Multiple sequence alignment - TraesCS2A01G350000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G350000 chr2A 100.000 7765 0 0 1 7765 589780921 589788685 0.000000e+00 14340.0
1 TraesCS2A01G350000 chr2A 91.358 162 14 0 3259 3420 589783903 589784064 1.010000e-53 222.0
2 TraesCS2A01G350000 chr2A 91.358 162 14 0 2983 3144 589784179 589784340 1.010000e-53 222.0
3 TraesCS2A01G350000 chr2D 97.941 3545 69 4 3443 6985 446310903 446314445 0.000000e+00 6139.0
4 TraesCS2A01G350000 chr2D 96.912 842 21 5 2602 3442 446310037 446310874 0.000000e+00 1406.0
5 TraesCS2A01G350000 chr2D 85.238 989 67 38 400 1331 446305778 446306744 0.000000e+00 944.0
6 TraesCS2A01G350000 chr2D 86.156 809 58 30 6980 7765 446314728 446315505 0.000000e+00 824.0
7 TraesCS2A01G350000 chr2D 87.587 717 36 15 2000 2693 446307748 446308434 0.000000e+00 782.0
8 TraesCS2A01G350000 chr2D 85.246 488 37 9 400 865 446277883 446278357 3.280000e-128 470.0
9 TraesCS2A01G350000 chr2D 91.570 344 22 6 54 394 39421815 39422154 1.180000e-127 468.0
10 TraesCS2A01G350000 chr2D 76.718 524 63 29 2442 2929 446307211 446307711 3.620000e-58 237.0
11 TraesCS2A01G350000 chr2D 88.177 203 18 5 2983 3180 446310691 446310892 3.620000e-58 237.0
12 TraesCS2A01G350000 chr2D 87.755 196 21 3 2982 3176 446307350 446307543 7.840000e-55 226.0
13 TraesCS2A01G350000 chr2D 87.179 156 17 3 3264 3418 446307356 446307509 2.880000e-39 174.0
14 TraesCS2A01G350000 chr2D 91.525 59 3 2 2557 2615 446308413 446308469 6.460000e-11 80.5
15 TraesCS2A01G350000 chr2B 95.165 3888 133 23 3443 7311 525819303 525823154 0.000000e+00 6087.0
16 TraesCS2A01G350000 chr2B 92.660 1989 117 9 5802 7765 525566705 525568689 0.000000e+00 2837.0
17 TraesCS2A01G350000 chr2B 97.278 1102 26 4 4718 5818 525565593 525566691 0.000000e+00 1866.0
18 TraesCS2A01G350000 chr2B 96.037 858 29 5 2570 3426 525818006 525818859 0.000000e+00 1391.0
19 TraesCS2A01G350000 chr2B 90.975 964 56 11 400 1344 525814587 525815538 0.000000e+00 1269.0
20 TraesCS2A01G350000 chr2B 88.254 945 90 9 3719 4663 525564673 525565596 0.000000e+00 1110.0
21 TraesCS2A01G350000 chr2B 92.837 698 27 7 2000 2693 525816753 525817431 0.000000e+00 990.0
22 TraesCS2A01G350000 chr2B 81.017 964 80 49 400 1330 525562378 525563271 0.000000e+00 671.0
23 TraesCS2A01G350000 chr2B 87.544 562 44 15 2134 2693 525817479 525818016 1.840000e-175 627.0
24 TraesCS2A01G350000 chr2B 93.713 334 19 2 1671 2003 525816374 525816706 4.180000e-137 499.0
25 TraesCS2A01G350000 chr2B 90.250 400 13 16 7373 7765 525823146 525823526 4.180000e-137 499.0
26 TraesCS2A01G350000 chr2B 86.453 406 41 11 1 396 63259577 63259978 4.300000e-117 433.0
27 TraesCS2A01G350000 chr2B 85.260 346 44 6 2548 2888 525819148 525819491 4.460000e-92 350.0
28 TraesCS2A01G350000 chr2B 87.956 274 24 5 2947 3217 525819121 525819388 1.630000e-81 315.0
29 TraesCS2A01G350000 chr2B 95.028 181 7 2 3442 3621 525818931 525819110 4.590000e-72 283.0
30 TraesCS2A01G350000 chr2B 88.584 219 19 4 2570 2785 525817421 525817636 2.150000e-65 261.0
31 TraesCS2A01G350000 chr2B 77.752 427 61 16 2554 2965 525564031 525564438 1.690000e-56 231.0
32 TraesCS2A01G350000 chr2B 89.941 169 17 0 2983 3151 525818693 525818861 1.310000e-52 219.0
33 TraesCS2A01G350000 chr2B 83.710 221 29 4 2975 3194 525816795 525817009 1.320000e-47 202.0
34 TraesCS2A01G350000 chr2B 89.375 160 17 0 3259 3418 525818418 525818577 1.320000e-47 202.0
35 TraesCS2A01G350000 chr2B 87.654 162 17 2 3259 3418 525819158 525819318 1.330000e-42 185.0
36 TraesCS2A01G350000 chr2B 78.049 328 26 19 2042 2339 525819150 525819461 1.730000e-36 165.0
37 TraesCS2A01G350000 chr2B 95.789 95 4 0 1590 1684 525816121 525816215 3.750000e-33 154.0
38 TraesCS2A01G350000 chr4B 85.859 396 40 11 5 387 177863330 177863722 2.610000e-109 407.0
39 TraesCS2A01G350000 chr1A 85.393 356 40 10 59 405 338212403 338212051 7.410000e-95 359.0
40 TraesCS2A01G350000 chr1A 100.000 28 0 0 4659 4686 480430447 480430420 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G350000 chr2A 589780921 589788685 7764 False 14340.000000 14340 100.000000 1 7765 1 chr2A.!!$F1 7764
1 TraesCS2A01G350000 chr2D 446305778 446315505 9727 False 1104.950000 6139 88.518800 400 7765 10 chr2D.!!$F3 7365
2 TraesCS2A01G350000 chr2B 525562378 525568689 6311 False 1343.000000 2837 87.392200 400 7765 5 chr2B.!!$F2 7365
3 TraesCS2A01G350000 chr2B 525814587 525823526 8939 False 805.764706 6087 89.874529 400 7765 17 chr2B.!!$F3 7365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.179089 AGCTAGACATGCTCCAAGCG 60.179 55.000 0.00 0.00 46.26 4.68 F
1020 1089 0.179020 TGGAGCTTGAAGGGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82 F
1818 2459 0.251033 GTTCCTTACCCGGTTTGGCT 60.251 55.000 0.00 0.00 35.87 4.75 F
1820 2461 0.838987 TCCTTACCCGGTTTGGCTCT 60.839 55.000 0.00 0.00 35.87 4.09 F
2349 4197 1.000896 GGCTGCAAGTACCATGGGT 60.001 57.895 18.09 4.30 40.16 4.51 F
3605 7775 2.900046 GCTGCAACATTTTGTACGTACG 59.100 45.455 20.18 15.01 34.90 3.67 F
4658 9049 4.103627 TCAGTGTATGATCATGCTCCCATT 59.896 41.667 22.15 3.05 31.12 3.16 F
5432 9824 0.458669 GCTTGATCCCAATGCACTGG 59.541 55.000 7.36 7.36 36.10 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 2457 0.723981 GCATGAACGAGGTCAAGAGC 59.276 55.000 0.00 0.00 0.00 4.09 R
2125 3338 1.001815 GCTTCTTTAACTTGCGCCACA 60.002 47.619 4.18 0.00 0.00 4.17 R
3388 7104 3.067742 CCATTGATTCTTGACCATGAGGC 59.932 47.826 0.00 0.00 39.06 4.70 R
3605 7775 5.963594 AGGTTGTTCTTCTACTTATCCGTC 58.036 41.667 0.00 0.00 0.00 4.79 R
4267 8658 7.659390 GCTACTTCACTATTAGGCTTGATTGAT 59.341 37.037 0.00 0.00 0.00 2.57 R
4680 9071 1.512156 AATGACCGCCCGTTGACAAC 61.512 55.000 8.34 8.34 0.00 3.32 R
6527 10950 0.098200 CAGCAACGATGGACTGCATG 59.902 55.000 8.65 0.00 38.58 4.06 R
7327 12047 0.401395 ACCAGTTCCCCCAACTCTCA 60.401 55.000 0.00 0.00 44.14 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.395190 TTTTTGGAATGGTCTATCAGTGATG 57.605 36.000 16.15 6.11 0.00 3.07
33 34 5.955961 TTGGAATGGTCTATCAGTGATGA 57.044 39.130 16.15 8.31 0.00 2.92
34 35 5.955961 TGGAATGGTCTATCAGTGATGAA 57.044 39.130 16.15 0.52 0.00 2.57
35 36 6.505048 TGGAATGGTCTATCAGTGATGAAT 57.495 37.500 16.15 1.00 0.00 2.57
36 37 6.903516 TGGAATGGTCTATCAGTGATGAATT 58.096 36.000 16.15 8.48 0.00 2.17
37 38 6.769341 TGGAATGGTCTATCAGTGATGAATTG 59.231 38.462 16.15 1.46 0.00 2.32
38 39 6.769822 GGAATGGTCTATCAGTGATGAATTGT 59.230 38.462 16.15 0.00 0.00 2.71
39 40 7.041508 GGAATGGTCTATCAGTGATGAATTGTC 60.042 40.741 16.15 5.15 0.00 3.18
40 41 6.298441 TGGTCTATCAGTGATGAATTGTCA 57.702 37.500 16.15 2.70 38.41 3.58
79 80 4.946784 ACAAGCTAAAATCCACTAAGCG 57.053 40.909 0.00 0.00 38.23 4.68
80 81 4.575885 ACAAGCTAAAATCCACTAAGCGA 58.424 39.130 0.00 0.00 38.23 4.93
