Multiple sequence alignment - TraesCS2A01G350700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G350700 chr2A 100.000 2922 0 0 1 2922 590818796 590815875 0.000000e+00 5397.0
1 TraesCS2A01G350700 chr2A 79.776 1340 181 47 613 1928 590966620 590965347 0.000000e+00 891.0
2 TraesCS2A01G350700 chr2A 84.667 750 88 20 1201 1928 590974813 590974069 0.000000e+00 723.0
3 TraesCS2A01G350700 chr2A 89.247 279 23 3 2588 2859 760111468 760111190 2.790000e-90 342.0
4 TraesCS2A01G350700 chr2B 93.298 2104 107 16 504 2592 526671442 526669358 0.000000e+00 3073.0
5 TraesCS2A01G350700 chr2B 79.796 1178 162 38 782 1928 526734593 526733461 0.000000e+00 787.0
6 TraesCS2A01G350700 chr2D 93.080 1792 84 19 413 2185 446653778 446652008 0.000000e+00 2586.0
7 TraesCS2A01G350700 chr2D 81.332 1141 144 32 800 1928 446697375 446696292 0.000000e+00 863.0
8 TraesCS2A01G350700 chr2D 81.245 1141 145 32 800 1928 446728043 446726960 0.000000e+00 857.0
9 TraesCS2A01G350700 chr2D 85.215 744 83 20 1201 1922 446932183 446932921 0.000000e+00 739.0
10 TraesCS2A01G350700 chr5A 94.471 416 23 0 1 416 675963702 675963287 2.450000e-180 641.0
11 TraesCS2A01G350700 chr5A 93.750 416 26 0 1 416 352010778 352011193 2.470000e-175 625.0
12 TraesCS2A01G350700 chr4A 94.471 416 21 2 1 416 430262662 430262249 8.830000e-180 640.0
13 TraesCS2A01G350700 chr4A 92.788 416 28 2 1 416 619293517 619293104 4.170000e-168 601.0
14 TraesCS2A01G350700 chr7A 93.961 414 25 0 1 414 545586772 545586359 6.870000e-176 627.0
15 TraesCS2A01G350700 chr6A 93.961 414 24 1 1 414 94242775 94243187 2.470000e-175 625.0
16 TraesCS2A01G350700 chr6A 79.167 408 74 9 1524 1921 398167440 398167034 3.710000e-69 272.0
17 TraesCS2A01G350700 chr3A 92.840 419 26 2 1 416 488999786 488999369 3.220000e-169 604.0
18 TraesCS2A01G350700 chr3A 93.012 415 28 1 1 414 665951554 665951968 3.220000e-169 604.0
19 TraesCS2A01G350700 chr3A 89.130 276 24 2 2589 2858 465718492 465718217 3.610000e-89 339.0
20 TraesCS2A01G350700 chr1A 92.806 417 27 3 1 416 575553644 575553230 4.170000e-168 601.0
21 TraesCS2A01G350700 chr1A 80.556 72 14 0 1115 1186 516727170 516727099 4.070000e-04 56.5
22 TraesCS2A01G350700 chr7D 88.489 278 25 5 2588 2858 282878109 282878386 2.170000e-86 329.0
23 TraesCS2A01G350700 chr6B 88.448 277 25 4 2589 2858 416677389 416677113 7.810000e-86 327.0
24 TraesCS2A01G350700 chr6B 88.645 273 24 3 2591 2856 678172365 678172093 2.810000e-85 326.0
25 TraesCS2A01G350700 chr6B 77.751 409 78 11 1524 1921 439076740 439077146 3.760000e-59 239.0
26 TraesCS2A01G350700 chr3D 88.087 277 27 2 2589 2859 12377805 12377529 1.010000e-84 324.0
27 TraesCS2A01G350700 chr7B 87.857 280 26 3 2589 2860 73180831 73180552 3.630000e-84 322.0
28 TraesCS2A01G350700 chr4B 88.087 277 25 5 2592 2860 545236840 545236564 3.630000e-84 322.0
29 TraesCS2A01G350700 chrUn 87.814 279 26 4 2589 2859 31310967 31310689 1.310000e-83 320.0
30 TraesCS2A01G350700 chr1B 80.556 72 14 0 1115 1186 567979654 567979583 4.070000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G350700 chr2A 590815875 590818796 2921 True 5397 5397 100.000 1 2922 1 chr2A.!!$R1 2921
1 TraesCS2A01G350700 chr2A 590965347 590966620 1273 True 891 891 79.776 613 1928 1 chr2A.!!$R2 1315
2 TraesCS2A01G350700 chr2A 590974069 590974813 744 True 723 723 84.667 1201 1928 1 chr2A.!!$R3 727
3 TraesCS2A01G350700 chr2B 526669358 526671442 2084 True 3073 3073 93.298 504 2592 1 chr2B.!!$R1 2088
4 TraesCS2A01G350700 chr2B 526733461 526734593 1132 True 787 787 79.796 782 1928 1 chr2B.!!$R2 1146
5 TraesCS2A01G350700 chr2D 446652008 446653778 1770 True 2586 2586 93.080 413 2185 1 chr2D.!!$R1 1772
6 TraesCS2A01G350700 chr2D 446696292 446697375 1083 True 863 863 81.332 800 1928 1 chr2D.!!$R2 1128
7 TraesCS2A01G350700 chr2D 446726960 446728043 1083 True 857 857 81.245 800 1928 1 chr2D.!!$R3 1128
8 TraesCS2A01G350700 chr2D 446932183 446932921 738 False 739 739 85.215 1201 1922 1 chr2D.!!$F1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
312 313 0.034756 AAAAATTTGCAGACCGGGGC 59.965 50.0 6.32 7.3 0.0 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2099 0.817654 CGTGCTAGACCACATCCTCA 59.182 55.0 0.0 0.0 35.47 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.352457 CGACGAGATTCGCCCGAG 60.352 66.667 7.70 0.00 45.12 4.63
40 41 2.655685 GACGAGATTCGCCCGAGC 60.656 66.667 0.00 0.00 45.12 5.03
54 55 4.115199 GAGCGGAAGGGGCATGGT 62.115 66.667 0.00 0.00 0.00 3.55
55 56 4.115199 AGCGGAAGGGGCATGGTC 62.115 66.667 0.00 0.00 0.00 4.02
57 58 3.781307 CGGAAGGGGCATGGTCGA 61.781 66.667 0.00 0.00 0.00 4.20
58 59 2.124695 GGAAGGGGCATGGTCGAC 60.125 66.667 7.13 7.13 0.00 4.20
59 60 2.124695 GAAGGGGCATGGTCGACC 60.125 66.667 28.17 28.17 0.00 4.79
60 61 2.610859 AAGGGGCATGGTCGACCT 60.611 61.111 33.39 17.38 36.82 3.85
61 62 2.595009 GAAGGGGCATGGTCGACCTC 62.595 65.000 33.39 21.60 36.82 3.85
62 63 4.530857 GGGGCATGGTCGACCTCG 62.531 72.222 33.39 24.44 41.45 4.63
82 83 2.032071 GGTGACGGGGGACAACAG 59.968 66.667 0.00 0.00 0.00 3.16
83 84 2.032071 GTGACGGGGGACAACAGG 59.968 66.667 0.00 0.00 0.00 4.00
84 85 3.246112 TGACGGGGGACAACAGGG 61.246 66.667 0.00 0.00 0.00 4.45
85 86 4.029809 GACGGGGGACAACAGGGG 62.030 72.222 0.00 0.00 0.00 4.79
88 89 3.658422 GGGGGACAACAGGGGGTC 61.658 72.222 0.00 0.00 0.00 4.46
89 90 4.029809 GGGGACAACAGGGGGTCG 62.030 72.222 0.00 0.00 34.87 4.79
90 91 3.246880 GGGACAACAGGGGGTCGT 61.247 66.667 0.00 0.00 34.87 4.34
91 92 2.346365 GGACAACAGGGGGTCGTC 59.654 66.667 0.00 0.00 34.87 4.20
92 93 2.346365 GACAACAGGGGGTCGTCC 59.654 66.667 0.00 0.00 0.00 4.79
93 94 2.446994 ACAACAGGGGGTCGTCCA 60.447 61.111 0.04 0.00 37.22 4.02
94 95 1.838073 GACAACAGGGGGTCGTCCAT 61.838 60.000 0.04 0.00 37.22 3.41
95 96 1.377202 CAACAGGGGGTCGTCCATG 60.377 63.158 0.04 3.40 43.52 3.66
96 97 2.602676 AACAGGGGGTCGTCCATGG 61.603 63.158 4.97 4.97 42.33 3.66
97 98 4.489771 CAGGGGGTCGTCCATGGC 62.490 72.222 6.96 0.96 35.19 4.40
129 130 4.168291 GGGGAAGAGCAGCCGGAG 62.168 72.222 5.05 0.00 0.00 4.63
130 131 4.847444 GGGAAGAGCAGCCGGAGC 62.847 72.222 5.05 8.78 40.32 4.70
143 144 4.785453 GGAGCTTGCGGAGTGGGG 62.785 72.222 0.00 0.00 0.00 4.96
144 145 4.785453 GAGCTTGCGGAGTGGGGG 62.785 72.222 0.00 0.00 0.00 5.40
147 148 4.659172 CTTGCGGAGTGGGGGCAA 62.659 66.667 0.00 0.00 43.73 4.52
148 149 3.944250 CTTGCGGAGTGGGGGCAAT 62.944 63.158 0.00 0.00 44.71 3.56
149 150 4.738998 TGCGGAGTGGGGGCAATG 62.739 66.667 0.00 0.00 33.01 2.82
151 152 4.047125 CGGAGTGGGGGCAATGGT 62.047 66.667 0.00 0.00 0.00 3.55
152 153 2.362889 GGAGTGGGGGCAATGGTG 60.363 66.667 0.00 0.00 0.00 4.17
153 154 2.362889 GAGTGGGGGCAATGGTGG 60.363 66.667 0.00 0.00 0.00 4.61
161 162 4.740822 GCAATGGTGGCGGAGGGT 62.741 66.667 0.00 0.00 0.00 4.34
162 163 2.751436 CAATGGTGGCGGAGGGTG 60.751 66.667 0.00 0.00 0.00 4.61
163 164 4.740822 AATGGTGGCGGAGGGTGC 62.741 66.667 0.00 0.00 0.00 5.01
197 198 3.564027 CGCGCGGAAATGTCCCTC 61.564 66.667 24.84 0.00 41.44 4.30
198 199 3.202706 GCGCGGAAATGTCCCTCC 61.203 66.667 8.83 0.00 41.44 4.30
199 200 2.513897 CGCGGAAATGTCCCTCCC 60.514 66.667 0.00 0.00 41.44 4.30
200 201 2.513897 GCGGAAATGTCCCTCCCG 60.514 66.667 0.00 0.00 41.44 5.14
201 202 2.513897 CGGAAATGTCCCTCCCGC 60.514 66.667 0.00 0.00 41.44 6.13
202 203 2.124278 GGAAATGTCCCTCCCGCC 60.124 66.667 0.00 0.00 38.08 6.13
203 204 2.674754 GAAATGTCCCTCCCGCCA 59.325 61.111 0.00 0.00 0.00 5.69
204 205 1.001393 GAAATGTCCCTCCCGCCAA 60.001 57.895 0.00 0.00 0.00 4.52
205 206 0.610785 GAAATGTCCCTCCCGCCAAA 60.611 55.000 0.00 0.00 0.00 3.28
206 207 0.041090 AAATGTCCCTCCCGCCAAAT 59.959 50.000 0.00 0.00 0.00 2.32
207 208 0.395724 AATGTCCCTCCCGCCAAATC 60.396 55.000 0.00 0.00 0.00 2.17
208 209 1.281925 ATGTCCCTCCCGCCAAATCT 61.282 55.000 0.00 0.00 0.00 2.40
209 210 1.153147 GTCCCTCCCGCCAAATCTC 60.153 63.158 0.00 0.00 0.00 2.75
210 211 2.203070 CCCTCCCGCCAAATCTCG 60.203 66.667 0.00 0.00 0.00 4.04
211 212 2.897350 CCTCCCGCCAAATCTCGC 60.897 66.667 0.00 0.00 0.00 5.03
218 219 2.588877 CCAAATCTCGCGCGGGAT 60.589 61.111 38.00 38.00 36.81 3.85
219 220 1.300620 CCAAATCTCGCGCGGGATA 60.301 57.895 42.17 20.55 33.56 2.59
220 221 1.284982 CCAAATCTCGCGCGGGATAG 61.285 60.000 42.17 34.23 33.56 2.08
221 222 1.006102 AAATCTCGCGCGGGATAGG 60.006 57.895 42.17 19.06 33.56 2.57
222 223 2.436087 AAATCTCGCGCGGGATAGGG 62.436 60.000 42.17 17.41 33.56 3.53
227 228 3.857038 GCGCGGGATAGGGGTTGA 61.857 66.667 8.83 0.00 0.00 3.18
228 229 2.421739 CGCGGGATAGGGGTTGAG 59.578 66.667 0.00 0.00 0.00 3.02
229 230 2.111251 GCGGGATAGGGGTTGAGC 59.889 66.667 0.00 0.00 0.00 4.26
230 231 2.444256 GCGGGATAGGGGTTGAGCT 61.444 63.158 0.00 0.00 0.00 4.09
231 232 1.749033 CGGGATAGGGGTTGAGCTC 59.251 63.158 6.82 6.82 0.00 4.09
232 233 1.749033 GGGATAGGGGTTGAGCTCG 59.251 63.158 9.64 0.00 0.00 5.03
233 234 1.749033 GGATAGGGGTTGAGCTCGG 59.251 63.158 9.64 0.00 0.00 4.63
234 235 1.749033 GATAGGGGTTGAGCTCGGG 59.251 63.158 9.64 0.00 0.00 5.14
235 236 1.003051 ATAGGGGTTGAGCTCGGGT 59.997 57.895 9.64 0.00 0.00 5.28
