAAAATTCAGA 58.837 33.333 0.00 0.00 31.41 3.27
2987 3922 6.820656 TCCTACAGAAAATTCAGAAGATCAGC 59.179 38.462 0.00 0.00 0.00 4.26
2996 3931 2.836372 TCAGAAGATCAGCATGTGGACT 59.164 45.455 0.00 0.00 37.40 3.85
3119 4055 5.106752 GCCTGTCAAAAGAAAGTCATCTCTC 60.107 44.000 0.00 0.00 0.00 3.20
3121 4057 5.842907 TGTCAAAAGAAAGTCATCTCTCGA 58.157 37.500 0.00 0.00 0.00 4.04
3134 4070 6.207810 AGTCATCTCTCGAGTTCAAAAGTACT 59.792 38.462 13.13 0.00 0.00 2.73
3135 4071 7.390996 AGTCATCTCTCGAGTTCAAAAGTACTA 59.609 37.037 13.13 0.00 0.00 1.82
3136 4072 7.694784 GTCATCTCTCGAGTTCAAAAGTACTAG 59.305 40.741 13.13 0.00 0.00 2.57
3137 4073 7.390996 TCATCTCTCGAGTTCAAAAGTACTAGT 59.609 37.037 13.13 0.00 0.00 2.57
3172 4108 9.777297 ACCAAAATATAAGACATTTTTGCAGTT 57.223 25.926 0.00 0.00 37.60 3.16
3227 4163 8.682936 TTAGTACGGAGGGAGTATAAGTTTAG 57.317 38.462 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.663556 AGTTTTGAAAATGGGGTGGTTTCTA 59.336 36.000 0.00 0.00 33.37 2.10
2 3 4.473196 AGTTTTGAAAATGGGGTGGTTTCT 59.527 37.500 0.00 0.00 33.37 2.52
4 5 4.384757 GGAGTTTTGAAAATGGGGTGGTTT 60.385 41.667 0.00 0.00 0.00 3.27
5 6 3.135712 GGAGTTTTGAAAATGGGGTGGTT 59.864 43.478 0.00 0.00 0.00 3.67
6 7 2.703536 GGAGTTTTGAAAATGGGGTGGT 59.296 45.455 0.00 0.00 0.00 4.16
7 8 2.972021 AGGAGTTTTGAAAATGGGGTGG 59.028 45.455 0.00 0.00 0.00 4.61
8 9 7.660030 ATATAGGAGTTTTGAAAATGGGGTG 57.340 36.000 0.00 0.00 0.00 4.61
9 10 8.539544 CAAATATAGGAGTTTTGAAAATGGGGT 58.460 33.333 0.00 0.00 33.24 4.95
10 11 8.757877 TCAAATATAGGAGTTTTGAAAATGGGG 58.242 33.333 0.00 0.00 36.66 4.96
18 19 9.023962 AGCAACATTCAAATATAGGAGTTTTGA 57.976 29.630 0.00 0.00 37.53 2.69
19 20 9.643693 AAGCAACATTCAAATATAGGAGTTTTG 57.356 29.630 0.00 0.00 0.00 2.44
21 22 9.860898 GAAAGCAACATTCAAATATAGGAGTTT 57.139 29.630 0.00 0.00 0.00 2.66
22 23 9.023962 TGAAAGCAACATTCAAATATAGGAGTT 57.976 29.630 0.00 0.00 34.04 3.01
23 24 8.579850 TGAAAGCAACATTCAAATATAGGAGT 57.420 30.769 0.00 0.00 34.04 3.85
24 25 9.459640 CATGAAAGCAACATTCAAATATAGGAG 57.540 33.333 0.00 0.00 39.98 3.69
25 26 8.415553 CCATGAAAGCAACATTCAAATATAGGA 58.584 33.333 0.00 0.00 39.98 2.94
26 27 7.654520 CCCATGAAAGCAACATTCAAATATAGG 59.345 37.037 0.00 0.00 39.98 2.57
27 28 8.199449 ACCCATGAAAGCAACATTCAAATATAG 58.801 33.333 0.00 0.00 39.98 1.31
28 29 7.980662 CACCCATGAAAGCAACATTCAAATATA 59.019 33.333 0.00 0.00 39.98 0.86
29 30 6.819649 CACCCATGAAAGCAACATTCAAATAT 59.180 34.615 0.00 0.00 39.98 1.28
30 31 6.014755 TCACCCATGAAAGCAACATTCAAATA 60.015 34.615 0.00 0.00 39.98 1.40
31 32 4.998672 CACCCATGAAAGCAACATTCAAAT 59.001 37.500 0.00 0.00 39.98 2.32
32 33 4.100653 TCACCCATGAAAGCAACATTCAAA 59.899 37.500 0.00 0.00 39.98 2.69
33 34 3.640498 TCACCCATGAAAGCAACATTCAA 59.360 39.130 0.00 0.00 39.98 2.69
34 35 3.229293 TCACCCATGAAAGCAACATTCA 58.771 40.909 0.00 0.00 40.76 2.57
35 36 3.940209 TCACCCATGAAAGCAACATTC 57.060 42.857 0.00 0.00 0.00 2.67
45 46 6.542821 AGTAATGTCTTCTTTCACCCATGAA 58.457 36.000 0.00 0.00 43.28 2.57
46 47 6.126863 AGTAATGTCTTCTTTCACCCATGA 57.873 37.500 0.00 0.00 0.00 3.07
47 48 5.939883 TGAGTAATGTCTTCTTTCACCCATG 59.060 40.000 0.00 0.00 0.00 3.66
48 49 6.126863 TGAGTAATGTCTTCTTTCACCCAT 57.873 37.500 0.00 0.00 0.00 4.00
49 50 5.560722 TGAGTAATGTCTTCTTTCACCCA 57.439 39.130 0.00 0.00 0.00 4.51
50 51 6.877611 TTTGAGTAATGTCTTCTTTCACCC 57.122 37.500 0.00 0.00 0.00 4.61
51 52 7.379797 GCTTTTTGAGTAATGTCTTCTTTCACC 59.620 37.037 0.00 0.00 0.00 4.02
52 53 7.112148 CGCTTTTTGAGTAATGTCTTCTTTCAC 59.888 37.037 0.00 0.00 0.00 3.18
53 54 7.132213 CGCTTTTTGAGTAATGTCTTCTTTCA 58.868 34.615 0.00 0.00 0.00 2.69
54 55 6.578919 CCGCTTTTTGAGTAATGTCTTCTTTC 59.421 38.462 0.00 0.00 0.00 2.62