81 82 5.001232 ACAAGCTAAAATCCACTAAGCGAA 58.999 37.500 0.00 0.00 38.23 4.70
82 83 5.106673 ACAAGCTAAAATCCACTAAGCGAAC 60.107 40.000 0.00 0.00 38.23 3.95
83 84 3.939592 AGCTAAAATCCACTAAGCGAACC 59.060 43.478 0.00 0.00 38.23 3.62
84 85 3.687698 GCTAAAATCCACTAAGCGAACCA 59.312 43.478 0.00 0.00 0.00 3.67
85 86 4.335594 GCTAAAATCCACTAAGCGAACCAT 59.664 41.667 0.00 0.00 0.00 3.55
86 87 5.163652 GCTAAAATCCACTAAGCGAACCATT 60.164 40.000 0.00 0.00 0.00 3.16
87 88 5.722021 AAAATCCACTAAGCGAACCATTT 57.278 34.783 0.00 0.00 0.00 2.32
88 89 4.701956 AATCCACTAAGCGAACCATTTG 57.298 40.909 0.00 0.00 0.00 2.32
89 90 2.432444 TCCACTAAGCGAACCATTTGG 58.568 47.619 0.00 0.00 42.17 3.28
153 154 8.763049 TCATATGATAAGATTTCGTAGCAAGG 57.237 34.615 0.00 0.00 30.87 3.61
154 155 5.931441 ATGATAAGATTTCGTAGCAAGGC 57.069 39.130 0.00 0.00 30.87 4.35
155 156 4.765273 TGATAAGATTTCGTAGCAAGGCA 58.235 39.130 0.00 0.00 0.00 4.75
156 157 5.368145 TGATAAGATTTCGTAGCAAGGCAT 58.632 37.500 0.00 0.00 0.00 4.40
157 158 5.822519 TGATAAGATTTCGTAGCAAGGCATT 59.177 36.000 0.00 0.00 0.00 3.56
158 159 6.318648 TGATAAGATTTCGTAGCAAGGCATTT 59.681 34.615 0.00 0.00 0.00 2.32
159 160 7.497579 TGATAAGATTTCGTAGCAAGGCATTTA 59.502 33.333 0.00 0.00 0.00 1.40
160 161 6.509418 AAGATTTCGTAGCAAGGCATTTAA 57.491 33.333 0.00 0.00 0.00 1.52
161 162 6.699575 AGATTTCGTAGCAAGGCATTTAAT 57.300 33.333 0.00 0.00 0.00 1.40
162 163 7.100458 AGATTTCGTAGCAAGGCATTTAATT 57.900 32.000 0.00 0.00 0.00 1.40
163 164 7.196331 AGATTTCGTAGCAAGGCATTTAATTC 58.804 34.615 0.00 0.00 0.00 2.17
164 165 5.888691 TTCGTAGCAAGGCATTTAATTCA 57.111 34.783 0.00 0.00 0.00 2.57
165 166 6.449635 TTCGTAGCAAGGCATTTAATTCAT 57.550 33.333 0.00 0.00 0.00 2.57
166 167 7.561021 TTCGTAGCAAGGCATTTAATTCATA 57.439 32.000 0.00 0.00 0.00 2.15
167 168 7.744087 TCGTAGCAAGGCATTTAATTCATAT 57.256 32.000 0.00 0.00 0.00 1.78
168 169 7.806690 TCGTAGCAAGGCATTTAATTCATATC 58.193 34.615 0.00 0.00 0.00 1.63
169 170 7.443879 TCGTAGCAAGGCATTTAATTCATATCA 59.556 33.333 0.00 0.00 0.00 2.15
170 171 8.239314 CGTAGCAAGGCATTTAATTCATATCAT 58.761 33.333 0.00 0.00 0.00 2.45
208 209 9.965824 ATTTGATTAACAACTTTGTCTACTTGG 57.034 29.630 0.00 0.00 41.31 3.61
209 210 6.966021 TGATTAACAACTTTGTCTACTTGGC 58.034 36.000 0.00 0.00 41.31 4.52
210 211 5.761165 TTAACAACTTTGTCTACTTGGCC 57.239 39.130 0.00 0.00 41.31 5.36
211 212 2.583143 ACAACTTTGTCTACTTGGCCC 58.417 47.619 0.00 0.00 36.50 5.80
212 213 2.092103 ACAACTTTGTCTACTTGGCCCA 60.092 45.455 0.00 0.00 36.50 5.36
213 214 3.157087 CAACTTTGTCTACTTGGCCCAT 58.843 45.455 0.00 0.00 0.00 4.00
214 215 4.202524 ACAACTTTGTCTACTTGGCCCATA 60.203 41.667 0.00 0.00 36.50 2.74
215 216 4.862641 ACTTTGTCTACTTGGCCCATAT 57.137 40.909 0.00 0.00 0.00 1.78
216 217 4.526970 ACTTTGTCTACTTGGCCCATATG 58.473 43.478 0.00 0.00 0.00 1.78
217 218 4.018415 ACTTTGTCTACTTGGCCCATATGT 60.018 41.667 0.00 0.00 0.00 2.29
218 219 3.558931 TGTCTACTTGGCCCATATGTG 57.441 47.619 0.00 0.00 0.00 3.21
219 220 3.111484 TGTCTACTTGGCCCATATGTGA 58.889 45.455 0.00 0.00 0.00 3.58
220 221 3.521531 TGTCTACTTGGCCCATATGTGAA 59.478 43.478 0.00 0.00 0.00 3.18
221 222 4.018870 TGTCTACTTGGCCCATATGTGAAA 60.019 41.667 0.00 0.00 0.00 2.69
222 223 5.133221 GTCTACTTGGCCCATATGTGAAAT 58.867 41.667 0.00 0.00 0.00 2.17
223 224 5.594317 GTCTACTTGGCCCATATGTGAAATT 59.406 40.000 0.00 0.00 0.00 1.82
224 225 6.770785 GTCTACTTGGCCCATATGTGAAATTA 59.229 38.462 0.00 0.00 0.00 1.40
225 226 7.448469 GTCTACTTGGCCCATATGTGAAATTAT 59.552 37.037 0.00 0.00 0.00 1.28
226 227 8.004215 TCTACTTGGCCCATATGTGAAATTATT 58.996 33.333 0.00 0.00 0.00 1.40
227 228 6.819284 ACTTGGCCCATATGTGAAATTATTG 58.181 36.000 0.00 0.00 0.00 1.90
228 229 6.610830 ACTTGGCCCATATGTGAAATTATTGA 59.389 34.615 0.00 0.00 0.00 2.57
229 230 6.403866 TGGCCCATATGTGAAATTATTGAC 57.596 37.500 0.00 0.00 0.00 3.18
230 231 5.896106 TGGCCCATATGTGAAATTATTGACA 59.104 36.000 0.00 0.00 37.07 3.58
231 232 6.382282 TGGCCCATATGTGAAATTATTGACAA 59.618 34.615 0.00 0.00 36.24 3.18
232 233 7.093156 TGGCCCATATGTGAAATTATTGACAAA 60.093 33.333 0.00 0.00 36.24 2.83
233 234 7.933033 GGCCCATATGTGAAATTATTGACAAAT 59.067 33.333 1.24 0.00 36.24 2.32
234 235 9.979578 GCCCATATGTGAAATTATTGACAAATA 57.020 29.630 1.24 0.00 36.24 1.40
259 260 4.527509 GCTATAGCTAGACATGCTCCAA 57.472 45.455 17.75 0.00 41.46 3.53
260 261 4.493547 GCTATAGCTAGACATGCTCCAAG 58.506 47.826 17.75 0.00 41.46 3.61
261 262 2.898729 TAGCTAGACATGCTCCAAGC 57.101 50.000 0.00 2.86 41.46 4.01
262 263 0.179089 AGCTAGACATGCTCCAAGCG 60.179 55.000 0.00 0.00 46.26 4.68
263 264 0.460987 GCTAGACATGCTCCAAGCGT 60.461 55.000 0.00 0.00 46.26 5.07
268 269 3.659334 ATGCTCCAAGCGTGTGTG 58.341 55.556 0.00 0.00 46.26 3.82
269 270 1.227943 ATGCTCCAAGCGTGTGTGT 60.228 52.632 0.00 0.00 46.26 3.72
270 271 1.509644 ATGCTCCAAGCGTGTGTGTG 61.510 55.000 0.00 0.00 46.26 3.82
271 272 2.180204 GCTCCAAGCGTGTGTGTGT 61.180 57.895 0.00 0.00 0.00 3.72
272 273 1.643292 CTCCAAGCGTGTGTGTGTG 59.357 57.895 0.00 0.00 0.00 3.82
273 274 1.078778 TCCAAGCGTGTGTGTGTGT 60.079 52.632 0.00 0.00 0.00 3.72
274 275 1.062365 CCAAGCGTGTGTGTGTGTG 59.938 57.895 0.00 0.00 0.00 3.82
275 276 1.643868 CCAAGCGTGTGTGTGTGTGT 61.644 55.000 0.00 0.00 0.00 3.72
276 277 0.521034 CAAGCGTGTGTGTGTGTGTG 60.521 55.000 0.00 0.00 0.00 3.82
277 278 0.953471 AAGCGTGTGTGTGTGTGTGT 60.953 50.000 0.00 0.00 0.00 3.72
278 279 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
279 280 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
280 281 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
281 282 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
282 283 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
283 284 1.270571 TGTGTGTGTGTGTGTGTGTCT 60.271 47.619 0.00 0.00 0.00 3.41
284 285 2.028930 TGTGTGTGTGTGTGTGTGTCTA 60.029 45.455 0.00 0.00 0.00 2.59
285 286 2.347452 GTGTGTGTGTGTGTGTGTCTAC 59.653 50.000 0.00 0.00 0.00 2.59
286 287 2.232696 TGTGTGTGTGTGTGTGTCTACT 59.767 45.455 0.00 0.00 0.00 2.57
287 288 2.603110 GTGTGTGTGTGTGTGTCTACTG 59.397 50.000 0.00 0.00 0.00 2.74
288 289 2.232696 TGTGTGTGTGTGTGTCTACTGT 59.767 45.455 0.00 0.00 0.00 3.55
289 290 2.858344 GTGTGTGTGTGTGTCTACTGTC 59.142 50.000 0.00 0.00 0.00 3.51
290 291 2.758423 TGTGTGTGTGTGTCTACTGTCT 59.242 45.455 0.00 0.00 0.00 3.41
291 292 3.194755 TGTGTGTGTGTGTCTACTGTCTT 59.805 43.478 0.00 0.00 0.00 3.01
292 293 3.551890 GTGTGTGTGTGTCTACTGTCTTG 59.448 47.826 0.00 0.00 0.00 3.02
293 294 3.123804 GTGTGTGTGTCTACTGTCTTGG 58.876 50.000 0.00 0.00 0.00 3.61
294 295 2.135933 GTGTGTGTCTACTGTCTTGGC 58.864 52.381 0.00 0.00 0.00 4.52
295 296 1.070134 TGTGTGTCTACTGTCTTGGCC 59.930 52.381 0.00 0.00 0.00 5.36
296 297 1.070134 GTGTGTCTACTGTCTTGGCCA 59.930 52.381 0.00 0.00 0.00 5.36
