Multiple sequence alignment - TraesCS2A01G347800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G347800 chr2A 100.000 5702 0 0 1 5702 586445202 586450903 0.000000e+00 10530.0
1 TraesCS2A01G347800 chr2A 85.256 156 22 1 1287 1442 18322541 18322387 5.910000e-35 159.0
2 TraesCS2A01G347800 chr2D 97.093 4884 89 17 3 4861 442975840 442980695 0.000000e+00 8183.0
3 TraesCS2A01G347800 chr2D 88.864 880 44 19 4869 5702 442982363 442983234 0.000000e+00 1033.0
4 TraesCS2A01G347800 chr2B 96.638 2915 76 6 788 3697 522079226 522082123 0.000000e+00 4820.0
5 TraesCS2A01G347800 chr2B 92.582 2076 70 26 3684 5702 522082140 522084188 0.000000e+00 2904.0
6 TraesCS2A01G347800 chr2B 87.985 799 52 18 3 778 522078145 522078922 0.000000e+00 904.0
7 TraesCS2A01G347800 chr2B 83.373 415 41 15 1541 1927 182254422 182254008 5.430000e-95 359.0
8 TraesCS2A01G347800 chr2B 90.000 280 24 3 1538 1815 283295414 283295691 5.430000e-95 359.0
9 TraesCS2A01G347800 chr2B 85.397 315 33 3 3252 3554 283295962 283296275 1.190000e-81 315.0
10 TraesCS2A01G347800 chr2B 81.108 397 54 17 379 761 283294174 283294563 1.200000e-76 298.0
11 TraesCS2A01G347800 chr2B 83.067 313 31 10 3252 3552 182253879 182253577 1.220000e-66 265.0
12 TraesCS2A01G347800 chr1B 85.103 584 64 16 1442 2013 357238307 357238879 4.950000e-160 575.0
13 TraesCS2A01G347800 chr1B 79.716 705 82 31 379 1046 357237425 357238105 2.420000e-123 453.0
14 TraesCS2A01G347800 chr1B 83.636 220 21 8 1070 1289 357238101 357238305 5.830000e-45 193.0
15 TraesCS2A01G347800 chr4B 83.493 418 39 17 1538 1927 195450940 195451355 4.200000e-96 363.0
16 TraesCS2A01G347800 chr4B 84.494 316 34 5 3252 3554 195451484 195451797 1.200000e-76 298.0
17 TraesCS2A01G347800 chr3B 83.513 279 38 8 2403 2676 479852440 479852165 2.640000e-63 254.0
18 TraesCS2A01G347800 chr3D 88.462 156 18 0 1289 1444 441388819 441388664 7.540000e-44 189.0
19 TraesCS2A01G347800 chr3D 85.065 154 22 1 1288 1441 375193911 375193759 7.650000e-34 156.0
20 TraesCS2A01G347800 chr3A 87.821 156 19 0 1289 1444 582283367 582283212 3.510000e-42 183.0
21 TraesCS2A01G347800 chr3A 86.364 154 20 1 1288 1441 498230087 498229935 3.530000e-37 167.0
22 TraesCS2A01G347800 chr6B 87.179 156 19 1 1289 1444 468734617 468734463 5.870000e-40 176.0
23 TraesCS2A01G347800 chr6B 86.538 52 7 0 2559 2610 554033901 554033850 2.220000e-04 58.4
24 TraesCS2A01G347800 chr7A 84.615 169 24 2 1286 1452 511930528 511930696 3.530000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G347800 chr2A 586445202 586450903 5701 False 10530.0 10530 100.000000 1 5702 1 chr2A.!!$F1 5701