55 56 6.438763 CCGCTTTTTGAGTAATGTCTTCTTT 58.561 36.000 0.00 0.00 0.00 2.52
56 57 5.562890 GCCGCTTTTTGAGTAATGTCTTCTT 60.563 40.000 0.00 0.00 0.00 2.52
57 58 4.083271 GCCGCTTTTTGAGTAATGTCTTCT 60.083 41.667 0.00 0.00 0.00 2.85
58 59 4.159120 GCCGCTTTTTGAGTAATGTCTTC 58.841 43.478 0.00 0.00 0.00 2.87
59 60 3.057526 GGCCGCTTTTTGAGTAATGTCTT 60.058 43.478 0.00 0.00 0.00 3.01
60 61 2.488153 GGCCGCTTTTTGAGTAATGTCT 59.512 45.455 0.00 0.00 0.00 3.41
61 62 2.727916 CGGCCGCTTTTTGAGTAATGTC 60.728 50.000 14.67 0.00 0.00 3.06
62 63 1.199097 CGGCCGCTTTTTGAGTAATGT 59.801 47.619 14.67 0.00 0.00 2.71
63 64 1.467374 CCGGCCGCTTTTTGAGTAATG 60.467 52.381 22.85 0.00 0.00 1.90
64 65 0.808755 CCGGCCGCTTTTTGAGTAAT 59.191 50.000 22.85 0.00 0.00 1.89
65 66 0.535553 ACCGGCCGCTTTTTGAGTAA 60.536 50.000 22.85 0.00 0.00 2.24
66 67 1.071814 ACCGGCCGCTTTTTGAGTA 59.928 52.632 22.85 0.00 0.00 2.59
67 68 2.203294 ACCGGCCGCTTTTTGAGT 60.203 55.556 22.85 6.61 0.00 3.41
68 69 2.255252 CACCGGCCGCTTTTTGAG 59.745 61.111 22.85 5.83 0.00 3.02
69 70 3.291383 CCACCGGCCGCTTTTTGA 61.291 61.111 22.85 0.00 0.00 2.69
83 84 0.749454 CAGATTGGGGTGCTAGCCAC 60.749 60.000 13.29 10.31 43.90 5.01
84 85 0.913934 TCAGATTGGGGTGCTAGCCA 60.914 55.000 13.29 0.00 37.54 4.75
85 86 0.255890 TTCAGATTGGGGTGCTAGCC 59.744 55.000 13.29 3.27 34.31 3.93
86 87 1.673168 CTTCAGATTGGGGTGCTAGC 58.327 55.000 8.10 8.10 0.00 3.42
87 88 1.673168 GCTTCAGATTGGGGTGCTAG 58.327 55.000 0.00 0.00 0.00 3.42
88 89 0.107703 CGCTTCAGATTGGGGTGCTA 60.108 55.000 0.00 0.00 0.00 3.49
89 90 1.377725 CGCTTCAGATTGGGGTGCT 60.378 57.895 0.00 0.00 0.00 4.40
90 91 1.675641 ACGCTTCAGATTGGGGTGC 60.676 57.895 0.00 0.00 0.00 5.01
91 92 0.606401 ACACGCTTCAGATTGGGGTG 60.606 55.000 0.00 0.00 45.24 4.61
92 93 0.321653 GACACGCTTCAGATTGGGGT 60.322 55.000 0.00 0.00 0.00 4.95
93 94 0.036010 AGACACGCTTCAGATTGGGG 60.036 55.000 0.00 0.00 0.00 4.96
94 95 1.466167 CAAGACACGCTTCAGATTGGG 59.534 52.381 0.00 0.00 33.60 4.12
95 96 2.146342 ACAAGACACGCTTCAGATTGG 58.854 47.619 0.00 0.00 33.60 3.16
96 97 3.885484 AACAAGACACGCTTCAGATTG 57.115 42.857 0.00 0.00 33.60 2.67
97 98 4.452455 CCTAAACAAGACACGCTTCAGATT 59.548 41.667 0.00 0.00 33.60 2.40
98 99 3.997021 CCTAAACAAGACACGCTTCAGAT 59.003 43.478 0.00 0.00 33.60 2.90
99 100 3.390135 CCTAAACAAGACACGCTTCAGA 58.610 45.455 0.00 0.00 33.60 3.27
100 101 2.480419 CCCTAAACAAGACACGCTTCAG 59.520 50.000 0.00 0.00 33.60 3.02
101 102 2.489971 CCCTAAACAAGACACGCTTCA 58.510 47.619 0.00 0.00 33.60 3.02
102 103 1.197036 GCCCTAAACAAGACACGCTTC 59.803 52.381 0.00 0.00 33.60 3.86
103 104 1.202770 AGCCCTAAACAAGACACGCTT 60.203 47.619 0.00 0.00 37.29 4.68
104 105 0.396811 AGCCCTAAACAAGACACGCT 59.603 50.000 0.00 0.00 0.00 5.07
105 106 2.088950 TAGCCCTAAACAAGACACGC 57.911 50.000 0.00 0.00 0.00 5.34
106 107 6.920569 ATAAATAGCCCTAAACAAGACACG 57.079 37.500 0.00 0.00 0.00 4.49
137 138 9.403583 ACAGTGGTTATCTACAAAGAAAAAGAA 57.596 29.630 0.00 0.00 34.73 2.52
138 139 8.974060 ACAGTGGTTATCTACAAAGAAAAAGA 57.026 30.769 0.00 0.00 34.73 2.52
140 141 8.767085 CGTACAGTGGTTATCTACAAAGAAAAA 58.233 33.333 0.00 0.00 34.73 1.94
141 142 7.927629 ACGTACAGTGGTTATCTACAAAGAAAA 59.072 33.333 0.00 0.00 34.73 2.29
142 143 7.436118 ACGTACAGTGGTTATCTACAAAGAAA 58.564 34.615 0.00 0.00 34.73 2.52
143 144 6.985117 ACGTACAGTGGTTATCTACAAAGAA 58.015 36.000 0.00 0.00 34.73 2.52
144 145 6.579666 ACGTACAGTGGTTATCTACAAAGA 57.420 37.500 0.00 0.00 35.80 2.52
145 146 8.922058 AATACGTACAGTGGTTATCTACAAAG 57.078 34.615 0.00 0.00 0.00 2.77
146 147 9.357652 GAAATACGTACAGTGGTTATCTACAAA 57.642 33.333 0.00 0.00 0.00 2.83