297 298 1.344438 TGTGTCTACTGTCTTGGCCAG 59.656 52.381 5.11 0.00 36.01 4.85
298 299 0.976641 TGTCTACTGTCTTGGCCAGG 59.023 55.000 8.96 8.96 34.16 4.45
299 300 0.391793 GTCTACTGTCTTGGCCAGGC 60.392 60.000 10.65 1.26 34.16 4.85
300 301 0.545309 TCTACTGTCTTGGCCAGGCT 60.545 55.000 12.43 0.00 34.16 4.58
301 302 0.326264 CTACTGTCTTGGCCAGGCTT 59.674 55.000 12.43 0.00 34.16 4.35
302 303 1.555075 CTACTGTCTTGGCCAGGCTTA 59.445 52.381 12.43 0.00 34.16 3.09
303 304 0.326264 ACTGTCTTGGCCAGGCTTAG 59.674 55.000 12.43 10.26 34.16 2.18
304 305 0.615331 CTGTCTTGGCCAGGCTTAGA 59.385 55.000 12.43 11.47 0.00 2.10
305 306 1.211457 CTGTCTTGGCCAGGCTTAGAT 59.789 52.381 12.43 0.00 0.00 1.98
306 307 2.435805 CTGTCTTGGCCAGGCTTAGATA 59.564 50.000 12.43 11.34 0.00 1.98
307 308 3.048600 TGTCTTGGCCAGGCTTAGATAT 58.951 45.455 12.43 0.00 0.00 1.63
308 309 3.181451 TGTCTTGGCCAGGCTTAGATATG 60.181 47.826 12.43 0.00 0.00 1.78
309 310 3.071602 GTCTTGGCCAGGCTTAGATATGA 59.928 47.826 12.43 0.00 0.00 2.15
310 311 3.716353 TCTTGGCCAGGCTTAGATATGAA 59.284 43.478 12.43 0.00 0.00 2.57
311 312 3.777106 TGGCCAGGCTTAGATATGAAG 57.223 47.619 12.43 0.00 0.00 3.02
313 314 2.039613 GGCCAGGCTTAGATATGAAGCT 59.960 50.000 12.43 0.00 46.93 3.74
314 315 3.261897 GGCCAGGCTTAGATATGAAGCTA 59.738 47.826 12.43 0.00 46.93 3.32
315 316 4.080638 GGCCAGGCTTAGATATGAAGCTAT 60.081 45.833 12.43 5.59 46.93 2.97
316 317 5.115480 GCCAGGCTTAGATATGAAGCTATC 58.885 45.833 3.29 0.00 46.93 2.08
317 318 5.669477 CCAGGCTTAGATATGAAGCTATCC 58.331 45.833 15.26 3.22 46.93 2.59
318 319 5.347342 CAGGCTTAGATATGAAGCTATCCG 58.653 45.833 15.26 1.56 46.93 4.18
319 320 4.404073 AGGCTTAGATATGAAGCTATCCGG 59.596 45.833 15.26 0.00 46.93 5.14
320 321 4.402793 GGCTTAGATATGAAGCTATCCGGA 59.597 45.833 6.61 6.61 46.93 5.14
321 322 5.105310 GGCTTAGATATGAAGCTATCCGGAA 60.105 44.000 9.01 0.00 46.93 4.30
322 323 6.398918 GCTTAGATATGAAGCTATCCGGAAA 58.601 40.000 9.01 0.00 44.83 3.13
323 324 7.044798 GCTTAGATATGAAGCTATCCGGAAAT 58.955 38.462 9.01 0.00 44.83 2.17
324 325 7.550906 GCTTAGATATGAAGCTATCCGGAAATT 59.449 37.037 9.01 0.06 44.83 1.82
325 326 9.442047 CTTAGATATGAAGCTATCCGGAAATTT 57.558 33.333 9.01 0.16 0.00 1.82
326 327 7.678947 AGATATGAAGCTATCCGGAAATTTG 57.321 36.000 9.01 0.00 0.00 2.32
327 328 7.227156 AGATATGAAGCTATCCGGAAATTTGT 58.773 34.615 9.01 0.00 0.00 2.83
328 329 4.963276 TGAAGCTATCCGGAAATTTGTG 57.037 40.909 9.01 0.00 0.00 3.33
329 330 4.331968 TGAAGCTATCCGGAAATTTGTGT 58.668 39.130 9.01 0.00 0.00 3.72
330 331 4.155826 TGAAGCTATCCGGAAATTTGTGTG 59.844 41.667 9.01 0.00 0.00 3.82
331 332 3.016736 AGCTATCCGGAAATTTGTGTGG 58.983 45.455 9.01 0.00 0.00 4.17
332 333 2.479560 GCTATCCGGAAATTTGTGTGGC 60.480 50.000 9.01 0.00 0.00 5.01
333 334 1.626686 ATCCGGAAATTTGTGTGGCA 58.373 45.000 9.01 0.00 0.00 4.92
334 335 0.671251 TCCGGAAATTTGTGTGGCAC 59.329 50.000 11.55 11.55 34.56 5.01
335 336 0.387202 CCGGAAATTTGTGTGGCACA 59.613 50.000 17.96 17.96 43.02 4.57
364 365 5.756195 TTTTGGCTTCATCGATATCTTGG 57.244 39.130 0.00 0.00 0.00 3.61
365 366 2.771089 TGGCTTCATCGATATCTTGGC 58.229 47.619 0.00 0.33 0.00 4.52
366 367 2.079925 GGCTTCATCGATATCTTGGCC 58.920 52.381 0.00 0.00 0.00 5.36
367 368 2.079925 GCTTCATCGATATCTTGGCCC 58.920 52.381 0.00 0.00 0.00 5.80
368 369 2.704572 CTTCATCGATATCTTGGCCCC 58.295 52.381 0.00 0.00 0.00 5.80
369 370 0.984230 TCATCGATATCTTGGCCCCC 59.016 55.000 0.00 0.00 0.00 5.40
388 389 4.974399 CCCCCTTATGTCTAAATCCTGAC 58.026 47.826 0.00 0.00 0.00 3.51
389 390 4.660771 CCCCCTTATGTCTAAATCCTGACT 59.339 45.833 0.00 0.00 34.57 3.41
390 391 5.132816 CCCCCTTATGTCTAAATCCTGACTT 59.867 44.000 0.00 0.00 34.57 3.01
391 392 6.292150 CCCCTTATGTCTAAATCCTGACTTC 58.708 44.000 0.00 0.00 34.57 3.01
392 393 5.986135 CCCTTATGTCTAAATCCTGACTTCG 59.014 44.000 0.00 0.00 34.57 3.79
393 394 5.463724 CCTTATGTCTAAATCCTGACTTCGC 59.536 44.000 0.00 0.00 34.57 4.70
394 395 3.247006 TGTCTAAATCCTGACTTCGCC 57.753 47.619 0.00 0.00 34.57 5.54
395 396 2.093658 TGTCTAAATCCTGACTTCGCCC 60.094 50.000 0.00 0.00 34.57 6.13
396 397 2.168728 GTCTAAATCCTGACTTCGCCCT 59.831 50.000 0.00 0.00 0.00 5.19
397 398 2.838202 TCTAAATCCTGACTTCGCCCTT 59.162 45.455 0.00 0.00 0.00 3.95
398 399 1.826385 AAATCCTGACTTCGCCCTTG 58.174 50.000 0.00 0.00 0.00 3.61
508 509 0.664466 TCTGCTTGACGCGAACAGAG 60.664 55.000 15.93 12.91 43.27 3.35
542 543 1.283181 GATCGATCGACGTGGGAGG 59.717 63.158 22.06 0.00 43.13 4.30
587 588 3.465742 AGAGATCCGATCACAATGGTG 57.534 47.619 11.01 0.00 46.66 4.17
595 596 1.394917 GATCACAATGGTGTCAGCGAC 59.605 52.381 0.00 2.32 45.45 5.19
609 610 4.003788 CGACCGACAAGCTGGGGT 62.004 66.667 0.00 0.00 32.18 4.95
616 618 3.305516 CAAGCTGGGGTTGTGGCC 61.306 66.667 0.00 0.00 36.45 5.36
649 651 6.494952 TCTCCATCTTAACTGGAACTAGAGT 58.505 40.000 0.00 0.00 42.12 3.24
676 692 2.735772 GGCGGGATCTCAGCTCCAA 61.736 63.158 8.87 0.00 34.24 3.53
718 746 2.283529 CCTGCCGCGGGGTCTATAT 61.284 63.158 29.38 0.00 34.97 0.86
759 790 2.159627 CGGGAGACACACATTTAAGCAC 59.840 50.000 0.00 0.00 0.00 4.40
838 886 2.270352 ATTGTGCCTCCGAGAAACAA 57.730 45.000 14.51 14.51 35.41 2.83
930 988 3.271729 CCATCCATGCATATGAGAGAGC 58.728 50.000 6.97 0.00 36.36 4.09
938 999 7.174426 TCCATGCATATGAGAGAGCAATAAAAG 59.826 37.037 6.97 0.00 40.76 2.27
1020 1089 0.179020 TGGAGCTTGAAGGGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1047 1116 0.533755 GAGGGAATGCTGTGGATCGG 60.534 60.000 0.00 0.00 0.00 4.18
1097 1166 1.272490 CTTCCTCTACGGTGAGCAACA 59.728 52.381 0.00 0.00 33.02 3.33
1101 1170 2.548067 CCTCTACGGTGAGCAACAAACT 60.548 50.000 0.00 0.00 33.02 2.66
1104 1173 5.393787 CCTCTACGGTGAGCAACAAACTATA 60.394 44.000 0.00 0.00 33.02 1.31
1105 1174 5.647589 TCTACGGTGAGCAACAAACTATAG 58.352 41.667 0.00 0.00 0.00 1.31
1106 1175 3.000727 ACGGTGAGCAACAAACTATAGC 58.999 45.455 0.00 0.00 0.00 2.97
1122 1198 9.803315 CAAACTATAGCTGTTTCTGTCATACTA 57.197 33.333 0.00 0.00 35.71 1.82
1126 1202 9.781834 CTATAGCTGTTTCTGTCATACTATAGC 57.218 37.037 0.00 0.00 33.30 2.97
1127 1203 6.723298 AGCTGTTTCTGTCATACTATAGCT 57.277 37.500 0.00 0.00 33.37 3.32
1128 1204 7.825331 AGCTGTTTCTGTCATACTATAGCTA 57.175 36.000 0.00 0.00 36.16 3.32
1129 1205 7.881142 AGCTGTTTCTGTCATACTATAGCTAG 58.119 38.462 0.00 0.00 36.16 3.42
1130 1206 6.584563 GCTGTTTCTGTCATACTATAGCTAGC 59.415 42.308 6.62 6.62 0.00 3.42
1229 1315 5.701290 AGCTCATTTCCGTATATAAACTGCC 59.299 40.000 0.00 0.00 0.00 4.85
1278 1364 8.946935 CATGAACAATGTGTTATTTGCTATACG 58.053 33.333 0.00 0.00 41.28 3.06
1279 1365 8.035165 TGAACAATGTGTTATTTGCTATACGT 57.965 30.769 0.00 0.00 41.28 3.57
1281 1367 9.976255 GAACAATGTGTTATTTGCTATACGTTA 57.024 29.630 0.00 0.00 41.28 3.18
1295 1381 2.754946 ACGTTATTTTCAGCCTCCGA 57.245 45.000 0.00 0.00 0.00 4.55
