Multiple sequence alignment - TraesCS2A01G350800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G350800 chr2A 100.000 2906 0 0 1 2906 590967258 590964353 0.000000e+00 5367.0
1 TraesCS2A01G350800 chr2A 79.791 1341 179 48 639 1912 590818184 590816869 0.000000e+00 891.0
2 TraesCS2A01G350800 chr2A 88.859 754 45 13 348 1070 590975545 590974800 0.000000e+00 891.0
3 TraesCS2A01G350800 chr2A 83.036 1008 105 37 1197 2160 590974796 590973811 0.000000e+00 854.0
4 TraesCS2A01G350800 chr2A 96.386 166 6 0 2741 2906 128138406 128138241 1.030000e-69 274.0
5 TraesCS2A01G350800 chr2D 93.243 1983 76 21 778 2739 446697403 446695458 0.000000e+00 2867.0
6 TraesCS2A01G350800 chr2D 93.279 1979 76 20 778 2736 446728071 446726130 0.000000e+00 2865.0
7 TraesCS2A01G350800 chr2D 80.225 1335 178 45 639 1915 446653579 446652273 0.000000e+00 924.0
8 TraesCS2A01G350800 chr2D 84.254 978 98 28 1195 2138 446932198 446933153 0.000000e+00 902.0
9 TraesCS2A01G350800 chr2D 87.533 762 69 17 1 759 446732130 446731392 0.000000e+00 857.0
10 TraesCS2A01G350800 chr2D 87.533 762 68 18 1 759 446699345 446698608 0.000000e+00 856.0
11 TraesCS2A01G350800 chr2D 87.089 426 39 9 348 759 446929726 446930149 4.380000e-128 468.0
12 TraesCS2A01G350800 chr2D 88.449 303 26 3 775 1070 446931896 446932196 9.900000e-95 357.0
13 TraesCS2A01G350800 chr2B 92.297 1493 69 16 689 2140 526734711 526733224 0.000000e+00 2078.0
14 TraesCS2A01G350800 chr2B 81.223 1161 159 31 797 1915 526671159 526670016 0.000000e+00 881.0
15 TraesCS2A01G350800 chr2B 86.000 600 54 16 1 585 526735299 526734715 1.480000e-172 616.0
16 TraesCS2A01G350800 chr2B 82.927 82 14 0 18 99 669050108 669050189 1.120000e-09 75.0
17 TraesCS2A01G350800 chr7B 96.386 166 5 1 2741 2906 373059945 373059781 3.690000e-69 272.0
18 TraesCS2A01G350800 chr7B 80.769 104 17 3 1 103 733716018 733715917 8.630000e-11 78.7
19 TraesCS2A01G350800 chr7A 95.808 167 7 0 2740 2906 187095542 187095376 1.330000e-68 270.0
20 TraesCS2A01G350800 chr5D 95.783 166 7 0 2741 2906 272570563 272570398 4.770000e-68 268.0
21 TraesCS2A01G350800 chr5D 95.181 166 8 0 2741 2906 88945239 88945074 2.220000e-66 263.0
22 TraesCS2A01G350800 chr6D 78.673 422 74 14 1495 1905 277266802 277266386 1.720000e-67 267.0
23 TraesCS2A01G350800 chr6D 95.181 166 8 0 2741 2906 432051704 432051539 2.220000e-66 263.0
24 TraesCS2A01G350800 chr6D 95.181 166 8 0 2741 2906 432361922 432361757 2.220000e-66 263.0
25 TraesCS2A01G350800 chr6D 81.319 91 17 0 9 99 283817808 283817718 1.120000e-09 75.0
26 TraesCS2A01G350800 chr6D 82.927 82 14 0 18 99 367875065 367875146 1.120000e-09 75.0
27 TraesCS2A01G350800 chr6A 78.673 422 74 14 1495 1905 398167450 398167034 1.720000e-67 267.0
28 TraesCS2A01G350800 chr7D 95.181 166 8 0 2741 2906 459000337 459000172 2.220000e-66 263.0
29 TraesCS2A01G350800 chr7D 95.181 166 8 0 2741 2906 499043264 499043099 2.220000e-66 263.0
30 TraesCS2A01G350800 chr1D 83.721 86 14 0 14 99 362959195 362959280 6.670000e-12 82.4
31 TraesCS2A01G350800 chr5A 82.955 88 15 0 19 106 403706208 403706295 2.400000e-11 80.5
32 TraesCS2A01G350800 chr4B 84.146 82 13 0 18 99 119819095 119819176 2.400000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G350800 chr2A 590964353 590967258 2905 True 5367.000000 5367 100.000000 1 2906 1 chr2A.!!$R3 2905
1 TraesCS2A01G350800 chr2A 590816869 590818184 1315 True 891.000000 891 79.791000 639 1912 1 chr2A.!!$R2 1273
2 TraesCS2A01G350800 chr2A 590973811 590975545 1734 True 872.500000 891 85.947500 348 2160 2 chr2A.!!$R4 1812
3 TraesCS2A01G350800 chr2D 446695458 446699345 3887 True 1861.500000 2867 90.388000 1 2739 2 chr2D.!!$R2 2738
4 TraesCS2A01G350800 chr2D 446726130 446732130 6000 True 1861.000000 2865 90.406000 1 2736 2 chr2D.!!$R3 2735