236 237 1.049289 ATAGGGGTTGAGCTCGGGTC 61.049 60.000 9.64 0.00 0.00 4.46
237 238 4.452733 GGGGTTGAGCTCGGGTCG 62.453 72.222 9.64 0.00 32.15 4.79
238 239 4.452733 GGGTTGAGCTCGGGTCGG 62.453 72.222 9.64 0.00 32.15 4.79
255 256 2.124695 GCCTCCCAGCCCGTAAAG 60.125 66.667 0.00 0.00 0.00 1.85
256 257 2.666098 GCCTCCCAGCCCGTAAAGA 61.666 63.158 0.00 0.00 0.00 2.52
257 258 1.984288 GCCTCCCAGCCCGTAAAGAT 61.984 60.000 0.00 0.00 0.00 2.40
258 259 1.420430 CCTCCCAGCCCGTAAAGATA 58.580 55.000 0.00 0.00 0.00 1.98
259 260 1.344763 CCTCCCAGCCCGTAAAGATAG 59.655 57.143 0.00 0.00 0.00 2.08
260 261 2.317040 CTCCCAGCCCGTAAAGATAGA 58.683 52.381 0.00 0.00 0.00 1.98
261 262 2.297597 CTCCCAGCCCGTAAAGATAGAG 59.702 54.545 0.00 0.00 0.00 2.43
262 263 1.344763 CCCAGCCCGTAAAGATAGAGG 59.655 57.143 0.00 0.00 0.00 3.69
263 264 2.040178 CCAGCCCGTAAAGATAGAGGT 58.960 52.381 0.00 0.00 0.00 3.85
264 265 2.434702 CCAGCCCGTAAAGATAGAGGTT 59.565 50.000 0.00 0.00 0.00 3.50
265 266 3.458189 CAGCCCGTAAAGATAGAGGTTG 58.542 50.000 0.00 0.00 0.00 3.77
266 267 2.434702 AGCCCGTAAAGATAGAGGTTGG 59.565 50.000 0.00 0.00 0.00 3.77
267 268 2.484947 GCCCGTAAAGATAGAGGTTGGG 60.485 54.545 0.00 0.00 37.19 4.12
268 269 2.104281 CCCGTAAAGATAGAGGTTGGGG 59.896 54.545 0.00 0.00 0.00 4.96
269 270 2.104281 CCGTAAAGATAGAGGTTGGGGG 59.896 54.545 0.00 0.00 0.00 5.40
270 271 3.036091 CGTAAAGATAGAGGTTGGGGGA 58.964 50.000 0.00 0.00 0.00 4.81
271 272 3.069729 CGTAAAGATAGAGGTTGGGGGAG 59.930 52.174 0.00 0.00 0.00 4.30
272 273 3.508952 AAAGATAGAGGTTGGGGGAGA 57.491 47.619 0.00 0.00 0.00 3.71
273 274 3.508952 AAGATAGAGGTTGGGGGAGAA 57.491 47.619 0.00 0.00 0.00 2.87
274 275 3.053359 AGATAGAGGTTGGGGGAGAAG 57.947 52.381 0.00 0.00 0.00 2.85
275 276 2.592512 AGATAGAGGTTGGGGGAGAAGA 59.407 50.000 0.00 0.00 0.00 2.87
276 277 3.211000 AGATAGAGGTTGGGGGAGAAGAT 59.789 47.826 0.00 0.00 0.00 2.40
277 278 2.367947 AGAGGTTGGGGGAGAAGATT 57.632 50.000 0.00 0.00 0.00 2.40
278 279 2.648838 AGAGGTTGGGGGAGAAGATTT 58.351 47.619 0.00 0.00 0.00 2.17
279 280 2.310052 AGAGGTTGGGGGAGAAGATTTG 59.690 50.000 0.00 0.00 0.00 2.32
280 281 2.041755 GAGGTTGGGGGAGAAGATTTGT 59.958 50.000 0.00 0.00 0.00 2.83
281 282 2.041755 AGGTTGGGGGAGAAGATTTGTC 59.958 50.000 0.00 0.00 0.00 3.18
282 283 2.084546 GTTGGGGGAGAAGATTTGTCG 58.915 52.381 0.00 0.00 0.00 4.35
283 284 0.035439 TGGGGGAGAAGATTTGTCGC 60.035 55.000 0.00 0.00 35.52 5.19
284 285 1.090052 GGGGGAGAAGATTTGTCGCG 61.090 60.000 0.00 0.00 36.86 5.87
285 286 1.706287 GGGGAGAAGATTTGTCGCGC 61.706 60.000 0.00 0.00 36.86 6.86
286 287 1.706287 GGGAGAAGATTTGTCGCGCC 61.706 60.000 0.00 0.00 0.00 6.53
287 288 0.741221 GGAGAAGATTTGTCGCGCCT 60.741 55.000 0.00 0.00 0.00 5.52
288 289 0.647925 GAGAAGATTTGTCGCGCCTC 59.352 55.000 0.00 0.00 0.00 4.70
289 290 1.078759 AGAAGATTTGTCGCGCCTCG 61.079 55.000 0.00 0.00 40.15 4.63
312 313 0.034756 AAAAATTTGCAGACCGGGGC 59.965 50.000 6.32 7.30 0.00 5.80
313 314 2.153547 AAAATTTGCAGACCGGGGCG 62.154 55.000 6.32 0.00 0.00 6.13
330 331 4.115199 GGGATGCGGGGTCTGCTT 62.115 66.667 0.30 0.00 0.00 3.91
331 332 2.825836 GGATGCGGGGTCTGCTTG 60.826 66.667 0.30 0.00 0.00 4.01
332 333 2.045926 GATGCGGGGTCTGCTTGT 60.046 61.111 0.30 0.00 0.00 3.16
333 334 2.360350 ATGCGGGGTCTGCTTGTG 60.360 61.111 0.30 0.00 0.00 3.33
346 347 1.000060 TGCTTGTGCAGATTTTCTGGC 60.000 47.619 6.64 2.06 44.43 4.85
347 348 1.670967 GCTTGTGCAGATTTTCTGGCC 60.671 52.381 0.00 0.00 44.43 5.36
348 349 0.968405 TTGTGCAGATTTTCTGGCCC 59.032 50.000 0.00 0.00 44.43 5.80
349 350 0.899717 TGTGCAGATTTTCTGGCCCC 60.900 55.000 0.00 0.00 44.43 5.80
350 351 1.678635 TGCAGATTTTCTGGCCCCG 60.679 57.895 0.00 0.00 44.43 5.73
351 352 1.378514 GCAGATTTTCTGGCCCCGA 60.379 57.895 0.00 0.00 44.43 5.14
352 353 1.657751 GCAGATTTTCTGGCCCCGAC 61.658 60.000 0.00 0.00 44.43 4.79
353 354 1.032114 CAGATTTTCTGGCCCCGACC 61.032 60.000 0.00 0.00 40.71 4.79
354 355 1.753078 GATTTTCTGGCCCCGACCC 60.753 63.158 0.00 0.00 0.00 4.46
355 356 3.638592 ATTTTCTGGCCCCGACCCG 62.639 63.158 0.00 0.00 0.00 5.28
362 363 4.128388 GCCCCGACCCGCAATTTG 62.128 66.667 0.00 0.00 0.00 2.32
363 364 3.448340 CCCCGACCCGCAATTTGG 61.448 66.667 0.00 0.00 0.00 3.28
364 365 4.128388 CCCGACCCGCAATTTGGC 62.128 66.667 0.00 0.00 0.00 4.52
376 377 4.493074 GCAATTTGGCGGTTATTTTACG 57.507 40.909 0.00 0.00 0.00 3.18
377 378 3.304826 GCAATTTGGCGGTTATTTTACGG 59.695 43.478 0.00 0.00 0.00 4.02
378 379 3.786516 ATTTGGCGGTTATTTTACGGG 57.213 42.857 0.00 0.00 0.00 5.28
379 380 0.810016 TTGGCGGTTATTTTACGGGC 59.190 50.000 0.00 0.00 42.02 6.13
380 381 1.031029 TGGCGGTTATTTTACGGGCC 61.031 55.000 0.00 0.00 41.32 5.80
381 382 1.352753 GCGGTTATTTTACGGGCCG 59.647 57.895 27.06 27.06 41.79 6.13
382 383 2.016171 CGGTTATTTTACGGGCCGG 58.984 57.895 31.78 12.53 36.05 6.13
383 384 1.438562 CGGTTATTTTACGGGCCGGG 61.439 60.000 31.78 3.37 36.05 5.73
384 385 1.102809 GGTTATTTTACGGGCCGGGG 61.103 60.000 31.78 2.48 0.00 5.73
385 386 1.453562 TTATTTTACGGGCCGGGGC 60.454 57.895 31.78 13.01 41.06 5.80
386 387 3.753806 TATTTTACGGGCCGGGGCG 62.754 63.158 31.78 12.18 43.06 6.13
401 402 2.127232 GCGTTTTGCGGAGTCTGC 60.127 61.111 17.47 17.47 41.69 4.26
402 403 2.607892 GCGTTTTGCGGAGTCTGCT 61.608 57.895 24.05 0.00 41.69 4.24
403 404 1.289109 GCGTTTTGCGGAGTCTGCTA 61.289 55.000 24.05 14.68 41.69 3.49
404 405 0.716108 CGTTTTGCGGAGTCTGCTAG 59.284 55.000 24.05 7.71 36.85 3.42
405 406 1.668919 CGTTTTGCGGAGTCTGCTAGA 60.669 52.381 24.05 9.92 36.85 2.43
406 407 1.996191 GTTTTGCGGAGTCTGCTAGAG 59.004 52.381 24.05 0.00 0.00 2.43
407 408 1.257743 TTTGCGGAGTCTGCTAGAGT 58.742 50.000 24.05 0.00 0.00 3.24
408 409 1.257743 TTGCGGAGTCTGCTAGAGTT 58.742 50.000 24.05 0.00 0.00 3.01
409 410 0.528017 TGCGGAGTCTGCTAGAGTTG 59.472 55.000 24.05 0.00 0.00 3.16
410 411 0.804156 GCGGAGTCTGCTAGAGTTGC 60.804 60.000 17.05 0.00 0.00 4.17
411 412 0.814457 CGGAGTCTGCTAGAGTTGCT 59.186 55.000 0.00 0.00 0.00 3.91
433 434 6.321945 TGCTCTAAATCCAAACATGCATGTAT 59.678 34.615 31.55 18.68 40.80 2.29
436 437 9.888878 CTCTAAATCCAAACATGCATGTATAAG 57.111 33.333 31.55 19.85 40.80 1.73
437 438 9.407380 TCTAAATCCAAACATGCATGTATAAGT 57.593 29.630 31.55 13.87 40.80 2.24
455 456 8.226112 TGTATAAGTTTCTTTTAGGGGGAACAA 58.774 33.333 0.00 0.00 0.00 2.83
456 457 5.864418 AAGTTTCTTTTAGGGGGAACAAC 57.136 39.130 0.00 0.00 0.00 3.32
483 485 7.694886 TGTATTAGTGATCGAACTACTGAGTG 58.305 38.462 0.00 0.00 35.52 3.51
500 502 3.818210 TGAGTGCGCAAAGAGGAAAATTA 59.182 39.130 14.00 0.00 0.00 1.40
502 504 4.737054 AGTGCGCAAAGAGGAAAATTATG 58.263 39.130 14.00 0.00 0.00 1.90
539 541 0.109735 TCGACTACTGAGTGCGCAAG 60.110 55.000 14.00 9.26 35.45 4.01
688 690 0.870307 CCATCATCCCGACGAACGAC 60.870 60.000 0.00 0.00 45.77 4.34
777 787 0.599558 TCCAAACTCTCGTGTACCGG 59.400 55.000 0.00 0.00 37.11 5.28
811 821 0.656259 TCTTGATAGTCGACGAGCCG 59.344 55.000 11.42 3.06 0.00 5.52
812 822 0.930742 CTTGATAGTCGACGAGCCGC 60.931 60.000 11.42 0.00 0.00 6.53
853 865 3.615592 CGGTCGGTTTGATCTAGTCCAAA 60.616 47.826 7.76 7.76 0.00 3.28
883 895 2.276201 CCAAAGTCGTCGGCAATGATA 58.724 47.619 0.00 0.00 0.00 2.15
918 939 0.466543 TATAAACCGCCTGCGACCAT 59.533 50.000 13.94 3.47 42.83 3.55
948 971 4.684877 TGTACACTCAGCTCGTAAACAAA 58.315 39.130 0.00 0.00 0.00 2.83
949 972 4.743151 TGTACACTCAGCTCGTAAACAAAG 59.257 41.667 0.00 0.00 0.00 2.77
950 973 2.544267 ACACTCAGCTCGTAAACAAAGC 59.456 45.455 0.00 0.00 36.27 3.51
951 974 2.543848 CACTCAGCTCGTAAACAAAGCA 59.456 45.455 7.10 0.00 38.51 3.91
952 975 2.802816 ACTCAGCTCGTAAACAAAGCAG 59.197 45.455 7.10 0.59 38.51 4.24
953 976 1.531149 TCAGCTCGTAAACAAAGCAGC 59.469 47.619 7.10 0.00 38.51 5.25
954 977 1.532868 CAGCTCGTAAACAAAGCAGCT 59.467 47.619 0.00 0.00 38.51 4.24
955 978 2.031682 CAGCTCGTAAACAAAGCAGCTT 60.032 45.455 0.21 0.21 38.51 3.74
1038 1062 3.329542 GATGCTCCCGTTCCTGGCA 62.330 63.158 0.00 0.00 37.32 4.92
1162 1186 0.608856 TACCGACGCCTACTGTGGAA 60.609 55.000 0.00 0.00 0.00 3.53
1167 1191 1.001633 GACGCCTACTGTGGAAAAGGA 59.998 52.381 0.00 0.00 0.00 3.36
1170 1194 1.745653 GCCTACTGTGGAAAAGGATGC 59.254 52.381 0.00 0.00 0.00 3.91
1176 1200 1.177401 GTGGAAAAGGATGCCAGTCC 58.823 55.000 0.00 0.00 38.62 3.85
1243 1267 2.596338 TGGAGAGCGTCGTCACCA 60.596 61.111 8.91 8.91 35.11 4.17
1469 1516 5.878133 ACCGACTAAGACGAGTTTAATCTC 58.122 41.667 3.79 3.79 0.00 2.75
1618 1669 2.037847 AAGGGGTACTACGGGCGT 59.962 61.111 0.00 0.00 0.00 5.68
1690 1741 2.031465 GGGTTCGACGGGCTCAAA 59.969 61.111 0.00 0.00 0.00 2.69
1928 1982 1.884067 GCCTCACTTGCTAGGTGCTTT 60.884 52.381 0.00 0.00 43.37 3.51
1930 1984 1.198637 CTCACTTGCTAGGTGCTTTGC 59.801 52.381 0.00 0.00 43.37 3.68
1944 2002 0.580578 CTTTGCGCCTGATCGAGATG 59.419 55.000 4.18 0.00 0.00 2.90
1960 2026 1.214673 AGATGGGCATGCAGAGAACAT 59.785 47.619 21.36 12.67 0.00 2.71
1990 2056 6.101332 ACTTATGTAGAATAAACGTTCGGCA 58.899 36.000 0.00 0.00 33.36 5.69
1995 2061 0.800012 AATAAACGTTCGGCATGCGT 59.200 45.000 12.44 0.00 40.81 5.24
2033 2099 4.279922 CCGTCCAAACAAGAAATAAAGGGT 59.720 41.667 0.00 0.00 0.00 4.34
