Multiple sequence alignment - TraesCS2A01G348100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G348100 chr2A 100.000 5959 0 0 1 5959 586900778 586894820 0.000000e+00 11005.0
1 TraesCS2A01G348100 chr2A 91.304 161 13 1 3531 3690 141506470 141506310 1.010000e-52 219.0
2 TraesCS2A01G348100 chr2D 94.936 3199 110 29 1930 5098 443245588 443242412 0.000000e+00 4963.0
3 TraesCS2A01G348100 chr2D 96.352 932 15 5 864 1779 443246975 443246047 0.000000e+00 1515.0
4 TraesCS2A01G348100 chr2D 93.520 679 15 10 5301 5959 443242371 443241702 0.000000e+00 983.0
5 TraesCS2A01G348100 chr2D 88.309 556 41 12 241 782 443262940 443262395 0.000000e+00 645.0
6 TraesCS2A01G348100 chr2D 85.160 438 38 12 518 946 443264159 443263740 1.990000e-114 424.0
7 TraesCS2A01G348100 chr2D 90.260 154 15 0 2994 3147 443245483 443245636 1.010000e-47 202.0
8 TraesCS2A01G348100 chr2D 86.164 159 6 3 1778 1928 443245932 443245782 2.220000e-34 158.0
9 TraesCS2A01G348100 chr2D 95.604 91 4 0 1930 2020 443244424 443244514 4.810000e-31 147.0
10 TraesCS2A01G348100 chr2B 94.136 3206 123 38 1930 5098 522203754 522200577 0.000000e+00 4819.0
11 TraesCS2A01G348100 chr2B 93.449 1099 20 11 864 1929 522205026 522203947 0.000000e+00 1583.0
12 TraesCS2A01G348100 chr2B 95.758 660 19 5 5300 5959 522200545 522199895 0.000000e+00 1055.0
13 TraesCS2A01G348100 chr2B 92.157 612 25 8 274 870 522208720 522208117 0.000000e+00 843.0
14 TraesCS2A01G348100 chr2B 93.802 242 9 2 45 281 522212610 522212370 5.680000e-95 359.0
15 TraesCS2A01G348100 chr2B 91.304 161 13 1 3531 3690 190023043 190022883 1.010000e-52 219.0
16 TraesCS2A01G348100 chr2B 90.909 154 14 0 2994 3147 522203649 522203802 2.180000e-49 207.0
17 TraesCS2A01G348100 chr2B 94.318 88 5 0 1930 2017 522202578 522202665 1.040000e-27 135.0
18 TraesCS2A01G348100 chr1D 90.867 1073 63 10 2077 3142 62921466 62920422 0.000000e+00 1406.0
19 TraesCS2A01G348100 chr5A 90.605 1075 63 16 2077 3149 689187422 689188460 0.000000e+00 1391.0
20 TraesCS2A01G348100 chr5A 94.250 400 20 3 2077 2475 707262803 707262406 5.110000e-170 608.0
21 TraesCS2A01G348100 chr6D 90.203 1082 69 12 2077 3149 13483286 13482233 0.000000e+00 1376.0
22 TraesCS2A01G348100 chr6D 92.547 161 11 1 3531 3690 392273074 392273234 4.650000e-56 230.0
23 TraesCS2A01G348100 chr6D 90.798 163 14 1 3531 3692 256728450 256728612 3.620000e-52 217.0
24 TraesCS2A01G348100 chr6D 90.798 163 14 1 3531 3692 256729247 256729409 3.620000e-52 217.0
25 TraesCS2A01G348100 chr6D 88.268 179 18 3 2466 2643 411400279 411400103 1.680000e-50 211.0
26 TraesCS2A01G348100 chr5D 90.037 1084 64 18 2077 3149 14039586 14038536 0.000000e+00 1363.0
27 TraesCS2A01G348100 chr5D 79.188 197 32 7 2957 3148 353481298 353481490 1.740000e-25 128.0
28 TraesCS2A01G348100 chrUn 89.177 1081 65 17 2092 3149 46171904 46172955 0.000000e+00 1301.0
29 TraesCS2A01G348100 chrUn 88.542 96 11 0 1930 2025 89951943 89952038 3.770000e-22 117.0
30 TraesCS2A01G348100 chr6A 87.976 840 49 14 2077 2914 163151640 163152429 0.000000e+00 944.0
31 TraesCS2A01G348100 chr6A 94.250 400 20 3 2077 2475 540799364 540799761 5.110000e-170 608.0
32 TraesCS2A01G348100 chr6A 92.357 157 11 1 3535 3690 538097683 538097839 7.770000e-54 222.0
33 TraesCS2A01G348100 chr6A 82.723 191 32 1 2958 3148 607047774 607047963 1.030000e-37 169.0
34 TraesCS2A01G348100 chr7D 94.118 153 8 1 3531 3682 34757018 34756866 1.290000e-56 231.0
35 TraesCS2A01G348100 chr7D 90.625 96 9 0 1930 2025 22992587 22992682 1.740000e-25 128.0
36 TraesCS2A01G348100 chr7D 90.625 96 9 0 1930 2025 83866791 83866696 1.740000e-25 128.0
37 TraesCS2A01G348100 chr7D 100.000 28 0 0 2859 2886 533910932 533910905 1.100000e-02 52.8
38 TraesCS2A01G348100 chr4D 93.182 88 6 0 1930 2017 477874718 477874631 4.850000e-26 130.0
39 TraesCS2A01G348100 chr1B 76.046 263 48 13 518 771 212121476 212121732 8.110000e-24 122.0
40 TraesCS2A01G348100 chr5B 83.761 117 13 5 518 632 641922047 641921935 8.170000e-19 106.0
41 TraesCS2A01G348100 chr7B 78.626 131 18 9 518 644 107643679 107643555 1.780000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G348100 chr2A 586894820 586900778 5958 True 11005.00 11005 100.0000 1 5959 1 chr2A.!!$R2 5958
1 TraesCS2A01G348100 chr2D 443241702 443246975 5273 True 1904.75 4963 92.7430 864 5959 4 chr2D.!!$R1 5095
2 TraesCS2A01G348100 chr2D 443262395 443264159 1764 True 534.50 645 86.7345 241 946 2 chr2D.!!$R2 705
3 TraesCS2A01G348100 chr2B 522199895 522212610 12715 True 1731.80 4819 93.8604 45 5959 5 chr2B.!!$R2 5914
4 TraesCS2A01G348100 chr1D 62920422 62921466 1044 True 1406.00 1406 90.8670 2077 3142 1 chr1D.!!$R1 1065
5 TraesCS2A01G348100 chr5A 689187422 689188460 1038 False 1391.00 1391 90.6050 2077 3149 1 chr5A.!!$F1 1072
6 TraesCS2A01G348100 chr6D 13482233 13483286 1053 True 1376.00 1376 90.2030 2077 3149 1 chr6D.!!$R1 1072
7 TraesCS2A01G348100 chr6D 256728450 256729409 959 False 217.00 217 90.7980 3531 3692 2 chr6D.!!$F2 161
8 TraesCS2A01G348100 chr5D 14038536 14039586 1050 True 1363.00 1363 90.0370 2077 3149 1 chr5D.!!$R1 1072
9 TraesCS2A01G348100 chrUn 46171904 46172955 1051 False 1301.00 1301 89.1770 2092 3149 1 chrUn.!!$F1 1057
10 TraesCS2A01G348100 chr6A 163151640 163152429 789 False 944.00 944 87.9760 2077 2914 1 chr6A.!!$F1 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 4046 0.109723 TGGGAGGGACCAGAAAAACG 59.890 55.0 0.00 0.0 41.20 3.60 F
1614 8416 0.828762 TTTCTGCTGGCCAATGCTGT 60.829 50.0 17.08 0.0 37.74 4.40 F
1893 8837 0.671251 TCGGGGAAAAATGTGTGTGC 59.329 50.0 0.00 0.0 0.00 4.57 F
1894 8838 0.673437 CGGGGAAAAATGTGTGTGCT 59.327 50.0 0.00 0.0 0.00 4.40 F
3272 10819 0.953471 CGTCGAAGAAATGGTGCCCA 60.953 55.0 0.00 0.0 39.69 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 8814 2.100087 ACACACATTTTTCCCCGAACAC 59.900 45.455 0.0 0.0 0.00 3.32 R
3252 10799 1.134694 GGCACCATTTCTTCGACGC 59.865 57.895 0.0 0.0 0.00 5.19 R
3422 10969 1.410004 TAATCCTACTGCCGTCAGGG 58.590 55.000 0.0 0.0 44.54 4.45 R