1 TraesCS2A01G347800 chr2D 442975840 442983234 7394 False 4608.0 8183 92.978500 3 5702 2 chr2D.!!$F1 5699
2 TraesCS2A01G347800 chr2B 522078145 522084188 6043 False 2876.0 4820 92.401667 3 5702 3 chr2B.!!$F2 5699
3 TraesCS2A01G347800 chr2B 283294174 283296275 2101 False 324.0 359 85.501667 379 3554 3 chr2B.!!$F1 3175
4 TraesCS2A01G347800 chr2B 182253577 182254422 845 True 312.0 359 83.220000 1541 3552 2 chr2B.!!$R1 2011
5 TraesCS2A01G347800 chr1B 357237425 357238879 1454 False 407.0 575 82.818333 379 2013 3 chr1B.!!$F1 1634
6 TraesCS2A01G347800 chr4B 195450940 195451797 857 False 330.5 363 83.993500 1538 3554 2 chr4B.!!$F1 2016


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 469 0.461548 GCTCCATTTTTAGCTGGCCC 59.538 55.000 0.00 0.0 35.80 5.80 F
522 549 1.338020 CCAACAAGGTTGCTGGAGTTC 59.662 52.381 6.32 0.0 45.08 3.01 F
2602 3415 1.069432 GGCATTACATCATCTGCTGCG 60.069 52.381 0.00 0.0 35.03 5.18 F
2747 3560 1.064060 GGAGCGAAACAATGGATTCCG 59.936 52.381 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2858 2.100749 GGGCCTGCAATACAATAACCAC 59.899 50.000 0.84 0.0 0.00 4.16 R
2632 3445 1.546548 GCCTGGGCTCTTTCAAGAAGT 60.547 52.381 4.12 0.0 38.26 3.01 R
3439 4261 0.460811 GCTCATCGATGCACTCACCA 60.461 55.000 20.81 0.0 0.00 4.17 R
4862 5748 0.608856 TGTTCCGGGAGCACGTACTA 60.609 55.000 9.73 0.0 0.00 1.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.465632 TCGAATTATATGACGATGGGGG 57.534 45.455 0.00 0.00 0.00 5.40
102 103 4.237843 TCCTCATGGATTAGAGCTCCAAT 58.762 43.478 10.93 8.89 45.57 3.16
142 143 4.404394 TGGAGATGGAATTCGTGTAGCTTA 59.596 41.667 0.00 0.00 0.00 3.09
177 186 6.131544 ACGACCTTATTTATTCAATGTGGC 57.868 37.500 0.00 0.00 0.00 5.01
197 206 6.652062 TGTGGCTGAATATATGCTGACAATAG 59.348 38.462 7.68 0.00 0.00 1.73
250 259 2.224426 ACCAGACGTGTTGGCTCATTTA 60.224 45.455 14.06 0.00 39.39 1.40
264 273 8.347035 GTTGGCTCATTTACTAAAAACTACACA 58.653 33.333 0.00 0.00 0.00 3.72
394 413 1.509787 CGCAAACAACTCGCATCCG 60.510 57.895 0.00 0.00 0.00 4.18
450 469 0.461548 GCTCCATTTTTAGCTGGCCC 59.538 55.000 0.00 0.00 35.80 5.80
522 549 1.338020 CCAACAAGGTTGCTGGAGTTC 59.662 52.381 6.32 0.00 45.08 3.01
778 997 6.599244 GCCATTTATGTAAGCTATAGGCATCA 59.401 38.462 1.04 0.00 44.79 3.07
779 998 7.201679 GCCATTTATGTAAGCTATAGGCATCAG 60.202 40.741 1.04 0.00 44.79 2.90
781 1000 9.224267 CATTTATGTAAGCTATAGGCATCAGTT 57.776 33.333 1.04 0.00 44.79 3.16
782 1001 8.833231 TTTATGTAAGCTATAGGCATCAGTTC 57.167 34.615 1.04 0.00 44.79 3.01
783 1002 5.869649 TGTAAGCTATAGGCATCAGTTCA 57.130 39.130 1.04 0.00 44.79 3.18
784 1003 6.233905 TGTAAGCTATAGGCATCAGTTCAA 57.766 37.500 1.04 0.00 44.79 2.69