147 148 8.522003 TGAAATACGTACAGTGGTTATCTACAA 58.478 33.333 0.00 0.00 0.00 2.41
148 149 8.054152 TGAAATACGTACAGTGGTTATCTACA 57.946 34.615 0.00 0.00 0.00 2.74
149 150 8.915871 TTGAAATACGTACAGTGGTTATCTAC 57.084 34.615 0.00 0.00 0.00 2.59
151 152 9.444600 AAATTGAAATACGTACAGTGGTTATCT 57.555 29.630 0.00 0.00 0.00 1.98
154 155 9.881529 GAAAAATTGAAATACGTACAGTGGTTA 57.118 29.630 0.00 0.00 0.00 2.85
155 156 7.863877 GGAAAAATTGAAATACGTACAGTGGTT 59.136 33.333 0.00 0.00 0.00 3.67
156 157 7.229907 AGGAAAAATTGAAATACGTACAGTGGT 59.770 33.333 0.00 0.00 0.00 4.16
157 158 7.590279 AGGAAAAATTGAAATACGTACAGTGG 58.410 34.615 0.00 0.00 0.00 4.00
176 177 9.157104 GGCCGATTTCATAAAAATTAAGGAAAA 57.843 29.630 0.00 0.00 0.00 2.29
177 178 8.536175 AGGCCGATTTCATAAAAATTAAGGAAA 58.464 29.630 0.00 0.00 0.00 3.13
178 179 8.073467 AGGCCGATTTCATAAAAATTAAGGAA 57.927 30.769 0.00 0.00 0.00 3.36
179 180 7.559897 AGAGGCCGATTTCATAAAAATTAAGGA 59.440 33.333 0.00 0.00 0.00 3.36
180 181 7.716612 AGAGGCCGATTTCATAAAAATTAAGG 58.283 34.615 0.00 0.00 0.00 2.69
181 182 8.624776 AGAGAGGCCGATTTCATAAAAATTAAG 58.375 33.333 0.00 0.00 0.00 1.85
182 183 8.519799 AGAGAGGCCGATTTCATAAAAATTAA 57.480 30.769 0.00 0.00 0.00 1.40
183 184 8.519799 AAGAGAGGCCGATTTCATAAAAATTA 57.480 30.769 0.00 0.00 0.00 1.40
184 185 7.410120 AAGAGAGGCCGATTTCATAAAAATT 57.590 32.000 0.00 0.00 0.00 1.82
185 186 7.122650 TCAAAGAGAGGCCGATTTCATAAAAAT 59.877 33.333 0.00 0.00 0.00 1.82
186 187 6.432783 TCAAAGAGAGGCCGATTTCATAAAAA 59.567 34.615 0.00 0.00 0.00 1.94
187 188 5.943416 TCAAAGAGAGGCCGATTTCATAAAA 59.057 36.000 0.00 0.00 0.00 1.52
188 189 5.354234 GTCAAAGAGAGGCCGATTTCATAAA 59.646 40.000 0.00 0.00 0.00 1.40
189 190 4.876107 GTCAAAGAGAGGCCGATTTCATAA 59.124 41.667 0.00 0.00 0.00 1.90
190 191 4.162320 AGTCAAAGAGAGGCCGATTTCATA 59.838 41.667 0.00 0.00 0.00 2.15
191 192 3.054802 AGTCAAAGAGAGGCCGATTTCAT 60.055 43.478 0.00 0.00 0.00 2.57
192 193 2.303022 AGTCAAAGAGAGGCCGATTTCA 59.697 45.455 0.00 0.00 0.00 2.69
193 194 2.979240 AGTCAAAGAGAGGCCGATTTC 58.021 47.619 0.00 0.00 0.00 2.17
194 195 3.425162 AAGTCAAAGAGAGGCCGATTT 57.575 42.857 0.00 0.00 0.00 2.17
195 196 4.553330 TTAAGTCAAAGAGAGGCCGATT 57.447 40.909 0.00 0.00 0.00 3.34
196 197 4.223032 TCTTTAAGTCAAAGAGAGGCCGAT 59.777 41.667 0.00 0.00 46.16 4.18
197 198 3.576982 TCTTTAAGTCAAAGAGAGGCCGA 59.423 43.478 0.00 0.00 46.16 5.54
198 199 3.926616 TCTTTAAGTCAAAGAGAGGCCG 58.073 45.455 0.00 0.00 46.16 6.13
206 207 7.142021 GGCTTCCTTCTTTCTTTAAGTCAAAG 58.858 38.462 1.21 1.21 44.36 2.77
207 208 6.238648 CGGCTTCCTTCTTTCTTTAAGTCAAA 60.239 38.462 0.00 0.00 35.28 2.69
208 209 5.238650 CGGCTTCCTTCTTTCTTTAAGTCAA 59.761 40.000 0.00 0.00 35.28 3.18
209 210 4.755123 CGGCTTCCTTCTTTCTTTAAGTCA 59.245 41.667 0.00 0.00 35.28 3.41
210 211 4.154375 CCGGCTTCCTTCTTTCTTTAAGTC 59.846 45.833 0.00 0.00 35.28 3.01
211 212 4.072839 CCGGCTTCCTTCTTTCTTTAAGT 58.927 43.478 0.00 0.00 35.28 2.24
212 213 3.119814 GCCGGCTTCCTTCTTTCTTTAAG 60.120 47.826 22.15 0.00 35.04 1.85
213 214 2.817844 GCCGGCTTCCTTCTTTCTTTAA 59.182 45.455 22.15 0.00 0.00 1.52
214 215 2.433436 GCCGGCTTCCTTCTTTCTTTA 58.567 47.619 22.15 0.00 0.00 1.85
215 216 1.248486 GCCGGCTTCCTTCTTTCTTT 58.752 50.000 22.15 0.00 0.00 2.52
216 217 0.609406 GGCCGGCTTCCTTCTTTCTT 60.609 55.000 28.56 0.00 0.00 2.52
217 218 1.002011 GGCCGGCTTCCTTCTTTCT 60.002 57.895 28.56 0.00 0.00 2.52
218 219 0.609406 AAGGCCGGCTTCCTTCTTTC 60.609 55.000 28.56 4.97 39.63 2.62
219 220 1.460699 AAGGCCGGCTTCCTTCTTT 59.539 52.632 28.56 0.00 39.63 2.52
220 221 3.171348 AAGGCCGGCTTCCTTCTT 58.829 55.556 28.56 16.95 39.63 2.52
223 224 1.920835 AGAGAAGGCCGGCTTCCTT 60.921 57.895 28.56 21.22 45.98 3.36