3593 11937 9.593134 AAATGAGCAAACAAATACACTAAAACA 57.407 25.926 0.0 0.0 0.00 2.83 R
5177 13625 0.034896 GTTGGCTCCAGGTCGAAGAA 59.965 55.000 0.0 0.0 39.69 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.295423 ACCACCATTTCGTCGGAGG 59.705 57.895 0.00 0.00 38.84 4.30
19 20 1.295423 CCACCATTTCGTCGGAGGT 59.705 57.895 0.00 0.00 0.00 3.85
20 21 0.533491 CCACCATTTCGTCGGAGGTA 59.467 55.000 0.00 0.00 0.00 3.08
21 22 1.470979 CCACCATTTCGTCGGAGGTAG 60.471 57.143 0.00 0.00 0.00 3.18
22 23 1.203994 CACCATTTCGTCGGAGGTAGT 59.796 52.381 0.00 0.00 0.00 2.73
23 24 1.203994 ACCATTTCGTCGGAGGTAGTG 59.796 52.381 0.00 0.00 0.00 2.74
24 25 1.470979 CCATTTCGTCGGAGGTAGTGG 60.471 57.143 4.90 4.90 0.00 4.00
25 26 1.203994 CATTTCGTCGGAGGTAGTGGT 59.796 52.381 0.00 0.00 0.00 4.16
26 27 0.599558 TTTCGTCGGAGGTAGTGGTG 59.400 55.000 0.00 0.00 0.00 4.17
27 28 0.250858 TTCGTCGGAGGTAGTGGTGA 60.251 55.000 0.00 0.00 0.00 4.02
28 29 0.957395 TCGTCGGAGGTAGTGGTGAC 60.957 60.000 0.00 0.00 0.00 3.67
29 30 0.959372 CGTCGGAGGTAGTGGTGACT 60.959 60.000 0.00 0.00 36.07 3.41
30 31 0.526662 GTCGGAGGTAGTGGTGACTG 59.473 60.000 0.00 0.00 33.21 3.51
31 32 1.215647 CGGAGGTAGTGGTGACTGC 59.784 63.158 0.00 0.00 34.22 4.40
32 33 1.251527 CGGAGGTAGTGGTGACTGCT 61.252 60.000 0.00 0.00 35.29 4.24
33 34 0.247736 GGAGGTAGTGGTGACTGCTG 59.752 60.000 0.00 0.00 35.29 4.41
34 35 1.257743 GAGGTAGTGGTGACTGCTGA 58.742 55.000 0.00 0.00 35.29 4.26
35 36 0.969894 AGGTAGTGGTGACTGCTGAC 59.030 55.000 0.00 0.00 35.29 3.51
36 37 0.388649 GGTAGTGGTGACTGCTGACG 60.389 60.000 0.00 0.00 35.29 4.35
37 38 0.314302 GTAGTGGTGACTGCTGACGT 59.686 55.000 0.00 0.00 32.36 4.34
38 39 0.596577 TAGTGGTGACTGCTGACGTC 59.403 55.000 9.11 9.11 33.21 4.34
39 40 2.016704 GTGGTGACTGCTGACGTCG 61.017 63.158 11.62 7.05 34.17 5.12
40 41 3.106407 GGTGACTGCTGACGTCGC 61.106 66.667 20.46 20.46 40.27 5.19
41 42 3.461982 GTGACTGCTGACGTCGCG 61.462 66.667 21.32 18.36 32.96 5.87
42 43 4.700365 TGACTGCTGACGTCGCGG 62.700 66.667 27.80 27.80 39.62 6.46
43 44 4.400109 GACTGCTGACGTCGCGGA 62.400 66.667 32.73 19.06 37.22 5.54
99 100 9.410556 ACATTTTTGATGCATAAACTTGTACTC 57.589 29.630 0.00 0.00 0.00 2.59
123 124 8.867112 TCGAGGTATACATTTGACTACATTTC 57.133 34.615 5.01 0.00 0.00 2.17
143 144 7.603784 ACATTTCCGTTATTTACCGTTAACTCT 59.396 33.333 3.71 0.00 0.00 3.24
223 229 1.153353 AATTACGTTGCACGAGTGGG 58.847 50.000 14.18 0.00 46.05 4.61
256 262 9.774413 ACCATTATACTACTTACTATTGGTTGC 57.226 33.333 0.00 0.00 29.81 4.17
343 4005 2.971330 TGCATGGGGTCTGAACATTTTT 59.029 40.909 0.00 0.00 0.00 1.94
384 4046 0.109723 TGGGAGGGACCAGAAAAACG 59.890 55.000 0.00 0.00 41.20 3.60
396 4058 6.080648 ACCAGAAAAACGGGTTTAAATCTC 57.919 37.500 0.00 0.00 44.16 2.75
399 4061 4.823442 AGAAAAACGGGTTTAAATCTCGGT 59.177 37.500 12.51 5.27 31.63 4.69
443 4105 7.691877 GCAAAAGTGTCAAACAAATTTCGAATT 59.308 29.630 0.00 0.00 0.00 2.17
444 4106 9.540431 CAAAAGTGTCAAACAAATTTCGAATTT 57.460 25.926 0.00 0.00 0.00 1.82
508 4170 3.961849 TGGCAAGCTATGGTTAATGACA 58.038 40.909 0.00 0.00 0.00 3.58
592 4265 6.205853 ACTTTGCTATGTTGGTCGTTTAATCA 59.794 34.615 0.00 0.00 0.00 2.57
741 4420 8.675705 TTGCTAATCCTATCGAATTCAAATGA 57.324 30.769 6.22 0.00 0.00 2.57
745 4424 9.869844 CTAATCCTATCGAATTCAAATGAACAC 57.130 33.333 6.22 0.00 36.80 3.32
810 4497 5.990120 ATTTCCCTGTTTTGAGAATCCTG 57.010 39.130 0.00 0.00 0.00 3.86
826 4513 1.299648 CTGGGAATCAACGAGGCCA 59.700 57.895 5.01 0.00 0.00 5.36
1444 8246 3.489180 AGTCGAAGTGATACCGTTGAG 57.511 47.619 0.00 0.00 0.00 3.02
1614 8416 0.828762 TTTCTGCTGGCCAATGCTGT 60.829 50.000 17.08 0.00 37.74 4.40
1686 8501 3.763057 ACTGGGGATGTTAAAGTTGGAC 58.237 45.455 0.00 0.00 0.00 4.02
1870 8814 6.207928 TGCCATAATTTCATGTATGCTTTCG 58.792 36.000 0.00 0.00 0.00 3.46
1890 8834 2.738135 GTGTTCGGGGAAAAATGTGTG 58.262 47.619 0.00 0.00 0.00 3.82
1891 8835 2.100087 GTGTTCGGGGAAAAATGTGTGT 59.900 45.455 0.00 0.00 0.00 3.72
1892 8836 2.099921 TGTTCGGGGAAAAATGTGTGTG 59.900 45.455 0.00 0.00 0.00 3.82
1893 8837 0.671251 TCGGGGAAAAATGTGTGTGC 59.329 50.000 0.00 0.00 0.00 4.57
1894 8838 0.673437 CGGGGAAAAATGTGTGTGCT 59.327 50.000 0.00 0.00 0.00 4.40
1895 8839 1.883275 CGGGGAAAAATGTGTGTGCTA 59.117 47.619 0.00 0.00 0.00 3.49
1896 8840 2.491693 CGGGGAAAAATGTGTGTGCTAT 59.508 45.455 0.00 0.00 0.00 2.97
1897 8841 3.673052 CGGGGAAAAATGTGTGTGCTATG 60.673 47.826 0.00 0.00 0.00 2.23
1898 8842 3.258123 GGGGAAAAATGTGTGTGCTATGT 59.742 43.478 0.00 0.00 0.00 2.29
2030 9166 6.287589 AGGTGGTTTTAGTCTGACATAGAG 57.712 41.667 10.88 0.00 35.70 2.43
2129 9265 6.458232 ACGCTCTGAAATGTCTAGACTATT 57.542 37.500 23.01 16.91 0.00 1.73
2310 9698 2.096268 TGAAGAAAGAAACTCATGCGCG 60.096 45.455 0.00 0.00 0.00 6.86
2311 9699 1.512926 AGAAAGAAACTCATGCGCGT 58.487 45.000 8.43 0.00 0.00 6.01
2358 9746 2.121992 CTCCTGCCACAGCCACTTCT 62.122 60.000 0.00 0.00 38.69 2.85
2501 9979 4.500887 CCACTTCAAGTTCTCACCGACTTA 60.501 45.833 0.00 0.00 34.52 2.24
2546 10024 5.639082 TGCCTACATATACATCATGAAAGCG 59.361 40.000 0.00 0.00 0.00 4.68
2673 10160 2.069273 GCATCAACAACTCGTACAGCT 58.931 47.619 0.00 0.00 0.00 4.24
2695 10182 1.578206 GGCTTGAACTTGCCGAGGAC 61.578 60.000 0.00 0.00 39.71 3.85
2728 10237 2.745884 TGGCTCCACAATTCGCCG 60.746 61.111 0.00 0.00 45.36 6.46
2784 10299 1.817099 CTCATGGGTCAAGAGCGCC 60.817 63.158 2.29 0.00 0.00 6.53
2803 10318 4.778143 CCTGCCGTGCCCAGGTAC 62.778 72.222 0.00 0.00 43.86 3.34
2829 10351 3.720601 CAGCCACTGCCCTGCCTA 61.721 66.667 0.00 0.00 38.69 3.93
2830 10352 3.406200 AGCCACTGCCCTGCCTAG 61.406 66.667 0.00 0.00 38.69 3.02
2831 10353 4.496336 GCCACTGCCCTGCCTAGG 62.496 72.222 3.67 3.67 44.18 3.02
2832 10354 3.011517 CCACTGCCCTGCCTAGGT 61.012 66.667 11.31 0.00 42.96 3.08
2833 10355 2.586792 CACTGCCCTGCCTAGGTC 59.413 66.667 11.31 3.32 42.96 3.85
2834 10356 2.689034 ACTGCCCTGCCTAGGTCC 60.689 66.667 11.31 0.00 42.96 4.46
2835 10357 3.854669 CTGCCCTGCCTAGGTCCG 61.855 72.222 11.31 0.00 42.96 4.79