1328 1414 2.200081 TCCTTCCAGGCTTCTTGCTAT 58.800 47.619 0.00 0.00 42.39 2.97
1344 1430 3.074412 TGCTATACGATCGATCAGAGCA 58.926 45.455 23.49 23.49 34.30 4.26
1345 1431 3.126000 TGCTATACGATCGATCAGAGCAG 59.874 47.826 23.49 15.16 34.30 4.24
1346 1432 3.486708 GCTATACGATCGATCAGAGCAGG 60.487 52.174 24.34 9.17 34.30 4.85
1347 1433 1.239347 TACGATCGATCAGAGCAGGG 58.761 55.000 24.34 8.47 34.30 4.45
1348 1434 0.466372 ACGATCGATCAGAGCAGGGA 60.466 55.000 24.34 0.00 34.30 4.20
1349 1435 0.670706 CGATCGATCAGAGCAGGGAA 59.329 55.000 24.40 0.00 34.30 3.97
1350 1436 1.067669 CGATCGATCAGAGCAGGGAAA 59.932 52.381 24.40 0.00 34.30 3.13
1351 1437 2.288702 CGATCGATCAGAGCAGGGAAAT 60.289 50.000 24.40 0.00 34.30 2.17
1352 1438 3.057245 CGATCGATCAGAGCAGGGAAATA 60.057 47.826 24.40 0.00 34.30 1.40
1353 1439 4.559502 CGATCGATCAGAGCAGGGAAATAA 60.560 45.833 24.40 0.00 34.30 1.40
1354 1440 4.753516 TCGATCAGAGCAGGGAAATAAA 57.246 40.909 0.00 0.00 0.00 1.40
1356 1442 4.876107 TCGATCAGAGCAGGGAAATAAAAC 59.124 41.667 0.00 0.00 0.00 2.43
1381 1569 6.291322 CGTAGTGTTCTTCGCATCAGAAATAG 60.291 42.308 0.00 0.00 31.98 1.73
1398 1586 6.575201 CAGAAATAGAGTGAAAAACGCACTTC 59.425 38.462 0.00 0.00 45.94 3.01
1402 1590 1.404035 AGTGAAAAACGCACTTCCCAC 59.596 47.619 0.00 0.00 43.67 4.61
1404 1592 0.658897 GAAAAACGCACTTCCCACGA 59.341 50.000 0.00 0.00 0.00 4.35
1410 1598 2.879233 GCACTTCCCACGACCAGGA 61.879 63.158 0.00 0.00 0.00 3.86
1432 1812 2.664916 GCAAATATTATGTGCCCAGCG 58.335 47.619 7.50 0.00 31.94 5.18
1466 1847 9.937175 CTTGCTACCTTAATATTTGTCTAAAGC 57.063 33.333 0.00 0.00 0.00 3.51
1475 1856 3.878086 TTTGTCTAAAGCAGCGAACAG 57.122 42.857 0.00 0.00 0.00 3.16
1481 1862 0.954452 AAAGCAGCGAACAGGAAAGG 59.046 50.000 0.00 0.00 0.00 3.11
1488 1869 2.084546 GCGAACAGGAAAGGCTAACAT 58.915 47.619 0.00 0.00 0.00 2.71
1495 1876 4.702131 ACAGGAAAGGCTAACATGACAATC 59.298 41.667 0.00 0.00 0.00 2.67
1503 1884 4.201783 GGCTAACATGACAATCGTACCAAC 60.202 45.833 0.00 0.00 0.00 3.77
1543 2007 5.771666 AGGATCGATAATGCAACAATCCAAT 59.228 36.000 0.00 3.92 34.86 3.16
1551 2015 4.299586 TGCAACAATCCAATGACCTAGA 57.700 40.909 0.00 0.00 0.00 2.43
1554 2018 5.716228 TGCAACAATCCAATGACCTAGAAAT 59.284 36.000 0.00 0.00 0.00 2.17
1746 2387 4.713792 AGTTCACTTTGTCCCTTCATCT 57.286 40.909 0.00 0.00 0.00 2.90
1788 2429 5.333566 TGGTCCCTCATTTTTCTAAACCT 57.666 39.130 0.00 0.00 0.00 3.50
1816 2457 2.951269 GGTTCCTTACCCGGTTTGG 58.049 57.895 0.00 0.00 41.43 3.28
1818 2459 0.251033 GTTCCTTACCCGGTTTGGCT 60.251 55.000 0.00 0.00 35.87 4.75
1820 2461 0.838987 TCCTTACCCGGTTTGGCTCT 60.839 55.000 0.00 0.00 35.87 4.09
1830 2490 1.594331 GTTTGGCTCTTGACCTCGTT 58.406 50.000 0.00 0.00 0.00 3.85
1845 2505 1.596260 CTCGTTCATGCTGGCACATAG 59.404 52.381 0.00 0.00 38.20 2.23
1869 2529 4.155063 ACTTGCCACATCATAGCATACA 57.845 40.909 0.00 0.00 36.20 2.29
1959 2621 4.816990 GCTCAAGCGGAGGTAGAC 57.183 61.111 9.94 0.00 44.22 2.59
1981 2643 8.928270 AGACGTTTTATCTCATAAACTTCGAT 57.072 30.769 0.00 0.00 34.68 3.59
2113 3326 5.550290 ACAAGCATTAAACAAGAAATGGGG 58.450 37.500 0.00 0.00 34.37 4.96
2114 3327 4.206477 AGCATTAAACAAGAAATGGGGC 57.794 40.909 0.00 0.00 34.37 5.80
2115 3328 3.582208 AGCATTAAACAAGAAATGGGGCA 59.418 39.130 0.00 0.00 34.37 5.36
2116 3329 4.041444 AGCATTAAACAAGAAATGGGGCAA 59.959 37.500 0.00 0.00 34.37 4.52
2117 3330 4.392754 GCATTAAACAAGAAATGGGGCAAG 59.607 41.667 0.00 0.00 34.37 4.01
2118 3331 5.550290 CATTAAACAAGAAATGGGGCAAGT 58.450 37.500 0.00 0.00 30.93 3.16
2119 3332 5.622346 TTAAACAAGAAATGGGGCAAGTT 57.378 34.783 0.00 0.00 0.00 2.66
2120 3333 4.502105 AAACAAGAAATGGGGCAAGTTT 57.498 36.364 0.00 0.00 0.00 2.66
2121 3334 4.502105 AACAAGAAATGGGGCAAGTTTT 57.498 36.364 0.00 0.00 0.00 2.43
2122 3335 4.502105 ACAAGAAATGGGGCAAGTTTTT 57.498 36.364 0.00 0.00 0.00 1.94
2162 3375 1.999648 AGCAGCCAAATCCTTGTTGA 58.000 45.000 0.00 0.00 0.00 3.18
2189 4012 5.503002 TGCCTGATCATGAGAAATTCTGAA 58.497 37.500 0.00 0.00 0.00 3.02
2192 4015 6.973474 GCCTGATCATGAGAAATTCTGAAAAG 59.027 38.462 0.00 0.00 0.00 2.27
2255 4078 6.763355 TCTTACACTTCTCTCAAGCAAGAAT 58.237 36.000 0.00 0.00 31.45 2.40
2349 4197 1.000896 GGCTGCAAGTACCATGGGT 60.001 57.895 18.09 4.30 40.16 4.51
2384 4232 3.210227 TGCCACTTCAAATTTCGTCTCA 58.790 40.909 0.00 0.00 0.00 3.27
2393 4241 6.486253 TCAAATTTCGTCTCAAATCTCCAG 57.514 37.500 0.00 0.00 0.00 3.86
2483 4332 8.038944 TGTACAAGATATTACACTTGGAAGTCC 58.961 37.037 0.00 0.00 45.03 3.85
2517 4520 4.346730 TCTTGTCATCATCCCAGCAAAAT 58.653 39.130 0.00 0.00 0.00 1.82
2536 4539 6.519721 GCAAAATGATCTCCTATAGCCTCAGA 60.520 42.308 0.00 0.00 0.00 3.27
2642 6357 4.323868 GGATGAGGAAGCTAAAGAACCAGT 60.324 45.833 0.00 0.00 0.00 4.00
2712 6427 6.060136 TCTCATGGTCAAGAATCAATGATCC 58.940 40.000 0.00 0.00 0.00 3.36
2800 6515 6.369890 CGCTGTCATGGCTAATACTGAAATAT 59.630 38.462 0.00 0.00 0.00 1.28
2822 6537 6.630444 ATGATGAAGATAAACCACATCTGC 57.370 37.500 0.00 0.00 38.36 4.26
2872 6587 3.074412 GCTACAACATGTTGCACCTACT 58.926 45.455 33.23 17.45 45.86 2.57
3142 6858 7.523293 TTGTCAAGAATCAATGCTCCTTTTA 57.477 32.000 0.00 0.00 0.00 1.52
3327 7043 5.698832 CATTAAACAAGAAATGTGGCGAGA 58.301 37.500 0.00 0.00 42.99 4.04
3388 7104 9.234384 GCATGATAATGAGAAATTCTGACAAAG 57.766 33.333 0.00 0.00 0.00 2.77
3605 7775 2.900046 GCTGCAACATTTTGTACGTACG 59.100 45.455 20.18 15.01 34.90 3.67
4128 8519 7.138431 CTCAGCTGTGATCACCTATCTGGTT 62.138 48.000 22.85 0.60 38.50 3.67
4267 8658 7.054124 CCATTAAACTCCCTGTAAGAGCAATA 58.946 38.462 0.00 0.00 34.07 1.90
4658 9049 4.103627 TCAGTGTATGATCATGCTCCCATT 59.896 41.667 22.15 3.05 31.12 3.16
4680 9071 3.560636 ACTCCCTCCGTTCCATAATTG 57.439 47.619 0.00 0.00 0.00 2.32
4983 9374 2.437359 GGAGAAGGCTGCATGCGT 60.437 61.111 14.09 0.00 44.05 5.24
5349 9740 5.596772 TCATGTCATCGTTCCTACATCCTAA 59.403 40.000 0.00 0.00 30.32 2.69
5432 9824 0.458669 GCTTGATCCCAATGCACTGG 59.541 55.000 7.36 7.36 36.10 4.00
5599 9992 7.529880 AAAACAAGAAAAACTGAAGATGCAG 57.470 32.000 0.00 0.00 41.63 4.41
5706 10099 3.055580 CAGGAGATAGGAGCGGCC 58.944 66.667 0.00 0.00 0.00 6.13
5771 10164 4.202388 TGGGTAAGTTCCTTAGTGGTCAAC 60.202 45.833 0.00 0.00 37.07 3.18
6145 10568 1.134098 CATGGACAAAGGGATAGGCGT 60.134 52.381 0.00 0.00 0.00 5.68
6170 10593 2.489255 CCAGATACCTTCCGCCTCTCTA 60.489 54.545 0.00 0.00 0.00 2.43
6527 10950 1.889573 GAAGCTGATAGCACCGGCC 60.890 63.158 0.00 0.00 45.56 6.13
6528 10951 2.593468 GAAGCTGATAGCACCGGCCA 62.593 60.000 0.00 0.00 45.56 5.36
6529 10952 1.987807 AAGCTGATAGCACCGGCCAT 61.988 55.000 0.00 0.00 45.56 4.40
6596 11019 2.672961 TACAGCTAGCGAACAATGCT 57.327 45.000 9.55 0.00 46.29 3.79
6685 11108 1.321474 TTCTTCTTGTTGCTGGCAGG 58.679 50.000 17.64 0.00 0.00 4.85
6689 11112 0.756442 TCTTGTTGCTGGCAGGCTTT 60.756 50.000 17.64 0.00 0.00 3.51