5 TraesCS2A01G350800 chr2D 446652273 446653579 1306 True 924.000000 924 80.225000 639 1915 1 chr2D.!!$R1 1276
6 TraesCS2A01G350800 chr2D 446929726 446933153 3427 False 575.666667 902 86.597333 348 2138 3 chr2D.!!$F1 1790
7 TraesCS2A01G350800 chr2B 526733224 526735299 2075 True 1347.000000 2078 89.148500 1 2140 2 chr2B.!!$R2 2139
8 TraesCS2A01G350800 chr2B 526670016 526671159 1143 True 881.000000 881 81.223000 797 1915 1 chr2B.!!$R1 1118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 205 0.257328 TGGCTGGAACAACAAGGACA 59.743 50.0 0.00 0.0 38.70 4.02 F
773 4947 0.531532 GTGCAGGCTACGCATCAGAT 60.532 55.0 2.62 0.0 42.32 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 5515 0.110373 GGAAAAACTGGCGCGTGTAG 60.110 55.0 8.43 6.41 0.00 2.74 R
2740 7027 0.106769 TGGGAGCACTTGTGCTTTCA 60.107 50.0 26.08 22.40 46.36 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.810031 CCAACCACGACGGATCCATC 60.810 60.000 13.41 4.85 38.63 3.51
41 42 1.789464 GATCCATCGTCAATCTCACGC 59.211 52.381 0.00 0.00 37.18 5.34
92 93 1.342076 ACGAGGAAGAGTAGGGCATGA 60.342 52.381 0.00 0.00 0.00 3.07
100 101 1.751924 GAGTAGGGCATGAGAGACGTT 59.248 52.381 0.00 0.00 0.00 3.99
154 157 3.702048 CCGCCCCTTCACTCCGAA 61.702 66.667 0.00 0.00 0.00 4.30
202 205 0.257328 TGGCTGGAACAACAAGGACA 59.743 50.000 0.00 0.00 38.70 4.02
206 209 2.917933 CTGGAACAACAAGGACAGTCA 58.082 47.619 2.17 0.00 38.70 3.41
210 213 0.828022 ACAACAAGGACAGTCACCGA 59.172 50.000 2.17 0.00 0.00 4.69
238 241 8.619146 AAATAGTTTTATGTTGCATGTGATCG 57.381 30.769 0.00 0.00 0.00 3.69
245 248 3.197265 TGTTGCATGTGATCGTATGGAG 58.803 45.455 10.04 0.00 0.00 3.86
282 285 4.879295 TGGGGTATCTGATTGTGGAAAT 57.121 40.909 0.00 0.00 0.00 2.17
289 292 7.707893 GGGTATCTGATTGTGGAAATGATTTTG 59.292 37.037 0.00 0.00 0.00 2.44
303 306 4.891627 TGATTTTGTGTGTGTTGATCGT 57.108 36.364 0.00 0.00 0.00 3.73
309 312 5.993106 TTGTGTGTGTTGATCGTTCATTA 57.007 34.783 0.00 0.00 0.00 1.90
312 315 5.931724 TGTGTGTGTTGATCGTTCATTATCT 59.068 36.000 0.00 0.00 0.00 1.98
316 319 3.555547 TGTTGATCGTTCATTATCTGCGG 59.444 43.478 0.00 0.00 0.00 5.69
349 352 3.005791 GGAGGGATTTTGCGATTTATGGG 59.994 47.826 0.00 0.00 0.00 4.00
472 475 6.791887 TTCTAGACTGATCAAGCTGTTTTG 57.208 37.500 0.00 0.00 0.00 2.44
498 501 5.449177 GCTGTCTTGCTGGGTATCAATAAAC 60.449 44.000 0.00 0.00 0.00 2.01
523 526 3.978718 GCTTTCTGTGAAGCTTCTGTT 57.021 42.857 26.09 0.00 46.55 3.16
524 527 4.298744 GCTTTCTGTGAAGCTTCTGTTT 57.701 40.909 26.09 0.00 46.55 2.83
525 528 4.676546 GCTTTCTGTGAAGCTTCTGTTTT 58.323 39.130 26.09 0.00 46.55 2.43
571 608 5.449314 GCGCAGAGAGAAGAAATGACTACTA 60.449 44.000 0.30 0.00 0.00 1.82
761 814 4.395583 GCGACAGCAAGTGCAGGC 62.396 66.667 6.00 0.00 45.16 4.85
773 4947 0.531532 GTGCAGGCTACGCATCAGAT 60.532 55.000 2.62 0.00 42.32 2.90
776 4950 2.037641 TGCAGGCTACGCATCAGATTAT 59.962 45.455 0.00 0.00 33.55 1.28
823 4997 6.010294 AGAAAAGTCTTGATAGTCGACGAA 57.990 37.500 10.46 2.69 33.10 3.85
925 5114 3.183775 GTGTCTATATAAACCGCTTGCCG 59.816 47.826 0.00 0.00 0.00 5.69
947 5136 2.922950 CGCCTTGCCATGCACAGTT 61.923 57.895 0.00 0.00 38.71 3.16
986 5189 2.676839 CTGCTACAGCCTCAACAATCAG 59.323 50.000 0.00 0.00 41.18 2.90
1443 5680 7.510343 ACCTCCAACTAACTAACTACTACCAAA 59.490 37.037 0.00 0.00 0.00 3.28
1446 5683 8.150296 TCCAACTAACTAACTACTACCAAAACC 58.850 37.037 0.00 0.00 0.00 3.27
1500 5753 3.595173 TGTATGTAACTTGCGTGCAGAT 58.405 40.909 0.00 0.00 0.00 2.90
1528 5781 0.528684 CATCGAGGAGAACGAAGGGC 60.529 60.000 0.00 0.00 42.80 5.19
1719 5972 3.035576 GCTAACGTTCAAGGCGGCC 62.036 63.158 12.11 12.11 0.00 6.13
1927 6180 2.424956 GTGCTTGGGTCTGAATTGATCC 59.575 50.000 0.00 0.00 37.73 3.36