2915 10437 2.619931 TGTGAGTGAGAAAGGGGATCA 58.380 47.619 0.00 0.00 0.00 2.92
2917 10439 3.394274 TGTGAGTGAGAAAGGGGATCAAA 59.606 43.478 0.00 0.00 0.00 2.69
2988 10535 2.290641 GCTACATGGCCCATTTTAGTCG 59.709 50.000 0.00 0.00 0.00 4.18
3002 10549 1.946984 TAGTCGAAACCAGGGTCCAT 58.053 50.000 0.00 0.00 0.00 3.41
3012 10559 3.941629 ACCAGGGTCCATGTCATACTAT 58.058 45.455 2.29 0.00 0.00 2.12
3205 10752 3.547746 GCGTGGGGGAAAAATAGACATA 58.452 45.455 0.00 0.00 0.00 2.29
3249 10796 6.591834 GTCTGGCAAGCGATATACTATGAATT 59.408 38.462 0.00 0.00 0.00 2.17
3252 10799 6.591448 TGGCAAGCGATATACTATGAATTCTG 59.409 38.462 7.05 0.00 0.00 3.02
3272 10819 0.953471 CGTCGAAGAAATGGTGCCCA 60.953 55.000 0.00 0.00 39.69 5.36
3422 10969 1.139455 CCATTGGGCATCAATCCAACC 59.861 52.381 0.00 0.00 44.64 3.77
3543 11090 7.829706 GTGATTTAAGAGTTACTCCCTCCATTT 59.170 37.037 8.96 0.00 0.00 2.32
3593 11937 9.996554 TTTTGTGAATCGGATGTATATAGACAT 57.003 29.630 12.70 12.70 42.82 3.06
3988 12383 8.024865 ACGCCAAAAGGTAATTTTACATTACTC 58.975 33.333 1.29 0.00 39.11 2.59
4203 12618 4.593206 CCACTTGTCCTCTGGCCTATTATA 59.407 45.833 3.32 0.00 0.00 0.98
4710 13128 3.910568 AGGAAATCTCTGGAAGCTGAG 57.089 47.619 0.00 0.00 0.00 3.35
4763 13181 5.403166 TCGTTTACCTTACACAACTTCGATG 59.597 40.000 0.00 0.00 0.00 3.84
4790 13208 1.968540 GTTGAGCCACTGAGGTGCC 60.969 63.158 0.00 0.00 41.75 5.01
4804 13222 1.383456 GGTGCCGCAGCCATATCAAA 61.383 55.000 11.63 0.00 38.69 2.69
4808 13226 2.224499 TGCCGCAGCCATATCAAAGATA 60.224 45.455 0.00 0.00 38.69 1.98
4810 13228 3.441572 GCCGCAGCCATATCAAAGATAAT 59.558 43.478 0.00 0.00 0.00 1.28
4832 13250 7.768807 AATAGTTTTACCTTGTGGCATTGTA 57.231 32.000 0.00 0.00 36.63 2.41
4833 13251 5.705609 AGTTTTACCTTGTGGCATTGTAG 57.294 39.130 0.00 0.00 36.63 2.74
4834 13252 4.022329 AGTTTTACCTTGTGGCATTGTAGC 60.022 41.667 0.00 0.00 36.63 3.58
4896 13314 1.870055 CTGGCAGGTGTTGGTGATGC 61.870 60.000 6.61 0.00 36.16 3.91
4902 13320 2.101249 CAGGTGTTGGTGATGCAACTTT 59.899 45.455 0.00 0.00 32.91 2.66
4910 13328 5.327616 TGGTGATGCAACTTTGATTATGG 57.672 39.130 0.00 0.00 0.00 2.74
4920 13338 6.458342 GCAACTTTGATTATGGTGTAGGTAGC 60.458 42.308 0.00 0.00 0.00 3.58
4946 13365 8.236586 CCACGAATTGATACTTGAGAATGAAAA 58.763 33.333 0.00 0.00 0.00 2.29
4960 13387 7.362662 TGAGAATGAAAACTGATTTAGTGTGC 58.637 34.615 0.00 0.00 40.26 4.57
4964 13391 4.832266 TGAAAACTGATTTAGTGTGCCCAT 59.168 37.500 0.00 0.00 40.26 4.00
4970 13397 4.865905 TGATTTAGTGTGCCCATTATGGT 58.134 39.130 10.65 0.00 35.17 3.55
4985 13412 2.206576 ATGGTTTCTCCTGTTCAGCC 57.793 50.000 0.00 0.00 37.07 4.85
5004 13452 1.151777 CGTTGTACTATGCCTGGCCG 61.152 60.000 17.53 7.20 0.00 6.13
5023 13471 3.326733 CGTCTGTCGGAGTCTTATCTG 57.673 52.381 0.00 0.00 35.71 2.90
5025 13473 3.127203 CGTCTGTCGGAGTCTTATCTGTT 59.873 47.826 0.00 0.00 35.71 3.16
5026 13474 4.331992 CGTCTGTCGGAGTCTTATCTGTTA 59.668 45.833 0.00 0.00 35.71 2.41
5029 13477 6.538021 GTCTGTCGGAGTCTTATCTGTTACTA 59.462 42.308 0.00 0.00 0.00 1.82
5030 13478 6.762187 TCTGTCGGAGTCTTATCTGTTACTAG 59.238 42.308 0.00 0.00 0.00 2.57
5031 13479 5.296283 TGTCGGAGTCTTATCTGTTACTAGC 59.704 44.000 0.00 0.00 0.00 3.42
5032 13480 5.528320 GTCGGAGTCTTATCTGTTACTAGCT 59.472 44.000 0.00 0.00 0.00 3.32
5033 13481 5.527951 TCGGAGTCTTATCTGTTACTAGCTG 59.472 44.000 0.00 0.00 0.00 4.24
5034 13482 5.297278 CGGAGTCTTATCTGTTACTAGCTGT 59.703 44.000 0.00 0.00 0.00 4.40
5035 13483 6.500041 GGAGTCTTATCTGTTACTAGCTGTG 58.500 44.000 0.00 0.00 0.00 3.66
5036 13484 6.319152 GGAGTCTTATCTGTTACTAGCTGTGA 59.681 42.308 0.00 0.00 0.00 3.58
5037 13485 7.013846 GGAGTCTTATCTGTTACTAGCTGTGAT 59.986 40.741 0.00 0.00 0.00 3.06
5038 13486 8.299990 AGTCTTATCTGTTACTAGCTGTGATT 57.700 34.615 0.00 0.00 0.00 2.57
5041 13489 8.630917 TCTTATCTGTTACTAGCTGTGATTACC 58.369 37.037 0.00 0.00 0.00 2.85
5059 13507 8.345565 GTGATTACCCACATAATCTTGATCAAC 58.654 37.037 3.38 0.00 40.70 3.18
5098 13546 5.992729 TGTTTTCGTGGACTAAAATGCTAC 58.007 37.500 0.00 0.00 0.00 3.58
5100 13548 6.073440 TGTTTTCGTGGACTAAAATGCTACTC 60.073 38.462 0.00 0.00 0.00 2.59
5101 13549 4.119442 TCGTGGACTAAAATGCTACTCC 57.881 45.455 0.00 0.00 0.00 3.85
5102 13550 3.118884 TCGTGGACTAAAATGCTACTCCC 60.119 47.826 0.00 0.00 0.00 4.30
5103 13551 3.118738 CGTGGACTAAAATGCTACTCCCT 60.119 47.826 0.00 0.00 0.00 4.20
5104 13552 4.443621 GTGGACTAAAATGCTACTCCCTC 58.556 47.826 0.00 0.00 0.00 4.30
5105 13553 3.454812 TGGACTAAAATGCTACTCCCTCC 59.545 47.826 0.00 0.00 0.00 4.30
5106 13554 3.454812 GGACTAAAATGCTACTCCCTCCA 59.545 47.826 0.00 0.00 0.00 3.86
5107 13555 4.103311 GGACTAAAATGCTACTCCCTCCAT 59.897 45.833 0.00 0.00 0.00 3.41
5108 13556 5.297569 ACTAAAATGCTACTCCCTCCATC 57.702 43.478 0.00 0.00 0.00 3.51
5109 13557 3.584733 AAAATGCTACTCCCTCCATCC 57.415 47.619 0.00 0.00 0.00 3.51
5110 13558 1.439543 AATGCTACTCCCTCCATCCC 58.560 55.000 0.00 0.00 0.00 3.85
5114 13562 1.564348 GCTACTCCCTCCATCCCAAAA 59.436 52.381 0.00 0.00 0.00 2.44
5115 13563 2.175715 GCTACTCCCTCCATCCCAAAAT 59.824 50.000 0.00 0.00 0.00 1.82
5116 13564 3.748989 GCTACTCCCTCCATCCCAAAATC 60.749 52.174 0.00 0.00 0.00 2.17
5117 13565 2.287584 ACTCCCTCCATCCCAAAATCA 58.712 47.619 0.00 0.00 0.00 2.57
5118 13566 2.654385 ACTCCCTCCATCCCAAAATCAA 59.346 45.455 0.00 0.00 0.00 2.57
5119 13567 3.077391 ACTCCCTCCATCCCAAAATCAAA 59.923 43.478 0.00 0.00 0.00 2.69
5121 13569 4.697798 TCCCTCCATCCCAAAATCAAAAT 58.302 39.130 0.00 0.00 0.00 1.82
5122 13570 5.848004 TCCCTCCATCCCAAAATCAAAATA 58.152 37.500 0.00 0.00 0.00 1.40
5123 13571 6.451714 TCCCTCCATCCCAAAATCAAAATAT 58.548 36.000 0.00 0.00 0.00 1.28
5124 13572 7.600093 TCCCTCCATCCCAAAATCAAAATATA 58.400 34.615 0.00 0.00 0.00 0.86
5125 13573 8.070604 TCCCTCCATCCCAAAATCAAAATATAA 58.929 33.333 0.00 0.00 0.00 0.98
5148 13596 7.646548 AAGATCATTTAAACCCTTTCCTAGC 57.353 36.000 0.00 0.00 0.00 3.42
5149 13597 6.129874 AGATCATTTAAACCCTTTCCTAGCC 58.870 40.000 0.00 0.00 0.00 3.93
5150 13598 4.606210 TCATTTAAACCCTTTCCTAGCCC 58.394 43.478 0.00 0.00 0.00 5.19