224 225 2.284995 AGAGAAGGCCGGCTTCCT 60.285 61.111 28.56 13.39 34.90 3.36
225 226 2.124942 CAGAGAAGGCCGGCTTCC 60.125 66.667 28.56 18.86 0.00 3.46
226 227 1.153469 CTCAGAGAAGGCCGGCTTC 60.153 63.158 28.56 25.21 0.00 3.86
227 228 2.985456 CTCAGAGAAGGCCGGCTT 59.015 61.111 28.56 18.19 0.00 4.35
228 229 3.780173 GCTCAGAGAAGGCCGGCT 61.780 66.667 28.56 7.30 0.00 5.52
229 230 4.847444 GGCTCAGAGAAGGCCGGC 62.847 72.222 21.18 21.18 36.37 6.13
232 233 0.106521 GATCAGGCTCAGAGAAGGCC 59.893 60.000 0.00 0.00 45.57 5.19
233 234 1.069049 GAGATCAGGCTCAGAGAAGGC 59.931 57.143 0.00 0.00 41.92 4.35
234 235 1.337703 CGAGATCAGGCTCAGAGAAGG 59.662 57.143 0.00 0.00 34.56 3.46
235 236 2.023673 ACGAGATCAGGCTCAGAGAAG 58.976 52.381 0.00 0.00 34.56 2.85
236 237 2.020720 GACGAGATCAGGCTCAGAGAA 58.979 52.381 0.00 0.00 34.56 2.87
237 238 1.674359 GACGAGATCAGGCTCAGAGA 58.326 55.000 0.00 0.00 34.56 3.10
238 239 0.667993 GGACGAGATCAGGCTCAGAG 59.332 60.000 0.00 0.00 34.56 3.35
239 240 1.098129 CGGACGAGATCAGGCTCAGA 61.098 60.000 0.00 0.00 34.56 3.27
240 241 1.098129 TCGGACGAGATCAGGCTCAG 61.098 60.000 0.00 0.00 34.56 3.35
241 242 1.077716 TCGGACGAGATCAGGCTCA 60.078 57.895 0.00 0.00 34.56 4.26
242 243 1.357334 GTCGGACGAGATCAGGCTC 59.643 63.158 0.00 0.00 0.00 4.70
243 244 2.122167 GGTCGGACGAGATCAGGCT 61.122 63.158 1.43 0.00 0.00 4.58
244 245 2.413765 GGTCGGACGAGATCAGGC 59.586 66.667 1.43 0.00 0.00 4.85
245 246 1.454111 AGGGTCGGACGAGATCAGG 60.454 63.158 1.43 0.00 0.00 3.86
246 247 1.032657 ACAGGGTCGGACGAGATCAG 61.033 60.000 1.43 0.00 0.00 2.90
247 248 0.253894 TACAGGGTCGGACGAGATCA 59.746 55.000 1.43 0.00 0.00 2.92
248 249 1.386533 TTACAGGGTCGGACGAGATC 58.613 55.000 1.43 0.00 0.00 2.75
249 250 1.475682 GTTTACAGGGTCGGACGAGAT 59.524 52.381 1.43 0.00 0.00 2.75
250 251 0.883833 GTTTACAGGGTCGGACGAGA 59.116 55.000 1.43 0.00 0.00 4.04
251 252 0.455633 CGTTTACAGGGTCGGACGAG 60.456 60.000 1.43 0.00 32.73 4.18
252 253 0.888736 TCGTTTACAGGGTCGGACGA 60.889 55.000 1.43 0.00 37.21 4.20
253 254 0.039256 TTCGTTTACAGGGTCGGACG 60.039 55.000 1.43 0.00 0.00 4.79
254 255 1.270550 TCTTCGTTTACAGGGTCGGAC 59.729 52.381 0.00 0.00 0.00 4.79
255 256 1.270550 GTCTTCGTTTACAGGGTCGGA 59.729 52.381 0.00 0.00 0.00 4.55
256 257 1.000060 TGTCTTCGTTTACAGGGTCGG 60.000 52.381 0.00 0.00 0.00 4.79
257 258 2.427232 TGTCTTCGTTTACAGGGTCG 57.573 50.000 0.00 0.00 0.00 4.79
258 259 5.476614 AGTAATGTCTTCGTTTACAGGGTC 58.523 41.667 0.00 0.00 0.00 4.46
259 260 5.011329 TGAGTAATGTCTTCGTTTACAGGGT 59.989 40.000 0.00 0.00 0.00 4.34
260 261 5.475719 TGAGTAATGTCTTCGTTTACAGGG 58.524 41.667 0.00 0.00 0.00 4.45
261 262 6.866770 TCTTGAGTAATGTCTTCGTTTACAGG 59.133 38.462 0.00 0.00 0.00 4.00
262 263 7.869016 TCTTGAGTAATGTCTTCGTTTACAG 57.131 36.000 0.00 0.00 0.00 2.74
263 264 7.095774 GCTTCTTGAGTAATGTCTTCGTTTACA 60.096 37.037 0.00 0.00 0.00 2.41
264 265 7.095774 TGCTTCTTGAGTAATGTCTTCGTTTAC 60.096 37.037 0.00 0.00 0.00 2.01
265 266 6.926826 TGCTTCTTGAGTAATGTCTTCGTTTA 59.073 34.615 0.00 0.00 0.00 2.01
266 267 5.758296 TGCTTCTTGAGTAATGTCTTCGTTT 59.242 36.000 0.00 0.00 0.00 3.60
267 268 5.297547 TGCTTCTTGAGTAATGTCTTCGTT 58.702 37.500 0.00 0.00 0.00 3.85
268 269 4.883083 TGCTTCTTGAGTAATGTCTTCGT 58.117 39.130 0.00 0.00 0.00 3.85
269 270 4.926238 ACTGCTTCTTGAGTAATGTCTTCG 59.074 41.667 0.00 0.00 0.00 3.79
270 271 6.348050 CCAACTGCTTCTTGAGTAATGTCTTC 60.348 42.308 0.00 0.00 0.00 2.87
271 272 5.471456 CCAACTGCTTCTTGAGTAATGTCTT 59.529 40.000 0.00 0.00 0.00 3.01
272 273 4.999950 CCAACTGCTTCTTGAGTAATGTCT 59.000 41.667 0.00 0.00 0.00 3.41
273 274 4.378874 GCCAACTGCTTCTTGAGTAATGTC 60.379 45.833 0.00 0.00 36.87 3.06