2141 6420 7.940850 TGGAGAAGTGATTTTAACTTTTCAGG 58.059 34.615 8.52 0.00 39.38 3.86
2202 6485 8.976986 ATGTTTCATTTACTTCAGAGATTTGC 57.023 30.769 0.00 0.00 0.00 3.68
2203 6486 7.939782 TGTTTCATTTACTTCAGAGATTTGCA 58.060 30.769 0.00 0.00 0.00 4.08
2204 6487 8.579006 TGTTTCATTTACTTCAGAGATTTGCAT 58.421 29.630 0.00 0.00 0.00 3.96
2205 6488 9.070149 GTTTCATTTACTTCAGAGATTTGCATC 57.930 33.333 0.00 0.00 0.00 3.91
2206 6489 7.926674 TCATTTACTTCAGAGATTTGCATCA 57.073 32.000 0.00 0.00 0.00 3.07
2207 6490 8.515695 TCATTTACTTCAGAGATTTGCATCAT 57.484 30.769 0.00 0.00 0.00 2.45
2208 6491 8.963725 TCATTTACTTCAGAGATTTGCATCATT 58.036 29.630 0.00 0.00 0.00 2.57
2209 6492 9.582431 CATTTACTTCAGAGATTTGCATCATTT 57.418 29.630 0.00 0.00 0.00 2.32
2210 6493 8.975410 TTTACTTCAGAGATTTGCATCATTTG 57.025 30.769 0.00 0.00 0.00 2.32
2218 6501 8.357402 CAGAGATTTGCATCATTTGGATATTGA 58.643 33.333 0.00 0.00 33.95 2.57
2383 6669 8.879342 AACGATTTCACAAATATGTTTTCCAA 57.121 26.923 0.00 0.00 37.82 3.53
2401 6687 8.327429 GTTTTCCAATATTTCACTGTTGTTGTG 58.673 33.333 0.00 0.00 36.82 3.33
2447 6733 5.047660 GGGTGTTAGCAACATGGTCAAAATA 60.048 40.000 0.00 0.00 44.35 1.40
2505 6791 8.261522 GGGCAACAAATATTTTAATTGGAGGTA 58.738 33.333 14.16 0.00 39.74 3.08
2569 6855 0.325296 CTCCACTAGGTAGGCCCACA 60.325 60.000 3.03 0.00 35.89 4.17
2580 6866 4.593634 AGGTAGGCCCACAGAGATATAAAC 59.406 45.833 3.03 0.00 34.66 2.01
2591 6877 6.884295 CACAGAGATATAAACCCCAACAAAGA 59.116 38.462 0.00 0.00 0.00 2.52
2592 6878 6.884836 ACAGAGATATAAACCCCAACAAAGAC 59.115 38.462 0.00 0.00 0.00 3.01
2596 6882 6.607198 AGATATAAACCCCAACAAAGACCATG 59.393 38.462 0.00 0.00 0.00 3.66
2597 6883 2.765689 AACCCCAACAAAGACCATGA 57.234 45.000 0.00 0.00 0.00 3.07
2617 6903 2.656069 GGCCCAAGCTCACGTCCTA 61.656 63.158 0.00 0.00 39.73 2.94
2680 6966 0.749454 GGCATGGGCACTTGTAGGAG 60.749 60.000 3.52 0.00 43.71 3.69
2719 7006 0.535102 ACAAAGCAACCCTCACTCGG 60.535 55.000 0.00 0.00 0.00 4.63
2736 7023 2.165845 CTCGGATAAACTTCACTCGGGT 59.834 50.000 0.00 0.00 0.00 5.28
2739 7026 3.259902 GGATAAACTTCACTCGGGTCAC 58.740 50.000 0.00 0.00 0.00 3.67
2740 7027 3.056035 GGATAAACTTCACTCGGGTCACT 60.056 47.826 0.00 0.00 0.00 3.41
2741 7028 2.240493 AAACTTCACTCGGGTCACTG 57.760 50.000 0.00 0.00 0.00 3.66
2742 7029 1.410004 AACTTCACTCGGGTCACTGA 58.590 50.000 0.00 0.00 0.00 3.41
2743 7030 1.410004 ACTTCACTCGGGTCACTGAA 58.590 50.000 0.00 0.00 0.00 3.02
2744 7031 1.760613 ACTTCACTCGGGTCACTGAAA 59.239 47.619 0.00 0.00 0.00 2.69
2745 7032 2.224066 ACTTCACTCGGGTCACTGAAAG 60.224 50.000 0.00 0.00 42.29 2.62
2746 7033 0.033504 TCACTCGGGTCACTGAAAGC 59.966 55.000 0.00 0.00 37.60 3.51
2747 7034 0.249868 CACTCGGGTCACTGAAAGCA 60.250 55.000 0.00 0.00 37.60 3.91
2748 7035 0.249911 ACTCGGGTCACTGAAAGCAC 60.250 55.000 0.00 0.00 37.60 4.40
2749 7036 0.249868 CTCGGGTCACTGAAAGCACA 60.250 55.000 0.00 0.00 37.60 4.57
2750 7037 0.179234 TCGGGTCACTGAAAGCACAA 59.821 50.000 0.00 0.00 37.60 3.33
2751 7038 0.588252 CGGGTCACTGAAAGCACAAG 59.412 55.000 0.00 0.00 37.60 3.16
2752 7039 1.680338 GGGTCACTGAAAGCACAAGT 58.320 50.000 0.00 0.00 37.60 3.16
2753 7040 1.334869 GGGTCACTGAAAGCACAAGTG 59.665 52.381 0.00 0.00 37.60 3.16
2764 7051 2.864114 CACAAGTGCTCCCAGGATG 58.136 57.895 0.00 0.00 0.00 3.51
2765 7052 0.325933 CACAAGTGCTCCCAGGATGA 59.674 55.000 0.00 0.00 39.69 2.92
2766 7053 1.064906 CACAAGTGCTCCCAGGATGAT 60.065 52.381 0.00 0.00 39.69 2.45
2767 7054 1.637553 ACAAGTGCTCCCAGGATGATT 59.362 47.619 0.00 0.00 39.69 2.57
2768 7055 2.042162 ACAAGTGCTCCCAGGATGATTT 59.958 45.455 0.00 0.00 39.69 2.17
2769 7056 3.094572 CAAGTGCTCCCAGGATGATTTT 58.905 45.455 0.00 0.00 39.69 1.82
2770 7057 2.731572 AGTGCTCCCAGGATGATTTTG 58.268 47.619 0.00 0.00 39.69 2.44