6693 11116 1.152694 TTGCTGGCAGGCTTTGAGT 60.153 52.632 17.64 0.00 0.00 3.41
6695 11118 0.756442 TGCTGGCAGGCTTTGAGTTT 60.756 50.000 17.64 0.00 0.00 2.66
6762 11185 1.724582 GCAACGGAGCAGTGGTGTTT 61.725 55.000 0.00 0.00 0.00 2.83
6927 11353 6.645790 AATCTCCACCAATCAATATTCAGC 57.354 37.500 0.00 0.00 0.00 4.26
6952 11378 1.446907 CTTGACAGCACCAGTGATCC 58.553 55.000 0.99 0.00 0.00 3.36
7047 11760 7.491048 TCATCAATAGATTCGTCGAACATCAAA 59.509 33.333 10.39 0.00 30.20 2.69
7063 11776 4.253685 CATCAAAGTGGAATCGTGGTAGT 58.746 43.478 0.00 0.00 0.00 2.73
7069 11783 1.066430 TGGAATCGTGGTAGTTGGAGC 60.066 52.381 0.00 0.00 0.00 4.70
7073 11787 2.380084 TCGTGGTAGTTGGAGCAATC 57.620 50.000 0.00 0.00 0.00 2.67
7135 11853 4.722535 AGCCTCCCCGCTGAAGGA 62.723 66.667 1.55 0.00 37.82 3.36
7199 11918 4.520179 GCCGGAGAGTAAAAGGGATAAAA 58.480 43.478 5.05 0.00 0.00 1.52
7219 11938 1.442769 GCAGTTCAGATGCGGAGAAA 58.557 50.000 0.00 0.00 33.31 2.52
7327 12047 1.153823 GCGTGCGTGAGATGGTAGT 60.154 57.895 0.00 0.00 0.00 2.73
7557 12309 2.216881 TCCCCCTCACCAATCAATCAT 58.783 47.619 0.00 0.00 0.00 2.45
7559 12311 3.395607 TCCCCCTCACCAATCAATCATAG 59.604 47.826 0.00 0.00 0.00 2.23
7678 12450 2.508887 GCTGAGCTGCGTCTGAGG 60.509 66.667 0.00 0.00 0.00 3.86
7684 12456 4.363990 CTGCGTCTGAGGCACGGT 62.364 66.667 19.93 0.00 37.74 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.720309 TCATCACTGATAGACCATTCCAAAA 58.280 36.000 0.00 0.00 0.00 2.44
11 12 5.955961 TCATCACTGATAGACCATTCCAA 57.044 39.130 0.00 0.00 0.00 3.53
12 13 5.955961 TTCATCACTGATAGACCATTCCA 57.044 39.130 0.00 0.00 0.00 3.53
13 14 6.769822 ACAATTCATCACTGATAGACCATTCC 59.230 38.462 0.00 0.00 0.00 3.01
14 15 7.496920 TGACAATTCATCACTGATAGACCATTC 59.503 37.037 0.00 0.00 0.00 2.67
15 16 7.341030 TGACAATTCATCACTGATAGACCATT 58.659 34.615 0.00 0.00 0.00 3.16
16 17 6.892485 TGACAATTCATCACTGATAGACCAT 58.108 36.000 0.00 0.00 0.00 3.55
17 18 6.298441 TGACAATTCATCACTGATAGACCA 57.702 37.500 0.00 0.00 0.00 4.02
53 54 9.419297 CGCTTAGTGGATTTTAGCTTGTATATA 57.581 33.333 0.00 0.00 0.00 0.86
54 55 8.148351 TCGCTTAGTGGATTTTAGCTTGTATAT 58.852 33.333 0.00 0.00 0.00 0.86
55 56 7.494211 TCGCTTAGTGGATTTTAGCTTGTATA 58.506 34.615 0.00 0.00 0.00 1.47
56 57 6.346096 TCGCTTAGTGGATTTTAGCTTGTAT 58.654 36.000 0.00 0.00 0.00 2.29
57 58 5.726397 TCGCTTAGTGGATTTTAGCTTGTA 58.274 37.500 0.00 0.00 0.00 2.41
58 59 4.575885 TCGCTTAGTGGATTTTAGCTTGT 58.424 39.130 0.00 0.00 0.00 3.16
59 60 5.324697 GTTCGCTTAGTGGATTTTAGCTTG 58.675 41.667 0.00 0.00 0.00 4.01
60 61 4.395231 GGTTCGCTTAGTGGATTTTAGCTT 59.605 41.667 0.00 0.00 0.00 3.74
61 62 3.939592 GGTTCGCTTAGTGGATTTTAGCT 59.060 43.478 0.00 0.00 0.00 3.32
62 63 3.687698 TGGTTCGCTTAGTGGATTTTAGC 59.312 43.478 0.00 0.00 0.00 3.09
63 64 6.436843 AATGGTTCGCTTAGTGGATTTTAG 57.563 37.500 0.00 0.00 0.00 1.85
64 65 6.349777 CCAAATGGTTCGCTTAGTGGATTTTA 60.350 38.462 0.00 0.00 0.00 1.52
65 66 5.469479 CAAATGGTTCGCTTAGTGGATTTT 58.531 37.500 0.00 0.00 0.00 1.82
66 67 4.082245 CCAAATGGTTCGCTTAGTGGATTT 60.082 41.667 0.00 0.00 0.00 2.17
67 68 3.443681 CCAAATGGTTCGCTTAGTGGATT 59.556 43.478 0.00 0.00 0.00 3.01
68 69 3.016736 CCAAATGGTTCGCTTAGTGGAT 58.983 45.455 0.00 0.00 0.00 3.41
69 70 2.432444 CCAAATGGTTCGCTTAGTGGA 58.568 47.619 0.00 0.00 0.00 4.02
70 71 2.919666 CCAAATGGTTCGCTTAGTGG 57.080 50.000 0.00 0.00 0.00 4.00
127 128 9.208022 CCTTGCTACGAAATCTTATCATATGAA 57.792 33.333 9.99 0.00 0.00 2.57
128 129 7.331934 GCCTTGCTACGAAATCTTATCATATGA 59.668 37.037 8.10 8.10 0.00 2.15
129 130 7.118245 TGCCTTGCTACGAAATCTTATCATATG 59.882 37.037 0.00 0.00 0.00 1.78
130 131 7.161404 TGCCTTGCTACGAAATCTTATCATAT 58.839 34.615 0.00 0.00 0.00 1.78
131 132 6.521162 TGCCTTGCTACGAAATCTTATCATA 58.479 36.000 0.00 0.00 0.00 2.15
132 133 5.368145 TGCCTTGCTACGAAATCTTATCAT 58.632 37.500 0.00 0.00 0.00 2.45
133 134 4.765273 TGCCTTGCTACGAAATCTTATCA 58.235 39.130 0.00 0.00 0.00 2.15
134 135 5.931441 ATGCCTTGCTACGAAATCTTATC 57.069 39.130 0.00 0.00 0.00 1.75
135 136 6.699575 AAATGCCTTGCTACGAAATCTTAT 57.300 33.333 0.00 0.00 0.00 1.73
136 137 7.618502 TTAAATGCCTTGCTACGAAATCTTA 57.381 32.000 0.00 0.00 0.00 2.10
137 138 6.509418 TTAAATGCCTTGCTACGAAATCTT 57.491 33.333 0.00 0.00 0.00 2.40
138 139 6.699575 ATTAAATGCCTTGCTACGAAATCT 57.300 33.333 0.00 0.00 0.00 2.40
139 140 6.972328 TGAATTAAATGCCTTGCTACGAAATC 59.028 34.615 0.00 0.00 0.00 2.17
140 141 6.862209 TGAATTAAATGCCTTGCTACGAAAT 58.138 32.000 0.00 0.00 0.00 2.17
141 142 6.260870 TGAATTAAATGCCTTGCTACGAAA 57.739 33.333 0.00 0.00 0.00 3.46
142 143 5.888691 TGAATTAAATGCCTTGCTACGAA 57.111 34.783 0.00 0.00 0.00 3.85
143 144 7.443879 TGATATGAATTAAATGCCTTGCTACGA 59.556 33.333 0.00 0.00 0.00 3.43
144 145 7.584108 TGATATGAATTAAATGCCTTGCTACG 58.416 34.615 0.00 0.00 0.00 3.51
174 175 9.651913 ACAAAGTTGTTAATCAAATGACTTTGT 57.348 25.926 19.89 19.89 46.89 2.83
182 183 9.965824 CCAAGTAGACAAAGTTGTTAATCAAAT 57.034 29.630 0.00 0.00 42.43 2.32
183 184 7.918562 GCCAAGTAGACAAAGTTGTTAATCAAA 59.081 33.333 0.00 0.00 42.43 2.69
184 185 7.422399 GCCAAGTAGACAAAGTTGTTAATCAA 58.578 34.615 0.00 0.00 42.43 2.57
185 186 6.016610 GGCCAAGTAGACAAAGTTGTTAATCA 60.017 38.462 0.00 0.00 42.43 2.57
186 187 6.379386 GGCCAAGTAGACAAAGTTGTTAATC 58.621 40.000 0.00 0.00 42.43 1.75
187 188 5.243060 GGGCCAAGTAGACAAAGTTGTTAAT 59.757 40.000 4.39 0.00 42.43 1.40
188 189 4.581409 GGGCCAAGTAGACAAAGTTGTTAA 59.419 41.667 4.39 0.00 42.43 2.01
189 190 4.139038 GGGCCAAGTAGACAAAGTTGTTA 58.861 43.478 4.39 0.00 42.43 2.41
190 191 2.956333 GGGCCAAGTAGACAAAGTTGTT 59.044 45.455 4.39 0.00 42.43 2.83
191 192 2.092103 TGGGCCAAGTAGACAAAGTTGT 60.092 45.455 2.13 0.00 45.65 3.32
192 193 2.582052 TGGGCCAAGTAGACAAAGTTG 58.418 47.619 2.13 0.00 0.00 3.16
193 194 3.525800 ATGGGCCAAGTAGACAAAGTT 57.474 42.857 11.89 0.00 0.00 2.66
194 195 4.018415 ACATATGGGCCAAGTAGACAAAGT 60.018 41.667 11.89 0.00 0.00 2.66
195 196 4.336433 CACATATGGGCCAAGTAGACAAAG 59.664 45.833 11.89 0.00 0.00 2.77
196 197 4.018870 TCACATATGGGCCAAGTAGACAAA 60.019 41.667 11.89 0.00 0.00 2.83
197 198 3.521531 TCACATATGGGCCAAGTAGACAA 59.478 43.478 11.89 0.00 0.00 3.18
198 199 3.111484 TCACATATGGGCCAAGTAGACA 58.889 45.455 11.89 0.00 0.00 3.41
199 200 3.838244 TCACATATGGGCCAAGTAGAC 57.162 47.619 11.89 0.00 0.00 2.59
200 201 4.853468 TTTCACATATGGGCCAAGTAGA 57.147 40.909 11.89 2.26 0.00 2.59
201 202 7.765695 ATAATTTCACATATGGGCCAAGTAG 57.234 36.000 11.89 3.43 0.00 2.57
202 203 7.782168 TCAATAATTTCACATATGGGCCAAGTA 59.218 33.333 11.89 0.00 0.00 2.24
203 204 6.610830 TCAATAATTTCACATATGGGCCAAGT 59.389 34.615 11.89 7.11 0.00 3.16
204 205 6.925165 GTCAATAATTTCACATATGGGCCAAG 59.075 38.462 11.89 6.36 0.00 3.61
205 206 6.382282 TGTCAATAATTTCACATATGGGCCAA 59.618 34.615 11.89 0.00 0.00 4.52