2049 2121 0.466124 GGGTGAGGATGTGGTCTAGC 59.534 60.000 0.00 0.00 0.00 3.42
2122 2194 5.105392 TCCTCATCAACAAGCAAAAAGTGTT 60.105 36.000 0.00 0.00 35.91 3.32
2123 2195 6.096141 TCCTCATCAACAAGCAAAAAGTGTTA 59.904 34.615 0.00 0.00 33.80 2.41
2124 2196 6.198966 CCTCATCAACAAGCAAAAAGTGTTAC 59.801 38.462 0.00 0.00 33.80 2.50
2125 2197 6.862209 TCATCAACAAGCAAAAAGTGTTACT 58.138 32.000 0.00 0.00 33.80 2.24
2126 2198 6.972328 TCATCAACAAGCAAAAAGTGTTACTC 59.028 34.615 0.00 0.00 33.80 2.59
2127 2199 5.646606 TCAACAAGCAAAAAGTGTTACTCC 58.353 37.500 0.00 0.00 33.80 3.85
2171 2243 9.508642 CTCATGTCTAGGTACATCTGTATCTAA 57.491 37.037 10.66 0.00 41.96 2.10
2203 2275 3.438297 ACGAGTAATTCATGACGGAGG 57.562 47.619 0.00 0.00 0.00 4.30
2207 2279 4.738740 CGAGTAATTCATGACGGAGGTAAC 59.261 45.833 0.00 0.00 0.00 2.50
2211 2283 7.788026 AGTAATTCATGACGGAGGTAACATTA 58.212 34.615 0.00 0.00 41.41 1.90
2222 2294 6.379133 ACGGAGGTAACATTATTGAGACAGTA 59.621 38.462 0.00 0.00 41.41 2.74
2272 2344 1.534729 GAGGTTTGACATGGTCCACC 58.465 55.000 0.00 6.69 36.02 4.61
2374 2446 4.034626 TGACCCGAATAACATAACAATGCG 59.965 41.667 0.00 0.00 0.00 4.73
2406 2479 9.297037 CCTATTTTCTTTTCAATATCGGGGTAT 57.703 33.333 0.00 0.00 0.00 2.73
2506 2580 4.935808 CCGTTGTGTCTAAATTTAGAGCCT 59.064 41.667 24.92 0.00 40.23 4.58
2573 2647 3.809832 GCTGCTCGAGCCTAATTTAATCA 59.190 43.478 33.23 10.10 42.54 2.57
2584 2658 8.379457 AGCCTAATTTAATCATCCGACTTTAC 57.621 34.615 0.00 0.00 0.00 2.01
2592 2666 6.657836 AATCATCCGACTTTACGTTTAAGG 57.342 37.500 12.82 0.00 0.00 2.69
2593 2667 4.497300 TCATCCGACTTTACGTTTAAGGG 58.503 43.478 12.82 6.93 0.00 3.95
2594 2668 2.687370 TCCGACTTTACGTTTAAGGGC 58.313 47.619 12.82 0.00 0.00 5.19
2595 2669 2.036992 TCCGACTTTACGTTTAAGGGCA 59.963 45.455 12.82 0.00 0.00 5.36
2596 2670 3.004862 CCGACTTTACGTTTAAGGGCAT 58.995 45.455 12.82 0.00 0.00 4.40
2597 2671 3.181514 CCGACTTTACGTTTAAGGGCATG 60.182 47.826 12.82 0.00 0.00 4.06
2598 2672 3.434299 CGACTTTACGTTTAAGGGCATGT 59.566 43.478 12.82 0.00 0.00 3.21
2599 2673 4.626604 CGACTTTACGTTTAAGGGCATGTA 59.373 41.667 12.82 0.00 0.00 2.29
2600 2674 5.445010 CGACTTTACGTTTAAGGGCATGTAC 60.445 44.000 12.82 0.00 0.00 2.90
2601 2675 5.307204 ACTTTACGTTTAAGGGCATGTACA 58.693 37.500 0.00 0.00 0.00 2.90
2602 2676 5.764192 ACTTTACGTTTAAGGGCATGTACAA 59.236 36.000 0.00 0.00 0.00 2.41
2603 2677 6.431852 ACTTTACGTTTAAGGGCATGTACAAT 59.568 34.615 0.00 0.00 0.00 2.71
2604 2678 4.695217 ACGTTTAAGGGCATGTACAATG 57.305 40.909 0.00 0.12 0.00 2.82
2605 2679 3.442273 ACGTTTAAGGGCATGTACAATGG 59.558 43.478 0.00 0.00 0.00 3.16
2606 2680 3.442273 CGTTTAAGGGCATGTACAATGGT 59.558 43.478 0.00 0.00 0.00 3.55
2607 2681 4.674101 CGTTTAAGGGCATGTACAATGGTG 60.674 45.833 0.00 0.00 0.00 4.17
2608 2682 2.603075 AAGGGCATGTACAATGGTGT 57.397 45.000 0.00 0.00 42.09 4.16
2609 2683 2.603075 AGGGCATGTACAATGGTGTT 57.397 45.000 0.00 0.00 39.30 3.32
2610 2684 3.730215 AGGGCATGTACAATGGTGTTA 57.270 42.857 0.00 0.00 39.30 2.41
2611 2685 3.352648 AGGGCATGTACAATGGTGTTAC 58.647 45.455 0.00 0.00 39.30 2.50
2612 2686 3.085533 GGGCATGTACAATGGTGTTACA 58.914 45.455 0.00 0.00 39.30 2.41
2613 2687 3.699038 GGGCATGTACAATGGTGTTACAT 59.301 43.478 0.00 0.00 39.30 2.29
2614 2688 4.159506 GGGCATGTACAATGGTGTTACATT 59.840 41.667 0.00 0.00 41.51 2.71
2615 2689 5.358442 GGGCATGTACAATGGTGTTACATTA 59.642 40.000 0.00 0.00 38.94 1.90
2616 2690 6.127591 GGGCATGTACAATGGTGTTACATTAA 60.128 38.462 0.00 0.00 38.94 1.40
2617 2691 6.972328 GGCATGTACAATGGTGTTACATTAAG 59.028 38.462 0.00 0.00 38.94 1.85
2618 2692 7.148154 GGCATGTACAATGGTGTTACATTAAGA 60.148 37.037 0.00 0.00 38.94 2.10
2619 2693 7.910162 GCATGTACAATGGTGTTACATTAAGAG 59.090 37.037 0.00 0.00 38.94 2.85
2620 2694 8.946085 CATGTACAATGGTGTTACATTAAGAGT 58.054 33.333 0.00 0.00 38.94 3.24
2621 2695 8.317891 TGTACAATGGTGTTACATTAAGAGTG 57.682 34.615 0.00 0.00 38.94 3.51
2622 2696 6.254281 ACAATGGTGTTACATTAAGAGTGC 57.746 37.500 0.00 0.00 38.94 4.40
2623 2697 5.183140 ACAATGGTGTTACATTAAGAGTGCC 59.817 40.000 0.00 0.00 38.94 5.01
2624 2698 4.359434 TGGTGTTACATTAAGAGTGCCA 57.641 40.909 0.00 0.00 0.00 4.92
2625 2699 4.069304 TGGTGTTACATTAAGAGTGCCAC 58.931 43.478 0.00 0.00 0.00 5.01
2626 2700 3.124636 GGTGTTACATTAAGAGTGCCACG 59.875 47.826 0.00 0.00 0.00 4.94
2627 2701 3.744426 GTGTTACATTAAGAGTGCCACGT 59.256 43.478 0.00 0.00 0.00 4.49
2628 2702 4.925054 GTGTTACATTAAGAGTGCCACGTA 59.075 41.667 0.00 0.00 0.00 3.57
2629 2703 5.406175 GTGTTACATTAAGAGTGCCACGTAA 59.594 40.000 0.00 0.00 0.00 3.18
2631 2705 4.530710 ACATTAAGAGTGCCACGTAAGA 57.469 40.909 0.00 0.00 43.62 2.10
2632 2706 5.086104 ACATTAAGAGTGCCACGTAAGAT 57.914 39.130 0.00 0.00 43.62 2.40
2633 2707 6.216801 ACATTAAGAGTGCCACGTAAGATA 57.783 37.500 0.00 0.00 43.62 1.98
2634 2708 6.636705 ACATTAAGAGTGCCACGTAAGATAA 58.363 36.000 0.00 0.00 43.62 1.75
2635 2709 7.101054 ACATTAAGAGTGCCACGTAAGATAAA 58.899 34.615 0.00 0.00 43.62 1.40
2636 2710 7.769044 ACATTAAGAGTGCCACGTAAGATAAAT 59.231 33.333 0.00 0.00 43.62 1.40
2637 2711 7.534085 TTAAGAGTGCCACGTAAGATAAATG 57.466 36.000 0.00 0.00 43.62 2.32
2638 2712 5.339008 AGAGTGCCACGTAAGATAAATGA 57.661 39.130 0.00 0.00 43.62 2.57
2639 2713 5.918608 AGAGTGCCACGTAAGATAAATGAT 58.081 37.500 0.00 0.00 43.62 2.45
2640 2714 5.755375 AGAGTGCCACGTAAGATAAATGATG 59.245 40.000 0.00 0.00 43.62 3.07
2641 2715 5.670485 AGTGCCACGTAAGATAAATGATGA 58.330 37.500 0.00 0.00 43.62 2.92
2642 2716 5.755375 AGTGCCACGTAAGATAAATGATGAG 59.245 40.000 0.00 0.00 43.62 2.90
2643 2717 5.050091 GTGCCACGTAAGATAAATGATGAGG 60.050 44.000 0.00 0.00 43.62 3.86
2644 2718 5.057149 GCCACGTAAGATAAATGATGAGGT 58.943 41.667 0.00 0.00 43.62 3.85
2645 2719 5.050091 GCCACGTAAGATAAATGATGAGGTG 60.050 44.000 0.00 0.00 43.62 4.00
2646 2720 5.466728 CCACGTAAGATAAATGATGAGGTGG 59.533 44.000 0.00 0.00 43.62 4.61
2647 2721 6.280643 CACGTAAGATAAATGATGAGGTGGA 58.719 40.000 0.00 0.00 43.62 4.02
2648 2722 6.422100 CACGTAAGATAAATGATGAGGTGGAG 59.578 42.308 0.00 0.00 43.62 3.86
2649 2723 5.928839 CGTAAGATAAATGATGAGGTGGAGG 59.071 44.000 0.00 0.00 43.02 4.30
2650 2724 6.239317 CGTAAGATAAATGATGAGGTGGAGGA 60.239 42.308 0.00 0.00 43.02 3.71
2651 2725 5.822132 AGATAAATGATGAGGTGGAGGAG 57.178 43.478 0.00 0.00 0.00 3.69
2652 2726 5.471424 AGATAAATGATGAGGTGGAGGAGA 58.529 41.667 0.00 0.00 0.00 3.71
2653 2727 5.543405 AGATAAATGATGAGGTGGAGGAGAG 59.457 44.000 0.00 0.00 0.00 3.20
2654 2728 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
2655 2729 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
2656 2730 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
2657 2731 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
2658 2732 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
2659 2733 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
2660 2734 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
2661 2735 1.099689 GGTGGAGGAGAGAGAACTCG 58.900 60.000 0.00 0.00 46.64 4.18
2662 2736 1.340211 GGTGGAGGAGAGAGAACTCGA 60.340 57.143 0.00 0.00 46.64 4.04
2663 2737 2.438411 GTGGAGGAGAGAGAACTCGAA 58.562 52.381 0.00 0.00 46.64 3.71
2664 2738 2.422127 GTGGAGGAGAGAGAACTCGAAG 59.578 54.545 0.00 0.00 46.64 3.79
2665 2739 2.040545 TGGAGGAGAGAGAACTCGAAGT 59.959 50.000 0.00 0.00 46.64 3.01
2666 2740 3.086282 GGAGGAGAGAGAACTCGAAGTT 58.914 50.000 0.71 0.71 46.64 2.66
2667 2741 3.508402 GGAGGAGAGAGAACTCGAAGTTT 59.492 47.826 2.51 0.00 46.64 2.66
2668 2742 4.021807 GGAGGAGAGAGAACTCGAAGTTTT 60.022 45.833 2.51 0.00 46.64 2.43
2669 2743 4.877282 AGGAGAGAGAACTCGAAGTTTTG 58.123 43.478 2.51 0.00 46.64 2.44
2670 2744 4.342665 AGGAGAGAGAACTCGAAGTTTTGT 59.657 41.667 2.51 0.00 46.64 2.83
2671 2745 4.446051 GGAGAGAGAACTCGAAGTTTTGTG 59.554 45.833 2.51 0.00 46.64 3.33
2672 2746 5.012328 AGAGAGAACTCGAAGTTTTGTGT 57.988 39.130 2.51 0.00 46.64 3.72
2673 2747 5.420409 AGAGAGAACTCGAAGTTTTGTGTT 58.580 37.500 2.51 0.49 46.64 3.32
2674 2748 5.520649 AGAGAGAACTCGAAGTTTTGTGTTC 59.479 40.000 14.70 14.70 46.64 3.18
2676 2750 5.875359 AGAGAACTCGAAGTTTTGTGTTCTT 59.125 36.000 21.42 13.35 46.90 2.52
2677 2751 6.371825 AGAGAACTCGAAGTTTTGTGTTCTTT 59.628 34.615 21.42 16.46 46.90 2.52
2678 2752 6.909909 AGAACTCGAAGTTTTGTGTTCTTTT 58.090 32.000 17.55 3.92 45.77 2.27
2679 2753 8.036273 AGAACTCGAAGTTTTGTGTTCTTTTA 57.964 30.769 17.55 0.00 45.77 1.52
2680 2754 8.674607 AGAACTCGAAGTTTTGTGTTCTTTTAT 58.325 29.630 17.55 3.41 45.77 1.40
2681 2755 9.285770 GAACTCGAAGTTTTGTGTTCTTTTATT 57.714 29.630 15.02 0.00 38.80 1.40
2682 2756 9.634163 AACTCGAAGTTTTGTGTTCTTTTATTT 57.366 25.926 0.00 0.00 34.11 1.40
2723 2797 9.920133 GATAATCTCTTAGCACAATATGTCTCA 57.080 33.333 0.00 0.00 0.00 3.27
2724 2798 9.703892 ATAATCTCTTAGCACAATATGTCTCAC 57.296 33.333 0.00 0.00 0.00 3.51
2725 2799 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
2726 2800 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
2727 2801 6.098838 TCTCTTAGCACAATATGTCTCACCAT 59.901 38.462 0.00 0.00 0.00 3.55
2728 2802 6.051074 TCTTAGCACAATATGTCTCACCATG 58.949 40.000 0.00 0.00 0.00 3.66