2771 7058 1.753073 GTGCTCCCAGGATGATTTTGG 59.247 52.381 0.00 0.00 39.69 3.28
2772 7059 1.358787 TGCTCCCAGGATGATTTTGGT 59.641 47.619 0.00 0.00 39.69 3.67
2773 7060 2.580322 TGCTCCCAGGATGATTTTGGTA 59.420 45.455 0.00 0.00 39.69 3.25
2774 7061 3.011144 TGCTCCCAGGATGATTTTGGTAA 59.989 43.478 0.00 0.00 39.69 2.85
2775 7062 4.218312 GCTCCCAGGATGATTTTGGTAAT 58.782 43.478 0.00 0.00 39.69 1.89
2776 7063 4.651045 GCTCCCAGGATGATTTTGGTAATT 59.349 41.667 0.00 0.00 39.69 1.40
2777 7064 5.833131 GCTCCCAGGATGATTTTGGTAATTA 59.167 40.000 0.00 0.00 39.69 1.40
2778 7065 6.323739 GCTCCCAGGATGATTTTGGTAATTAA 59.676 38.462 0.00 0.00 39.69 1.40
2779 7066 7.015584 GCTCCCAGGATGATTTTGGTAATTAAT 59.984 37.037 0.00 0.00 39.69 1.40
2780 7067 8.248904 TCCCAGGATGATTTTGGTAATTAATG 57.751 34.615 0.00 0.00 39.69 1.90
2781 7068 7.843760 TCCCAGGATGATTTTGGTAATTAATGT 59.156 33.333 0.00 0.00 39.69 2.71
2782 7069 8.143835 CCCAGGATGATTTTGGTAATTAATGTC 58.856 37.037 0.00 0.00 39.69 3.06
2783 7070 8.694540 CCAGGATGATTTTGGTAATTAATGTCA 58.305 33.333 0.00 0.00 39.69 3.58
2786 7073 9.868277 GGATGATTTTGGTAATTAATGTCAACA 57.132 29.630 0.00 0.00 0.00 3.33
2820 7107 9.263446 TGTTGGACTAATATCTTTACCTAGTGT 57.737 33.333 0.00 0.00 0.00 3.55
2833 7120 9.256228 TCTTTACCTAGTGTATTTCAGATGAGT 57.744 33.333 0.00 0.00 0.00 3.41
2834 7121 9.877178 CTTTACCTAGTGTATTTCAGATGAGTT 57.123 33.333 0.00 0.00 0.00 3.01
2835 7122 9.871238 TTTACCTAGTGTATTTCAGATGAGTTC 57.129 33.333 0.00 0.00 0.00 3.01
2836 7123 7.482169 ACCTAGTGTATTTCAGATGAGTTCA 57.518 36.000 0.00 0.00 0.00 3.18
2837 7124 7.907389 ACCTAGTGTATTTCAGATGAGTTCAA 58.093 34.615 0.00 0.00 0.00 2.69
2838 7125 7.819900 ACCTAGTGTATTTCAGATGAGTTCAAC 59.180 37.037 0.00 0.00 0.00 3.18
2839 7126 7.819415 CCTAGTGTATTTCAGATGAGTTCAACA 59.181 37.037 0.00 0.00 0.00 3.33
2840 7127 9.208022 CTAGTGTATTTCAGATGAGTTCAACAA 57.792 33.333 0.00 0.00 0.00 2.83
2841 7128 8.627208 AGTGTATTTCAGATGAGTTCAACAAT 57.373 30.769 0.00 0.00 0.00 2.71
2842 7129 8.509690 AGTGTATTTCAGATGAGTTCAACAATG 58.490 33.333 0.00 0.00 0.00 2.82
2843 7130 7.752239 GTGTATTTCAGATGAGTTCAACAATGG 59.248 37.037 0.00 0.00 0.00 3.16
2844 7131 6.906157 ATTTCAGATGAGTTCAACAATGGT 57.094 33.333 0.00 0.00 0.00 3.55
2845 7132 5.694231 TTCAGATGAGTTCAACAATGGTG 57.306 39.130 0.00 0.00 0.00 4.17
2846 7133 4.717877 TCAGATGAGTTCAACAATGGTGT 58.282 39.130 0.00 0.00 40.75 4.16
2847 7134 4.516321 TCAGATGAGTTCAACAATGGTGTG 59.484 41.667 0.00 0.00 38.27 3.82
2848 7135 3.822735 AGATGAGTTCAACAATGGTGTGG 59.177 43.478 0.00 0.00 38.27 4.17
2849 7136 1.680735 TGAGTTCAACAATGGTGTGGC 59.319 47.619 0.00 0.00 38.27 5.01
2850 7137 1.680735 GAGTTCAACAATGGTGTGGCA 59.319 47.619 0.00 0.00 38.27 4.92
2851 7138 2.100584 GAGTTCAACAATGGTGTGGCAA 59.899 45.455 0.00 0.00 38.27 4.52
2852 7139 2.101249 AGTTCAACAATGGTGTGGCAAG 59.899 45.455 0.00 0.00 38.27 4.01
2853 7140 1.039068 TCAACAATGGTGTGGCAAGG 58.961 50.000 0.00 0.00 38.27 3.61
2854 7141 1.039068 CAACAATGGTGTGGCAAGGA 58.961 50.000 0.00 0.00 38.27 3.36
2855 7142 1.039856 AACAATGGTGTGGCAAGGAC 58.960 50.000 0.00 0.00 38.27 3.85
2856 7143 0.106268 ACAATGGTGTGGCAAGGACA 60.106 50.000 0.00 0.00 36.31 4.02
2857 7144 1.039068 CAATGGTGTGGCAAGGACAA 58.961 50.000 0.00 0.00 0.00 3.18
2858 7145 1.000060 CAATGGTGTGGCAAGGACAAG 60.000 52.381 0.00 0.00 0.00 3.16
2859 7146 0.478072 ATGGTGTGGCAAGGACAAGA 59.522 50.000 0.00 0.00 0.00 3.02
2860 7147 0.179020 TGGTGTGGCAAGGACAAGAG 60.179 55.000 0.00 0.00 0.00 2.85
2861 7148 0.890996 GGTGTGGCAAGGACAAGAGG 60.891 60.000 0.00 0.00 0.00 3.69
2862 7149 0.108585 GTGTGGCAAGGACAAGAGGA 59.891 55.000 0.00 0.00 0.00 3.71
2863 7150 1.067295 TGTGGCAAGGACAAGAGGAT 58.933 50.000 0.00 0.00 0.00 3.24
2864 7151 1.271543 TGTGGCAAGGACAAGAGGATG 60.272 52.381 0.00 0.00 0.00 3.51