206 207 5.896106 TGTCAATAATTTCACATATGGGCCA 59.104 36.000 9.61 9.61 0.00 5.36
207 208 6.403866 TGTCAATAATTTCACATATGGGCC 57.596 37.500 7.80 0.00 0.00 5.80
208 209 8.891671 ATTTGTCAATAATTTCACATATGGGC 57.108 30.769 7.80 0.00 0.00 5.36
235 236 9.399099 GCTTGGAGCATGTCTAGCTATAGCTAA 62.399 44.444 29.51 18.63 45.83 3.09
236 237 8.019448 GCTTGGAGCATGTCTAGCTATAGCTA 62.019 46.154 28.40 28.40 45.29 3.32
238 239 4.493547 CTTGGAGCATGTCTAGCTATAGC 58.506 47.826 17.33 17.33 43.58 2.97
239 240 4.493547 GCTTGGAGCATGTCTAGCTATAG 58.506 47.826 0.00 0.00 43.58 1.31
240 241 3.057245 CGCTTGGAGCATGTCTAGCTATA 60.057 47.826 0.00 0.00 43.58 1.31
241 242 2.288702 CGCTTGGAGCATGTCTAGCTAT 60.289 50.000 0.00 0.00 43.58 2.97
242 243 1.067669 CGCTTGGAGCATGTCTAGCTA 59.932 52.381 13.41 0.00 43.58 3.32
243 244 0.179089 CGCTTGGAGCATGTCTAGCT 60.179 55.000 13.41 0.00 46.82 3.32
244 245 0.460987 ACGCTTGGAGCATGTCTAGC 60.461 55.000 0.00 2.32 42.58 3.42
245 246 1.284657 CACGCTTGGAGCATGTCTAG 58.715 55.000 0.00 0.00 42.58 2.43
246 247 0.608130 ACACGCTTGGAGCATGTCTA 59.392 50.000 0.00 0.00 45.22 2.59
247 248 0.952497 CACACGCTTGGAGCATGTCT 60.952 55.000 0.00 0.00 45.22 3.41
248 249 1.230635 ACACACGCTTGGAGCATGTC 61.231 55.000 0.00 0.00 45.22 3.06
250 251 1.208358 CACACACGCTTGGAGCATG 59.792 57.895 0.50 0.00 42.58 4.06
251 252 1.227943 ACACACACGCTTGGAGCAT 60.228 52.632 0.50 0.00 42.58 3.79
252 253 2.179547 CACACACACGCTTGGAGCA 61.180 57.895 0.50 0.00 42.58 4.26
253 254 2.180204 ACACACACACGCTTGGAGC 61.180 57.895 0.00 0.00 38.02 4.70
254 255 1.089481 ACACACACACACGCTTGGAG 61.089 55.000 0.00 0.00 0.00 3.86
255 256 1.078778 ACACACACACACGCTTGGA 60.079 52.632 0.00 0.00 0.00 3.53
256 257 1.062365 CACACACACACACGCTTGG 59.938 57.895 0.00 0.00 0.00 3.61
257 258 0.521034 CACACACACACACACGCTTG 60.521 55.000 0.00 0.00 0.00 4.01
258 259 0.953471 ACACACACACACACACGCTT 60.953 50.000 0.00 0.00 0.00 4.68
259 260 1.375396 ACACACACACACACACGCT 60.375 52.632 0.00 0.00 0.00 5.07
260 261 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
261 262 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
262 263 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
263 264 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
264 265 1.438651 AGACACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
265 266 2.232696 AGTAGACACACACACACACACA 59.767 45.455 0.00 0.00 0.00 3.72
266 267 2.603110 CAGTAGACACACACACACACAC 59.397 50.000 0.00 0.00 0.00 3.82
267 268 2.232696 ACAGTAGACACACACACACACA 59.767 45.455 0.00 0.00 0.00 3.72
268 269 2.858344 GACAGTAGACACACACACACAC 59.142 50.000 0.00 0.00 0.00 3.82
269 270 2.758423 AGACAGTAGACACACACACACA 59.242 45.455 0.00 0.00 0.00 3.72
270 271 3.438297 AGACAGTAGACACACACACAC 57.562 47.619 0.00 0.00 0.00 3.82
271 272 3.430236 CCAAGACAGTAGACACACACACA 60.430 47.826 0.00 0.00 0.00 3.72
272 273 3.123804 CCAAGACAGTAGACACACACAC 58.876 50.000 0.00 0.00 0.00 3.82
273 274 2.483013 GCCAAGACAGTAGACACACACA 60.483 50.000 0.00 0.00 0.00 3.72
274 275 2.135933 GCCAAGACAGTAGACACACAC 58.864 52.381 0.00 0.00 0.00 3.82
275 276 1.070134 GGCCAAGACAGTAGACACACA 59.930 52.381 0.00 0.00 0.00 3.72
276 277 1.070134 TGGCCAAGACAGTAGACACAC 59.930 52.381 0.61 0.00 0.00 3.82
277 278 1.344438 CTGGCCAAGACAGTAGACACA 59.656 52.381 7.01 0.00 33.29 3.72
278 279 1.338200 CCTGGCCAAGACAGTAGACAC 60.338 57.143 7.01 0.00 36.87 3.67
279 280 0.976641 CCTGGCCAAGACAGTAGACA 59.023 55.000 7.01 0.00 36.87 3.41
280 281 0.391793 GCCTGGCCAAGACAGTAGAC 60.392 60.000 7.01 0.00 36.87 2.59
281 282 0.545309 AGCCTGGCCAAGACAGTAGA 60.545 55.000 16.57 0.00 36.87 2.59
282 283 0.326264 AAGCCTGGCCAAGACAGTAG 59.674 55.000 16.57 0.00 36.87 2.57
283 284 1.555075 CTAAGCCTGGCCAAGACAGTA 59.445 52.381 16.57 0.00 36.87 2.74
284 285 0.326264 CTAAGCCTGGCCAAGACAGT 59.674 55.000 16.57 0.00 36.87 3.55
285 286 0.615331 TCTAAGCCTGGCCAAGACAG 59.385 55.000 16.57 0.42 38.64 3.51
286 287 1.289160 ATCTAAGCCTGGCCAAGACA 58.711 50.000 19.40 2.94 0.00 3.41
287 288 3.071602 TCATATCTAAGCCTGGCCAAGAC 59.928 47.826 19.40 0.00 0.00 3.01
288 289 3.317406 TCATATCTAAGCCTGGCCAAGA 58.683 45.455 16.57 18.23 0.00 3.02
289 290 3.777106 TCATATCTAAGCCTGGCCAAG 57.223 47.619 16.57 13.19 0.00 3.61
290 291 3.748668 GCTTCATATCTAAGCCTGGCCAA 60.749 47.826 16.57 2.32 42.85 4.52
291 292 2.224621 GCTTCATATCTAAGCCTGGCCA 60.225 50.000 16.57 4.71 42.85 5.36
292 293 2.431454 GCTTCATATCTAAGCCTGGCC 58.569 52.381 16.57 0.00 42.85 5.36
299 300 9.442047 AAATTTCCGGATAGCTTCATATCTAAG 57.558 33.333 4.15 0.00 33.47 2.18
300 301 9.219603 CAAATTTCCGGATAGCTTCATATCTAA 57.780 33.333 4.15 0.00 33.47 2.10
301 302 8.375506 ACAAATTTCCGGATAGCTTCATATCTA 58.624 33.333 4.15 0.00 33.47 1.98
302 303 7.173907 CACAAATTTCCGGATAGCTTCATATCT 59.826 37.037 4.15 0.00 33.47 1.98
303 304 7.041098 ACACAAATTTCCGGATAGCTTCATATC 60.041 37.037 4.15 0.00 0.00 1.63
304 305 6.772716 ACACAAATTTCCGGATAGCTTCATAT 59.227 34.615 4.15 0.00 0.00 1.78
305 306 6.038161 CACACAAATTTCCGGATAGCTTCATA 59.962 38.462 4.15 0.00 0.00 2.15
306 307 4.949856 ACACAAATTTCCGGATAGCTTCAT 59.050 37.500 4.15 0.00 0.00 2.57
307 308 4.155826 CACACAAATTTCCGGATAGCTTCA 59.844 41.667 4.15 0.00 0.00 3.02
308 309 4.438744 CCACACAAATTTCCGGATAGCTTC 60.439 45.833 4.15 0.00 0.00 3.86
309 310 3.443681 CCACACAAATTTCCGGATAGCTT 59.556 43.478 4.15 0.00 0.00 3.74
310 311 3.016736 CCACACAAATTTCCGGATAGCT 58.983 45.455 4.15 0.00 0.00 3.32
311 312 2.479560 GCCACACAAATTTCCGGATAGC 60.480 50.000 4.15 0.00 0.00 2.97
312 313 2.752354 TGCCACACAAATTTCCGGATAG 59.248 45.455 4.15 0.00 0.00 2.08
313 314 2.490115 GTGCCACACAAATTTCCGGATA 59.510 45.455 4.15 0.00 34.08 2.59
314 315 1.272212 GTGCCACACAAATTTCCGGAT 59.728 47.619 4.15 0.00 34.08 4.18
315 316 0.671251 GTGCCACACAAATTTCCGGA 59.329 50.000 0.00 0.00 34.08 5.14
316 317 0.387202 TGTGCCACACAAATTTCCGG 59.613 50.000 0.00 0.00 41.69 5.14
317 318 3.955291 TGTGCCACACAAATTTCCG 57.045 47.368 0.00 0.00 41.69 4.30
341 342 5.450412 GCCAAGATATCGATGAAGCCAAAAA 60.450 40.000 8.54 0.00 0.00 1.94
342 343 4.036734 GCCAAGATATCGATGAAGCCAAAA 59.963 41.667 8.54 0.00 0.00 2.44
343 344 3.565482 GCCAAGATATCGATGAAGCCAAA 59.435 43.478 8.54 0.00 0.00 3.28
344 345 3.141398 GCCAAGATATCGATGAAGCCAA 58.859 45.455 8.54 0.00 0.00 4.52
345 346 2.550855 GGCCAAGATATCGATGAAGCCA 60.551 50.000 8.54 0.00 37.80 4.75
346 347 2.079925 GGCCAAGATATCGATGAAGCC 58.920 52.381 8.54 7.95 0.00 4.35
347 348 2.079925 GGGCCAAGATATCGATGAAGC 58.920 52.381 8.54 2.33 0.00 3.86
348 349 2.616510 GGGGGCCAAGATATCGATGAAG 60.617 54.545 8.54 0.00 0.00 3.02
349 350 1.351017 GGGGGCCAAGATATCGATGAA 59.649 52.381 8.54 0.00 0.00 2.57
350 351 0.984230 GGGGGCCAAGATATCGATGA 59.016 55.000 8.54 0.00 0.00 2.92
351 352 3.558674 GGGGGCCAAGATATCGATG 57.441 57.895 8.54 1.00 0.00 3.84