5151 13599 4.293901 TCATTTAAACCCTTTCCTAGCCCT 59.706 41.667 0.00 0.00 0.00 5.19
5152 13600 4.752621 TTTAAACCCTTTCCTAGCCCTT 57.247 40.909 0.00 0.00 0.00 3.95
5153 13601 4.752621 TTAAACCCTTTCCTAGCCCTTT 57.247 40.909 0.00 0.00 0.00 3.11
5154 13602 2.901338 AACCCTTTCCTAGCCCTTTC 57.099 50.000 0.00 0.00 0.00 2.62
5155 13603 2.061264 ACCCTTTCCTAGCCCTTTCT 57.939 50.000 0.00 0.00 0.00 2.52
5156 13604 1.916874 ACCCTTTCCTAGCCCTTTCTC 59.083 52.381 0.00 0.00 0.00 2.87
5157 13605 1.134371 CCCTTTCCTAGCCCTTTCTCG 60.134 57.143 0.00 0.00 0.00 4.04
5158 13606 1.831736 CCTTTCCTAGCCCTTTCTCGA 59.168 52.381 0.00 0.00 0.00 4.04
5159 13607 2.418884 CCTTTCCTAGCCCTTTCTCGAC 60.419 54.545 0.00 0.00 0.00 4.20
5160 13608 2.233305 TTCCTAGCCCTTTCTCGACT 57.767 50.000 0.00 0.00 0.00 4.18
5161 13609 2.233305 TCCTAGCCCTTTCTCGACTT 57.767 50.000 0.00 0.00 0.00 3.01
5162 13610 1.825474 TCCTAGCCCTTTCTCGACTTG 59.175 52.381 0.00 0.00 0.00 3.16
5163 13611 1.825474 CCTAGCCCTTTCTCGACTTGA 59.175 52.381 0.00 0.00 0.00 3.02
5164 13612 2.432510 CCTAGCCCTTTCTCGACTTGAT 59.567 50.000 0.00 0.00 0.00 2.57
5165 13613 2.393271 AGCCCTTTCTCGACTTGATG 57.607 50.000 0.00 0.00 0.00 3.07
5166 13614 1.902508 AGCCCTTTCTCGACTTGATGA 59.097 47.619 0.00 0.00 0.00 2.92
5167 13615 2.303022 AGCCCTTTCTCGACTTGATGAA 59.697 45.455 0.00 0.00 0.00 2.57
5168 13616 2.416893 GCCCTTTCTCGACTTGATGAAC 59.583 50.000 0.00 0.00 0.00 3.18
5169 13617 3.866449 GCCCTTTCTCGACTTGATGAACT 60.866 47.826 0.00 0.00 0.00 3.01
5170 13618 4.319177 CCCTTTCTCGACTTGATGAACTT 58.681 43.478 0.00 0.00 0.00 2.66
5171 13619 4.153117 CCCTTTCTCGACTTGATGAACTTG 59.847 45.833 0.00 0.00 0.00 3.16
5172 13620 4.153117 CCTTTCTCGACTTGATGAACTTGG 59.847 45.833 0.00 0.00 0.00 3.61
5173 13621 4.336889 TTCTCGACTTGATGAACTTGGT 57.663 40.909 0.00 0.00 0.00 3.67
5174 13622 3.914312 TCTCGACTTGATGAACTTGGTC 58.086 45.455 0.00 0.00 0.00 4.02
5175 13623 3.320826 TCTCGACTTGATGAACTTGGTCA 59.679 43.478 0.00 0.00 0.00 4.02
5176 13624 4.058124 CTCGACTTGATGAACTTGGTCAA 58.942 43.478 0.00 0.00 0.00 3.18
5177 13625 4.641396 TCGACTTGATGAACTTGGTCAAT 58.359 39.130 0.00 0.00 32.05 2.57
5178 13626 5.063204 TCGACTTGATGAACTTGGTCAATT 58.937 37.500 0.00 0.00 32.05 2.32
5179 13627 5.179368 TCGACTTGATGAACTTGGTCAATTC 59.821 40.000 0.00 0.00 32.05 2.17
5180 13628 5.180117 CGACTTGATGAACTTGGTCAATTCT 59.820 40.000 0.00 0.00 32.57 2.40
5181 13629 6.293626 CGACTTGATGAACTTGGTCAATTCTT 60.294 38.462 0.00 0.00 32.57 2.52
5182 13630 6.974965 ACTTGATGAACTTGGTCAATTCTTC 58.025 36.000 0.00 0.00 32.05 2.87
5183 13631 5.611796 TGATGAACTTGGTCAATTCTTCG 57.388 39.130 0.00 0.00 32.14 3.79
5184 13632 5.304778 TGATGAACTTGGTCAATTCTTCGA 58.695 37.500 0.00 0.00 32.14 3.71
5185 13633 5.179368 TGATGAACTTGGTCAATTCTTCGAC 59.821 40.000 0.00 0.00 32.14 4.20
5190 13638 2.762535 GGTCAATTCTTCGACCTGGA 57.237 50.000 0.00 0.00 46.83 3.86
5191 13639 2.622436 GGTCAATTCTTCGACCTGGAG 58.378 52.381 0.00 0.00 46.83 3.86
5192 13640 2.003301 GTCAATTCTTCGACCTGGAGC 58.997 52.381 0.00 0.00 0.00 4.70
5193 13641 1.066143 TCAATTCTTCGACCTGGAGCC 60.066 52.381 0.00 0.00 0.00 4.70
5194 13642 0.984230 AATTCTTCGACCTGGAGCCA 59.016 50.000 0.00 0.00 0.00 4.75
5195 13643 0.984230 ATTCTTCGACCTGGAGCCAA 59.016 50.000 0.00 0.00 0.00 4.52
5196 13644 0.034896 TTCTTCGACCTGGAGCCAAC 59.965 55.000 0.00 0.00 0.00 3.77
5197 13645 1.118965 TCTTCGACCTGGAGCCAACA 61.119 55.000 0.00 0.00 0.00 3.33
5198 13646 0.036010 CTTCGACCTGGAGCCAACAT 60.036 55.000 0.00 0.00 0.00 2.71
5199 13647 0.400213 TTCGACCTGGAGCCAACATT 59.600 50.000 0.00 0.00 0.00 2.71
5200 13648 0.321564 TCGACCTGGAGCCAACATTG 60.322 55.000 0.00 0.00 0.00 2.82
5201 13649 0.321564 CGACCTGGAGCCAACATTGA 60.322 55.000 0.00 0.00 0.00 2.57
5202 13650 1.168714 GACCTGGAGCCAACATTGAC 58.831 55.000 0.00 0.00 0.00 3.18
5203 13651 0.251341 ACCTGGAGCCAACATTGACC 60.251 55.000 0.00 0.00 0.00 4.02
5204 13652 0.038744 CCTGGAGCCAACATTGACCT 59.961 55.000 0.00 0.00 0.00 3.85
5205 13653 1.457346 CTGGAGCCAACATTGACCTC 58.543 55.000 0.00 0.00 0.00 3.85
5206 13654 1.004044 CTGGAGCCAACATTGACCTCT 59.996 52.381 10.20 0.00 31.48 3.69
5207 13655 1.425066 TGGAGCCAACATTGACCTCTT 59.575 47.619 10.20 0.00 31.48 2.85
5208 13656 2.158475 TGGAGCCAACATTGACCTCTTT 60.158 45.455 10.20 0.00 31.48 2.52
5209 13657 2.893489 GGAGCCAACATTGACCTCTTTT 59.107 45.455 10.20 0.00 31.48 2.27
5210 13658 3.057245 GGAGCCAACATTGACCTCTTTTC 60.057 47.826 10.20 0.00 31.48 2.29
5211 13659 2.893489 AGCCAACATTGACCTCTTTTCC 59.107 45.455 0.00 0.00 0.00 3.13
5212 13660 2.627699 GCCAACATTGACCTCTTTTCCA 59.372 45.455 0.00 0.00 0.00 3.53
5213 13661 3.069443 GCCAACATTGACCTCTTTTCCAA 59.931 43.478 0.00 0.00 0.00 3.53
5214 13662 4.620982 CCAACATTGACCTCTTTTCCAAC 58.379 43.478 0.00 0.00 0.00 3.77
5215 13663 4.501400 CCAACATTGACCTCTTTTCCAACC 60.501 45.833 0.00 0.00 0.00 3.77
5216 13664 3.909732 ACATTGACCTCTTTTCCAACCA 58.090 40.909 0.00 0.00 0.00 3.67
5217 13665 3.636764 ACATTGACCTCTTTTCCAACCAC 59.363 43.478 0.00 0.00 0.00 4.16
5218 13666 3.374042 TTGACCTCTTTTCCAACCACA 57.626 42.857 0.00 0.00 0.00 4.17
5219 13667 3.374042 TGACCTCTTTTCCAACCACAA 57.626 42.857 0.00 0.00 0.00 3.33
5220 13668 3.020984 TGACCTCTTTTCCAACCACAAC 58.979 45.455 0.00 0.00 0.00 3.32
5221 13669 3.288092 GACCTCTTTTCCAACCACAACT 58.712 45.455 0.00 0.00 0.00 3.16
5222 13670 4.080243 TGACCTCTTTTCCAACCACAACTA 60.080 41.667 0.00 0.00 0.00 2.24
5223 13671 4.204799 ACCTCTTTTCCAACCACAACTAC 58.795 43.478 0.00 0.00 0.00 2.73
5224 13672 4.079958 ACCTCTTTTCCAACCACAACTACT 60.080 41.667 0.00 0.00 0.00 2.57
5225 13673 4.515567 CCTCTTTTCCAACCACAACTACTC 59.484 45.833 0.00 0.00 0.00 2.59
5226 13674 4.457466 TCTTTTCCAACCACAACTACTCC 58.543 43.478 0.00 0.00 0.00 3.85
5227 13675 2.943036 TTCCAACCACAACTACTCCC 57.057 50.000 0.00 0.00 0.00 4.30
5228 13676 0.682852 TCCAACCACAACTACTCCCG 59.317 55.000 0.00 0.00 0.00 5.14
5229 13677 0.395312 CCAACCACAACTACTCCCGT 59.605 55.000 0.00 0.00 0.00 5.28
5230 13678 1.607251 CCAACCACAACTACTCCCGTC 60.607 57.143 0.00 0.00 0.00 4.79