2865 7152 1.067295 TGGCAAGGACAAGAGGATGT 58.933 50.000 0.00 0.00 35.90 3.06
2866 7153 1.271543 TGGCAAGGACAAGAGGATGTG 60.272 52.381 0.00 0.00 32.57 3.21
2867 7154 1.457346 GCAAGGACAAGAGGATGTGG 58.543 55.000 0.00 0.00 32.57 4.17
2868 7155 1.003580 GCAAGGACAAGAGGATGTGGA 59.996 52.381 0.00 0.00 32.57 4.02
2869 7156 2.553028 GCAAGGACAAGAGGATGTGGAA 60.553 50.000 0.00 0.00 32.57 3.53
2870 7157 3.077359 CAAGGACAAGAGGATGTGGAAC 58.923 50.000 0.00 0.00 32.57 3.62
2871 7158 1.630878 AGGACAAGAGGATGTGGAACC 59.369 52.381 0.00 0.00 34.36 3.62
2872 7159 1.340114 GGACAAGAGGATGTGGAACCC 60.340 57.143 0.00 0.00 34.36 4.11
2873 7160 0.698818 ACAAGAGGATGTGGAACCCC 59.301 55.000 0.00 0.00 34.36 4.95
2874 7161 0.995024 CAAGAGGATGTGGAACCCCT 59.005 55.000 0.00 0.00 40.84 4.79
2875 7162 1.355720 CAAGAGGATGTGGAACCCCTT 59.644 52.381 0.00 0.00 38.71 3.95
2876 7163 1.290134 AGAGGATGTGGAACCCCTTC 58.710 55.000 0.00 0.00 38.71 3.46
2877 7164 0.991920 GAGGATGTGGAACCCCTTCA 59.008 55.000 0.00 0.00 38.71 3.02
2878 7165 1.354368 GAGGATGTGGAACCCCTTCAA 59.646 52.381 0.00 0.00 38.71 2.69
2879 7166 1.786441 AGGATGTGGAACCCCTTCAAA 59.214 47.619 0.00 0.00 35.72 2.69
2880 7167 2.178984 AGGATGTGGAACCCCTTCAAAA 59.821 45.455 0.00 0.00 35.72 2.44
2881 7168 3.173151 GGATGTGGAACCCCTTCAAAAT 58.827 45.455 0.00 0.00 34.36 1.82
2882 7169 3.055891 GGATGTGGAACCCCTTCAAAATG 60.056 47.826 0.00 0.00 34.36 2.32
2883 7170 1.691434 TGTGGAACCCCTTCAAAATGC 59.309 47.619 0.00 0.00 34.36 3.56
2884 7171 1.970640 GTGGAACCCCTTCAAAATGCT 59.029 47.619 0.00 0.00 0.00 3.79
2885 7172 3.161866 GTGGAACCCCTTCAAAATGCTA 58.838 45.455 0.00 0.00 0.00 3.49
2886 7173 3.576550 GTGGAACCCCTTCAAAATGCTAA 59.423 43.478 0.00 0.00 0.00 3.09
2887 7174 3.831911 TGGAACCCCTTCAAAATGCTAAG 59.168 43.478 0.00 0.00 0.00 2.18
2888 7175 3.195610 GGAACCCCTTCAAAATGCTAAGG 59.804 47.826 0.00 0.00 39.63 2.69
2889 7176 3.825908 ACCCCTTCAAAATGCTAAGGA 57.174 42.857 0.00 0.00 42.01 3.36
2890 7177 3.431415 ACCCCTTCAAAATGCTAAGGAC 58.569 45.455 0.00 0.00 42.01 3.85
2891 7178 3.181423 ACCCCTTCAAAATGCTAAGGACA 60.181 43.478 0.00 0.00 42.01 4.02
2892 7179 3.831911 CCCCTTCAAAATGCTAAGGACAA 59.168 43.478 0.00 0.00 42.01 3.18
2893 7180 4.283212 CCCCTTCAAAATGCTAAGGACAAA 59.717 41.667 0.00 0.00 42.01 2.83
2894 7181 5.473039 CCCTTCAAAATGCTAAGGACAAAG 58.527 41.667 0.00 0.00 42.01 2.77
2895 7182 5.243730 CCCTTCAAAATGCTAAGGACAAAGA 59.756 40.000 0.00 0.00 42.01 2.52
2896 7183 6.071165 CCCTTCAAAATGCTAAGGACAAAGAT 60.071 38.462 0.00 0.00 42.01 2.40
2897 7184 7.381323 CCTTCAAAATGCTAAGGACAAAGATT 58.619 34.615 0.00 0.00 42.01 2.40
2898 7185 7.330208 CCTTCAAAATGCTAAGGACAAAGATTG 59.670 37.037 0.00 0.00 42.01 2.67
2899 7186 6.690530 TCAAAATGCTAAGGACAAAGATTGG 58.309 36.000 0.00 0.00 34.12 3.16
2900 7187 4.725790 AATGCTAAGGACAAAGATTGGC 57.274 40.909 0.00 0.00 38.21 4.52
2901 7188 3.153369 TGCTAAGGACAAAGATTGGCA 57.847 42.857 0.00 0.00 41.76 4.92
2902 7189 3.495331 TGCTAAGGACAAAGATTGGCAA 58.505 40.909 0.68 0.68 41.76 4.52
2903 7190 3.894427 TGCTAAGGACAAAGATTGGCAAA 59.106 39.130 3.01 0.00 41.76 3.68
2904 7191 4.343526 TGCTAAGGACAAAGATTGGCAAAA 59.656 37.500 3.01 0.00 41.76 2.44
2905 7192 4.925646 GCTAAGGACAAAGATTGGCAAAAG 59.074 41.667 3.01 0.00 41.76 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.294138 GGATCCGTCGTGGTTGGAA 59.706 57.895 0.00 0.00 39.52 3.53
28 29 2.100631 GGTGGGCGTGAGATTGACG 61.101 63.158 0.00 0.00 39.87 4.35
41 42 3.751246 CTGCACATTGCCGGTGGG 61.751 66.667 1.90 0.00 44.23 4.61
50 51 0.106819 GATCCCAGAGCCTGCACATT 60.107 55.000 0.00 0.00 0.00 2.71
63 64 0.752009 CTCTTCCTCGTCGGATCCCA 60.752 60.000 6.06 0.00 42.70 4.37
92 93 1.299926 GACACGCACCAACGTCTCT 60.300 57.895 0.00 0.00 46.34 3.10