2729 2803 4.226427 AGCACAATATGTCTCACCATGT 57.774 40.909 0.00 0.00 0.00 3.21
2730 2804 4.592942 AGCACAATATGTCTCACCATGTT 58.407 39.130 0.00 0.00 0.00 2.71
2731 2805 5.012239 AGCACAATATGTCTCACCATGTTT 58.988 37.500 0.00 0.00 0.00 2.83
2732 2806 5.477984 AGCACAATATGTCTCACCATGTTTT 59.522 36.000 0.00 0.00 0.00 2.43
2733 2807 6.015180 AGCACAATATGTCTCACCATGTTTTT 60.015 34.615 0.00 0.00 0.00 1.94
2734 2808 7.176515 AGCACAATATGTCTCACCATGTTTTTA 59.823 33.333 0.00 0.00 0.00 1.52
2735 2809 7.485913 GCACAATATGTCTCACCATGTTTTTAG 59.514 37.037 0.00 0.00 0.00 1.85
2736 2810 7.970061 CACAATATGTCTCACCATGTTTTTAGG 59.030 37.037 0.00 0.00 0.00 2.69
2737 2811 7.888021 ACAATATGTCTCACCATGTTTTTAGGA 59.112 33.333 0.00 0.00 0.00 2.94
2738 2812 8.739039 CAATATGTCTCACCATGTTTTTAGGAA 58.261 33.333 0.00 0.00 0.00 3.36
2739 2813 9.479549 AATATGTCTCACCATGTTTTTAGGAAT 57.520 29.630 0.00 0.00 0.00 3.01
2741 2815 7.921786 TGTCTCACCATGTTTTTAGGAATAG 57.078 36.000 0.00 0.00 0.00 1.73
2742 2816 6.374333 TGTCTCACCATGTTTTTAGGAATAGC 59.626 38.462 0.00 0.00 0.00 2.97
2743 2817 6.599638 GTCTCACCATGTTTTTAGGAATAGCT 59.400 38.462 0.00 0.00 0.00 3.32
2744 2818 7.769044 GTCTCACCATGTTTTTAGGAATAGCTA 59.231 37.037 0.00 0.00 0.00 3.32
2745 2819 7.987458 TCTCACCATGTTTTTAGGAATAGCTAG 59.013 37.037 0.00 0.00 0.00 3.42
2746 2820 7.630082 TCACCATGTTTTTAGGAATAGCTAGT 58.370 34.615 0.00 0.00 0.00 2.57
2747 2821 8.107095 TCACCATGTTTTTAGGAATAGCTAGTT 58.893 33.333 0.00 0.00 0.00 2.24
2748 2822 9.391006 CACCATGTTTTTAGGAATAGCTAGTTA 57.609 33.333 0.00 0.00 0.00 2.24
2761 2835 9.157104 GGAATAGCTAGTTATTGAAGATAAGGC 57.843 37.037 15.66 0.00 0.00 4.35
2762 2836 9.936759 GAATAGCTAGTTATTGAAGATAAGGCT 57.063 33.333 15.66 0.00 0.00 4.58
2766 2840 9.148879 AGCTAGTTATTGAAGATAAGGCTAAGA 57.851 33.333 0.00 0.00 0.00 2.10
2767 2841 9.198837 GCTAGTTATTGAAGATAAGGCTAAGAC 57.801 37.037 0.00 0.00 0.00 3.01
2770 2844 9.553064 AGTTATTGAAGATAAGGCTAAGACATG 57.447 33.333 0.00 0.00 0.00 3.21
2771 2845 9.547753 GTTATTGAAGATAAGGCTAAGACATGA 57.452 33.333 0.00 0.00 0.00 3.07
2772 2846 9.547753 TTATTGAAGATAAGGCTAAGACATGAC 57.452 33.333 0.00 0.00 0.00 3.06
2773 2847 5.918608 TGAAGATAAGGCTAAGACATGACC 58.081 41.667 0.00 0.00 0.00 4.02
2774 2848 4.965200 AGATAAGGCTAAGACATGACCC 57.035 45.455 0.00 0.00 0.00 4.46
2775 2849 4.298626 AGATAAGGCTAAGACATGACCCA 58.701 43.478 0.00 0.00 0.00 4.51
2776 2850 4.910304 AGATAAGGCTAAGACATGACCCAT 59.090 41.667 0.00 0.00 0.00 4.00
2777 2851 5.370880 AGATAAGGCTAAGACATGACCCATT 59.629 40.000 0.00 0.00 0.00 3.16
2778 2852 3.287867 AGGCTAAGACATGACCCATTG 57.712 47.619 0.00 0.00 0.00 2.82
2779 2853 2.578021 AGGCTAAGACATGACCCATTGT 59.422 45.455 0.00 0.00 0.00 2.71
2780 2854 3.780294 AGGCTAAGACATGACCCATTGTA 59.220 43.478 0.00 0.00 0.00 2.41
2781 2855 4.130118 GGCTAAGACATGACCCATTGTAG 58.870 47.826 0.00 0.00 0.00 2.74
2782 2856 4.141711 GGCTAAGACATGACCCATTGTAGA 60.142 45.833 0.00 0.00 0.00 2.59
2783 2857 4.811557 GCTAAGACATGACCCATTGTAGAC 59.188 45.833 0.00 0.00 0.00 2.59
2784 2858 3.526931 AGACATGACCCATTGTAGACG 57.473 47.619 0.00 0.00 0.00 4.18
2785 2859 2.832129 AGACATGACCCATTGTAGACGT 59.168 45.455 0.00 0.00 0.00 4.34
2786 2860 3.119101 AGACATGACCCATTGTAGACGTC 60.119 47.826 7.70 7.70 0.00 4.34
2787 2861 2.832129 ACATGACCCATTGTAGACGTCT 59.168 45.455 23.66 23.66 0.00 4.18
2788 2862 3.260884 ACATGACCCATTGTAGACGTCTT 59.739 43.478 25.44 8.09 0.00 3.01
2789 2863 4.253685 CATGACCCATTGTAGACGTCTTT 58.746 43.478 25.44 2.36 0.00 2.52
2790 2864 4.345859 TGACCCATTGTAGACGTCTTTT 57.654 40.909 25.44 1.49 0.00 2.27
2791 2865 4.710324 TGACCCATTGTAGACGTCTTTTT 58.290 39.130 25.44 1.06 0.00 1.94
2792 2866 4.513692 TGACCCATTGTAGACGTCTTTTTG 59.486 41.667 25.44 15.47 0.00 2.44
2793 2867 4.457466 ACCCATTGTAGACGTCTTTTTGT 58.543 39.130 25.44 9.37 0.00 2.83
2794 2868 4.514066 ACCCATTGTAGACGTCTTTTTGTC 59.486 41.667 25.44 8.25 35.33 3.18
2795 2869 4.513692 CCCATTGTAGACGTCTTTTTGTCA 59.486 41.667 25.44 10.62 37.58 3.58
2796 2870 5.181245 CCCATTGTAGACGTCTTTTTGTCAT 59.819 40.000 25.44 4.00 37.58 3.06
2797 2871 6.307155 CCATTGTAGACGTCTTTTTGTCATC 58.693 40.000 25.44 4.31 37.58 2.92
2798 2872 6.147821 CCATTGTAGACGTCTTTTTGTCATCT 59.852 38.462 25.44 0.00 37.58 2.90
2799 2873 6.525121 TTGTAGACGTCTTTTTGTCATCTG 57.475 37.500 25.44 0.00 37.58 2.90
2800 2874 5.597806 TGTAGACGTCTTTTTGTCATCTGT 58.402 37.500 25.44 0.00 37.58 3.41
2801 2875 6.741109 TGTAGACGTCTTTTTGTCATCTGTA 58.259 36.000 25.44 0.00 37.58 2.74
2802 2876 7.375834 TGTAGACGTCTTTTTGTCATCTGTAT 58.624 34.615 25.44 0.00 37.58 2.29
2803 2877 8.517056 TGTAGACGTCTTTTTGTCATCTGTATA 58.483 33.333 25.44 0.00 37.58 1.47
2804 2878 9.517609 GTAGACGTCTTTTTGTCATCTGTATAT 57.482 33.333 25.44 0.00 37.58 0.86
2808 2882 9.647797 ACGTCTTTTTGTCATCTGTATATTACA 57.352 29.630 0.00 0.00 37.13 2.41
2815 2889 9.612066 TTTGTCATCTGTATATTACATGCAAGA 57.388 29.630 0.00 0.00 38.15 3.02
2816 2890 8.593492 TGTCATCTGTATATTACATGCAAGAC 57.407 34.615 0.00 0.00 38.15 3.01
2817 2891 8.424133 TGTCATCTGTATATTACATGCAAGACT 58.576 33.333 0.00 0.00 38.15 3.24
2818 2892 9.265901 GTCATCTGTATATTACATGCAAGACTT 57.734 33.333 0.00 0.00 38.15 3.01
2829 2903 9.890629 ATTACATGCAAGACTTAAGATAAGTCA 57.109 29.630 24.42 10.79 46.78 3.41
2830 2904 9.719355 TTACATGCAAGACTTAAGATAAGTCAA 57.281 29.630 24.42 12.31 46.78 3.18
2831 2905 8.798859 ACATGCAAGACTTAAGATAAGTCAAT 57.201 30.769 24.42 14.29 46.78 2.57
2832 2906 8.887717 ACATGCAAGACTTAAGATAAGTCAATC 58.112 33.333 24.42 15.55 46.78 2.67
2833 2907 9.107177 CATGCAAGACTTAAGATAAGTCAATCT 57.893 33.333 24.42 7.99 46.78 2.40
2834 2908 8.709386 TGCAAGACTTAAGATAAGTCAATCTC 57.291 34.615 24.42 13.10 46.78 2.75
2835 2909 8.314021 TGCAAGACTTAAGATAAGTCAATCTCA 58.686 33.333 24.42 14.77 46.78 3.27
2836 2910 9.323985 GCAAGACTTAAGATAAGTCAATCTCAT 57.676 33.333 24.42 6.58 46.78 2.90
2841 2915 9.606631 ACTTAAGATAAGTCAATCTCATCAACC 57.393 33.333 10.09 0.00 35.10 3.77
2842 2916 9.605275 CTTAAGATAAGTCAATCTCATCAACCA 57.395 33.333 0.00 0.00 35.10 3.67
2845 2919 8.447924 AGATAAGTCAATCTCATCAACCATTG 57.552 34.615 0.00 0.00 30.09 2.82
2846 2920 8.051535 AGATAAGTCAATCTCATCAACCATTGT 58.948 33.333 0.00 0.00 30.09 2.71
2847 2921 9.330063 GATAAGTCAATCTCATCAACCATTGTA 57.670 33.333 0.00 0.00 0.00 2.41
2848 2922 6.992063 AGTCAATCTCATCAACCATTGTAC 57.008 37.500 0.00 0.00 0.00 2.90
2849 2923 6.475504 AGTCAATCTCATCAACCATTGTACA 58.524 36.000 0.00 0.00 0.00 2.90
2850 2924 7.114754 AGTCAATCTCATCAACCATTGTACAT 58.885 34.615 0.00 0.00 0.00 2.29
2851 2925 7.066645 AGTCAATCTCATCAACCATTGTACATG 59.933 37.037 0.00 0.00 0.00 3.21
2852 2926 5.762825 ATCTCATCAACCATTGTACATGC 57.237 39.130 0.00 0.00 0.00 4.06
2853 2927 3.947196 TCTCATCAACCATTGTACATGCC 59.053 43.478 0.00 0.00 0.00 4.40
2854 2928 3.023119 TCATCAACCATTGTACATGCCC 58.977 45.455 0.00 0.00 0.00 5.36
2855 2929 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
2856 2930 4.080072 TCATCAACCATTGTACATGCCCTA 60.080 41.667 0.00 0.00 0.00 3.53
2857 2931 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
2858 2932 4.269183 TCAACCATTGTACATGCCCTAAG 58.731 43.478 0.00 0.00 0.00 2.18
2859 2933 2.654863 ACCATTGTACATGCCCTAAGC 58.345 47.619 0.00 0.00 44.14 3.09
2860 2934 1.956477 CCATTGTACATGCCCTAAGCC 59.044 52.381 0.00 0.00 42.71 4.35
2861 2935 1.603802 CATTGTACATGCCCTAAGCCG 59.396 52.381 0.00 0.00 42.71 5.52
2862 2936 0.616371 TTGTACATGCCCTAAGCCGT 59.384 50.000 0.00 0.00 42.71 5.68
2863 2937 0.177141 TGTACATGCCCTAAGCCGTC 59.823 55.000 0.00 0.00 42.71 4.79
2864 2938 0.532196 GTACATGCCCTAAGCCGTCC 60.532 60.000 0.00 0.00 42.71 4.79
2865 2939 0.689745 TACATGCCCTAAGCCGTCCT 60.690 55.000 0.00 0.00 42.71 3.85
2866 2940 1.227674 CATGCCCTAAGCCGTCCTC 60.228 63.158 0.00 0.00 42.71 3.71
2867 2941 1.689233 ATGCCCTAAGCCGTCCTCA 60.689 57.895 0.00 0.00 42.71 3.86
2868 2942 1.690219 ATGCCCTAAGCCGTCCTCAG 61.690 60.000 0.00 0.00 42.71 3.35
2869 2943 3.095347 GCCCTAAGCCGTCCTCAGG 62.095 68.421 0.00 0.00 34.35 3.86
2885 2959 2.914289 GGCTGCCTGTGCCTAGAT 59.086 61.111 12.43 0.00 46.38 1.98
2886 2960 1.225704 GGCTGCCTGTGCCTAGATT 59.774 57.895 12.43 0.00 46.38 2.40
2887 2961 0.394899 GGCTGCCTGTGCCTAGATTT 60.395 55.000 12.43 0.00 46.38 2.17
2888 2962 1.134098 GGCTGCCTGTGCCTAGATTTA 60.134 52.381 12.43 0.00 46.38 1.40
2889 2963 2.487986 GGCTGCCTGTGCCTAGATTTAT 60.488 50.000 12.43 0.00 46.38 1.40
2890 2964 2.810852 GCTGCCTGTGCCTAGATTTATC 59.189 50.000 0.00 0.00 36.33 1.75
2891 2965 3.406764 CTGCCTGTGCCTAGATTTATCC 58.593 50.000 0.00 0.00 36.33 2.59
2892 2966 2.224281 TGCCTGTGCCTAGATTTATCCG 60.224 50.000 0.00 0.00 36.33 4.18
2893 2967 2.872038 GCCTGTGCCTAGATTTATCCGG 60.872 54.545 0.00 0.00 0.00 5.14
2894 2968 2.289694 CCTGTGCCTAGATTTATCCGGG 60.290 54.545 0.00 0.00 0.00 5.73
2895 2969 2.368875 CTGTGCCTAGATTTATCCGGGT 59.631 50.000 0.00 0.00 0.00 5.28
2896 2970 2.104111 TGTGCCTAGATTTATCCGGGTG 59.896 50.000 0.00 0.00 0.00 4.61
2897 2971 2.367567 GTGCCTAGATTTATCCGGGTGA 59.632 50.000 0.00 0.00 0.00 4.02