5231 13679 1.343465 CAACCACAACTACTCCCGTCT 59.657 52.381 0.00 0.00 0.00 4.18
5232 13680 1.254954 ACCACAACTACTCCCGTCTC 58.745 55.000 0.00 0.00 0.00 3.36
5233 13681 1.254026 CCACAACTACTCCCGTCTCA 58.746 55.000 0.00 0.00 0.00 3.27
5234 13682 1.616865 CCACAACTACTCCCGTCTCAA 59.383 52.381 0.00 0.00 0.00 3.02
5235 13683 2.036733 CCACAACTACTCCCGTCTCAAA 59.963 50.000 0.00 0.00 0.00 2.69
5236 13684 3.493699 CCACAACTACTCCCGTCTCAAAA 60.494 47.826 0.00 0.00 0.00 2.44
5237 13685 4.315803 CACAACTACTCCCGTCTCAAAAT 58.684 43.478 0.00 0.00 0.00 1.82
5238 13686 5.475719 CACAACTACTCCCGTCTCAAAATA 58.524 41.667 0.00 0.00 0.00 1.40
5239 13687 6.106673 CACAACTACTCCCGTCTCAAAATAT 58.893 40.000 0.00 0.00 0.00 1.28
5240 13688 7.262772 CACAACTACTCCCGTCTCAAAATATA 58.737 38.462 0.00 0.00 0.00 0.86
5241 13689 7.926555 CACAACTACTCCCGTCTCAAAATATAT 59.073 37.037 0.00 0.00 0.00 0.86
5242 13690 8.483758 ACAACTACTCCCGTCTCAAAATATATT 58.516 33.333 0.00 0.00 0.00 1.28
5243 13691 8.979574 CAACTACTCCCGTCTCAAAATATATTC 58.020 37.037 0.00 0.00 0.00 1.75
5244 13692 7.668492 ACTACTCCCGTCTCAAAATATATTCC 58.332 38.462 0.00 0.00 0.00 3.01
5245 13693 6.494666 ACTCCCGTCTCAAAATATATTCCA 57.505 37.500 0.00 0.00 0.00 3.53
5246 13694 6.895782 ACTCCCGTCTCAAAATATATTCCAA 58.104 36.000 0.00 0.00 0.00 3.53
5247 13695 7.343357 ACTCCCGTCTCAAAATATATTCCAAA 58.657 34.615 0.00 0.00 0.00 3.28
5248 13696 7.832187 ACTCCCGTCTCAAAATATATTCCAAAA 59.168 33.333 0.00 0.00 0.00 2.44
5249 13697 8.760980 TCCCGTCTCAAAATATATTCCAAAAT 57.239 30.769 0.00 0.00 0.00 1.82
5250 13698 8.629158 TCCCGTCTCAAAATATATTCCAAAATG 58.371 33.333 0.00 0.00 0.00 2.32
5251 13699 8.413229 CCCGTCTCAAAATATATTCCAAAATGT 58.587 33.333 0.00 0.00 0.00 2.71
5286 13734 8.914328 TTTTACATTATCATAAGTCGTGTCGA 57.086 30.769 0.00 0.00 0.00 4.20
5287 13735 9.524106 TTTTACATTATCATAAGTCGTGTCGAT 57.476 29.630 0.00 0.00 38.42 3.59
5288 13736 9.524106 TTTACATTATCATAAGTCGTGTCGATT 57.476 29.630 0.00 0.00 38.42 3.34
5289 13737 9.524106 TTACATTATCATAAGTCGTGTCGATTT 57.476 29.630 5.40 5.40 39.06 2.17
5290 13738 8.062231 ACATTATCATAAGTCGTGTCGATTTC 57.938 34.615 3.48 0.00 37.10 2.17
5291 13739 7.169308 ACATTATCATAAGTCGTGTCGATTTCC 59.831 37.037 3.48 0.00 37.10 3.13
5292 13740 4.713824 TCATAAGTCGTGTCGATTTCCT 57.286 40.909 3.48 0.00 37.10 3.36
5293 13741 4.669318 TCATAAGTCGTGTCGATTTCCTC 58.331 43.478 3.48 0.00 37.10 3.71
5294 13742 2.365408 AAGTCGTGTCGATTTCCTCC 57.635 50.000 0.00 0.00 38.42 4.30
5295 13743 1.254026 AGTCGTGTCGATTTCCTCCA 58.746 50.000 0.00 0.00 38.42 3.86
5296 13744 1.202582 AGTCGTGTCGATTTCCTCCAG 59.797 52.381 0.00 0.00 38.42 3.86
5297 13745 0.530744 TCGTGTCGATTTCCTCCAGG 59.469 55.000 0.00 0.00 0.00 4.45
5298 13746 0.246635 CGTGTCGATTTCCTCCAGGT 59.753 55.000 0.00 0.00 36.34 4.00
5312 13760 3.388308 CTCCAGGTCGCATAATCTTGAG 58.612 50.000 0.00 0.00 0.00 3.02
5326 13774 8.229137 GCATAATCTTGAGCAATAGATCACTTC 58.771 37.037 0.00 0.00 40.39 3.01
5345 13793 2.356135 TCTGCTAAGAAACGGCATTCC 58.644 47.619 0.00 0.00 35.37 3.01
5571 14027 2.124819 CGAGCAGAAGGCCAGCAT 60.125 61.111 5.01 0.00 46.50 3.79
5724 14192 3.599285 CTTGCCGAACACCGCCCTA 62.599 63.158 0.00 0.00 36.84 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.295423 CCTCCGACGAAATGGTGGT 59.705 57.895 0.00 0.00 34.82 4.16
1 2 0.533491 TACCTCCGACGAAATGGTGG 59.467 55.000 0.00 0.00 43.12 4.61
2 3 1.203994 ACTACCTCCGACGAAATGGTG 59.796 52.381 0.00 0.00 32.74 4.17
4 5 1.470979 CCACTACCTCCGACGAAATGG 60.471 57.143 0.00 0.00 0.00 3.16
5 6 1.203994 ACCACTACCTCCGACGAAATG 59.796 52.381 0.00 0.00 0.00 2.32
6 7 1.203994 CACCACTACCTCCGACGAAAT 59.796 52.381 0.00 0.00 0.00 2.17
7 8 0.599558 CACCACTACCTCCGACGAAA 59.400 55.000 0.00 0.00 0.00 3.46
8 9 0.250858 TCACCACTACCTCCGACGAA 60.251 55.000 0.00 0.00 0.00 3.85
9 10 0.957395 GTCACCACTACCTCCGACGA 60.957 60.000 0.00 0.00 0.00 4.20
10 11 0.959372 AGTCACCACTACCTCCGACG 60.959 60.000 0.00 0.00 0.00 5.12
11 12 0.526662 CAGTCACCACTACCTCCGAC 59.473 60.000 0.00 0.00 0.00 4.79
12 13 1.248785 GCAGTCACCACTACCTCCGA 61.249 60.000 0.00 0.00 0.00 4.55
13 14 1.215647 GCAGTCACCACTACCTCCG 59.784 63.158 0.00 0.00 0.00 4.63
14 15 0.247736 CAGCAGTCACCACTACCTCC 59.752 60.000 0.00 0.00 0.00 4.30
15 16 1.067495 GTCAGCAGTCACCACTACCTC 60.067 57.143 0.00 0.00 0.00 3.85
16 17 0.969894 GTCAGCAGTCACCACTACCT 59.030 55.000 0.00 0.00 0.00 3.08
17 18 0.388649 CGTCAGCAGTCACCACTACC 60.389 60.000 0.00 0.00 0.00 3.18
18 19 0.314302 ACGTCAGCAGTCACCACTAC 59.686 55.000 0.00 0.00 0.00 2.73
19 20 0.596577 GACGTCAGCAGTCACCACTA 59.403 55.000 11.55 0.00 38.42 2.74
20 21 1.364171 GACGTCAGCAGTCACCACT 59.636 57.895 11.55 0.00 38.42 4.00
21 22 2.016704 CGACGTCAGCAGTCACCAC 61.017 63.158 17.16 0.00 38.46 4.16
22 23 2.335011 CGACGTCAGCAGTCACCA 59.665 61.111 17.16 0.00 38.46 4.17
23 24 3.106407 GCGACGTCAGCAGTCACC 61.106 66.667 21.73 0.00 38.46 4.02
24 25 3.461982 CGCGACGTCAGCAGTCAC 61.462 66.667 24.54 2.23 38.46 3.67
25 26 4.700365 CCGCGACGTCAGCAGTCA 62.700 66.667 24.54 0.00 38.46 3.41
26 27 4.400109 TCCGCGACGTCAGCAGTC 62.400 66.667 24.54 4.62 35.41 3.51
27 28 4.702081 GTCCGCGACGTCAGCAGT 62.702 66.667 24.54 0.00 34.19 4.40
28 29 3.035576 TAGTCCGCGACGTCAGCAG 62.036 63.158 24.54 17.07 37.67 4.24
29 30 3.051479 TAGTCCGCGACGTCAGCA 61.051 61.111 24.54 9.69 37.67 4.41
30 31 2.524636 AAGTAGTCCGCGACGTCAGC 62.525 60.000 17.16 17.83 37.67 4.26
31 32 0.723414 TAAGTAGTCCGCGACGTCAG 59.277 55.000 17.16 8.71 37.67 3.51
32 33 0.723414 CTAAGTAGTCCGCGACGTCA 59.277 55.000 17.16 0.00 37.67 4.35
33 34 0.723981 ACTAAGTAGTCCGCGACGTC 59.276 55.000 8.23 5.18 37.67 4.34
34 35 2.010145 TACTAAGTAGTCCGCGACGT 57.990 50.000 8.23 0.00 37.67 4.34
35 36 3.599046 AATACTAAGTAGTCCGCGACG 57.401 47.619 8.23 0.00 37.67 5.12
82 83 5.086104 ACCTCGAGTACAAGTTTATGCAT 57.914 39.130 12.31 3.79 0.00 3.96
84 85 7.198390 TGTATACCTCGAGTACAAGTTTATGC 58.802 38.462 12.31 0.00 32.46 3.14
99 100 7.096189 CGGAAATGTAGTCAAATGTATACCTCG 60.096 40.741 0.00 0.00 0.00 4.63