274 275 3.503748 GCCAACTGCTTCTTGAGTAATGT 59.496 43.478 0.00 0.00 36.87 2.71
275 276 3.425359 CGCCAACTGCTTCTTGAGTAATG 60.425 47.826 0.00 0.00 38.05 1.90
276 277 2.744202 CGCCAACTGCTTCTTGAGTAAT 59.256 45.455 0.00 0.00 38.05 1.89
277 278 2.143122 CGCCAACTGCTTCTTGAGTAA 58.857 47.619 0.00 0.00 38.05 2.24
278 279 1.608025 CCGCCAACTGCTTCTTGAGTA 60.608 52.381 0.00 0.00 38.05 2.59
279 280 0.886490 CCGCCAACTGCTTCTTGAGT 60.886 55.000 0.00 0.00 38.05 3.41
280 281 1.871772 CCGCCAACTGCTTCTTGAG 59.128 57.895 0.00 0.00 38.05 3.02
281 282 2.260869 GCCGCCAACTGCTTCTTGA 61.261 57.895 0.00 0.00 38.05 3.02
282 283 1.799258 AAGCCGCCAACTGCTTCTTG 61.799 55.000 0.00 0.00 41.92 3.02
283 284 1.529244 AAGCCGCCAACTGCTTCTT 60.529 52.632 0.00 0.00 41.92 2.52
284 285 2.113986 AAGCCGCCAACTGCTTCT 59.886 55.556 0.00 0.00 41.92 2.85
285 286 2.256461 CAAGCCGCCAACTGCTTC 59.744 61.111 0.00 0.00 43.55 3.86
286 287 3.297620 CCAAGCCGCCAACTGCTT 61.298 61.111 0.00 0.00 45.94 3.91
296 297 2.281070 ATGATAGCCGCCAAGCCG 60.281 61.111 0.00 0.00 0.00 5.52
297 298 1.227943 TGATGATAGCCGCCAAGCC 60.228 57.895 0.00 0.00 0.00 4.35
298 299 1.510480 GGTGATGATAGCCGCCAAGC 61.510 60.000 0.00 0.00 33.37 4.01
299 300 0.179048 TGGTGATGATAGCCGCCAAG 60.179 55.000 0.00 0.00 39.71 3.61
300 301 0.463654 GTGGTGATGATAGCCGCCAA 60.464 55.000 0.00 0.00 43.63 4.52
301 302 1.146041 GTGGTGATGATAGCCGCCA 59.854 57.895 0.00 0.00 40.30 5.69
302 303 0.463654 TTGTGGTGATGATAGCCGCC 60.464 55.000 0.00 0.00 32.23 6.13
303 304 1.265095 CATTGTGGTGATGATAGCCGC 59.735 52.381 0.00 0.00 0.00 6.53
304 305 2.564771 ACATTGTGGTGATGATAGCCG 58.435 47.619 0.00 0.00 0.00 5.52
305 306 5.590259 AGTTTACATTGTGGTGATGATAGCC 59.410 40.000 0.00 0.00 0.00 3.93
306 307 6.094048 ACAGTTTACATTGTGGTGATGATAGC 59.906 38.462 0.00 0.00 0.00 2.97
307 308 7.466805 CACAGTTTACATTGTGGTGATGATAG 58.533 38.462 0.00 0.00 40.69 2.08
308 309 6.128035 GCACAGTTTACATTGTGGTGATGATA 60.128 38.462 6.64 0.00 43.71 2.15
309 310 5.335897 GCACAGTTTACATTGTGGTGATGAT 60.336 40.000 6.64 0.00 43.71 2.45
310 311 4.023279 GCACAGTTTACATTGTGGTGATGA 60.023 41.667 6.64 0.00 43.71 2.92
311 312 4.229096 GCACAGTTTACATTGTGGTGATG 58.771 43.478 6.64 0.00 43.71 3.07
312 313 4.503741 GCACAGTTTACATTGTGGTGAT 57.496 40.909 6.64 0.00 43.71 3.06
313 314 3.980646 GCACAGTTTACATTGTGGTGA 57.019 42.857 6.64 0.00 43.71 4.02
316 317 4.305989 ACAAGCACAGTTTACATTGTGG 57.694 40.909 6.64 0.00 43.71 4.17
317 318 6.417635 CCTAAACAAGCACAGTTTACATTGTG 59.582 38.462 0.00 0.44 45.70 3.33
318 319 6.460953 CCCTAAACAAGCACAGTTTACATTGT 60.461 38.462 0.00 0.00 39.65 2.71
319 320 5.920273 CCCTAAACAAGCACAGTTTACATTG 59.080 40.000 4.83 0.00 39.65 2.82
320 321 5.596772 ACCCTAAACAAGCACAGTTTACATT 59.403 36.000 4.83 0.00 39.65 2.71
321 322 5.137551 ACCCTAAACAAGCACAGTTTACAT 58.862 37.500 4.83 0.00 39.65 2.29
322 323 4.528920 ACCCTAAACAAGCACAGTTTACA 58.471 39.130 4.83 0.00 39.65 2.41
323 324 5.509716 AACCCTAAACAAGCACAGTTTAC 57.490 39.130 4.83 0.00 39.65 2.01
324 325 7.826918 AATAACCCTAAACAAGCACAGTTTA 57.173 32.000 7.75 7.75 39.65 2.01
325 326 6.724893 AATAACCCTAAACAAGCACAGTTT 57.275 33.333 6.46 6.46 41.63 2.66
326 327 6.097696 ACAAATAACCCTAAACAAGCACAGTT 59.902 34.615 0.00 0.00 0.00 3.16
327 328 5.596772 ACAAATAACCCTAAACAAGCACAGT 59.403 36.000 0.00 0.00 0.00 3.55
328 329 6.084326 ACAAATAACCCTAAACAAGCACAG 57.916 37.500 0.00 0.00 0.00 3.66
329 330 6.472686 AACAAATAACCCTAAACAAGCACA 57.527 33.333 0.00 0.00 0.00 4.57
330 331 6.422701 GGAAACAAATAACCCTAAACAAGCAC 59.577 38.462 0.00 0.00 0.00 4.40
331 332 6.325286 AGGAAACAAATAACCCTAAACAAGCA 59.675 34.615 0.00 0.00 0.00 3.91