2898 2972 2.632996 TGCCTAGATTTATCCGGGTGAG 59.367 50.000 0.00 0.00 0.00 3.51
2899 2973 2.897969 GCCTAGATTTATCCGGGTGAGA 59.102 50.000 0.00 0.00 0.00 3.27
2900 2974 3.306156 GCCTAGATTTATCCGGGTGAGAC 60.306 52.174 0.00 0.00 0.00 3.36
2901 2975 3.057456 CCTAGATTTATCCGGGTGAGACG 60.057 52.174 0.00 0.00 0.00 4.18
2902 2976 1.068741 AGATTTATCCGGGTGAGACGC 59.931 52.381 0.00 0.00 0.00 5.19
2903 2977 1.068741 GATTTATCCGGGTGAGACGCT 59.931 52.381 0.00 0.00 0.00 5.07
2904 2978 1.766494 TTTATCCGGGTGAGACGCTA 58.234 50.000 0.00 0.00 0.00 4.26
2905 2979 1.027357 TTATCCGGGTGAGACGCTAC 58.973 55.000 0.00 0.00 0.00 3.58
2906 2980 0.820891 TATCCGGGTGAGACGCTACC 60.821 60.000 0.00 0.00 36.21 3.18
2907 2981 2.569218 ATCCGGGTGAGACGCTACCT 62.569 60.000 0.00 0.00 37.15 3.08
2908 2982 1.452651 CCGGGTGAGACGCTACCTA 60.453 63.158 0.00 0.00 37.15 3.08
2909 2983 1.033746 CCGGGTGAGACGCTACCTAA 61.034 60.000 0.00 0.00 37.15 2.69
2910 2984 1.030457 CGGGTGAGACGCTACCTAAT 58.970 55.000 0.00 0.00 37.15 1.73
2911 2985 1.001597 CGGGTGAGACGCTACCTAATC 60.002 57.143 0.00 0.00 37.15 1.75
2912 2986 1.340568 GGGTGAGACGCTACCTAATCC 59.659 57.143 0.00 0.00 37.15 3.01
2913 2987 2.029623 GGTGAGACGCTACCTAATCCA 58.970 52.381 0.00 0.00 34.11 3.41
2914 2988 2.628657 GGTGAGACGCTACCTAATCCAT 59.371 50.000 0.00 0.00 34.11 3.41
2915 2989 3.553096 GGTGAGACGCTACCTAATCCATG 60.553 52.174 0.00 0.00 34.11 3.66
2916 2990 2.628178 TGAGACGCTACCTAATCCATGG 59.372 50.000 4.97 4.97 0.00 3.66
2917 2991 2.891580 GAGACGCTACCTAATCCATGGA 59.108 50.000 18.88 18.88 0.00 3.41
2918 2992 2.894126 AGACGCTACCTAATCCATGGAG 59.106 50.000 21.33 8.93 0.00 3.86
2919 2993 2.891580 GACGCTACCTAATCCATGGAGA 59.108 50.000 21.33 9.74 0.00 3.71
2920 2994 3.511477 ACGCTACCTAATCCATGGAGAT 58.489 45.455 21.33 13.92 0.00 2.75
2921 2995 3.511934 ACGCTACCTAATCCATGGAGATC 59.488 47.826 21.33 2.49 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.514577 ATCTCGTCGCCGGCCAAG 62.515 66.667 23.46 11.53 33.95 3.61
14 15 4.077184 AATCTCGTCGCCGGCCAA 62.077 61.111 23.46 6.44 33.95 4.52
15 16 4.508128 GAATCTCGTCGCCGGCCA 62.508 66.667 23.46 4.67 33.95 5.36
22 23 2.352457 CTCGGGCGAATCTCGTCG 60.352 66.667 0.00 3.32 46.90 5.12
23 24 2.655685 GCTCGGGCGAATCTCGTC 60.656 66.667 0.00 0.00 44.91 4.20
37 38 4.115199 ACCATGCCCCTTCCGCTC 62.115 66.667 0.00 0.00 0.00 5.03
38 39 4.115199 GACCATGCCCCTTCCGCT 62.115 66.667 0.00 0.00 0.00 5.52
40 41 3.781307 TCGACCATGCCCCTTCCG 61.781 66.667 0.00 0.00 0.00 4.30
41 42 2.124695 GTCGACCATGCCCCTTCC 60.125 66.667 3.51 0.00 0.00 3.46
42 43 2.124695 GGTCGACCATGCCCCTTC 60.125 66.667 29.75 0.00 35.64 3.46
43 44 2.610859 AGGTCGACCATGCCCCTT 60.611 61.111 35.00 10.24 38.89 3.95
44 45 3.083997 GAGGTCGACCATGCCCCT 61.084 66.667 35.00 13.86 38.89 4.79
45 46 4.530857 CGAGGTCGACCATGCCCC 62.531 72.222 35.00 15.36 43.02 5.80
46 47 3.458163 TCGAGGTCGACCATGCCC 61.458 66.667 35.00 17.00 44.22 5.36
62 63 3.618750 TTGTCCCCCGTCACCGTC 61.619 66.667 0.00 0.00 0.00 4.79
63 64 3.932483 GTTGTCCCCCGTCACCGT 61.932 66.667 0.00 0.00 0.00 4.83
64 65 3.876589 CTGTTGTCCCCCGTCACCG 62.877 68.421 0.00 0.00 0.00 4.94
65 66 2.032071 CTGTTGTCCCCCGTCACC 59.968 66.667 0.00 0.00 0.00 4.02
66 67 2.032071 CCTGTTGTCCCCCGTCAC 59.968 66.667 0.00 0.00 0.00 3.67
67 68 3.246112 CCCTGTTGTCCCCCGTCA 61.246 66.667 0.00 0.00 0.00 4.35
68 69 4.029809 CCCCTGTTGTCCCCCGTC 62.030 72.222 0.00 0.00 0.00 4.79
71 72 3.658422 GACCCCCTGTTGTCCCCC 61.658 72.222 0.00 0.00 0.00 5.40
72 73 4.029809 CGACCCCCTGTTGTCCCC 62.030 72.222 0.00 0.00 0.00 4.81
73 74 3.246880 ACGACCCCCTGTTGTCCC 61.247 66.667 0.00 0.00 36.89 4.46
76 77 1.846124 ATGGACGACCCCCTGTTGT 60.846 57.895 0.34 0.00 44.62 3.32
77 78 1.377202 CATGGACGACCCCCTGTTG 60.377 63.158 0.34 0.00 34.81 3.33
78 79 2.602676 CCATGGACGACCCCCTGTT 61.603 63.158 5.56 0.00 34.81 3.16
79 80 3.009115 CCATGGACGACCCCCTGT 61.009 66.667 5.56 0.00 34.81 4.00
80 81 4.489771 GCCATGGACGACCCCCTG 62.490 72.222 18.40 0.00 34.81 4.45
112 113 4.168291 CTCCGGCTGCTCTTCCCC 62.168 72.222 0.00 0.00 0.00 4.81
113 114 4.847444 GCTCCGGCTGCTCTTCCC 62.847 72.222 11.24 0.00 35.22 3.97
126 127 4.785453 CCCCACTCCGCAAGCTCC 62.785 72.222 0.00 0.00 0.00 4.70
127 128 4.785453 CCCCCACTCCGCAAGCTC 62.785 72.222 0.00 0.00 0.00 4.09
130 131 3.944250 ATTGCCCCCACTCCGCAAG 62.944 63.158 0.00 0.00 44.99 4.01
131 132 3.978193 ATTGCCCCCACTCCGCAA 61.978 61.111 0.00 0.00 45.77 4.85
132 133 4.738998 CATTGCCCCCACTCCGCA 62.739 66.667 0.00 0.00 0.00 5.69
134 135 4.047125 ACCATTGCCCCCACTCCG 62.047 66.667 0.00 0.00 0.00 4.63
135 136 2.362889 CACCATTGCCCCCACTCC 60.363 66.667 0.00 0.00 0.00 3.85
136 137 2.362889 CCACCATTGCCCCCACTC 60.363 66.667 0.00 0.00 0.00 3.51
137 138 4.702274 GCCACCATTGCCCCCACT 62.702 66.667 0.00 0.00 0.00 4.00
144 145 4.740822 ACCCTCCGCCACCATTGC 62.741 66.667 0.00 0.00 0.00 3.56
145 146 2.751436 CACCCTCCGCCACCATTG 60.751 66.667 0.00 0.00 0.00 2.82
146 147 4.740822 GCACCCTCCGCCACCATT 62.741 66.667 0.00 0.00 0.00 3.16
159 160 4.821589 CTTCCCGCTCTCCGCACC 62.822 72.222 0.00 0.00 39.08 5.01
160 161 4.821589 CCTTCCCGCTCTCCGCAC 62.822 72.222 0.00 0.00 39.08 5.34
180 181 3.564027 GAGGGACATTTCCGCGCG 61.564 66.667 25.67 25.67 43.94 6.86
181 182 3.202706 GGAGGGACATTTCCGCGC 61.203 66.667 0.00 0.00 43.94 6.86
182 183 2.513897 GGGAGGGACATTTCCGCG 60.514 66.667 0.00 0.00 43.94 6.46
183 184 2.513897 CGGGAGGGACATTTCCGC 60.514 66.667 0.00 0.00 43.94 5.54
184 185 2.513897 GCGGGAGGGACATTTCCG 60.514 66.667 0.00 0.00 43.94 4.30
185 186 2.124278 GGCGGGAGGGACATTTCC 60.124 66.667 0.00 0.00 41.95 3.13
186 187 0.610785 TTTGGCGGGAGGGACATTTC 60.611 55.000 0.00 0.00 0.00 2.17
187 188 0.041090 ATTTGGCGGGAGGGACATTT 59.959 50.000 0.00 0.00 0.00 2.32
188 189 0.395724 GATTTGGCGGGAGGGACATT 60.396 55.000 0.00 0.00 0.00 2.71
189 190 1.227383 GATTTGGCGGGAGGGACAT 59.773 57.895 0.00 0.00 0.00 3.06
190 191 1.910580 GAGATTTGGCGGGAGGGACA 61.911 60.000 0.00 0.00 0.00 4.02
191 192 1.153147 GAGATTTGGCGGGAGGGAC 60.153 63.158 0.00 0.00 0.00 4.46
192 193 2.731571 CGAGATTTGGCGGGAGGGA 61.732 63.158 0.00 0.00 0.00 4.20
193 194 2.203070 CGAGATTTGGCGGGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
194 195 2.897350 GCGAGATTTGGCGGGAGG 60.897 66.667 0.00 0.00 0.00 4.30
195 196 3.264897 CGCGAGATTTGGCGGGAG 61.265 66.667 0.00 0.00 46.10 4.30
201 202 1.284982 CTATCCCGCGCGAGATTTGG 61.285 60.000 31.40 22.06 0.00 3.28
202 203 1.284982 CCTATCCCGCGCGAGATTTG 61.285 60.000 31.40 22.42 0.00 2.32
203 204 1.006102 CCTATCCCGCGCGAGATTT 60.006 57.895 31.40 12.58 0.00 2.17
204 205 2.651361 CCTATCCCGCGCGAGATT 59.349 61.111 31.40 15.65 0.00 2.40
205 206 3.374402 CCCTATCCCGCGCGAGAT 61.374 66.667 34.63 31.69 0.00 2.75
210 211 3.809374 CTCAACCCCTATCCCGCGC 62.809 68.421 0.00 0.00 0.00 6.86
211 212 2.421739 CTCAACCCCTATCCCGCG 59.578 66.667 0.00 0.00 0.00 6.46
212 213 2.111251 GCTCAACCCCTATCCCGC 59.889 66.667 0.00 0.00 0.00 6.13
213 214 1.749033 GAGCTCAACCCCTATCCCG 59.251 63.158 9.40 0.00 0.00 5.14
214 215 1.749033 CGAGCTCAACCCCTATCCC 59.251 63.158 15.40 0.00 0.00 3.85
215 216 1.749033 CCGAGCTCAACCCCTATCC 59.251 63.158 15.40 0.00 0.00 2.59
216 217 1.049289 ACCCGAGCTCAACCCCTATC 61.049 60.000 15.40 0.00 0.00 2.08
217 218 1.003051 ACCCGAGCTCAACCCCTAT 59.997 57.895 15.40 0.00 0.00 2.57
218 219 1.684734 GACCCGAGCTCAACCCCTA 60.685 63.158 15.40 0.00 0.00 3.53
219 220 3.003763 GACCCGAGCTCAACCCCT 61.004 66.667 15.40 0.00 0.00 4.79
220 221 4.452733 CGACCCGAGCTCAACCCC 62.453 72.222 15.40 0.00 0.00 4.95
221 222 4.452733 CCGACCCGAGCTCAACCC 62.453 72.222 15.40 0.00 0.00 4.11
238 239 1.984288 ATCTTTACGGGCTGGGAGGC 61.984 60.000 0.00 0.00 40.51 4.70
239 240 1.344763 CTATCTTTACGGGCTGGGAGG 59.655 57.143 0.00 0.00 0.00 4.30
240 241 2.297597 CTCTATCTTTACGGGCTGGGAG 59.702 54.545 0.00 0.00 0.00 4.30
241 242 2.317040 CTCTATCTTTACGGGCTGGGA 58.683 52.381 0.00 0.00 0.00 4.37
242 243 1.344763 CCTCTATCTTTACGGGCTGGG 59.655 57.143 0.00 0.00 0.00 4.45
243 244 2.040178 ACCTCTATCTTTACGGGCTGG 58.960 52.381 0.00 0.00 0.00 4.85
244 245 3.458189 CAACCTCTATCTTTACGGGCTG 58.542 50.000 0.00 0.00 0.00 4.85
245 246 2.434702 CCAACCTCTATCTTTACGGGCT 59.565 50.000 0.00 0.00 0.00 5.19
246 247 2.484947 CCCAACCTCTATCTTTACGGGC 60.485 54.545 0.00 0.00 0.00 6.13
247 248 2.104281 CCCCAACCTCTATCTTTACGGG 59.896 54.545 0.00 0.00 0.00 5.28
248 249 2.104281 CCCCCAACCTCTATCTTTACGG 59.896 54.545 0.00 0.00 0.00 4.02
249 250 3.036091 TCCCCCAACCTCTATCTTTACG 58.964 50.000 0.00 0.00 0.00 3.18
250 251 4.296056 TCTCCCCCAACCTCTATCTTTAC 58.704 47.826 0.00 0.00 0.00 2.01
251 252 4.637288 TCTCCCCCAACCTCTATCTTTA 57.363 45.455 0.00 0.00 0.00 1.85
252 253 3.508952 TCTCCCCCAACCTCTATCTTT 57.491 47.619 0.00 0.00 0.00 2.52
253 254 3.014110 TCTTCTCCCCCAACCTCTATCTT 59.986 47.826 0.00 0.00 0.00 2.40
254 255 2.592512 TCTTCTCCCCCAACCTCTATCT 59.407 50.000 0.00 0.00 0.00 1.98
255 256 3.047695 TCTTCTCCCCCAACCTCTATC 57.952 52.381 0.00 0.00 0.00 2.08
256 257 3.734344 ATCTTCTCCCCCAACCTCTAT 57.266 47.619 0.00 0.00 0.00 1.98
257 258 3.508952 AATCTTCTCCCCCAACCTCTA 57.491 47.619 0.00 0.00 0.00 2.43