785 1004 6.283694 TGTAAGCTATAGGCATCAGTTCAAG 58.716 40.000 1.04 0.00 44.79 3.02
1057 1570 3.026694 GCTGGCAATTGGAAGGTAATCT 58.973 45.455 7.72 0.00 0.00 2.40
1103 1616 7.010738 CCAAAAGCTATTAATTCAGCAATGGTG 59.989 37.037 6.03 6.03 40.36 4.17
1116 1635 5.355071 TCAGCAATGGTGATGAGATTGTAAC 59.645 40.000 11.44 0.00 45.03 2.50
1166 1685 6.252599 AGATATAGGAAGGCATTGAACACA 57.747 37.500 0.00 0.00 0.00 3.72
1309 1829 5.790593 TGTACTCCCTCTGTTCACAAATAC 58.209 41.667 0.00 0.00 0.00 1.89
1368 1888 4.405358 AGACTGAAATGGGAAAACAAGCAA 59.595 37.500 0.00 0.00 0.00 3.91
1382 1902 5.835113 AACAAGCAAACTACAACATGTCT 57.165 34.783 0.00 0.00 0.00 3.41
1383 1903 6.935741 AACAAGCAAACTACAACATGTCTA 57.064 33.333 0.00 0.00 0.00 2.59
1897 2701 8.568676 AGCTTATCAGACTATGTATACACGAT 57.431 34.615 7.96 6.39 0.00 3.73
1969 2778 3.438087 ACAATCTCGCTCATCAAACTTGG 59.562 43.478 0.00 0.00 0.00 3.61
1975 2784 3.055458 TCGCTCATCAAACTTGGTGGATA 60.055 43.478 2.96 0.00 39.72 2.59
2049 2858 6.527722 AGCAATGCAATGTTCTGTATTTAACG 59.472 34.615 8.35 0.00 30.28 3.18
2602 3415 1.069432 GGCATTACATCATCTGCTGCG 60.069 52.381 0.00 0.00 35.03 5.18
2632 3445 6.849085 ACTGAGAGAAGAGCAATTAGAAGA 57.151 37.500 0.00 0.00 0.00 2.87
2747 3560 1.064060 GGAGCGAAACAATGGATTCCG 59.936 52.381 0.00 0.00 0.00 4.30
2802 3615 5.826737 CCTTCACTTCAATATCCAGCTCAAT 59.173 40.000 0.00 0.00 0.00 2.57
2823 3636 4.510167 TTGATCTCCAAGGAAATCTCCC 57.490 45.455 4.22 0.00 43.64 4.30
3439 4261 1.966451 GCGTGTGCTAAGCAAGGGT 60.966 57.895 0.00 0.00 41.47 4.34
3440 4262 1.868997 CGTGTGCTAAGCAAGGGTG 59.131 57.895 0.00 0.00 41.47 4.61
3491 4313 1.376553 GAGCAGGTCAGGTTCCAGC 60.377 63.158 0.00 0.00 37.67 4.85
3541 4369 4.159244 TGTGGGTGCTAATGGTATTACC 57.841 45.455 5.87 5.87 39.22 2.85
3616 4444 1.002624 GGAGGTCGGAACAATGGCA 60.003 57.895 0.00 0.00 0.00 4.92
3680 4508 8.127327 CACATACAGATCATTCATTCCTGTTTC 58.873 37.037 0.00 0.00 38.76 2.78
3688 4547 6.546484 TCATTCATTCCTGTTTCTTTCTCCT 58.454 36.000 0.00 0.00 0.00 3.69
3792 4651 2.698855 TTTCAGCTCTATGTCTGCCC 57.301 50.000 0.00 0.00 0.00 5.36
4508 5373 0.616111 GAACAGGAGGAGGAGGAGCA 60.616 60.000 0.00 0.00 0.00 4.26
4509 5374 0.617249 AACAGGAGGAGGAGGAGCAG 60.617 60.000 0.00 0.00 0.00 4.24
4510 5375 2.042025 AGGAGGAGGAGGAGCAGC 60.042 66.667 0.00 0.00 0.00 5.25
4511 5376 2.364842 GGAGGAGGAGGAGCAGCA 60.365 66.667 0.00 0.00 0.00 4.41
4512 5377 2.433994 GGAGGAGGAGGAGCAGCAG 61.434 68.421 0.00 0.00 0.00 4.24
4513 5378 3.082701 AGGAGGAGGAGCAGCAGC 61.083 66.667 0.00 0.00 42.56 5.25
4536 5401 1.378250 GCAGCAACAGCAGGAGGAT 60.378 57.895 0.00 0.00 0.00 3.24
4729 5600 4.267349 AGAATGTGTGGTGGTACTGTAC 57.733 45.455 9.46 9.46 0.00 2.90