178 181 2.233271 CTTGTTGTTCCAGCCATGTCT 58.767 47.619 0.00 0.00 0.00 3.41
202 205 7.739498 ACATAAAACTATTTTGTCGGTGACT 57.261 32.000 0.00 0.00 34.19 3.41
206 209 6.740110 TGCAACATAAAACTATTTTGTCGGT 58.260 32.000 0.00 0.00 34.19 4.69
210 213 9.709495 ATCACATGCAACATAAAACTATTTTGT 57.291 25.926 0.00 0.00 34.19 2.83
238 241 9.965824 CCCATTTACAAATAATCAACTCCATAC 57.034 33.333 0.00 0.00 0.00 2.39
245 248 9.965824 CAGATACCCCATTTACAAATAATCAAC 57.034 33.333 0.00 0.00 0.00 3.18
282 285 4.891627 ACGATCAACACACACAAAATCA 57.108 36.364 0.00 0.00 0.00 2.57
289 292 6.243551 CAGATAATGAACGATCAACACACAC 58.756 40.000 0.00 0.00 39.49 3.82
303 306 0.179121 ACGCGTCCGCAGATAATGAA 60.179 50.000 5.58 0.00 42.06 2.57
397 400 0.171903 AATGCTGGCTCATTCAACGC 59.828 50.000 0.81 0.00 31.49 4.84
472 475 1.339055 TGATACCCAGCAAGACAGCAC 60.339 52.381 0.00 0.00 36.85 4.40
498 501 1.131420 GCTTCACAGAAAGCGCGAG 59.869 57.895 12.10 0.00 41.98 5.03
520 523 3.128349 GGAGTGAGTTACGCAGAAAACA 58.872 45.455 0.00 0.00 31.49 2.83
523 526 2.288825 CCAGGAGTGAGTTACGCAGAAA 60.289 50.000 0.00 0.00 0.00 2.52
524 527 1.272490 CCAGGAGTGAGTTACGCAGAA 59.728 52.381 0.00 0.00 0.00 3.02
525 528 0.888619 CCAGGAGTGAGTTACGCAGA 59.111 55.000 0.00 0.00 0.00 4.26
571 608 1.356624 GCGTTTGTGCTCACTGCTT 59.643 52.632 1.47 0.00 43.37 3.91
587 624 1.985334 TCTGGTACGTGTATTGTGCG 58.015 50.000 0.00 0.00 0.00 5.34
773 4947 4.220382 CAGGGGTCATGTTTCAAAGCATAA 59.780 41.667 0.00 0.00 0.00 1.90
776 4950 1.962807 CAGGGGTCATGTTTCAAAGCA 59.037 47.619 0.00 0.00 0.00 3.91
823 4997 0.319555 CGGTCACAGATTCACACGGT 60.320 55.000 0.00 0.00 0.00 4.83
947 5136 3.436001 GCTGCTTGCTTACGAGGTA 57.564 52.632 0.00 0.00 38.95 3.08
986 5189 0.652592 CGCCATGTCGAATCAAGGTC 59.347 55.000 0.00 0.00 0.00 3.85
1284 5515 0.110373 GGAAAAACTGGCGCGTGTAG 60.110 55.000 8.43 6.41 0.00 2.74
1443 5680 2.093816 GGAGAGGTAAATTCGTCCGGTT 60.094 50.000 0.00 0.00 0.00 4.44
1446 5683 2.953466 TGGAGAGGTAAATTCGTCCG 57.047 50.000 0.00 0.00 0.00 4.79
1528 5781 0.179111 TCGCAGTAATCCTTGCTCGG 60.179 55.000 0.00 0.00 38.16 4.63
1719 5972 3.077359 GTTGGTCATCCAGAACCAGAAG 58.923 50.000 0.00 0.00 45.22 2.85
2401 6687 5.106157 CCCCTAATCACTGTGTTGTTTCATC 60.106 44.000 7.79 0.00 0.00 2.92
2414 6700 3.329520 TGTTGCTAACACCCCTAATCACT 59.670 43.478 0.00 0.00 36.25 3.41
2447 6733 6.480320 GTCTAACAACATCCGCAATAATCTCT 59.520 38.462 0.00 0.00 0.00 3.10
2505 6791 9.144747 CTTCGCTATAAGTTCTACATTATGCAT 57.855 33.333 3.79 3.79 0.00 3.96
2508 6794 9.477484 AACCTTCGCTATAAGTTCTACATTATG 57.523 33.333 0.00 0.00 0.00 1.90
2511 6797 7.277981 CACAACCTTCGCTATAAGTTCTACATT 59.722 37.037 0.00 0.00 0.00 2.71
2556 6842 5.610429 TTATATCTCTGTGGGCCTACCTA 57.390 43.478 17.66 3.53 41.11 3.08
2569 6855 6.011981 TGGTCTTTGTTGGGGTTTATATCTCT 60.012 38.462 0.00 0.00 0.00 3.10
2580 6866 1.895131 CCTTCATGGTCTTTGTTGGGG 59.105 52.381 0.00 0.00 0.00 4.96
2591 6877 1.000396 GAGCTTGGGCCTTCATGGT 60.000 57.895 4.53 0.46 39.73 3.55
2592 6878 1.000521 TGAGCTTGGGCCTTCATGG 60.001 57.895 4.53 0.00 39.73 3.66
2596 6882 2.032681 ACGTGAGCTTGGGCCTTC 59.967 61.111 4.53 0.00 39.73 3.46
2597 6883 2.032681 GACGTGAGCTTGGGCCTT 59.967 61.111 4.53 0.00 39.73 4.35
2617 6903 4.202599 TGCTGACATTATCTTGGGCCATAT 60.203 41.667 7.26 7.12 0.00 1.78
2680 6966 1.677637 GGACCGAGTGAGGTGATCCC 61.678 65.000 0.00 0.00 46.09 3.85
2719 7006 3.927142 CAGTGACCCGAGTGAAGTTTATC 59.073 47.826 0.00 0.00 0.00 1.75
2736 7023 1.942657 GAGCACTTGTGCTTTCAGTGA 59.057 47.619 26.08 0.00 46.36 3.41
2739 7026 0.595095 GGGAGCACTTGTGCTTTCAG 59.405 55.000 26.08 0.00 46.36 3.02
2740 7027 0.106769 TGGGAGCACTTGTGCTTTCA 60.107 50.000 26.08 22.40 46.36 2.69
2741 7028 0.595095 CTGGGAGCACTTGTGCTTTC 59.405 55.000 26.08 20.54 46.36 2.62