332 333 6.755206 AGGAAACAAATAACCCTAAACAAGC 58.245 36.000 0.00 0.00 0.00 4.01
333 334 9.607988 AAAAGGAAACAAATAACCCTAAACAAG 57.392 29.630 0.00 0.00 0.00 3.16
334 335 9.602568 GAAAAGGAAACAAATAACCCTAAACAA 57.397 29.630 0.00 0.00 0.00 2.83
335 336 8.983789 AGAAAAGGAAACAAATAACCCTAAACA 58.016 29.630 0.00 0.00 0.00 2.83
336 337 9.472361 GAGAAAAGGAAACAAATAACCCTAAAC 57.528 33.333 0.00 0.00 0.00 2.01
337 338 9.203163 TGAGAAAAGGAAACAAATAACCCTAAA 57.797 29.630 0.00 0.00 0.00 1.85
338 339 8.770010 TGAGAAAAGGAAACAAATAACCCTAA 57.230 30.769 0.00 0.00 0.00 2.69
339 340 8.770010 TTGAGAAAAGGAAACAAATAACCCTA 57.230 30.769 0.00 0.00 0.00 3.53
340 341 7.669089 TTGAGAAAAGGAAACAAATAACCCT 57.331 32.000 0.00 0.00 0.00 4.34
341 342 8.725405 TTTTGAGAAAAGGAAACAAATAACCC 57.275 30.769 0.00 0.00 32.05 4.11
369 370 3.245264 ACTGGCTGGTGGCTACTATTTTT 60.245 43.478 0.00 0.00 41.46 1.94
370 371 2.308866 ACTGGCTGGTGGCTACTATTTT 59.691 45.455 0.00 0.00 41.46 1.82
371 372 1.916181 ACTGGCTGGTGGCTACTATTT 59.084 47.619 0.00 0.00 41.46 1.40
372 373 1.584724 ACTGGCTGGTGGCTACTATT 58.415 50.000 0.00 0.00 41.46 1.73
373 374 1.210478 CAACTGGCTGGTGGCTACTAT 59.790 52.381 0.82 0.00 41.46 2.12
374 375 0.613260 CAACTGGCTGGTGGCTACTA 59.387 55.000 0.82 0.00 41.46 1.82
375 376 1.127567 TCAACTGGCTGGTGGCTACT 61.128 55.000 9.67 0.00 41.46 2.57
376 377 0.674895 CTCAACTGGCTGGTGGCTAC 60.675 60.000 9.67 0.00 41.46 3.58
377 378 1.679311 CTCAACTGGCTGGTGGCTA 59.321 57.895 9.67 0.00 41.46 3.93
378 379 2.433446 CTCAACTGGCTGGTGGCT 59.567 61.111 9.67 0.00 41.46 4.75
379 380 2.674380 CCTCAACTGGCTGGTGGC 60.674 66.667 9.67 0.00 40.90 5.01
387 388 1.225704 GGGGATCAGCCTCAACTGG 59.774 63.158 0.00 0.00 36.99 4.00
388 389 1.153289 CGGGGATCAGCCTCAACTG 60.153 63.158 0.00 0.00 36.72 3.16
389 390 2.370445 CCGGGGATCAGCCTCAACT 61.370 63.158 0.00 0.00 36.72 3.16
390 391 2.190578 CCGGGGATCAGCCTCAAC 59.809 66.667 0.00 0.00 36.72 3.18
391 392 3.797353 GCCGGGGATCAGCCTCAA 61.797 66.667 2.18 0.00 36.72 3.02
407 408 4.736896 GTGTCGGACAGGGTCGGC 62.737 72.222 11.83 0.00 33.78 5.54
408 409 4.415332 CGTGTCGGACAGGGTCGG 62.415 72.222 20.13 0.00 34.82 4.79
454 455 0.394762 TCTGCTCACATGGCCATTCC 60.395 55.000 17.92 3.19 0.00 3.01
521 522 3.059982 CTCGTTCTGTGGGCAGGA 58.940 61.111 0.00 0.00 42.78 3.86
525 526 3.426568 GCAGCTCGTTCTGTGGGC 61.427 66.667 8.09 0.00 36.49 5.36
530 531 1.416813 GACCGATGCAGCTCGTTCTG 61.417 60.000 8.75 3.01 36.93 3.02
532 533 2.508891 CGACCGATGCAGCTCGTTC 61.509 63.158 8.75 3.34 36.93 3.95
533 534 2.507102 CGACCGATGCAGCTCGTT 60.507 61.111 8.75 0.00 36.93 3.85
585 586 3.349006 GCTGTCAGTGGTGTGGCG 61.349 66.667 0.93 0.00 0.00 5.69
586 587 2.980233 GGCTGTCAGTGGTGTGGC 60.980 66.667 0.93 0.00 0.00 5.01
587 588 1.302033 GAGGCTGTCAGTGGTGTGG 60.302 63.158 0.93 0.00 0.00 4.17
588 589 1.302033 GGAGGCTGTCAGTGGTGTG 60.302 63.158 0.93 0.00 0.00 3.82
589 590 1.460305 AGGAGGCTGTCAGTGGTGT 60.460 57.895 0.93 0.00 0.00 4.16
720 778 2.049156 CTTGAGCGGCGTCTGTGA 60.049 61.111 9.37 0.00 0.00 3.58
721 779 2.356313 ACTTGAGCGGCGTCTGTG 60.356 61.111 9.37 0.00 0.00 3.66
722 780 2.049063 GACTTGAGCGGCGTCTGT 60.049 61.111 9.37 8.28 0.00 3.41
723 781 2.811317 GGACTTGAGCGGCGTCTG 60.811 66.667 9.37 5.36 0.00 3.51
724 782 3.303135 TGGACTTGAGCGGCGTCT 61.303 61.111 9.37 6.10 0.00 4.18
725 783 3.112709 GTGGACTTGAGCGGCGTC 61.113 66.667 9.37 5.62 0.00 5.19
729 787 2.738521 CCACGTGGACTTGAGCGG 60.739 66.667 31.31 0.00 37.39 5.52
731 789 2.022129 CGACCACGTGGACTTGAGC 61.022 63.158 40.21 17.44 38.94 4.26
858 964 3.056328 GCTTCCGGTCAGTTGGGC 61.056 66.667 0.00 0.00 0.00 5.36