366 367 4.660771 AGTCAGGATTTAGACATAAGGGGG 59.339 45.833 0.00 0.00 37.23 5.40
367 368 5.896073 AGTCAGGATTTAGACATAAGGGG 57.104 43.478 0.00 0.00 37.23 4.79
368 369 5.986135 CGAAGTCAGGATTTAGACATAAGGG 59.014 44.000 0.00 0.00 37.23 3.95
369 370 5.463724 GCGAAGTCAGGATTTAGACATAAGG 59.536 44.000 0.00 0.00 37.23 2.69
370 371 5.463724 GGCGAAGTCAGGATTTAGACATAAG 59.536 44.000 0.00 0.00 37.23 1.73
371 372 5.357257 GGCGAAGTCAGGATTTAGACATAA 58.643 41.667 0.00 0.00 37.23 1.90
372 373 4.202223 GGGCGAAGTCAGGATTTAGACATA 60.202 45.833 0.00 0.00 37.23 2.29
373 374 3.432326 GGGCGAAGTCAGGATTTAGACAT 60.432 47.826 0.00 0.00 37.23 3.06
374 375 2.093658 GGGCGAAGTCAGGATTTAGACA 60.094 50.000 0.00 0.00 37.23 3.41
375 376 2.168728 AGGGCGAAGTCAGGATTTAGAC 59.831 50.000 0.00 0.00 35.02 2.59
376 377 2.467880 AGGGCGAAGTCAGGATTTAGA 58.532 47.619 0.00 0.00 0.00 2.10
377 378 2.939103 CAAGGGCGAAGTCAGGATTTAG 59.061 50.000 0.00 0.00 0.00 1.85
378 379 2.569853 TCAAGGGCGAAGTCAGGATTTA 59.430 45.455 0.00 0.00 0.00 1.40
379 380 1.351017 TCAAGGGCGAAGTCAGGATTT 59.649 47.619 0.00 0.00 0.00 2.17
380 381 0.984230 TCAAGGGCGAAGTCAGGATT 59.016 50.000 0.00 0.00 0.00 3.01
381 382 1.134280 CATCAAGGGCGAAGTCAGGAT 60.134 52.381 0.00 0.00 0.00 3.24
382 383 0.250234 CATCAAGGGCGAAGTCAGGA 59.750 55.000 0.00 0.00 0.00 3.86
383 384 0.250234 TCATCAAGGGCGAAGTCAGG 59.750 55.000 0.00 0.00 0.00 3.86
384 385 2.322355 ATCATCAAGGGCGAAGTCAG 57.678 50.000 0.00 0.00 0.00 3.51
385 386 2.499693 TGTATCATCAAGGGCGAAGTCA 59.500 45.455 0.00 0.00 0.00 3.41
386 387 3.179443 TGTATCATCAAGGGCGAAGTC 57.821 47.619 0.00 0.00 0.00 3.01
387 388 3.495100 GGATGTATCATCAAGGGCGAAGT 60.495 47.826 11.08 0.00 0.00 3.01
388 389 3.070018 GGATGTATCATCAAGGGCGAAG 58.930 50.000 11.08 0.00 0.00 3.79
389 390 2.547855 CGGATGTATCATCAAGGGCGAA 60.548 50.000 11.08 0.00 0.00 4.70
390 391 1.000843 CGGATGTATCATCAAGGGCGA 59.999 52.381 11.08 0.00 0.00 5.54
391 392 1.432514 CGGATGTATCATCAAGGGCG 58.567 55.000 11.08 2.60 0.00 6.13
392 393 1.160137 GCGGATGTATCATCAAGGGC 58.840 55.000 11.08 5.66 0.00 5.19
393 394 2.224378 ACTGCGGATGTATCATCAAGGG 60.224 50.000 0.00 2.70 0.00 3.95
394 395 3.117491 ACTGCGGATGTATCATCAAGG 57.883 47.619 0.00 2.46 0.00 3.61
395 396 4.571984 TGAAACTGCGGATGTATCATCAAG 59.428 41.667 0.00 7.91 0.00 3.02
396 397 4.512484 TGAAACTGCGGATGTATCATCAA 58.488 39.130 0.00 0.00 0.00 2.57
397 398 4.135747 TGAAACTGCGGATGTATCATCA 57.864 40.909 0.00 0.00 0.00 3.07
398 399 6.974932 ATATGAAACTGCGGATGTATCATC 57.025 37.500 0.00 1.60 0.00 2.92
542 543 3.304726 GCTGGTTTGAACTTTGGAGTAGC 60.305 47.826 0.00 0.00 34.21 3.58
587 588 2.049063 AGCTTGTCGGTCGCTGAC 60.049 61.111 10.66 10.66 39.93 3.51
595 596 2.113139 ACAACCCCAGCTTGTCGG 59.887 61.111 0.00 0.00 0.00 4.79
609 610 4.966787 GAACCAGCCCGGCCACAA 62.967 66.667 5.55 0.00 39.03 3.33
649 651 3.036577 GATCCCGCCGATCGTGTA 58.963 61.111 15.09 0.00 38.23 2.90
676 692 0.108089 GTGGCGGGTGGTTTGTTTTT 60.108 50.000 0.00 0.00 0.00 1.94
702 730 3.056458 CATATAGACCCCGCGGCA 58.944 61.111 22.85 1.33 0.00 5.69
709 737 0.666577 GTGACGCCGCATATAGACCC 60.667 60.000 0.00 0.00 0.00 4.46
718 746 1.529152 TTTCTCTAGGTGACGCCGCA 61.529 55.000 0.00 0.00 43.70 5.69
759 790 8.031864 AGCTTAATCTATAGATCATTCACGTGG 58.968 37.037 17.00 0.00 32.75 4.94
838 886 2.211250 AGCTGCAAACTCATGGACAT 57.789 45.000 1.02 0.00 0.00 3.06
930 988 6.177610 TCTACAACCCTGGCTACTTTTATTG 58.822 40.000 0.00 0.00 0.00 1.90
938 999 1.757699 CTCCTCTACAACCCTGGCTAC 59.242 57.143 0.00 0.00 0.00 3.58
1020 1089 1.213926 ACAGCATTCCCTCTCCAATCC 59.786 52.381 0.00 0.00 0.00 3.01
1047 1116 0.182061 TGATGCCTCCATGCTTCCTC 59.818 55.000 0.00 0.00 35.25 3.71
1101 1170 9.521841 AGCTATAGTATGACAGAAACAGCTATA 57.478 33.333 0.84 0.00 34.08 1.31
1104 1173 6.723298 AGCTATAGTATGACAGAAACAGCT 57.277 37.500 0.84 0.00 0.00 4.24
1105 1174 6.584563 GCTAGCTATAGTATGACAGAAACAGC 59.415 42.308 7.70 0.00 0.00 4.40
1106 1175 7.040062 AGGCTAGCTATAGTATGACAGAAACAG 60.040 40.741 15.72 0.00 0.00 3.16
1229 1315 8.501580 CATGTGTAATATTATCTCAAGCAGTGG 58.498 37.037 0.00 0.00 0.00 4.00
1275 1361 3.872511 TCGGAGGCTGAAAATAACGTA 57.127 42.857 0.00 0.00 0.00 3.57
1276 1362 2.754946 TCGGAGGCTGAAAATAACGT 57.245 45.000 0.00 0.00 0.00 3.99
1278 1364 3.454375 TCGATCGGAGGCTGAAAATAAC 58.546 45.455 16.41 0.00 0.00 1.89
1279 1365 3.812156 TCGATCGGAGGCTGAAAATAA 57.188 42.857 16.41 0.00 0.00 1.40
1281 1367 2.158900 ACATCGATCGGAGGCTGAAAAT 60.159 45.455 16.41 0.00 0.00 1.82
1283 1369 0.824109 ACATCGATCGGAGGCTGAAA 59.176 50.000 16.41 0.00 0.00 2.69
1285 1371 0.824109 AAACATCGATCGGAGGCTGA 59.176 50.000 16.41 0.00 0.00 4.26
1328 1414 1.202770 TCCCTGCTCTGATCGATCGTA 60.203 52.381 20.03 9.79 0.00 3.43
1344 1430 6.146673 CGAAGAACACTACGTTTTATTTCCCT 59.853 38.462 0.00 0.00 38.19 4.20
1345 1431 6.301861 CGAAGAACACTACGTTTTATTTCCC 58.698 40.000 0.00 0.00 38.19 3.97
1346 1432 5.787062 GCGAAGAACACTACGTTTTATTTCC 59.213 40.000 0.00 0.00 38.19 3.13
1347 1433 6.357198 TGCGAAGAACACTACGTTTTATTTC 58.643 36.000 0.00 0.00 38.19 2.17
1348 1434 6.289745 TGCGAAGAACACTACGTTTTATTT 57.710 33.333 0.00 0.00 38.19 1.40
1349 1435 5.910637 TGCGAAGAACACTACGTTTTATT 57.089 34.783 0.00 0.00 38.19 1.40
1350 1436 5.636121 TGATGCGAAGAACACTACGTTTTAT 59.364 36.000 0.00 0.00 38.19 1.40
1351 1437 4.983538 TGATGCGAAGAACACTACGTTTTA 59.016 37.500 0.00 0.00 38.19 1.52
1352 1438 3.805422 TGATGCGAAGAACACTACGTTTT 59.195 39.130 0.00 0.00 38.19 2.43
1353 1439 3.386486 TGATGCGAAGAACACTACGTTT 58.614 40.909 0.00 0.00 38.19 3.60
1354 1440 2.987149 CTGATGCGAAGAACACTACGTT 59.013 45.455 0.00 0.00 41.86 3.99
1356 1442 2.863739 TCTGATGCGAAGAACACTACG 58.136 47.619 0.00 0.00 0.00 3.51
1381 1569 1.673920 TGGGAAGTGCGTTTTTCACTC 59.326 47.619 0.00 0.00 43.36 3.51
1398 1586 2.484287 ATTTGCCTCCTGGTCGTGGG 62.484 60.000 0.00 0.00 35.27 4.61
1402 1590 4.214119 CACATAATATTTGCCTCCTGGTCG 59.786 45.833 0.00 0.00 35.27 4.79
1404 1592 3.891366 GCACATAATATTTGCCTCCTGGT 59.109 43.478 0.13 0.00 35.27 4.00
1428 1808 3.722147 AGGTAGCAAGATATTGACGCTG 58.278 45.455 3.77 0.00 34.18 5.18
1458 1839 2.080286 TCCTGTTCGCTGCTTTAGAC 57.920 50.000 0.00 0.00 0.00 2.59
1463 1844 1.518903 GCCTTTCCTGTTCGCTGCTT 61.519 55.000 0.00 0.00 0.00 3.91
1464 1845 1.968540 GCCTTTCCTGTTCGCTGCT 60.969 57.895 0.00 0.00 0.00 4.24
1466 1847 1.464997 GTTAGCCTTTCCTGTTCGCTG 59.535 52.381 0.00 0.00 0.00 5.18
1475 1856 3.689649 ACGATTGTCATGTTAGCCTTTCC 59.310 43.478 0.00 0.00 0.00 3.13
1481 1862 4.390603 TGTTGGTACGATTGTCATGTTAGC 59.609 41.667 0.00 0.00 0.00 3.09
1488 1869 5.654603 AGATAGTGTTGGTACGATTGTCA 57.345 39.130 0.00 0.00 0.00 3.58
1495 1876 4.933330 AGCATGTAGATAGTGTTGGTACG 58.067 43.478 0.00 0.00 0.00 3.67
1503 1884 6.502136 TCGATCCTTAGCATGTAGATAGTG 57.498 41.667 0.00 0.00 0.00 2.74