2742 7029 0.825010 CCTGGGAGCACTTGTGCTTT 60.825 55.000 26.08 8.33 46.36 3.51
2743 7030 1.228367 CCTGGGAGCACTTGTGCTT 60.228 57.895 26.08 12.37 46.36 3.91
2745 7032 1.001641 ATCCTGGGAGCACTTGTGC 60.002 57.895 16.98 16.98 0.00 4.57
2746 7033 0.325933 TCATCCTGGGAGCACTTGTG 59.674 55.000 0.00 0.00 0.00 3.33
2747 7034 1.293062 ATCATCCTGGGAGCACTTGT 58.707 50.000 0.00 0.00 0.00 3.16
2748 7035 2.431954 AATCATCCTGGGAGCACTTG 57.568 50.000 0.00 0.00 0.00 3.16
2749 7036 3.094572 CAAAATCATCCTGGGAGCACTT 58.905 45.455 0.00 0.00 0.00 3.16
2750 7037 2.622452 CCAAAATCATCCTGGGAGCACT 60.622 50.000 0.00 0.00 0.00 4.40
2751 7038 1.753073 CCAAAATCATCCTGGGAGCAC 59.247 52.381 0.00 0.00 0.00 4.40
2752 7039 1.358787 ACCAAAATCATCCTGGGAGCA 59.641 47.619 0.00 0.00 34.31 4.26
2753 7040 2.149973 ACCAAAATCATCCTGGGAGC 57.850 50.000 0.00 0.00 34.31 4.70
2754 7041 7.896383 TTAATTACCAAAATCATCCTGGGAG 57.104 36.000 0.00 0.00 34.31 4.30
2755 7042 7.843760 ACATTAATTACCAAAATCATCCTGGGA 59.156 33.333 0.00 0.00 34.31 4.37
2756 7043 8.021898 ACATTAATTACCAAAATCATCCTGGG 57.978 34.615 0.00 0.00 34.31 4.45
2757 7044 8.694540 TGACATTAATTACCAAAATCATCCTGG 58.305 33.333 0.00 0.00 36.24 4.45
2760 7047 9.868277 TGTTGACATTAATTACCAAAATCATCC 57.132 29.630 0.00 0.00 0.00 3.51
2794 7081 9.263446 ACACTAGGTAAAGATATTAGTCCAACA 57.737 33.333 0.00 0.00 0.00 3.33
2807 7094 9.256228 ACTCATCTGAAATACACTAGGTAAAGA 57.744 33.333 0.00 0.00 35.14 2.52
2808 7095 9.877178 AACTCATCTGAAATACACTAGGTAAAG 57.123 33.333 0.00 0.00 35.14 1.85
2809 7096 9.871238 GAACTCATCTGAAATACACTAGGTAAA 57.129 33.333 0.00 0.00 35.14 2.01
2810 7097 9.031537 TGAACTCATCTGAAATACACTAGGTAA 57.968 33.333 0.00 0.00 35.14 2.85
2811 7098 8.589701 TGAACTCATCTGAAATACACTAGGTA 57.410 34.615 0.00 0.00 36.16 3.08
2812 7099 7.482169 TGAACTCATCTGAAATACACTAGGT 57.518 36.000 0.00 0.00 0.00 3.08
2813 7100 7.819415 TGTTGAACTCATCTGAAATACACTAGG 59.181 37.037 0.00 0.00 0.00 3.02
2814 7101 8.763049 TGTTGAACTCATCTGAAATACACTAG 57.237 34.615 0.00 0.00 0.00 2.57
2815 7102 9.725019 ATTGTTGAACTCATCTGAAATACACTA 57.275 29.630 0.00 0.00 0.00 2.74
2816 7103 8.509690 CATTGTTGAACTCATCTGAAATACACT 58.490 33.333 0.00 0.00 0.00 3.55
2817 7104 7.752239 CCATTGTTGAACTCATCTGAAATACAC 59.248 37.037 0.00 0.00 0.00 2.90
2818 7105 7.448161 ACCATTGTTGAACTCATCTGAAATACA 59.552 33.333 0.00 0.00 0.00 2.29
2819 7106 7.752239 CACCATTGTTGAACTCATCTGAAATAC 59.248 37.037 0.00 0.00 0.00 1.89
2820 7107 7.448161 ACACCATTGTTGAACTCATCTGAAATA 59.552 33.333 0.00 0.00 28.43 1.40
2821 7108 6.266103 ACACCATTGTTGAACTCATCTGAAAT 59.734 34.615 0.00 0.00 28.43 2.17
2822 7109 5.593909 ACACCATTGTTGAACTCATCTGAAA 59.406 36.000 0.00 0.00 28.43 2.69
2823 7110 5.008911 CACACCATTGTTGAACTCATCTGAA 59.991 40.000 0.00 0.00 31.66 3.02
2824 7111 4.516321 CACACCATTGTTGAACTCATCTGA 59.484 41.667 0.00 0.00 31.66 3.27
2825 7112 4.320714 CCACACCATTGTTGAACTCATCTG 60.321 45.833 0.00 0.00 31.66 2.90
2826 7113 3.822735 CCACACCATTGTTGAACTCATCT 59.177 43.478 0.00 0.00 31.66 2.90
2827 7114 3.612479 GCCACACCATTGTTGAACTCATC 60.612 47.826 0.00 0.00 31.66 2.92
2828 7115 2.297033 GCCACACCATTGTTGAACTCAT 59.703 45.455 0.00 0.00 31.66 2.90
2829 7116 1.680735 GCCACACCATTGTTGAACTCA 59.319 47.619 0.00 0.00 31.66 3.41
2830 7117 1.680735 TGCCACACCATTGTTGAACTC 59.319 47.619 0.00 0.00 31.66 3.01
2831 7118 1.774110 TGCCACACCATTGTTGAACT 58.226 45.000 0.00 0.00 31.66 3.01
2832 7119 2.472816 CTTGCCACACCATTGTTGAAC 58.527 47.619 0.00 0.00 31.66 3.18
2833 7120 1.411977 CCTTGCCACACCATTGTTGAA 59.588 47.619 0.00 0.00 31.66 2.69
2834 7121 1.039068 CCTTGCCACACCATTGTTGA 58.961 50.000 0.00 0.00 31.66 3.18
2835 7122 1.039068 TCCTTGCCACACCATTGTTG 58.961 50.000 0.00 0.00 31.66 3.33