859 965 2.359975 GGCTTCCGGTCAGTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
860 966 1.376037 GAGGCTTCCGGTCAGTTGG 60.376 63.158 0.00 0.00 0.00 3.77
861 967 0.250295 TTGAGGCTTCCGGTCAGTTG 60.250 55.000 0.00 0.00 0.00 3.16
870 982 2.434359 CCGACCGTTGAGGCTTCC 60.434 66.667 0.00 0.00 46.52 3.46
947 1068 3.458163 CTTCTCGGCTACGGGGCA 61.458 66.667 4.42 0.00 42.10 5.36
954 1075 2.290464 GTACAGCTCTCTTCTCGGCTA 58.710 52.381 0.00 0.00 33.43 3.93
958 1079 3.228085 GCGTACAGCTCTCTTCTCG 57.772 57.895 0.00 0.00 44.04 4.04
1016 1142 1.502231 GCAGACGAGCAAGAACAGAA 58.498 50.000 0.00 0.00 0.00 3.02
1017 1143 0.664466 CGCAGACGAGCAAGAACAGA 60.664 55.000 0.00 0.00 43.93 3.41
1079 1205 7.042335 CCGTAAGAAGATCAAGGAGTAACAAT 58.958 38.462 0.00 0.00 43.02 2.71
1080 1206 6.209986 TCCGTAAGAAGATCAAGGAGTAACAA 59.790 38.462 0.00 0.00 43.02 2.83
1103 1345 4.216687 ACAATGTAGTAGCTAGCGAGATCC 59.783 45.833 9.55 0.00 0.00 3.36
1104 1346 5.365403 ACAATGTAGTAGCTAGCGAGATC 57.635 43.478 9.55 2.35 0.00 2.75
1106 1348 3.247886 CGACAATGTAGTAGCTAGCGAGA 59.752 47.826 9.55 0.00 0.00 4.04
1108 1350 2.941064 ACGACAATGTAGTAGCTAGCGA 59.059 45.455 9.55 0.00 0.00 4.93
1110 1352 4.555348 AGACGACAATGTAGTAGCTAGC 57.445 45.455 6.62 6.62 0.00 3.42
1112 1354 6.037940 CAGGTTAGACGACAATGTAGTAGCTA 59.962 42.308 0.00 0.00 0.00 3.32
1113 1355 4.948621 AGGTTAGACGACAATGTAGTAGCT 59.051 41.667 0.00 0.00 0.00 3.32
1114 1356 5.035443 CAGGTTAGACGACAATGTAGTAGC 58.965 45.833 0.00 0.00 0.00 3.58
1130 1447 3.179830 GACAGCACGTATGTCAGGTTAG 58.820 50.000 21.83 0.00 45.18 2.34
1141 1498 0.320683 AGCTTGCATGACAGCACGTA 60.321 50.000 16.45 0.00 45.61 3.57
1142 1499 1.598962 AGCTTGCATGACAGCACGT 60.599 52.632 16.45 0.00 45.61 4.49
1733 2479 4.218852 ACAGGTGCAGAGTAGAGTAAGAAC 59.781 45.833 0.00 0.00 0.00 3.01
1758 2504 2.629051 TGATCAGCATGTTCTCTGCAG 58.371 47.619 7.63 7.63 42.15 4.41
2173 2952 4.760047 CGGGTGCTGTTCCCCTCG 62.760 72.222 0.00 0.00 41.78 4.63
2324 3103 2.416547 CAGCAGTCATTTTCCACTACGG 59.583 50.000 0.00 0.00 0.00 4.02
2327 3106 4.890158 TCTCAGCAGTCATTTTCCACTA 57.110 40.909 0.00 0.00 0.00 2.74
2330 3109 4.654915 TCATTCTCAGCAGTCATTTTCCA 58.345 39.130 0.00 0.00 0.00 3.53
2331 3110 5.831702 ATCATTCTCAGCAGTCATTTTCC 57.168 39.130 0.00 0.00 0.00 3.13
2336 3211 6.975196 ACTACTATCATTCTCAGCAGTCAT 57.025 37.500 0.00 0.00 0.00 3.06
2373 3253 5.613142 GCATCAACAAAGCACAATGTTAAGC 60.613 40.000 0.00 0.00 37.66 3.09
2384 3264 2.030893 CGAAGGAAGCATCAACAAAGCA 60.031 45.455 0.00 0.00 0.00 3.91
2385 3265 2.226437 TCGAAGGAAGCATCAACAAAGC 59.774 45.455 0.00 0.00 0.00 3.51
2386 3266 4.222114 GTTCGAAGGAAGCATCAACAAAG 58.778 43.478 0.00 0.00 31.49 2.77
2387 3267 3.629855 TGTTCGAAGGAAGCATCAACAAA 59.370 39.130 0.00 0.00 31.49 2.83
2388 3268 3.210227 TGTTCGAAGGAAGCATCAACAA 58.790 40.909 0.00 0.00 31.49 2.83
2389 3269 2.844946 TGTTCGAAGGAAGCATCAACA 58.155 42.857 0.00 0.00 31.49 3.33
2390 3270 3.896648 TTGTTCGAAGGAAGCATCAAC 57.103 42.857 0.00 0.00 31.49 3.18
2391 3271 4.518590 TGATTTGTTCGAAGGAAGCATCAA 59.481 37.500 0.00 0.00 31.49 2.57
2392 3272 4.071423 TGATTTGTTCGAAGGAAGCATCA 58.929 39.130 0.00 0.00 31.49 3.07
2393 3273 4.685169 TGATTTGTTCGAAGGAAGCATC 57.315 40.909 0.00 0.00 31.49 3.91
2394 3274 5.452078 TTTGATTTGTTCGAAGGAAGCAT 57.548 34.783 10.89 0.00 31.49 3.79
2395 3275 4.909696 TTTGATTTGTTCGAAGGAAGCA 57.090 36.364 0.00 2.48 31.49 3.91
2396 3276 5.920273 TCAATTTGATTTGTTCGAAGGAAGC 59.080 36.000 0.00 0.00 31.11 3.86
2397 3277 7.809331 TGATCAATTTGATTTGTTCGAAGGAAG 59.191 33.333 12.96 0.00 37.20 3.46
2398 3278 7.656412 TGATCAATTTGATTTGTTCGAAGGAA 58.344 30.769 12.96 0.00 37.20 3.36
2399 3279 7.213216 TGATCAATTTGATTTGTTCGAAGGA 57.787 32.000 12.96 0.00 37.20 3.36