4758 5629 1.130955 CACCAAAAATGTGTGCGCTC 58.869 50.000 9.73 5.51 0.00 5.03
4759 5630 0.317770 ACCAAAAATGTGTGCGCTCG 60.318 50.000 9.73 0.00 0.00 5.03
4760 5631 0.317770 CCAAAAATGTGTGCGCTCGT 60.318 50.000 9.73 0.00 0.00 4.18
4761 5632 0.771756 CAAAAATGTGTGCGCTCGTG 59.228 50.000 9.73 0.00 0.00 4.35
4762 5633 0.660488 AAAAATGTGTGCGCTCGTGA 59.340 45.000 9.73 0.00 0.00 4.35
4763 5634 0.660488 AAAATGTGTGCGCTCGTGAA 59.340 45.000 9.73 0.00 0.00 3.18
4764 5635 0.235665 AAATGTGTGCGCTCGTGAAG 59.764 50.000 9.73 0.00 0.00 3.02
4862 5748 6.880529 TCTCCCGTCCGAGTAAAATAATTTTT 59.119 34.615 0.00 0.00 38.56 1.94
4867 5753 9.906111 CCGTCCGAGTAAAATAATTTTTAGTAC 57.094 33.333 2.47 0.00 39.79 2.73
4985 7537 2.284405 ACTGGTCTACCCACCCCG 60.284 66.667 0.00 0.00 38.72 5.73
4986 7538 2.284405 CTGGTCTACCCACCCCGT 60.284 66.667 0.00 0.00 38.72 5.28
4987 7539 1.000739 CTGGTCTACCCACCCCGTA 59.999 63.158 0.00 0.00 38.72 4.02
4988 7540 1.305213 TGGTCTACCCACCCCGTAC 60.305 63.158 0.00 0.00 38.72 3.67
4989 7541 2.060383 GGTCTACCCACCCCGTACC 61.060 68.421 0.00 0.00 0.00 3.34
4990 7542 1.000866 GTCTACCCACCCCGTACCT 59.999 63.158 0.00 0.00 0.00 3.08
4991 7543 0.258774 GTCTACCCACCCCGTACCTA 59.741 60.000 0.00 0.00 0.00 3.08
4995 7547 0.259938 ACCCACCCCGTACCTACTAG 59.740 60.000 0.00 0.00 0.00 2.57
5034 7586 1.957186 CGACAGCGACGGGGAAAAA 60.957 57.895 0.00 0.00 40.82 1.94
5311 7890 1.142060 AGGTGTTTGACGGAATGGTGA 59.858 47.619 0.00 0.00 0.00 4.02
5312 7891 1.265905 GGTGTTTGACGGAATGGTGAC 59.734 52.381 0.00 0.00 0.00 3.67
5454 8033 1.371558 GGACGAAGGAGCCAACACT 59.628 57.895 0.00 0.00 0.00 3.55
5464 8043 0.987294 AGCCAACACTATGGTGAGCT 59.013 50.000 16.98 16.44 45.61 4.09
5478 8057 3.316029 TGGTGAGCTCATTTCTGTTTGTG 59.684 43.478 21.47 0.00 0.00 3.33
5498 8078 2.946329 TGAATAACTTGTGGCGTTGTGT 59.054 40.909 0.00 0.00 0.00 3.72
5500 8080 4.212425 TGAATAACTTGTGGCGTTGTGTAG 59.788 41.667 0.00 0.00 0.00 2.74
5535 8115 1.667830 CACGGATTGTGGCGAGTGT 60.668 57.895 0.00 0.00 45.21 3.55
5573 8153 5.220529 GCGACCTGTGTACATTATGGTTTAC 60.221 44.000 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.783256 CCATCGTCATATAATTCGATAACTGTA 57.217 33.333 8.28 0.00 40.29 2.74
16 17 1.128200 CTCCAACCCCCATCGTCATA 58.872 55.000 0.00 0.00 0.00 2.15
18 19 2.297895 CCTCCAACCCCCATCGTCA 61.298 63.158 0.00 0.00 0.00 4.35
29 30 1.079057 GCGTTCCTCCTCCTCCAAC 60.079 63.158 0.00 0.00 0.00 3.77
102 103 4.788679 TCTCCATAGTATCACCACGAAGA 58.211 43.478 0.00 0.00 0.00 2.87
156 165 7.333528 TCAGCCACATTGAATAAATAAGGTC 57.666 36.000 0.00 0.00 0.00 3.85
166 175 6.717997 TCAGCATATATTCAGCCACATTGAAT 59.282 34.615 5.86 5.86 44.86 2.57