123 124 5.289434 GTGGAGAGTTAACGGTAAATAACGG 59.711 44.000 0.00 0.00 37.16 4.44
167 168 5.376625 ACCTGAATAGCTCACTGTTTTTGA 58.623 37.500 0.00 0.00 0.00 2.69
210 216 0.535335 TAGGATCCCACTCGTGCAAC 59.465 55.000 8.55 0.00 0.00 4.17
302 3964 7.328249 CCATGCAACGTGTATTTTGACTTAATT 59.672 33.333 0.00 0.00 0.00 1.40
321 3983 2.307496 AATGTTCAGACCCCATGCAA 57.693 45.000 0.00 0.00 0.00 4.08
365 4027 0.109723 CGTTTTTCTGGTCCCTCCCA 59.890 55.000 0.00 0.00 34.77 4.37
568 4241 6.607689 TGATTAAACGACCAACATAGCAAAG 58.392 36.000 0.00 0.00 0.00 2.77
649 4322 5.045213 TGAAGTGGTTGCTGGATTTCCTATA 60.045 40.000 0.00 0.00 36.82 1.31
699 4372 8.394121 GGATTAGCAAAGAGTATTTCACAGAAG 58.606 37.037 0.00 0.00 0.00 2.85
741 4420 6.801539 AATACACGATCACAATGAAGTGTT 57.198 33.333 20.67 11.16 44.12 3.32
745 4424 7.530010 AGGAAAAATACACGATCACAATGAAG 58.470 34.615 0.00 0.00 0.00 3.02
796 4483 5.619981 CGTTGATTCCCAGGATTCTCAAAAC 60.620 44.000 9.38 5.33 0.00 2.43
799 4486 3.263170 TCGTTGATTCCCAGGATTCTCAA 59.737 43.478 9.38 6.49 0.00 3.02
800 4487 2.837591 TCGTTGATTCCCAGGATTCTCA 59.162 45.455 9.38 1.36 0.00 3.27
810 4497 0.322546 AACTGGCCTCGTTGATTCCC 60.323 55.000 3.32 0.00 0.00 3.97
826 4513 1.270147 GCCCACTCGTGTGAAGTAACT 60.270 52.381 18.71 0.00 46.55 2.24
1086 7888 2.525629 TGGACGGAGGTGGAAGCA 60.526 61.111 0.00 0.00 36.26 3.91
1158 7960 3.055094 TCCGGATCTCAAGGAGGAAAAAG 60.055 47.826 0.00 0.00 0.00 2.27
1444 8246 2.262915 CCGATATCAGGAGCGGCC 59.737 66.667 3.12 0.00 37.08 6.13
1614 8416 5.423886 TGCAGAATACATCGGTTACATCAA 58.576 37.500 0.00 0.00 0.00 2.57
1686 8501 4.449068 AGAAACAACAGCAATACGACTCAG 59.551 41.667 0.00 0.00 0.00 3.35
1833 8769 2.963928 TATGGCATTGCGGGCTCCTG 62.964 60.000 4.78 0.00 0.00 3.86
1870 8814 2.100087 ACACACATTTTTCCCCGAACAC 59.900 45.455 0.00 0.00 0.00 3.32
2002 9138 6.243216 TGTCAGACTAAAACCACCTTAAGT 57.757 37.500 1.31 0.00 0.00 2.24
2048 9184 7.327275 CGAATATAGCTGAACATAGTCTGAACC 59.673 40.741 0.00 0.00 0.00 3.62
2310 9698 3.557595 GCATAGAGCTTGACCATGTGTAC 59.442 47.826 0.00 0.00 41.15 2.90
2311 9699 3.197549 TGCATAGAGCTTGACCATGTGTA 59.802 43.478 0.00 0.00 45.94 2.90
2358 9746 5.349270 GTGTTGACAGTAATGGTACGCATTA 59.651 40.000 10.81 10.81 35.20 1.90
2535 10013 3.120199 GCAGTTGTGTACGCTTTCATGAT 60.120 43.478 8.10 0.00 0.00 2.45
2803 10318 3.420606 CAGTGGCTGTCTGCTGCG 61.421 66.667 1.44 0.00 42.39 5.18
2824 10346 1.452651 CGACCTACGGACCTAGGCA 60.453 63.158 9.30 0.00 37.41 4.75
2828 10350 1.750399 GTGGCGACCTACGGACCTA 60.750 63.158 0.00 0.00 42.83 3.08
2829 10351 3.066814 GTGGCGACCTACGGACCT 61.067 66.667 0.00 0.00 42.83 3.85
2830 10352 4.139234 GGTGGCGACCTACGGACC 62.139 72.222 11.17 0.00 42.83 4.46
2831 10353 4.487412 CGGTGGCGACCTACGGAC 62.487 72.222 16.47 0.00 40.58 4.79
2917 10439 1.470632 CGGCTCGCTCTCTCTCATTTT 60.471 52.381 0.00 0.00 0.00 1.82
2921 10443 2.826287 CCGGCTCGCTCTCTCTCA 60.826 66.667 0.00 0.00 0.00 3.27
2988 10535 2.514458 ATGACATGGACCCTGGTTTC 57.486 50.000 0.00 0.00 0.00 2.78
3002 10549 6.097270 ACGCTTAAGGTGGTTATAGTATGACA 59.903 38.462 4.29 0.00 0.00 3.58
3012 10559 3.306919 CCTGGTAACGCTTAAGGTGGTTA 60.307 47.826 4.29 0.00 42.51 2.85
3151 10698 9.319143 GTGACTATCTTGTCATGCTAATAACTT 57.681 33.333 0.64 0.00 46.77 2.66
3184 10731 1.828979 TGTCTATTTTTCCCCCACGC 58.171 50.000 0.00 0.00 0.00 5.34
3191 10738 9.717942 ATCACTAGAGCATATGTCTATTTTTCC 57.282 33.333 4.29 0.00 0.00 3.13
3205 10752 2.294791 GACCGCTACATCACTAGAGCAT 59.705 50.000 0.00 0.00 34.49 3.79
3249 10796 1.428448 CACCATTTCTTCGACGCAGA 58.572 50.000 0.00 0.00 0.00 4.26
3252 10799 1.134694 GGCACCATTTCTTCGACGC 59.865 57.895 0.00 0.00 0.00 5.19
3335 10882 7.068103 ACAACAATTGGTTAGAATCAGTCACAA 59.932 33.333 10.83 0.00 37.72 3.33
3422 10969 1.410004 TAATCCTACTGCCGTCAGGG 58.590 55.000 0.00 0.00 44.54 4.45
3593 11937 9.593134 AAATGAGCAAACAAATACACTAAAACA 57.407 25.926 0.00 0.00 0.00 2.83
3988 12383 8.542953 TCGATCATCATAAATTGAAGAAACGAG 58.457 33.333 0.00 0.00 38.57 4.18
4203 12618 7.606456 TCGCATGGTTTTCTAATTCTAACTCTT 59.394 33.333 0.00 0.00 0.00 2.85
4252 12667 2.726832 AGTAGTCTTCAGCACCGTTC 57.273 50.000 0.00 0.00 0.00 3.95
4733 13151 5.756833 AGTTGTGTAAGGTAAACGAAGGAAG 59.243 40.000 0.00 0.00 0.00 3.46
4763 13181 0.607489 AGTGGCTCAACATCACTGGC 60.607 55.000 0.00 0.00 39.89 4.85
4790 13208 6.974932 ACTATTATCTTTGATATGGCTGCG 57.025 37.500 0.00 0.00 0.00 5.18
4804 13222 8.686334 CAATGCCACAAGGTAAAACTATTATCT 58.314 33.333 0.00 0.00 37.19 1.98
4808 13226 6.664428 ACAATGCCACAAGGTAAAACTATT 57.336 33.333 0.00 0.00 37.19 1.73
4810 13228 5.182380 GCTACAATGCCACAAGGTAAAACTA 59.818 40.000 0.00 0.00 37.19 2.24
4832 13250 7.385267 TGTTTTGAATTGCTAACAATATGGCT 58.615 30.769 0.00 0.00 45.90 4.75
4833 13251 7.593875 TGTTTTGAATTGCTAACAATATGGC 57.406 32.000 0.00 0.00 45.90 4.40
4834 13252 9.976255 CATTGTTTTGAATTGCTAACAATATGG 57.024 29.630 15.45 6.05 45.90 2.74
4837 13255 9.755804 TCACATTGTTTTGAATTGCTAACAATA 57.244 25.926 15.45 4.60 45.90 1.90
4839 13257 8.659925 ATCACATTGTTTTGAATTGCTAACAA 57.340 26.923 0.00 0.00 42.57 2.83
4840 13258 9.409312 CTATCACATTGTTTTGAATTGCTAACA 57.591 29.630 0.00 0.00 0.00 2.41
4841 13259 8.375465 GCTATCACATTGTTTTGAATTGCTAAC 58.625 33.333 0.00 0.00 0.00 2.34
4842 13260 7.545265 GGCTATCACATTGTTTTGAATTGCTAA 59.455 33.333 0.00 0.00 0.00 3.09
4896 13314 6.038271 GGCTACCTACACCATAATCAAAGTTG 59.962 42.308 0.00 0.00 0.00 3.16
4902 13320 3.069016 CGTGGCTACCTACACCATAATCA 59.931 47.826 0.00 0.00 35.53 2.57
4910 13328 3.241067 TCAATTCGTGGCTACCTACAC 57.759 47.619 0.00 0.00 0.00 2.90
4920 13338 6.908870 TCATTCTCAAGTATCAATTCGTGG 57.091 37.500 0.00 0.00 0.00 4.94
4946 13365 4.889409 CCATAATGGGCACACTAAATCAGT 59.111 41.667 0.00 0.00 33.41 3.41
4950 13369 5.957774 AGAAACCATAATGGGCACACTAAAT 59.042 36.000 0.00 0.00 43.37 1.40
4955 13374 2.427095 GGAGAAACCATAATGGGCACAC 59.573 50.000 0.00 0.00 43.37 3.82
4960 13387 4.599041 TGAACAGGAGAAACCATAATGGG 58.401 43.478 0.00 0.00 43.37 4.00