2400 3280 9.571810 TTATGATCAATTTGATTTGTTCGAAGG 57.428 29.630 12.96 0.00 37.20 3.46
2409 3289 9.878667 TGCAGTGAATTATGATCAATTTGATTT 57.121 25.926 12.96 3.50 37.20 2.17
2410 3290 9.878667 TTGCAGTGAATTATGATCAATTTGATT 57.121 25.926 12.96 1.52 37.20 2.57
2411 3291 9.309516 GTTGCAGTGAATTATGATCAATTTGAT 57.690 29.630 11.64 11.64 40.34 2.57
2412 3292 8.305317 TGTTGCAGTGAATTATGATCAATTTGA 58.695 29.630 0.00 0.75 0.00 2.69
2415 3295 7.833786 ACTGTTGCAGTGAATTATGATCAATT 58.166 30.769 0.00 0.00 43.63 2.32
2425 3305 5.618056 CAGTGATACTGTTGCAGTGAATT 57.382 39.130 11.57 0.00 45.01 2.17
2446 3327 4.827692 ACGTAACATTCCAGCTGATTACA 58.172 39.130 17.39 0.00 0.00 2.41
2461 3342 4.761975 AGGAGAAGTGTGAAAACGTAACA 58.238 39.130 0.00 0.00 0.00 2.41
2462 3343 5.729974 AAGGAGAAGTGTGAAAACGTAAC 57.270 39.130 0.00 0.00 0.00 2.50
2463 3344 6.372103 TGAAAAGGAGAAGTGTGAAAACGTAA 59.628 34.615 0.00 0.00 0.00 3.18
2465 3346 4.698304 TGAAAAGGAGAAGTGTGAAAACGT 59.302 37.500 0.00 0.00 0.00 3.99
2466 3347 5.229921 TGAAAAGGAGAAGTGTGAAAACG 57.770 39.130 0.00 0.00 0.00 3.60
2473 3377 4.137543 AGCGATTTGAAAAGGAGAAGTGT 58.862 39.130 0.00 0.00 0.00 3.55
2479 3384 4.453819 ACAGAGAAGCGATTTGAAAAGGAG 59.546 41.667 0.00 0.00 0.00 3.69
2493 3398 4.633126 TCAGCATTTCATACACAGAGAAGC 59.367 41.667 0.00 0.00 0.00 3.86
2502 3408 5.009911 GGGCACATATTCAGCATTTCATACA 59.990 40.000 0.00 0.00 0.00 2.29
2517 3423 2.843730 TGTACTGAACAGGGGCACATAT 59.156 45.455 6.76 0.00 33.01 1.78
2562 3468 0.388006 GTTACAACAACGGCATGCCC 60.388 55.000 30.79 13.37 0.00 5.36
2569 3475 4.561735 ACATTTGGAGTTACAACAACGG 57.438 40.909 0.00 0.00 0.00 4.44
2613 3533 4.927425 AGATTTGAATTGTGCATTGCTGTC 59.073 37.500 10.49 1.58 0.00 3.51
2712 3641 2.042930 GATCCCCACCCCTCACCT 59.957 66.667 0.00 0.00 0.00 4.00
2742 3671 5.010617 ACAACACCTGTTAATTCAATCCACC 59.989 40.000 0.00 0.00 32.99 4.61
2756 3685 3.881089 GCTACCTGTTAAACAACACCTGT 59.119 43.478 0.00 0.00 41.27 4.00
2759 3688 3.252458 CCTGCTACCTGTTAAACAACACC 59.748 47.826 0.00 0.00 0.00 4.16
2760 3689 4.131596 TCCTGCTACCTGTTAAACAACAC 58.868 43.478 0.00 0.00 0.00 3.32
2761 3690 4.425180 TCCTGCTACCTGTTAAACAACA 57.575 40.909 0.00 0.00 0.00 3.33
2763 3692 6.015772 GGAATTTCCTGCTACCTGTTAAACAA 60.016 38.462 8.25 0.00 32.53 2.83
2764 3693 5.475564 GGAATTTCCTGCTACCTGTTAAACA 59.524 40.000 8.25 0.00 32.53 2.83
2766 3695 5.475564 GTGGAATTTCCTGCTACCTGTTAAA 59.524 40.000 16.25 0.00 37.46 1.52
2767 3696 5.007682 GTGGAATTTCCTGCTACCTGTTAA 58.992 41.667 16.25 0.00 37.46 2.01
2771 3700 3.356529 AGTGGAATTTCCTGCTACCTG 57.643 47.619 16.25 0.00 37.46 4.00
2772 3701 4.103311 GGATAGTGGAATTTCCTGCTACCT 59.897 45.833 16.25 5.53 37.46 3.08
2773 3702 4.141482 TGGATAGTGGAATTTCCTGCTACC 60.141 45.833 16.25 17.68 37.46 3.18
2774 3703 5.036117 TGGATAGTGGAATTTCCTGCTAC 57.964 43.478 16.25 6.30 37.46 3.58
2906 3841 8.306313 TCTCAGTAATGTGAGGTATGTAATGT 57.694 34.615 1.20 0.00 43.69 2.71
2979 3914 3.430042 AACAGTCCACATGCTGATCTT 57.570 42.857 5.23 0.00 36.62 2.40
2987 3922 4.631131 TGTTCAGTCTAACAGTCCACATG 58.369 43.478 0.00 0.00 34.50 3.21
3119 4055 7.022384 CAGAGGTACTAGTACTTTTGAACTCG 58.978 42.308 27.71 16.40 41.55 4.18
3121 4057 7.836479 ACAGAGGTACTAGTACTTTTGAACT 57.164 36.000 30.42 19.11 41.55 3.01
3191 4127 8.003629 ACTCCCTCCGTACTAAAATATAAGACT 58.996 37.037 0.00 0.00 0.00 3.24
3204 4140 6.667661 ACTAAACTTATACTCCCTCCGTACT 58.332 40.000 0.00 0.00 0.00 2.73
3239 4175 4.906060 ACTACAGGTAGGTCTTCCAAGTTT 59.094 41.667 10.91 0.00 37.49 2.66
3256 4192 4.527509 AGACAGTGTCATTGGACTACAG 57.472 45.455 24.73 0.00 44.61 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.