2836 7123 1.039856 GTCCTTGCCACACCATTGTT 58.960 50.000 0.00 0.00 31.66 2.83
2837 7124 0.106268 TGTCCTTGCCACACCATTGT 60.106 50.000 0.00 0.00 35.84 2.71
2838 7125 1.000060 CTTGTCCTTGCCACACCATTG 60.000 52.381 0.00 0.00 0.00 2.82
2839 7126 1.133513 TCTTGTCCTTGCCACACCATT 60.134 47.619 0.00 0.00 0.00 3.16
2840 7127 0.478072 TCTTGTCCTTGCCACACCAT 59.522 50.000 0.00 0.00 0.00 3.55
2841 7128 0.179020 CTCTTGTCCTTGCCACACCA 60.179 55.000 0.00 0.00 0.00 4.17
2842 7129 0.890996 CCTCTTGTCCTTGCCACACC 60.891 60.000 0.00 0.00 0.00 4.16
2843 7130 0.108585 TCCTCTTGTCCTTGCCACAC 59.891 55.000 0.00 0.00 0.00 3.82
2844 7131 1.067295 ATCCTCTTGTCCTTGCCACA 58.933 50.000 0.00 0.00 0.00 4.17
2845 7132 1.271597 ACATCCTCTTGTCCTTGCCAC 60.272 52.381 0.00 0.00 0.00 5.01
2846 7133 1.067295 ACATCCTCTTGTCCTTGCCA 58.933 50.000 0.00 0.00 0.00 4.92
2847 7134 1.457346 CACATCCTCTTGTCCTTGCC 58.543 55.000 0.00 0.00 0.00 4.52
2848 7135 1.003580 TCCACATCCTCTTGTCCTTGC 59.996 52.381 0.00 0.00 0.00 4.01
2849 7136 3.077359 GTTCCACATCCTCTTGTCCTTG 58.923 50.000 0.00 0.00 0.00 3.61
2850 7137 2.040412 GGTTCCACATCCTCTTGTCCTT 59.960 50.000 0.00 0.00 0.00 3.36
2851 7138 1.630878 GGTTCCACATCCTCTTGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
2852 7139 1.340114 GGGTTCCACATCCTCTTGTCC 60.340 57.143 0.00 0.00 0.00 4.02
2853 7140 1.340114 GGGGTTCCACATCCTCTTGTC 60.340 57.143 0.00 0.00 0.00 3.18
2854 7141 0.698818 GGGGTTCCACATCCTCTTGT 59.301 55.000 0.00 0.00 0.00 3.16
2855 7142 0.995024 AGGGGTTCCACATCCTCTTG 59.005 55.000 0.00 0.00 28.96 3.02
2856 7143 1.636003 GAAGGGGTTCCACATCCTCTT 59.364 52.381 0.00 0.00 45.92 2.85
2857 7144 1.290134 GAAGGGGTTCCACATCCTCT 58.710 55.000 0.00 0.00 35.87 3.69
2858 7145 0.991920 TGAAGGGGTTCCACATCCTC 59.008 55.000 0.00 0.00 34.83 3.71
2859 7146 1.455822 TTGAAGGGGTTCCACATCCT 58.544 50.000 0.00 0.00 34.83 3.24
2860 7147 2.302587 TTTGAAGGGGTTCCACATCC 57.697 50.000 0.00 0.00 34.83 3.51
2861 7148 3.617288 GCATTTTGAAGGGGTTCCACATC 60.617 47.826 0.00 0.00 34.83 3.06
2862 7149 2.302733 GCATTTTGAAGGGGTTCCACAT 59.697 45.455 0.00 0.00 34.83 3.21
2863 7150 1.691434 GCATTTTGAAGGGGTTCCACA 59.309 47.619 0.00 0.00 34.83 4.17
2864 7151 1.970640 AGCATTTTGAAGGGGTTCCAC 59.029 47.619 0.00 0.00 34.83 4.02
2865 7152 2.397044 AGCATTTTGAAGGGGTTCCA 57.603 45.000 0.00 0.00 34.83 3.53
2866 7153 3.195610 CCTTAGCATTTTGAAGGGGTTCC 59.804 47.826 0.00 0.00 36.81 3.62
2867 7154 4.082190 GTCCTTAGCATTTTGAAGGGGTTC 60.082 45.833 0.00 0.00 40.23 3.62
2868 7155 3.832490 GTCCTTAGCATTTTGAAGGGGTT 59.168 43.478 0.00 0.00 40.23 4.11
2869 7156 3.181423 TGTCCTTAGCATTTTGAAGGGGT 60.181 43.478 0.00 0.00 40.23 4.95
2870 7157 3.430453 TGTCCTTAGCATTTTGAAGGGG 58.570 45.455 0.00 0.00 40.23 4.79
2871 7158 5.243730 TCTTTGTCCTTAGCATTTTGAAGGG 59.756 40.000 0.00 0.00 40.23 3.95
2872 7159 6.331369 TCTTTGTCCTTAGCATTTTGAAGG 57.669 37.500 0.00 0.00 41.03 3.46
2873 7160 7.330208 CCAATCTTTGTCCTTAGCATTTTGAAG 59.670 37.037 0.00 0.00 0.00 3.02
2874 7161 7.153985 CCAATCTTTGTCCTTAGCATTTTGAA 58.846 34.615 0.00 0.00 0.00 2.69
2875 7162 6.690530 CCAATCTTTGTCCTTAGCATTTTGA 58.309 36.000 0.00 0.00 0.00 2.69
2876 7163 5.349543 GCCAATCTTTGTCCTTAGCATTTTG 59.650 40.000 0.00 0.00 0.00 2.44
2877 7164 5.011943 TGCCAATCTTTGTCCTTAGCATTTT 59.988 36.000 0.00 0.00 0.00 1.82
2878 7165 4.527816 TGCCAATCTTTGTCCTTAGCATTT 59.472 37.500 0.00 0.00 0.00 2.32
2879 7166 4.088634 TGCCAATCTTTGTCCTTAGCATT 58.911 39.130 0.00 0.00 0.00 3.56
2880 7167 3.700538 TGCCAATCTTTGTCCTTAGCAT 58.299 40.909 0.00 0.00 0.00 3.79
2881 7168 3.153369 TGCCAATCTTTGTCCTTAGCA 57.847 42.857 0.00 0.00 0.00 3.49
2882 7169 4.519540 TTTGCCAATCTTTGTCCTTAGC 57.480 40.909 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.