258 259 2.310052 CAAATCTTCTCCCCCAACCTCT 59.690 50.000 0.00 0.00 0.00 3.69
259 260 2.041755 ACAAATCTTCTCCCCCAACCTC 59.958 50.000 0.00 0.00 0.00 3.85
260 261 2.041755 GACAAATCTTCTCCCCCAACCT 59.958 50.000 0.00 0.00 0.00 3.50
261 262 2.447443 GACAAATCTTCTCCCCCAACC 58.553 52.381 0.00 0.00 0.00 3.77
262 263 2.084546 CGACAAATCTTCTCCCCCAAC 58.915 52.381 0.00 0.00 0.00 3.77
263 264 1.613255 GCGACAAATCTTCTCCCCCAA 60.613 52.381 0.00 0.00 0.00 4.12
264 265 0.035439 GCGACAAATCTTCTCCCCCA 60.035 55.000 0.00 0.00 0.00 4.96
265 266 1.090052 CGCGACAAATCTTCTCCCCC 61.090 60.000 0.00 0.00 0.00 5.40
266 267 1.706287 GCGCGACAAATCTTCTCCCC 61.706 60.000 12.10 0.00 0.00 4.81
267 268 1.706287 GGCGCGACAAATCTTCTCCC 61.706 60.000 12.10 0.00 0.00 4.30
268 269 0.741221 AGGCGCGACAAATCTTCTCC 60.741 55.000 17.71 0.00 0.00 3.71
269 270 0.647925 GAGGCGCGACAAATCTTCTC 59.352 55.000 17.71 0.00 0.00 2.87
270 271 1.078759 CGAGGCGCGACAAATCTTCT 61.079 55.000 17.71 0.00 44.57 2.85
271 272 1.345176 CGAGGCGCGACAAATCTTC 59.655 57.895 17.71 0.00 44.57 2.87
272 273 2.740714 GCGAGGCGCGACAAATCTT 61.741 57.895 17.71 0.00 44.55 2.40
273 274 3.188786 GCGAGGCGCGACAAATCT 61.189 61.111 17.71 0.00 44.55 2.40
293 294 0.034756 GCCCCGGTCTGCAAATTTTT 59.965 50.000 0.00 0.00 0.00 1.94
294 295 1.671166 GCCCCGGTCTGCAAATTTT 59.329 52.632 0.00 0.00 0.00 1.82
295 296 2.635443 CGCCCCGGTCTGCAAATTT 61.635 57.895 0.00 0.00 0.00 1.82
296 297 3.061848 CGCCCCGGTCTGCAAATT 61.062 61.111 0.00 0.00 0.00 1.82
313 314 4.115199 AAGCAGACCCCGCATCCC 62.115 66.667 0.00 0.00 0.00 3.85
314 315 2.825836 CAAGCAGACCCCGCATCC 60.826 66.667 0.00 0.00 0.00 3.51
315 316 2.045926 ACAAGCAGACCCCGCATC 60.046 61.111 0.00 0.00 0.00 3.91
316 317 2.360350 CACAAGCAGACCCCGCAT 60.360 61.111 0.00 0.00 0.00 4.73
327 328 1.670967 GGCCAGAAAATCTGCACAAGC 60.671 52.381 0.00 0.28 42.98 4.01
328 329 1.067354 GGGCCAGAAAATCTGCACAAG 60.067 52.381 4.39 0.00 42.98 3.16
329 330 0.968405 GGGCCAGAAAATCTGCACAA 59.032 50.000 4.39 0.00 42.98 3.33
330 331 0.899717 GGGGCCAGAAAATCTGCACA 60.900 55.000 4.39 0.00 42.98 4.57
331 332 1.893062 GGGGCCAGAAAATCTGCAC 59.107 57.895 4.39 0.00 42.98 4.57
332 333 1.678635 CGGGGCCAGAAAATCTGCA 60.679 57.895 4.39 0.00 42.98 4.41
333 334 1.378514 TCGGGGCCAGAAAATCTGC 60.379 57.895 4.39 0.00 42.98 4.26
334 335 1.032114 GGTCGGGGCCAGAAAATCTG 61.032 60.000 8.28 0.32 43.91 2.90
335 336 1.303282 GGTCGGGGCCAGAAAATCT 59.697 57.895 8.28 0.00 0.00 2.40
336 337 1.753078 GGGTCGGGGCCAGAAAATC 60.753 63.158 8.28 0.00 0.00 2.17
337 338 2.359011 GGGTCGGGGCCAGAAAAT 59.641 61.111 8.28 0.00 0.00 1.82
338 339 4.338710 CGGGTCGGGGCCAGAAAA 62.339 66.667 8.28 0.00 0.00 2.29
345 346 4.128388 CAAATTGCGGGTCGGGGC 62.128 66.667 0.00 0.00 0.00 5.80
346 347 3.448340 CCAAATTGCGGGTCGGGG 61.448 66.667 0.00 0.00 0.00 5.73
347 348 4.128388 GCCAAATTGCGGGTCGGG 62.128 66.667 0.00 0.00 0.00 5.14
355 356 3.304826 CCGTAAAATAACCGCCAAATTGC 59.695 43.478 0.00 0.00 0.00 3.56
356 357 3.860536 CCCGTAAAATAACCGCCAAATTG 59.139 43.478 0.00 0.00 0.00 2.32
357 358 3.676598 GCCCGTAAAATAACCGCCAAATT 60.677 43.478 0.00 0.00 0.00 1.82
358 359 2.159212 GCCCGTAAAATAACCGCCAAAT 60.159 45.455 0.00 0.00 0.00 2.32
359 360 1.201880 GCCCGTAAAATAACCGCCAAA 59.798 47.619 0.00 0.00 0.00 3.28
360 361 0.810016 GCCCGTAAAATAACCGCCAA 59.190 50.000 0.00 0.00 0.00 4.52
361 362 1.031029 GGCCCGTAAAATAACCGCCA 61.031 55.000 0.00 0.00 33.50 5.69
362 363 1.729276 GGCCCGTAAAATAACCGCC 59.271 57.895 0.00 0.00 0.00 6.13
363 364 1.352753 CGGCCCGTAAAATAACCGC 59.647 57.895 0.00 0.00 33.46 5.68
364 365 1.438562 CCCGGCCCGTAAAATAACCG 61.439 60.000 0.85 0.00 40.30 4.44
365 366 1.102809 CCCCGGCCCGTAAAATAACC 61.103 60.000 0.85 0.00 0.00 2.85
366 367 1.727511 GCCCCGGCCCGTAAAATAAC 61.728 60.000 0.85 0.00 34.56 1.89
367 368 1.453562 GCCCCGGCCCGTAAAATAA 60.454 57.895 0.85 0.00 34.56 1.40
368 369 2.192711 GCCCCGGCCCGTAAAATA 59.807 61.111 0.85 0.00 34.56 1.40
381 382 3.733960 GACTCCGCAAAACGCCCC 61.734 66.667 0.00 0.00 41.76 5.80
382 383 2.668550 AGACTCCGCAAAACGCCC 60.669 61.111 0.00 0.00 41.76 6.13
383 384 2.556287 CAGACTCCGCAAAACGCC 59.444 61.111 0.00 0.00 41.76 5.68
384 385 1.289109 TAGCAGACTCCGCAAAACGC 61.289 55.000 0.00 0.00 41.76 4.84
385 386 0.716108 CTAGCAGACTCCGCAAAACG 59.284 55.000 0.00 0.00 43.15 3.60
386 387 1.996191 CTCTAGCAGACTCCGCAAAAC 59.004 52.381 0.00 0.00 0.00 2.43
387 388 1.618837 ACTCTAGCAGACTCCGCAAAA 59.381 47.619 0.00 0.00 0.00 2.44
388 389 1.257743 ACTCTAGCAGACTCCGCAAA 58.742 50.000 0.00 0.00 0.00 3.68
389 390 1.067565 CAACTCTAGCAGACTCCGCAA 60.068 52.381 0.00 0.00 0.00 4.85
390 391 0.528017 CAACTCTAGCAGACTCCGCA 59.472 55.000 0.00 0.00 0.00 5.69
391 392 0.804156 GCAACTCTAGCAGACTCCGC 60.804 60.000 0.00 0.00 0.00 5.54
392 393 0.814457 AGCAACTCTAGCAGACTCCG 59.186 55.000 0.00 0.00 0.00 4.63
393 394 2.099405 AGAGCAACTCTAGCAGACTCC 58.901 52.381 0.00 0.00 39.28 3.85
394 395 4.974368 TTAGAGCAACTCTAGCAGACTC 57.026 45.455 4.64 0.00 42.92 3.36
395 396 5.163457 GGATTTAGAGCAACTCTAGCAGACT 60.163 44.000 4.64 0.00 42.92 3.24
396 397 5.047188 GGATTTAGAGCAACTCTAGCAGAC 58.953 45.833 4.64 0.00 42.92 3.51
397 398 4.711846 TGGATTTAGAGCAACTCTAGCAGA 59.288 41.667 4.64 0.00 42.92 4.26
398 399 5.016051 TGGATTTAGAGCAACTCTAGCAG 57.984 43.478 4.64 0.00 42.92 4.24
399 400 5.420725 TTGGATTTAGAGCAACTCTAGCA 57.579 39.130 4.64 0.00 42.92 3.49
400 401 5.643777 TGTTTGGATTTAGAGCAACTCTAGC 59.356 40.000 4.64 0.25 42.92 3.42
401 402 7.678218 GCATGTTTGGATTTAGAGCAACTCTAG 60.678 40.741 4.64 0.00 42.92 2.43
402 403 6.094048 GCATGTTTGGATTTAGAGCAACTCTA 59.906 38.462 0.16 0.16 41.50 2.43
403 404 5.105997 GCATGTTTGGATTTAGAGCAACTCT 60.106 40.000 2.23 2.23 43.83 3.24
404 405 5.098211 GCATGTTTGGATTTAGAGCAACTC 58.902 41.667 0.00 0.00 0.00 3.01
405 406 4.523943 TGCATGTTTGGATTTAGAGCAACT 59.476 37.500 0.00 0.00 0.00 3.16
406 407 4.808558 TGCATGTTTGGATTTAGAGCAAC 58.191 39.130 0.00 0.00 0.00 4.17
407 408 5.047164 ACATGCATGTTTGGATTTAGAGCAA 60.047 36.000 26.61 0.00 37.90 3.91
408 409 4.463539 ACATGCATGTTTGGATTTAGAGCA 59.536 37.500 26.61 0.00 37.90 4.26
409 410 5.002464 ACATGCATGTTTGGATTTAGAGC 57.998 39.130 26.61 0.00 37.90 4.09
410 411 9.888878 CTTATACATGCATGTTTGGATTTAGAG 57.111 33.333 35.45 13.76 41.97 2.43
411 412 9.407380 ACTTATACATGCATGTTTGGATTTAGA 57.593 29.630 35.45 15.24 41.97 2.10
433 434 6.433441 TGTTGTTCCCCCTAAAAGAAACTTA 58.567 36.000 0.00 0.00 0.00 2.24
436 437 5.069914 ACATGTTGTTCCCCCTAAAAGAAAC 59.930 40.000 0.00 0.00 0.00 2.78
437 438 5.212745 ACATGTTGTTCCCCCTAAAAGAAA 58.787 37.500 0.00 0.00 0.00 2.52
455 456 8.221965 TCAGTAGTTCGATCACTAATACATGT 57.778 34.615 2.69 2.69 30.86 3.21
456 457 8.346300 ACTCAGTAGTTCGATCACTAATACATG 58.654 37.037 0.00 0.00 30.86 3.21
483 485 3.510719 TGCATAATTTTCCTCTTTGCGC 58.489 40.909 0.00 0.00 0.00 6.09
500 502 5.121298 GTCGATCAGTTATACATGCATGCAT 59.879 40.000 27.46 27.46 37.08 3.96
502 504 4.687948 AGTCGATCAGTTATACATGCATGC 59.312 41.667 26.53 11.82 0.00 4.06
539 541 2.489722 GCTCAGTGGTCAATTTTCCTCC 59.510 50.000 0.00 0.00 0.00 4.30
688 690 1.339610 TGGAAGTTTGCGACCAATTGG 59.660 47.619 23.31 23.31 42.17 3.16
777 787 3.609103 TCAAGACTTTTCTTTGCTCGC 57.391 42.857 0.00 0.00 40.34 5.03
811 821 1.225745 CGGTCAAAGAATCACGCGC 60.226 57.895 5.73 0.00 0.00 6.86
812 822 0.093026 GTCGGTCAAAGAATCACGCG 59.907 55.000 3.53 3.53 0.00 6.01
853 865 1.597027 CGACTTTGGGCGTCAAGGT 60.597 57.895 7.78 7.78 46.40 3.50
883 895 4.038883 GGTTTATATAGGCAGTGGACGTCT 59.961 45.833 16.46 0.00 0.00 4.18
918 939 1.625315 AGCTGAGTGTACATGGCAAGA 59.375 47.619 0.00 0.00 0.00 3.02
950 973 0.723981 GTTCCGCTCTAGCAAAGCTG 59.276 55.000 1.04 0.00 40.10 4.24
951 974 0.321671 TGTTCCGCTCTAGCAAAGCT 59.678 50.000 2.44 0.00 43.41 3.74
952 975 1.129437 CTTGTTCCGCTCTAGCAAAGC 59.871 52.381 2.44 0.00 42.21 3.51
953 976 2.417719 ACTTGTTCCGCTCTAGCAAAG 58.582 47.619 2.44 0.87 42.21 2.77
954 977 2.543777 ACTTGTTCCGCTCTAGCAAA 57.456 45.000 2.44 0.00 42.21 3.68
955 978 2.543777 AACTTGTTCCGCTCTAGCAA 57.456 45.000 2.44 0.00 42.21 3.91
1038 1062 1.000019 TAGTGCTGCTACCCCGAGT 60.000 57.895 0.00 0.00 0.00 4.18
1475 1522 3.149981 GCCAGCTTAATTATGGAGGACC 58.850 50.000 7.63 0.00 36.09 4.46
1690 1741 2.434774 GCCACCTTCTCCGGGTTT 59.565 61.111 0.00 0.00 34.44 3.27
1726 1777 3.494336 CAGAGCGCCGCCTTGAAG 61.494 66.667 4.98 0.00 0.00 3.02
1928 1982 2.418777 CCATCTCGATCAGGCGCA 59.581 61.111 10.83 0.00 0.00 6.09
1930 1984 2.356793 GCCCATCTCGATCAGGCG 60.357 66.667 0.00 0.00 33.18 5.52
1960 2026 8.487313 AACGTTTATTCTACATAAGTCATGCA 57.513 30.769 0.00 0.00 38.29 3.96
1966 2032 6.101332 TGCCGAACGTTTATTCTACATAAGT 58.899 36.000 0.46 0.00 0.00 2.24
2006 2072 6.294286 CCTTTATTTCTTGTTTGGACGGCTTA 60.294 38.462 0.00 0.00 0.00 3.09
2033 2099 0.817654 CGTGCTAGACCACATCCTCA 59.182 55.000 0.00 0.00 35.47 3.86
2049 2121 2.002586 CTGCAAGGATCTTGGTACGTG 58.997 52.381 0.00 0.00 0.00 4.49
2078 2150 3.428316 GGAAAAGGAGTAGAGCTCGTGAG 60.428 52.174 8.37 0.00 45.03 3.51