1575 2039 9.890629 AGCACCTATTTCTTTTTCTTTTCTTTT 57.109 25.926 0.00 0.00 0.00 2.27
1576 2040 9.890629 AAGCACCTATTTCTTTTTCTTTTCTTT 57.109 25.926 0.00 0.00 0.00 2.52
1577 2041 9.890629 AAAGCACCTATTTCTTTTTCTTTTCTT 57.109 25.926 0.00 0.00 0.00 2.52
1582 2046 9.208022 GCAATAAAGCACCTATTTCTTTTTCTT 57.792 29.630 0.00 0.00 32.85 2.52
1583 2047 8.367156 TGCAATAAAGCACCTATTTCTTTTTCT 58.633 29.630 0.00 0.00 40.11 2.52
1584 2048 8.532977 TGCAATAAAGCACCTATTTCTTTTTC 57.467 30.769 0.00 0.00 40.11 2.29
1604 2068 3.640029 GGGTCATCTTCATCCAATGCAAT 59.360 43.478 0.00 0.00 0.00 3.56
1746 2387 6.208599 GGACCAAAGATACATGACCAGAAAAA 59.791 38.462 0.00 0.00 0.00 1.94
1816 2457 0.723981 GCATGAACGAGGTCAAGAGC 59.276 55.000 0.00 0.00 0.00 4.09
1818 2459 1.338105 CCAGCATGAACGAGGTCAAGA 60.338 52.381 0.00 0.00 39.69 3.02
1820 2461 0.955428 GCCAGCATGAACGAGGTCAA 60.955 55.000 0.00 0.00 39.69 3.18
1830 2490 1.561076 AGTTCCTATGTGCCAGCATGA 59.439 47.619 0.00 0.00 39.69 3.07
1845 2505 2.368439 TGCTATGATGTGGCAAGTTCC 58.632 47.619 0.00 0.00 41.76 3.62
1885 2545 6.463614 CCCATATGTTTCTCCTCTACTTCAGG 60.464 46.154 1.24 0.00 0.00 3.86
1887 2547 5.366768 CCCCATATGTTTCTCCTCTACTTCA 59.633 44.000 1.24 0.00 0.00 3.02
2089 3302 5.997129 CCCCATTTCTTGTTTAATGCTTGTT 59.003 36.000 0.00 0.00 31.85 2.83
2090 3303 5.550290 CCCCATTTCTTGTTTAATGCTTGT 58.450 37.500 0.00 0.00 31.85 3.16
2121 3334 4.111375 TCTTTAACTTGCGCCACAAAAA 57.889 36.364 4.18 0.00 37.96 1.94
2122 3335 3.784701 TCTTTAACTTGCGCCACAAAA 57.215 38.095 4.18 0.00 37.96 2.44
2123 3336 3.701241 CTTCTTTAACTTGCGCCACAAA 58.299 40.909 4.18 0.00 37.96 2.83
2124 3337 2.542824 GCTTCTTTAACTTGCGCCACAA 60.543 45.455 4.18 0.00 36.62 3.33
2125 3338 1.001815 GCTTCTTTAACTTGCGCCACA 60.002 47.619 4.18 0.00 0.00 4.17
2126 3339 1.001815 TGCTTCTTTAACTTGCGCCAC 60.002 47.619 4.18 0.00 0.00 5.01
2127 3340 1.266718 CTGCTTCTTTAACTTGCGCCA 59.733 47.619 4.18 0.00 0.00 5.69
2128 3341 1.969103 CTGCTTCTTTAACTTGCGCC 58.031 50.000 4.18 0.00 0.00 6.53
2129 3342 1.331241 GCTGCTTCTTTAACTTGCGC 58.669 50.000 0.00 0.00 0.00 6.09
2130 3343 1.266718 TGGCTGCTTCTTTAACTTGCG 59.733 47.619 0.00 0.00 0.00 4.85
2198 4021 7.559897 GGAAAGGACCATTAATTCTTGACCATA 59.440 37.037 0.00 0.00 0.00 2.74
2211 4034 4.699994 AGAAGAGGAGGAAAGGACCATTA 58.300 43.478 0.00 0.00 0.00 1.90
2275 4108 4.804665 TGCATTTCAATATTTGCCATGACG 59.195 37.500 7.25 0.00 34.20 4.35
2280 4113 6.044046 GTCAGATGCATTTCAATATTTGCCA 58.956 36.000 0.00 0.00 34.20 4.92
2349 4197 7.575414 TTGAAGTGGCAAATTTCTAGTTACA 57.425 32.000 0.00 0.00 0.00 2.41
2378 4226 2.084610 TGTGCTGGAGATTTGAGACG 57.915 50.000 0.00 0.00 0.00 4.18
2380 4228 3.986996 TCATGTGCTGGAGATTTGAGA 57.013 42.857 0.00 0.00 0.00 3.27
2384 4232 5.733620 AATTGTTCATGTGCTGGAGATTT 57.266 34.783 0.00 0.00 0.00 2.17
2393 4241 5.574443 GGAAGCTTAGAAATTGTTCATGTGC 59.426 40.000 0.00 0.00 36.09 4.57
2447 4296 9.025020 GTGTAATATCTTGTACATGTCACTCTG 57.975 37.037 0.00 0.00 33.05 3.35
2483 4332 3.623906 ATGACAAGAGGTCCTGTCATG 57.376 47.619 19.08 5.51 46.36 3.07
2505 4354 3.967467 AGGAGATCATTTTGCTGGGAT 57.033 42.857 0.00 0.00 0.00 3.85
2506 4355 5.513788 GCTATAGGAGATCATTTTGCTGGGA 60.514 44.000 1.04 0.00 0.00 4.37
2572 4592 8.954950 AAGTCATAAACTATGTCCTGAGATTG 57.045 34.615 0.00 0.00 37.17 2.67
2642 6357 3.608796 TGCATGATCAACGAGGATTTGA 58.391 40.909 0.00 0.00 37.38 2.69
2674 6389 7.149569 TGACCATGAGATTTTGTCAGAATTC 57.850 36.000 0.00 0.00 32.56 2.17
2712 6427 9.928236 CTTGAGAAAAGTGTAAGAAGAGAAAAG 57.072 33.333 0.00 0.00 0.00 2.27
2800 6515 4.883585 GGCAGATGTGGTTTATCTTCATCA 59.116 41.667 0.00 0.00 37.80 3.07
3142 6858 8.589338 TGCTTAAGAGAAGTGTAAGAAGAAGAT 58.411 33.333 6.67 0.00 0.00 2.40
3205 6921 4.122776 GCGATAGGAGACATGACAACATT 58.877 43.478 0.00 0.00 34.15 2.71
3327 7043 5.602561 AGGATTTGGCTGGTTCTTTAACTTT 59.397 36.000 0.00 0.00 35.81 2.66
3388 7104 3.067742 CCATTGATTCTTGACCATGAGGC 59.932 47.826 0.00 0.00 39.06 4.70
3605 7775 5.963594 AGGTTGTTCTTCTACTTATCCGTC 58.036 41.667 0.00 0.00 0.00 4.79
4267 8658 7.659390 GCTACTTCACTATTAGGCTTGATTGAT 59.341 37.037 0.00 0.00 0.00 2.57
4550 8941 7.939039 TCTCTTCAATTGGTCAGTTACTGAAAT 59.061 33.333 17.25 11.13 42.46 2.17
4570 8961 2.156051 AACGGGCGGTCACTCTCTTC 62.156 60.000 0.00 0.00 0.00 2.87
4658 9049 4.472108 ACAATTATGGAACGGAGGGAGTAA 59.528 41.667 0.00 0.00 0.00 2.24
4680 9071 1.512156 AATGACCGCCCGTTGACAAC 61.512 55.000 8.34 8.34 0.00 3.32
4746 9137 9.559732 TCCACAATCACAATTATTAGATACCTG 57.440 33.333 0.00 0.00 0.00 4.00
5349 9740 6.998074 TCTAGAATTGTGTTGTTCACTTGGAT 59.002 34.615 0.00 0.00 46.27 3.41
5706 10099 2.838736 CCTTCCCCATCAACACTATCG 58.161 52.381 0.00 0.00 0.00 2.92
5771 10164 3.057033 CAGAAGGCAAGAGTTTGGGAATG 60.057 47.826 0.00 0.00 34.79 2.67
6145 10568 1.048601 GGCGGAAGGTATCTGGATCA 58.951 55.000 0.00 0.00 34.76 2.92
6170 10593 3.706600 AATGCTGTTGGGATTGCAATT 57.293 38.095 14.33 0.00 38.96 2.32
6382 10805 2.217038 GGGACACCTGCTCCTGTCA 61.217 63.158 9.47 0.00 38.89 3.58
6527 10950 0.098200 CAGCAACGATGGACTGCATG 59.902 55.000 8.65 0.00 38.58 4.06
6528 10951 1.028330 CCAGCAACGATGGACTGCAT 61.028 55.000 8.65 0.00 42.34 3.96
6529 10952 1.672030 CCAGCAACGATGGACTGCA 60.672 57.895 8.65 0.00 42.34 4.41
6596 11019 4.402528 CCATCCCCGTGCCGTGAA 62.403 66.667 0.00 0.00 0.00 3.18
6608 11031 2.190578 CACCCTCTTCCGCCATCC 59.809 66.667 0.00 0.00 0.00 3.51
6685 11108 2.125461 GAGTGCCACAAACTCAAAGC 57.875 50.000 0.00 0.00 42.98 3.51
6693 11116 3.191162 GCATAGTTGATGAGTGCCACAAA 59.809 43.478 0.00 0.00 37.82 2.83
6695 11118 2.026915 AGCATAGTTGATGAGTGCCACA 60.027 45.455 0.00 0.00 37.82 4.17
6762 11185 4.461198 TCAGAGCTATCACCGACTAATCA 58.539 43.478 0.00 0.00 0.00 2.57
7047 11760 2.233922 CTCCAACTACCACGATTCCACT 59.766 50.000 0.00 0.00 0.00 4.00
7063 11776 2.617021 GGTTCTTACCCGATTGCTCCAA 60.617 50.000 0.00 0.00 38.60 3.53
7069 11783 2.901249 ACGATGGTTCTTACCCGATTG 58.099 47.619 0.00 0.00 44.35 2.67
7073 11787 2.214387 GGTACGATGGTTCTTACCCG 57.786 55.000 0.00 0.00 44.35 5.28
7091 11805 2.224305 GGTATCGACTTGGGAAGATGGG 60.224 54.545 0.00 0.00 0.00 4.00
7183 11902 7.390718 TCTGAACTGCTTTTATCCCTTTTACTC 59.609 37.037 0.00 0.00 0.00 2.59
7199 11918 0.610174 TTCTCCGCATCTGAACTGCT 59.390 50.000 2.18 0.00 37.48 4.24
7219 11938 2.433664 CGCCGCGGTAGGTTTTCT 60.434 61.111 28.70 0.00 0.00 2.52
7260 11980 1.003355 CATTGTCCGGCACCTCTGT 60.003 57.895 0.00 0.00 0.00 3.41
7327 12047 0.401395 ACCAGTTCCCCCAACTCTCA 60.401 55.000 0.00 0.00 44.14 3.27
7366 12086 4.863925 GGAGCTGAGCCGAGCGAC 62.864 72.222 0.00 0.00 44.24 5.19
7390 12110 2.388232 ATTTCTTCACGCCGCCGTC 61.388 57.895 0.00 0.00 46.39 4.79
7603 12375 4.803426 CTCGTGGCCCTCAGACGC 62.803 72.222 7.64 0.00 33.11 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.