4964 13391 3.686016 GGCTGAACAGGAGAAACCATAA 58.314 45.455 3.99 0.00 42.04 1.90
4970 13397 1.134220 ACAACGGCTGAACAGGAGAAA 60.134 47.619 0.00 0.00 0.00 2.52
4985 13412 1.151777 CGGCCAGGCATAGTACAACG 61.152 60.000 15.19 0.00 0.00 4.10
5004 13452 4.705337 AACAGATAAGACTCCGACAGAC 57.295 45.455 0.00 0.00 0.00 3.51
5018 13466 6.837048 TGGGTAATCACAGCTAGTAACAGATA 59.163 38.462 0.00 0.00 0.00 1.98
5019 13467 5.661312 TGGGTAATCACAGCTAGTAACAGAT 59.339 40.000 0.00 0.00 0.00 2.90
5020 13468 5.020795 TGGGTAATCACAGCTAGTAACAGA 58.979 41.667 0.00 0.00 0.00 3.41
5021 13469 5.109903 GTGGGTAATCACAGCTAGTAACAG 58.890 45.833 0.00 0.00 37.57 3.16
5022 13470 4.528987 TGTGGGTAATCACAGCTAGTAACA 59.471 41.667 0.00 0.00 42.05 2.41
5023 13471 5.080969 TGTGGGTAATCACAGCTAGTAAC 57.919 43.478 0.00 0.00 42.05 2.50
5033 13481 8.345565 GTTGATCAAGATTATGTGGGTAATCAC 58.654 37.037 8.80 0.00 41.42 3.06
5034 13482 8.052141 TGTTGATCAAGATTATGTGGGTAATCA 58.948 33.333 8.80 0.00 41.42 2.57
5035 13483 8.450578 TGTTGATCAAGATTATGTGGGTAATC 57.549 34.615 8.80 0.00 40.01 1.75
5036 13484 7.503566 CCTGTTGATCAAGATTATGTGGGTAAT 59.496 37.037 8.80 0.00 0.00 1.89
5037 13485 6.828273 CCTGTTGATCAAGATTATGTGGGTAA 59.172 38.462 8.80 0.00 0.00 2.85
5038 13486 6.069673 ACCTGTTGATCAAGATTATGTGGGTA 60.070 38.462 8.80 0.00 0.00 3.69
5041 13489 5.007039 CGACCTGTTGATCAAGATTATGTGG 59.993 44.000 8.80 6.57 0.00 4.17
5059 13507 3.915437 AAACATACCAAAAGCGACCTG 57.085 42.857 0.00 0.00 0.00 4.00
5098 13546 3.386932 TTGATTTTGGGATGGAGGGAG 57.613 47.619 0.00 0.00 0.00 4.30
5100 13548 6.752285 ATATTTTGATTTTGGGATGGAGGG 57.248 37.500 0.00 0.00 0.00 4.30
5101 13549 9.146586 TCTTATATTTTGATTTTGGGATGGAGG 57.853 33.333 0.00 0.00 0.00 4.30
5122 13570 9.355916 GCTAGGAAAGGGTTTAAATGATCTTAT 57.644 33.333 0.00 0.00 0.00 1.73
5123 13571 7.778382 GGCTAGGAAAGGGTTTAAATGATCTTA 59.222 37.037 0.00 0.00 0.00 2.10
5124 13572 6.607600 GGCTAGGAAAGGGTTTAAATGATCTT 59.392 38.462 0.00 0.00 0.00 2.40
5125 13573 6.129874 GGCTAGGAAAGGGTTTAAATGATCT 58.870 40.000 0.00 0.00 0.00 2.75
5128 13576 4.293901 AGGGCTAGGAAAGGGTTTAAATGA 59.706 41.667 0.00 0.00 0.00 2.57
5129 13577 4.610333 AGGGCTAGGAAAGGGTTTAAATG 58.390 43.478 0.00 0.00 0.00 2.32
5130 13578 4.967209 AGGGCTAGGAAAGGGTTTAAAT 57.033 40.909 0.00 0.00 0.00 1.40
5132 13580 4.355889 AGAAAGGGCTAGGAAAGGGTTTAA 59.644 41.667 0.00 0.00 0.00 1.52
5133 13581 3.920841 AGAAAGGGCTAGGAAAGGGTTTA 59.079 43.478 0.00 0.00 0.00 2.01
5134 13582 2.722458 AGAAAGGGCTAGGAAAGGGTTT 59.278 45.455 0.00 0.00 0.00 3.27
5135 13583 2.309162 GAGAAAGGGCTAGGAAAGGGTT 59.691 50.000 0.00 0.00 0.00 4.11
5139 13587 2.498078 AGTCGAGAAAGGGCTAGGAAAG 59.502 50.000 0.00 0.00 0.00 2.62
5140 13588 2.537143 AGTCGAGAAAGGGCTAGGAAA 58.463 47.619 0.00 0.00 0.00 3.13
5141 13589 2.233305 AGTCGAGAAAGGGCTAGGAA 57.767 50.000 0.00 0.00 0.00 3.36
5142 13590 1.825474 CAAGTCGAGAAAGGGCTAGGA 59.175 52.381 0.00 0.00 0.00 2.94
5143 13591 1.825474 TCAAGTCGAGAAAGGGCTAGG 59.175 52.381 0.00 0.00 0.00 3.02
5144 13592 3.131223 TCATCAAGTCGAGAAAGGGCTAG 59.869 47.826 0.00 0.00 0.00 3.42
5145 13593 3.096852 TCATCAAGTCGAGAAAGGGCTA 58.903 45.455 0.00 0.00 0.00 3.93
5146 13594 1.902508 TCATCAAGTCGAGAAAGGGCT 59.097 47.619 0.00 0.00 0.00 5.19
5147 13595 2.386661 TCATCAAGTCGAGAAAGGGC 57.613 50.000 0.00 0.00 0.00 5.19
5148 13596 3.931578 AGTTCATCAAGTCGAGAAAGGG 58.068 45.455 0.00 0.00 0.00 3.95
5149 13597 4.153117 CCAAGTTCATCAAGTCGAGAAAGG 59.847 45.833 0.00 0.00 0.00 3.11
5150 13598 4.752101 ACCAAGTTCATCAAGTCGAGAAAG 59.248 41.667 0.00 0.00 0.00 2.62
5151 13599 4.703897 ACCAAGTTCATCAAGTCGAGAAA 58.296 39.130 0.00 0.00 0.00 2.52
5152 13600 4.202212 TGACCAAGTTCATCAAGTCGAGAA 60.202 41.667 0.00 0.00 0.00 2.87
5153 13601 3.320826 TGACCAAGTTCATCAAGTCGAGA 59.679 43.478 0.00 0.00 0.00 4.04
5154 13602 3.653344 TGACCAAGTTCATCAAGTCGAG 58.347 45.455 0.00 0.00 0.00 4.04
5155 13603 3.744238 TGACCAAGTTCATCAAGTCGA 57.256 42.857 0.00 0.00 0.00 4.20
5156 13604 5.180117 AGAATTGACCAAGTTCATCAAGTCG 59.820 40.000 15.26 0.00 46.63 4.18
5157 13605 6.566197 AGAATTGACCAAGTTCATCAAGTC 57.434 37.500 14.13 14.13 44.00 3.01
5158 13606 6.293626 CGAAGAATTGACCAAGTTCATCAAGT 60.294 38.462 4.97 2.41 35.89 3.16
5159 13607 6.073058 TCGAAGAATTGACCAAGTTCATCAAG 60.073 38.462 4.97 0.00 35.89 3.02
5160 13608 5.762711 TCGAAGAATTGACCAAGTTCATCAA 59.237 36.000 1.72 1.72 36.81 2.57
5161 13609 5.179368 GTCGAAGAATTGACCAAGTTCATCA 59.821 40.000 0.00 0.00 39.69 3.07
5162 13610 5.622378 GTCGAAGAATTGACCAAGTTCATC 58.378 41.667 0.00 0.00 39.69 2.92
5163 13611 5.613358 GTCGAAGAATTGACCAAGTTCAT 57.387 39.130 0.00 0.00 39.69 2.57
5172 13620 2.003301 GCTCCAGGTCGAAGAATTGAC 58.997 52.381 0.00 0.00 39.69 3.18
5173 13621 1.066143 GGCTCCAGGTCGAAGAATTGA 60.066 52.381 0.00 0.00 39.69 2.57
5174 13622 1.339055 TGGCTCCAGGTCGAAGAATTG 60.339 52.381 0.00 0.00 39.69 2.32
5175 13623 0.984230 TGGCTCCAGGTCGAAGAATT 59.016 50.000 0.00 0.00 39.69 2.17
5176 13624 0.984230 TTGGCTCCAGGTCGAAGAAT 59.016 50.000 0.00 0.00 39.69 2.40
5177 13625 0.034896 GTTGGCTCCAGGTCGAAGAA 59.965 55.000 0.00 0.00 39.69 2.52
5178 13626 1.118965 TGTTGGCTCCAGGTCGAAGA 61.119 55.000 0.00 0.00 0.00 2.87
5179 13627 0.036010 ATGTTGGCTCCAGGTCGAAG 60.036 55.000 0.00 0.00 0.00 3.79
5180 13628 0.400213 AATGTTGGCTCCAGGTCGAA 59.600 50.000 0.00 0.00 0.00 3.71
5181 13629 0.321564 CAATGTTGGCTCCAGGTCGA 60.322 55.000 0.00 0.00 0.00 4.20
5182 13630 0.321564 TCAATGTTGGCTCCAGGTCG 60.322 55.000 0.00 0.00 0.00 4.79
5183 13631 1.168714 GTCAATGTTGGCTCCAGGTC 58.831 55.000 0.00 0.00 0.00 3.85
5184 13632 0.251341 GGTCAATGTTGGCTCCAGGT 60.251 55.000 0.00 0.00 32.28 4.00
5185 13633 0.038744 AGGTCAATGTTGGCTCCAGG 59.961 55.000 0.00 0.00 32.28 4.45
5186 13634 1.004044 AGAGGTCAATGTTGGCTCCAG 59.996 52.381 0.00 0.00 32.28 3.86
5187 13635 1.067295 AGAGGTCAATGTTGGCTCCA 58.933 50.000 0.00 0.00 32.28 3.86
5188 13636 2.206576 AAGAGGTCAATGTTGGCTCC 57.793 50.000 0.00 0.00 32.28 4.70
5189 13637 3.057245 GGAAAAGAGGTCAATGTTGGCTC 60.057 47.826 0.00 0.00 32.28 4.70