2094 2166 6.536224 ACTTTTTGCTTGTTGATGAGGAAAAG 59.464 34.615 0.00 0.00 41.81 2.27
2187 2259 6.920569 AATGTTACCTCCGTCATGAATTAC 57.079 37.500 0.00 0.00 0.00 1.89
2195 2267 5.186215 TGTCTCAATAATGTTACCTCCGTCA 59.814 40.000 0.00 0.00 0.00 4.35
2245 2317 1.811965 CATGTCAAACCTCGCCAATGA 59.188 47.619 0.00 0.00 0.00 2.57
2319 2391 2.174349 CGAGCTTCAGTTTGGCGC 59.826 61.111 0.00 0.00 0.00 6.53
2321 2393 1.230635 TGCTCGAGCTTCAGTTTGGC 61.231 55.000 35.27 8.43 42.66 4.52
2453 2527 6.072728 GCCCAAAAGCCAAAATACCTAAAAAG 60.073 38.462 0.00 0.00 0.00 2.27
2464 2538 1.134250 GGTCAAGCCCAAAAGCCAAAA 60.134 47.619 0.00 0.00 0.00 2.44
2506 2580 6.174720 AGTCGGATGATTAAATTAGGCTCA 57.825 37.500 0.00 0.00 0.00 4.26
2553 2627 4.997395 GGATGATTAAATTAGGCTCGAGCA 59.003 41.667 36.27 18.82 44.36 4.26
2556 2630 5.010719 AGTCGGATGATTAAATTAGGCTCGA 59.989 40.000 0.00 0.00 0.00 4.04
2557 2631 5.230942 AGTCGGATGATTAAATTAGGCTCG 58.769 41.667 0.00 0.00 0.00 5.03
2567 2641 7.278424 CCCTTAAACGTAAAGTCGGATGATTAA 59.722 37.037 9.10 0.00 34.94 1.40
2573 2647 3.264947 GCCCTTAAACGTAAAGTCGGAT 58.735 45.455 9.10 0.00 34.94 4.18
2584 2658 3.442273 ACCATTGTACATGCCCTTAAACG 59.558 43.478 0.00 0.00 0.00 3.60
2592 2666 4.981806 ATGTAACACCATTGTACATGCC 57.018 40.909 0.00 0.00 33.55 4.40
2593 2667 7.757526 TCTTAATGTAACACCATTGTACATGC 58.242 34.615 0.00 0.00 35.85 4.06
2594 2668 8.946085 ACTCTTAATGTAACACCATTGTACATG 58.054 33.333 0.00 0.00 35.85 3.21
2595 2669 8.946085 CACTCTTAATGTAACACCATTGTACAT 58.054 33.333 0.00 0.00 35.85 2.29
2596 2670 7.094975 GCACTCTTAATGTAACACCATTGTACA 60.095 37.037 0.00 0.00 35.85 2.90
2597 2671 7.241376 GCACTCTTAATGTAACACCATTGTAC 58.759 38.462 0.00 0.00 35.85 2.90
2598 2672 6.373216 GGCACTCTTAATGTAACACCATTGTA 59.627 38.462 0.00 0.00 35.85 2.41
2599 2673 5.183140 GGCACTCTTAATGTAACACCATTGT 59.817 40.000 0.00 0.00 35.85 2.71
2600 2674 5.182950 TGGCACTCTTAATGTAACACCATTG 59.817 40.000 0.00 0.00 35.85 2.82
2601 2675 5.183140 GTGGCACTCTTAATGTAACACCATT 59.817 40.000 11.13 0.00 38.54 3.16
2602 2676 4.700213 GTGGCACTCTTAATGTAACACCAT 59.300 41.667 11.13 0.00 0.00 3.55
2603 2677 4.069304 GTGGCACTCTTAATGTAACACCA 58.931 43.478 11.13 0.00 0.00 4.17
2604 2678 3.124636 CGTGGCACTCTTAATGTAACACC 59.875 47.826 16.72 0.00 0.00 4.16
2605 2679 3.744426 ACGTGGCACTCTTAATGTAACAC 59.256 43.478 16.72 0.00 0.00 3.32
2606 2680 3.997762 ACGTGGCACTCTTAATGTAACA 58.002 40.909 16.72 0.00 0.00 2.41
2607 2681 5.865552 TCTTACGTGGCACTCTTAATGTAAC 59.134 40.000 16.72 0.00 0.00 2.50
2608 2682 6.028146 TCTTACGTGGCACTCTTAATGTAA 57.972 37.500 16.72 12.80 0.00 2.41
2609 2683 5.648178 TCTTACGTGGCACTCTTAATGTA 57.352 39.130 16.72 5.66 0.00 2.29
2610 2684 4.530710 TCTTACGTGGCACTCTTAATGT 57.469 40.909 16.72 6.69 0.00 2.71
2611 2685 7.534085 TTTATCTTACGTGGCACTCTTAATG 57.466 36.000 16.72 0.14 0.00 1.90
2612 2686 7.985184 TCATTTATCTTACGTGGCACTCTTAAT 59.015 33.333 16.72 6.50 0.00 1.40
2613 2687 7.324935 TCATTTATCTTACGTGGCACTCTTAA 58.675 34.615 16.72 9.17 0.00 1.85
2614 2688 6.869695 TCATTTATCTTACGTGGCACTCTTA 58.130 36.000 16.72 1.21 0.00 2.10
2615 2689 5.730550 TCATTTATCTTACGTGGCACTCTT 58.269 37.500 16.72 2.24 0.00 2.85
2616 2690 5.339008 TCATTTATCTTACGTGGCACTCT 57.661 39.130 16.72 2.90 0.00 3.24
2617 2691 5.753438 TCATCATTTATCTTACGTGGCACTC 59.247 40.000 16.72 0.00 0.00 3.51
2618 2692 5.670485 TCATCATTTATCTTACGTGGCACT 58.330 37.500 16.72 5.47 0.00 4.40
2619 2693 5.050091 CCTCATCATTTATCTTACGTGGCAC 60.050 44.000 7.79 7.79 0.00 5.01
2620 2694 5.056480 CCTCATCATTTATCTTACGTGGCA 58.944 41.667 0.00 0.00 0.00 4.92
2621 2695 5.050091 CACCTCATCATTTATCTTACGTGGC 60.050 44.000 0.00 0.00 0.00 5.01
2622 2696 5.466728 CCACCTCATCATTTATCTTACGTGG 59.533 44.000 0.00 0.00 0.00 4.94
2623 2697 6.280643 TCCACCTCATCATTTATCTTACGTG 58.719 40.000 0.00 0.00 0.00 4.49
2624 2698 6.463049 CCTCCACCTCATCATTTATCTTACGT 60.463 42.308 0.00 0.00 0.00 3.57
2625 2699 5.928839 CCTCCACCTCATCATTTATCTTACG 59.071 44.000 0.00 0.00 0.00 3.18
2626 2700 7.015682 TCTCCTCCACCTCATCATTTATCTTAC 59.984 40.741 0.00 0.00 0.00 2.34
2627 2701 7.075797 TCTCCTCCACCTCATCATTTATCTTA 58.924 38.462 0.00 0.00 0.00 2.10
2628 2702 5.907662 TCTCCTCCACCTCATCATTTATCTT 59.092 40.000 0.00 0.00 0.00 2.40
2629 2703 5.471424 TCTCCTCCACCTCATCATTTATCT 58.529 41.667 0.00 0.00 0.00 1.98
2630 2704 5.541868 TCTCTCCTCCACCTCATCATTTATC 59.458 44.000 0.00 0.00 0.00 1.75
2631 2705 5.471424 TCTCTCCTCCACCTCATCATTTAT 58.529 41.667 0.00 0.00 0.00 1.40
2632 2706 4.883759 TCTCTCCTCCACCTCATCATTTA 58.116 43.478 0.00 0.00 0.00 1.40
2633 2707 3.710677 CTCTCTCCTCCACCTCATCATTT 59.289 47.826 0.00 0.00 0.00 2.32
2634 2708 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
2635 2709 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
2636 2710 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
2637 2711 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
2638 2712 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
2639 2713 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
2640 2714 2.375146 GAGTTCTCTCTCCTCCACCTC 58.625 57.143 0.00 0.00 37.68 3.85
2641 2715 1.340600 CGAGTTCTCTCTCCTCCACCT 60.341 57.143 0.00 0.00 38.45 4.00
2642 2716 1.099689 CGAGTTCTCTCTCCTCCACC 58.900 60.000 0.00 0.00 38.45 4.61
2643 2717 2.116827 TCGAGTTCTCTCTCCTCCAC 57.883 55.000 0.00 0.00 38.45 4.02
2644 2718 2.040545 ACTTCGAGTTCTCTCTCCTCCA 59.959 50.000 0.00 0.00 38.45 3.86
2645 2719 2.718563 ACTTCGAGTTCTCTCTCCTCC 58.281 52.381 0.00 0.00 38.45 4.30
2646 2720 4.776795 AAACTTCGAGTTCTCTCTCCTC 57.223 45.455 1.58 0.00 37.47 3.71
2647 2721 4.342665 ACAAAACTTCGAGTTCTCTCTCCT 59.657 41.667 1.58 0.00 37.47 3.69
2648 2722 4.446051 CACAAAACTTCGAGTTCTCTCTCC 59.554 45.833 1.58 0.00 37.47 3.71
2649 2723 5.044558 ACACAAAACTTCGAGTTCTCTCTC 58.955 41.667 1.58 0.00 37.47 3.20
2650 2724 5.012328 ACACAAAACTTCGAGTTCTCTCT 57.988 39.130 1.58 0.00 37.47 3.10
2651 2725 5.520649 AGAACACAAAACTTCGAGTTCTCTC 59.479 40.000 6.61 0.00 41.04 3.20
2652 2726 5.420409 AGAACACAAAACTTCGAGTTCTCT 58.580 37.500 6.61 0.00 41.04 3.10
2653 2727 5.720261 AGAACACAAAACTTCGAGTTCTC 57.280 39.130 6.61 0.00 41.04 2.87
2654 2728 6.496338 AAAGAACACAAAACTTCGAGTTCT 57.504 33.333 6.61 6.61 45.24 3.01
2655 2729 8.836959 ATAAAAGAACACAAAACTTCGAGTTC 57.163 30.769 0.00 0.00 37.47 3.01
2656 2730 9.634163 AAATAAAAGAACACAAAACTTCGAGTT 57.366 25.926 0.00 0.00 40.80 3.01
2697 2771 9.920133 TGAGACATATTGTGCTAAGAGATTATC 57.080 33.333 0.00 0.00 0.00 1.75
2698 2772 9.703892 GTGAGACATATTGTGCTAAGAGATTAT 57.296 33.333 0.00 0.00 0.00 1.28
2699 2773 8.144478 GGTGAGACATATTGTGCTAAGAGATTA 58.856 37.037 0.00 0.00 0.00 1.75
2700 2774 6.989169 GGTGAGACATATTGTGCTAAGAGATT 59.011 38.462 0.00 0.00 0.00 2.40
2701 2775 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
2702 2776 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
2703 2777 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
2704 2778 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
2705 2779 5.819379 ACATGGTGAGACATATTGTGCTAAG 59.181 40.000 0.00 0.00 0.00 2.18
2706 2780 5.744171 ACATGGTGAGACATATTGTGCTAA 58.256 37.500 0.00 0.00 0.00 3.09
2707 2781 5.357742 ACATGGTGAGACATATTGTGCTA 57.642 39.130 0.00 0.00 0.00 3.49
2708 2782 4.226427 ACATGGTGAGACATATTGTGCT 57.774 40.909 0.00 0.00 0.00 4.40
2709 2783 4.970662 AACATGGTGAGACATATTGTGC 57.029 40.909 0.00 0.00 0.00 4.57
2710 2784 7.970061 CCTAAAAACATGGTGAGACATATTGTG 59.030 37.037 0.00 0.00 0.00 3.33
2711 2785 7.888021 TCCTAAAAACATGGTGAGACATATTGT 59.112 33.333 0.00 0.00 0.00 2.71
2712 2786 8.279970 TCCTAAAAACATGGTGAGACATATTG 57.720 34.615 0.00 0.00 0.00 1.90
2713 2787 8.877864 TTCCTAAAAACATGGTGAGACATATT 57.122 30.769 0.00 0.00 0.00 1.28
2715 2789 9.613428 CTATTCCTAAAAACATGGTGAGACATA 57.387 33.333 0.00 0.00 0.00 2.29
2716 2790 7.067494 GCTATTCCTAAAAACATGGTGAGACAT 59.933 37.037 0.00 0.00 0.00 3.06
2717 2791 6.374333 GCTATTCCTAAAAACATGGTGAGACA 59.626 38.462 0.00 0.00 0.00 3.41
2718 2792 6.599638 AGCTATTCCTAAAAACATGGTGAGAC 59.400 38.462 0.00 0.00 0.00 3.36
2719 2793 6.721318 AGCTATTCCTAAAAACATGGTGAGA 58.279 36.000 0.00 0.00 0.00 3.27
2720 2794 7.770897 ACTAGCTATTCCTAAAAACATGGTGAG 59.229 37.037 0.00 0.00 0.00 3.51
2721 2795 7.630082 ACTAGCTATTCCTAAAAACATGGTGA 58.370 34.615 0.00 0.00 0.00 4.02
2722 2796 7.865706 ACTAGCTATTCCTAAAAACATGGTG 57.134 36.000 0.00 0.00 0.00 4.17
2735 2809 9.157104 GCCTTATCTTCAATAACTAGCTATTCC 57.843 37.037 0.00 0.00 0.00 3.01
2736 2810 9.936759 AGCCTTATCTTCAATAACTAGCTATTC 57.063 33.333 0.00 0.00 0.00 1.75
2740 2814 9.148879 TCTTAGCCTTATCTTCAATAACTAGCT 57.851 33.333 0.00 0.00 0.00 3.32
2741 2815 9.198837 GTCTTAGCCTTATCTTCAATAACTAGC 57.801 37.037 0.00 0.00 0.00 3.42
2744 2818 9.553064 CATGTCTTAGCCTTATCTTCAATAACT 57.447 33.333 0.00 0.00 0.00 2.24
2745 2819 9.547753 TCATGTCTTAGCCTTATCTTCAATAAC 57.452 33.333 0.00 0.00 0.00 1.89
2746 2820 9.547753 GTCATGTCTTAGCCTTATCTTCAATAA 57.452 33.333 0.00 0.00 0.00 1.40
2747 2821 8.150945 GGTCATGTCTTAGCCTTATCTTCAATA 58.849 37.037 0.00 0.00 0.00 1.90