5190 13638 2.893489 GGAAAAGAGGTCAATGTTGGCT 59.107 45.455 0.00 0.00 32.28 4.75
5191 13639 2.627699 TGGAAAAGAGGTCAATGTTGGC 59.372 45.455 0.00 0.00 0.00 4.52
5192 13640 4.501400 GGTTGGAAAAGAGGTCAATGTTGG 60.501 45.833 0.00 0.00 0.00 3.77
5193 13641 4.099266 TGGTTGGAAAAGAGGTCAATGTTG 59.901 41.667 0.00 0.00 0.00 3.33
5194 13642 4.099419 GTGGTTGGAAAAGAGGTCAATGTT 59.901 41.667 0.00 0.00 0.00 2.71
5195 13643 3.636764 GTGGTTGGAAAAGAGGTCAATGT 59.363 43.478 0.00 0.00 0.00 2.71
5196 13644 3.636300 TGTGGTTGGAAAAGAGGTCAATG 59.364 43.478 0.00 0.00 0.00 2.82
5197 13645 3.909732 TGTGGTTGGAAAAGAGGTCAAT 58.090 40.909 0.00 0.00 0.00 2.57
5198 13646 3.374042 TGTGGTTGGAAAAGAGGTCAA 57.626 42.857 0.00 0.00 0.00 3.18
5199 13647 3.020984 GTTGTGGTTGGAAAAGAGGTCA 58.979 45.455 0.00 0.00 0.00 4.02
5200 13648 3.288092 AGTTGTGGTTGGAAAAGAGGTC 58.712 45.455 0.00 0.00 0.00 3.85
5201 13649 3.382083 AGTTGTGGTTGGAAAAGAGGT 57.618 42.857 0.00 0.00 0.00 3.85
5202 13650 4.461198 AGTAGTTGTGGTTGGAAAAGAGG 58.539 43.478 0.00 0.00 0.00 3.69
5203 13651 4.515567 GGAGTAGTTGTGGTTGGAAAAGAG 59.484 45.833 0.00 0.00 0.00 2.85
5204 13652 4.457466 GGAGTAGTTGTGGTTGGAAAAGA 58.543 43.478 0.00 0.00 0.00 2.52
5205 13653 3.568430 GGGAGTAGTTGTGGTTGGAAAAG 59.432 47.826 0.00 0.00 0.00 2.27
5206 13654 3.558033 GGGAGTAGTTGTGGTTGGAAAA 58.442 45.455 0.00 0.00 0.00 2.29
5207 13655 2.485835 CGGGAGTAGTTGTGGTTGGAAA 60.486 50.000 0.00 0.00 0.00 3.13
5208 13656 1.071071 CGGGAGTAGTTGTGGTTGGAA 59.929 52.381 0.00 0.00 0.00 3.53
5209 13657 0.682852 CGGGAGTAGTTGTGGTTGGA 59.317 55.000 0.00 0.00 0.00 3.53
5210 13658 0.395312 ACGGGAGTAGTTGTGGTTGG 59.605 55.000 0.00 0.00 44.60 3.77
5223 13671 7.801716 TTTGGAATATATTTTGAGACGGGAG 57.198 36.000 0.00 0.00 0.00 4.30
5224 13672 8.629158 CATTTTGGAATATATTTTGAGACGGGA 58.371 33.333 0.00 0.00 0.00 5.14
5225 13673 8.413229 ACATTTTGGAATATATTTTGAGACGGG 58.587 33.333 0.00 0.00 0.00 5.28
5260 13708 9.356433 TCGACACGACTTATGATAATGTAAAAA 57.644 29.630 0.00 0.00 0.00 1.94
5261 13709 8.914328 TCGACACGACTTATGATAATGTAAAA 57.086 30.769 0.00 0.00 0.00 1.52
5262 13710 9.524106 AATCGACACGACTTATGATAATGTAAA 57.476 29.630 0.00 0.00 39.18 2.01
5263 13711 9.524106 AAATCGACACGACTTATGATAATGTAA 57.476 29.630 0.00 0.00 39.18 2.41
5264 13712 9.177304 GAAATCGACACGACTTATGATAATGTA 57.823 33.333 0.00 0.00 39.18 2.29
5265 13713 7.169308 GGAAATCGACACGACTTATGATAATGT 59.831 37.037 0.00 0.00 39.18 2.71
5266 13714 7.382488 AGGAAATCGACACGACTTATGATAATG 59.618 37.037 0.00 0.00 39.18 1.90
5267 13715 7.434492 AGGAAATCGACACGACTTATGATAAT 58.566 34.615 0.00 0.00 39.18 1.28
5268 13716 6.802608 AGGAAATCGACACGACTTATGATAA 58.197 36.000 0.00 0.00 39.18 1.75
5269 13717 6.387041 AGGAAATCGACACGACTTATGATA 57.613 37.500 0.00 0.00 39.18 2.15
5270 13718 5.263968 AGGAAATCGACACGACTTATGAT 57.736 39.130 0.00 0.00 39.18 2.45
5271 13719 4.439700 GGAGGAAATCGACACGACTTATGA 60.440 45.833 0.00 0.00 39.18 2.15
5272 13720 3.797256 GGAGGAAATCGACACGACTTATG 59.203 47.826 0.00 0.00 39.18 1.90
5273 13721 3.446161 TGGAGGAAATCGACACGACTTAT 59.554 43.478 0.00 0.00 39.18 1.73
5274 13722 2.821378 TGGAGGAAATCGACACGACTTA 59.179 45.455 0.00 0.00 39.18 2.24
5275 13723 1.616865 TGGAGGAAATCGACACGACTT 59.383 47.619 0.00 0.00 39.18 3.01
5276 13724 1.202582 CTGGAGGAAATCGACACGACT 59.797 52.381 0.00 0.00 39.18 4.18
5277 13725 1.630148 CTGGAGGAAATCGACACGAC 58.370 55.000 0.00 0.00 39.18 4.34
5278 13726 0.530744 CCTGGAGGAAATCGACACGA 59.469 55.000 0.00 0.00 37.61 4.35
5279 13727 0.246635 ACCTGGAGGAAATCGACACG 59.753 55.000 0.00 0.00 38.94 4.49
5280 13728 1.736032 CGACCTGGAGGAAATCGACAC 60.736 57.143 0.00 0.00 34.38 3.67
5281 13729 0.530744 CGACCTGGAGGAAATCGACA 59.469 55.000 0.00 0.00 34.38 4.35
5282 13730 0.806492 GCGACCTGGAGGAAATCGAC 60.806 60.000 0.00 0.00 34.38 4.20
5283 13731 1.254975 TGCGACCTGGAGGAAATCGA 61.255 55.000 0.00 0.00 34.38 3.59
5284 13732 0.179073 ATGCGACCTGGAGGAAATCG 60.179 55.000 0.00 0.00 38.94 3.34
5285 13733 2.910688 TATGCGACCTGGAGGAAATC 57.089 50.000 0.00 0.00 38.94 2.17
5286 13734 3.392616 AGATTATGCGACCTGGAGGAAAT 59.607 43.478 0.00 0.00 38.94 2.17
5287 13735 2.771943 AGATTATGCGACCTGGAGGAAA 59.228 45.455 0.00 0.00 38.94 3.13
5288 13736 2.398588 AGATTATGCGACCTGGAGGAA 58.601 47.619 0.00 0.00 38.94 3.36
5289 13737 2.088104 AGATTATGCGACCTGGAGGA 57.912 50.000 0.00 0.00 38.94 3.71
5290 13738 2.103094 TCAAGATTATGCGACCTGGAGG 59.897 50.000 0.00 0.00 42.17 4.30
5291 13739 3.388308 CTCAAGATTATGCGACCTGGAG 58.612 50.000 0.00 0.00 0.00 3.86
5292 13740 2.483714 GCTCAAGATTATGCGACCTGGA 60.484 50.000 0.00 0.00 0.00 3.86
5293 13741 1.869767 GCTCAAGATTATGCGACCTGG 59.130 52.381 0.00 0.00 0.00 4.45
5294 13742 2.554142 TGCTCAAGATTATGCGACCTG 58.446 47.619 0.00 0.00 0.00 4.00
5295 13743 2.988010 TGCTCAAGATTATGCGACCT 57.012 45.000 0.00 0.00 0.00 3.85
5296 13744 4.991056 TCTATTGCTCAAGATTATGCGACC 59.009 41.667 0.00 0.00 0.00 4.79
5297 13745 6.367149 TGATCTATTGCTCAAGATTATGCGAC 59.633 38.462 0.00 0.00 32.60 5.19
5298 13746 6.367149 GTGATCTATTGCTCAAGATTATGCGA 59.633 38.462 0.00 0.00 32.60 5.10
5312 13760 7.405769 GTTTCTTAGCAGAAGTGATCTATTGC 58.594 38.462 0.00 0.00 40.28 3.56
5326 13774 2.832672 GGAATGCCGTTTCTTAGCAG 57.167 50.000 0.00 0.00 40.40 4.24
5355 13803 3.070018 CCCAGTTTTTGCACACACAAAA 58.930 40.909 0.00 0.00 45.29 2.44
5358 13806 0.534412 CCCCAGTTTTTGCACACACA 59.466 50.000 0.00 0.00 0.00 3.72
5359 13807 0.820871 TCCCCAGTTTTTGCACACAC 59.179 50.000 0.00 0.00 0.00 3.82
5360 13808 1.480137 CTTCCCCAGTTTTTGCACACA 59.520 47.619 0.00 0.00 0.00 3.72
5564 14020 1.037579 GGAGTTTGGGGTATGCTGGC 61.038 60.000 0.00 0.00 0.00 4.85
5571 14027 0.035820 GATGCGTGGAGTTTGGGGTA 60.036 55.000 0.00 0.00 0.00 3.69
5661 14126 0.389948 CTTCGCTCCGTGTAGGCTTT 60.390 55.000 0.00 0.00 40.77 3.51
5693 14161 2.124695 GCAAGCGGGGGAACTAGG 60.125 66.667 0.00 0.00 0.00 3.02
5724 14192 4.479993 GGCATCAGGGCGCTCACT 62.480 66.667 11.40 1.29 33.57 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.