2748 2822 6.995091 GGTCATGTCTTAGCCTTATCTTCAAT 59.005 38.462 0.00 0.00 0.00 2.57
2749 2823 6.349300 GGTCATGTCTTAGCCTTATCTTCAA 58.651 40.000 0.00 0.00 0.00 2.69
2750 2824 5.163301 GGGTCATGTCTTAGCCTTATCTTCA 60.163 44.000 0.00 0.00 0.00 3.02
2751 2825 5.163301 TGGGTCATGTCTTAGCCTTATCTTC 60.163 44.000 2.48 0.00 34.30 2.87
2752 2826 4.721776 TGGGTCATGTCTTAGCCTTATCTT 59.278 41.667 2.48 0.00 34.30 2.40
2753 2827 4.298626 TGGGTCATGTCTTAGCCTTATCT 58.701 43.478 2.48 0.00 34.30 1.98
2754 2828 4.689612 TGGGTCATGTCTTAGCCTTATC 57.310 45.455 2.48 0.00 34.30 1.75
2755 2829 5.103940 ACAATGGGTCATGTCTTAGCCTTAT 60.104 40.000 2.48 0.00 34.30 1.73
2756 2830 4.227300 ACAATGGGTCATGTCTTAGCCTTA 59.773 41.667 2.48 0.00 34.30 2.69
2757 2831 3.010584 ACAATGGGTCATGTCTTAGCCTT 59.989 43.478 2.48 0.00 34.30 4.35
2758 2832 2.578021 ACAATGGGTCATGTCTTAGCCT 59.422 45.455 2.48 0.00 34.30 4.58
2759 2833 3.004752 ACAATGGGTCATGTCTTAGCC 57.995 47.619 0.00 0.00 0.00 3.93
2760 2834 4.811557 GTCTACAATGGGTCATGTCTTAGC 59.188 45.833 0.00 0.00 0.00 3.09
2761 2835 5.043903 CGTCTACAATGGGTCATGTCTTAG 58.956 45.833 0.00 0.00 0.00 2.18
2762 2836 4.464951 ACGTCTACAATGGGTCATGTCTTA 59.535 41.667 0.00 0.00 0.00 2.10
2763 2837 3.260884 ACGTCTACAATGGGTCATGTCTT 59.739 43.478 0.00 0.00 0.00 3.01
2764 2838 2.832129 ACGTCTACAATGGGTCATGTCT 59.168 45.455 0.00 0.00 0.00 3.41
2765 2839 3.119101 AGACGTCTACAATGGGTCATGTC 60.119 47.826 18.46 0.00 32.37 3.06
2766 2840 2.832129 AGACGTCTACAATGGGTCATGT 59.168 45.455 18.46 0.00 0.00 3.21
2767 2841 3.526931 AGACGTCTACAATGGGTCATG 57.473 47.619 18.46 0.00 0.00 3.07
2768 2842 4.553330 AAAGACGTCTACAATGGGTCAT 57.447 40.909 20.39 0.00 0.00 3.06
2769 2843 4.345859 AAAAGACGTCTACAATGGGTCA 57.654 40.909 20.39 0.00 0.00 4.02
2770 2844 4.514066 ACAAAAAGACGTCTACAATGGGTC 59.486 41.667 20.39 0.00 0.00 4.46
2771 2845 4.457466 ACAAAAAGACGTCTACAATGGGT 58.543 39.130 20.39 8.25 0.00 4.51
2772 2846 4.513692 TGACAAAAAGACGTCTACAATGGG 59.486 41.667 20.39 7.62 33.18 4.00
2773 2847 5.666969 TGACAAAAAGACGTCTACAATGG 57.333 39.130 20.39 9.20 33.18 3.16
2774 2848 7.011773 CAGATGACAAAAAGACGTCTACAATG 58.988 38.462 20.39 17.03 36.37 2.82
2775 2849 6.706270 ACAGATGACAAAAAGACGTCTACAAT 59.294 34.615 20.39 0.00 36.37 2.71
2776 2850 6.046593 ACAGATGACAAAAAGACGTCTACAA 58.953 36.000 20.39 1.02 36.37 2.41
2777 2851 5.597806 ACAGATGACAAAAAGACGTCTACA 58.402 37.500 20.39 12.24 36.37 2.74
2778 2852 7.813852 ATACAGATGACAAAAAGACGTCTAC 57.186 36.000 20.39 7.11 36.37 2.59
2782 2856 9.647797 TGTAATATACAGATGACAAAAAGACGT 57.352 29.630 0.00 0.00 34.06 4.34
2789 2863 9.612066 TCTTGCATGTAATATACAGATGACAAA 57.388 29.630 0.00 0.00 42.77 2.83
2790 2864 9.045223 GTCTTGCATGTAATATACAGATGACAA 57.955 33.333 0.00 0.00 42.77 3.18
2791 2865 8.424133 AGTCTTGCATGTAATATACAGATGACA 58.576 33.333 0.00 0.00 42.77 3.58
2792 2866 8.824159 AGTCTTGCATGTAATATACAGATGAC 57.176 34.615 0.00 0.00 42.77 3.06
2803 2877 9.890629 TGACTTATCTTAAGTCTTGCATGTAAT 57.109 29.630 21.60 0.00 45.13 1.89
2804 2878 9.719355 TTGACTTATCTTAAGTCTTGCATGTAA 57.281 29.630 21.60 0.00 45.13 2.41
2805 2879 9.890629 ATTGACTTATCTTAAGTCTTGCATGTA 57.109 29.630 21.60 0.00 45.13 2.29
2806 2880 8.798859 ATTGACTTATCTTAAGTCTTGCATGT 57.201 30.769 21.60 4.55 45.13 3.21
2807 2881 9.107177 AGATTGACTTATCTTAAGTCTTGCATG 57.893 33.333 21.60 0.00 45.13 4.06
2808 2882 9.323985 GAGATTGACTTATCTTAAGTCTTGCAT 57.676 33.333 21.60 12.12 45.13 3.96
2809 2883 8.314021 TGAGATTGACTTATCTTAAGTCTTGCA 58.686 33.333 21.60 12.93 45.13 4.08
2810 2884 8.709386 TGAGATTGACTTATCTTAAGTCTTGC 57.291 34.615 21.60 13.39 45.13 4.01
2815 2889 9.606631 GGTTGATGAGATTGACTTATCTTAAGT 57.393 33.333 1.63 0.00 40.71 2.24
2816 2890 9.605275 TGGTTGATGAGATTGACTTATCTTAAG 57.395 33.333 0.00 0.00 40.71 1.85
2819 2893 8.900781 CAATGGTTGATGAGATTGACTTATCTT 58.099 33.333 0.00 0.00 40.71 2.40
2820 2894 8.051535 ACAATGGTTGATGAGATTGACTTATCT 58.948 33.333 0.00 0.00 40.71 1.98
2821 2895 8.218338 ACAATGGTTGATGAGATTGACTTATC 57.782 34.615 0.00 0.00 40.56 1.75
2822 2896 9.113838 GTACAATGGTTGATGAGATTGACTTAT 57.886 33.333 0.00 0.00 31.53 1.73
2823 2897 8.100164 TGTACAATGGTTGATGAGATTGACTTA 58.900 33.333 0.00 0.00 31.53 2.24
2824 2898 6.942005 TGTACAATGGTTGATGAGATTGACTT 59.058 34.615 0.00 0.00 31.53 3.01
2825 2899 6.475504 TGTACAATGGTTGATGAGATTGACT 58.524 36.000 0.00 0.00 31.53 3.41
2826 2900 6.741992 TGTACAATGGTTGATGAGATTGAC 57.258 37.500 0.00 0.00 31.53 3.18
2827 2901 6.183360 GCATGTACAATGGTTGATGAGATTGA 60.183 38.462 0.00 0.00 31.53 2.57
2828 2902 5.975344 GCATGTACAATGGTTGATGAGATTG 59.025 40.000 0.00 0.00 32.99 2.67
2829 2903 5.068198 GGCATGTACAATGGTTGATGAGATT 59.932 40.000 0.00 0.00 0.00 2.40
2830 2904 4.581824 GGCATGTACAATGGTTGATGAGAT 59.418 41.667 0.00 0.00 0.00 2.75
2831 2905 3.947196 GGCATGTACAATGGTTGATGAGA 59.053 43.478 0.00 0.00 0.00 3.27
2832 2906 3.067180 GGGCATGTACAATGGTTGATGAG 59.933 47.826 0.00 0.00 0.00 2.90
2833 2907 3.023119 GGGCATGTACAATGGTTGATGA 58.977 45.455 0.00 0.00 0.00 2.92
2834 2908 3.025978 AGGGCATGTACAATGGTTGATG 58.974 45.455 0.00 0.00 0.00 3.07
2835 2909 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
2836 2910 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
2837 2911 3.181487 GCTTAGGGCATGTACAATGGTTG 60.181 47.826 0.00 0.00 41.35 3.77
2838 2912 3.023832 GCTTAGGGCATGTACAATGGTT 58.976 45.455 0.00 0.00 41.35 3.67
2839 2913 2.654863 GCTTAGGGCATGTACAATGGT 58.345 47.619 0.00 0.00 41.35 3.55
2840 2914 1.956477 GGCTTAGGGCATGTACAATGG 59.044 52.381 0.00 0.00 44.01 3.16
2841 2915 1.603802 CGGCTTAGGGCATGTACAATG 59.396 52.381 0.00 0.12 44.01 2.82
2842 2916 1.211949 ACGGCTTAGGGCATGTACAAT 59.788 47.619 0.00 0.00 44.01 2.71
2843 2917 0.616371 ACGGCTTAGGGCATGTACAA 59.384 50.000 0.00 0.00 44.01 2.41
2844 2918 0.177141 GACGGCTTAGGGCATGTACA 59.823 55.000 0.00 0.00 44.01 2.90
2845 2919 0.532196 GGACGGCTTAGGGCATGTAC 60.532 60.000 0.00 0.00 44.01 2.90
2846 2920 0.689745 AGGACGGCTTAGGGCATGTA 60.690 55.000 0.00 0.00 44.01 2.29
2847 2921 1.972660 GAGGACGGCTTAGGGCATGT 61.973 60.000 0.00 0.00 44.01 3.21
2848 2922 1.227674 GAGGACGGCTTAGGGCATG 60.228 63.158 0.00 0.00 44.01 4.06
2849 2923 1.689233 TGAGGACGGCTTAGGGCAT 60.689 57.895 0.00 0.00 44.01 4.40
2850 2924 2.284331 TGAGGACGGCTTAGGGCA 60.284 61.111 0.00 0.00 44.01 5.36
2851 2925 2.501610 CTGAGGACGGCTTAGGGC 59.498 66.667 0.00 0.00 40.90 5.19
2852 2926 3.095347 GCCTGAGGACGGCTTAGGG 62.095 68.421 0.65 0.00 44.17 3.53
2853 2927 2.501610 GCCTGAGGACGGCTTAGG 59.498 66.667 0.65 0.00 44.17 2.69
2869 2943 2.332063 TAAATCTAGGCACAGGCAGC 57.668 50.000 0.00 0.00 43.71 5.25
2870 2944 3.406764 GGATAAATCTAGGCACAGGCAG 58.593 50.000 0.00 0.00 43.71 4.85
2871 2945 2.224281 CGGATAAATCTAGGCACAGGCA 60.224 50.000 0.00 0.00 43.71 4.75
2872 2946 2.417719 CGGATAAATCTAGGCACAGGC 58.582 52.381 0.00 0.00 40.13 4.85
2873 2947 2.289694 CCCGGATAAATCTAGGCACAGG 60.290 54.545 0.73 0.00 0.00 4.00
2874 2948 2.368875 ACCCGGATAAATCTAGGCACAG 59.631 50.000 0.73 0.00 0.00 3.66
2875 2949 2.104111 CACCCGGATAAATCTAGGCACA 59.896 50.000 0.73 0.00 0.00 4.57
2876 2950 2.367567 TCACCCGGATAAATCTAGGCAC 59.632 50.000 0.73 0.00 0.00 5.01
2877 2951 2.632996 CTCACCCGGATAAATCTAGGCA 59.367 50.000 0.73 0.00 0.00 4.75
2878 2952 2.897969 TCTCACCCGGATAAATCTAGGC 59.102 50.000 0.73 0.00 0.00 3.93
2879 2953 3.057456 CGTCTCACCCGGATAAATCTAGG 60.057 52.174 0.73 0.00 0.00 3.02
2880 2954 3.612004 GCGTCTCACCCGGATAAATCTAG 60.612 52.174 0.73 0.00 0.00 2.43
2881 2955 2.295349 GCGTCTCACCCGGATAAATCTA 59.705 50.000 0.73 0.00 0.00 1.98
2882 2956 1.068741 GCGTCTCACCCGGATAAATCT 59.931 52.381 0.73 0.00 0.00 2.40
2883 2957 1.068741 AGCGTCTCACCCGGATAAATC 59.931 52.381 0.73 0.00 0.00 2.17
2884 2958 1.120530 AGCGTCTCACCCGGATAAAT 58.879 50.000 0.73 0.00 0.00 1.40
2885 2959 1.406539 GTAGCGTCTCACCCGGATAAA 59.593 52.381 0.73 0.00 0.00 1.40
2886 2960 1.027357 GTAGCGTCTCACCCGGATAA 58.973 55.000 0.73 0.00 0.00 1.75
2887 2961 0.820891 GGTAGCGTCTCACCCGGATA 60.821 60.000 0.73 0.00 0.00 2.59
2888 2962 2.125961 GGTAGCGTCTCACCCGGAT 61.126 63.158 0.73 0.00 0.00 4.18
2889 2963 1.913951 TAGGTAGCGTCTCACCCGGA 61.914 60.000 0.73 0.00 35.25 5.14
2890 2964 1.033746 TTAGGTAGCGTCTCACCCGG 61.034 60.000 0.00 0.00 35.25 5.73
2891 2965 1.001597 GATTAGGTAGCGTCTCACCCG 60.002 57.143 0.00 0.00 35.25 5.28
2892 2966 1.340568 GGATTAGGTAGCGTCTCACCC 59.659 57.143 0.00 0.00 35.25 4.61
2893 2967 2.029623 TGGATTAGGTAGCGTCTCACC 58.970 52.381 0.00 0.00 34.86 4.02
2894 2968 3.553096 CCATGGATTAGGTAGCGTCTCAC 60.553 52.174 5.56 0.00 0.00 3.51
2895 2969 2.628178 CCATGGATTAGGTAGCGTCTCA 59.372 50.000 5.56 0.00 0.00 3.27
2896 2970 2.891580 TCCATGGATTAGGTAGCGTCTC 59.108 50.000 11.44 0.00 0.00 3.36
2897 2971 2.894126 CTCCATGGATTAGGTAGCGTCT 59.106 50.000 16.63 0.00 0.00 4.18
2898 2972 2.891580 TCTCCATGGATTAGGTAGCGTC 59.108 50.000 16.63 0.00 0.00 5.19
2899 2973 2.958818 TCTCCATGGATTAGGTAGCGT 58.041 47.619 16.63 0.00 0.00 5.07
2900 2974 4.116747 GATCTCCATGGATTAGGTAGCG 57.883 50.000 16.63 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.