177 186 8.033626 TGCTCTCTATTGTCAGCATATATTCAG 58.966 37.037 0.00 0.00 36.96 3.02
264 273 7.047891 TGATTTCGACAGCCTAAAGACATTAT 58.952 34.615 0.00 0.00 0.00 1.28
365 384 4.276460 GAGTTGTTTGCGTTCAAATACGT 58.724 39.130 0.00 0.00 43.32 3.57
377 396 0.179215 CTCGGATGCGAGTTGTTTGC 60.179 55.000 26.48 0.00 36.67 3.68
394 413 3.119101 TCATGGACCGAAGAGCTAAACTC 60.119 47.826 0.00 0.00 46.66 3.01
465 484 5.914898 AGGTGCTTTTGTGTCTAAAAACT 57.085 34.783 0.00 0.00 0.00 2.66
522 549 5.247507 TGCAATCGAAATTGTAAGATGGG 57.752 39.130 0.00 0.00 43.54 4.00
552 580 9.665719 GAAGAAGAAAAAGGATGTCTAATCTCT 57.334 33.333 0.00 0.00 0.00 3.10
704 919 9.926158 AAAACATGTCATCAATTAAGTATGCAA 57.074 25.926 0.00 0.00 0.00 4.08
1057 1570 0.709397 TGGAATTTGGGGATCAGCCA 59.291 50.000 0.00 0.00 38.95 4.75
1103 1616 5.645497 AGAACAGCAAGGTTACAATCTCATC 59.355 40.000 0.00 0.00 0.00 2.92
1116 1635 1.071385 AGTCCACAGAGAACAGCAAGG 59.929 52.381 0.00 0.00 0.00 3.61
1166 1685 3.518705 AGTGGAGTCAATGATCAGAAGCT 59.481 43.478 0.09 0.00 0.00 3.74
1897 2701 3.808728 AGCAGTGCAGTAAAAGAACAGA 58.191 40.909 19.20 0.00 0.00 3.41
1969 2778 5.474578 TCTCTAACATCAGGCATATCCAC 57.525 43.478 0.00 0.00 37.29 4.02
1975 2784 7.472334 AAAATTGTTCTCTAACATCAGGCAT 57.528 32.000 0.00 0.00 44.85 4.40
2049 2858 2.100749 GGGCCTGCAATACAATAACCAC 59.899 50.000 0.84 0.00 0.00 4.16
2632 3445 1.546548 GCCTGGGCTCTTTCAAGAAGT 60.547 52.381 4.12 0.00 38.26 3.01
2747 3560 1.694696 ACTTGAGGACTGGGAGTTGAC 59.305 52.381 0.00 0.00 0.00 3.18
2802 3615 4.114597 AGGGAGATTTCCTTGGAGATCAA 58.885 43.478 18.45 0.00 43.49 2.57
3439 4261 0.460811 GCTCATCGATGCACTCACCA 60.461 55.000 20.81 0.00 0.00 4.17
3440 4262 0.460811 TGCTCATCGATGCACTCACC 60.461 55.000 20.81 4.09 33.94 4.02
3491 4313 2.169978 TGAGCTCATCATCACCCTTCAG 59.830 50.000 13.74 0.00 31.12 3.02
3541 4369 1.739562 GAAGCAGGTGAGTGGCTCG 60.740 63.158 0.00 0.00 36.76 5.03
3616 4444 4.234530 GCTGACAGCAAGATTGAAAAGT 57.765 40.909 22.62 0.00 41.89 2.66
3660 4488 8.053026 AGAAAGAAACAGGAATGAATGATCTG 57.947 34.615 0.00 0.00 0.00 2.90
3665 4493 6.830873 AGGAGAAAGAAACAGGAATGAATG 57.169 37.500 0.00 0.00 0.00 2.67
3673 4501 6.039717 TGTGATTTGAAGGAGAAAGAAACAGG 59.960 38.462 0.00 0.00 0.00 4.00
3680 4508 5.528690 TGACACTGTGATTTGAAGGAGAAAG 59.471 40.000 15.86 0.00 0.00 2.62
3688 4547 6.038603 CCTTTTCTCTGACACTGTGATTTGAA 59.961 38.462 15.86 8.89 0.00 2.69
3792 4651 1.639298 GCTGCCGCTTGTTCCTACAG 61.639 60.000 0.00 0.00 35.28 2.74
4510 5375 2.255554 CTGTTGCTGCTGCTGCTG 59.744 61.111 27.67 16.73 40.48 4.41
4511 5376 3.671411 GCTGTTGCTGCTGCTGCT 61.671 61.111 27.67 0.00 40.48 4.24
4512 5377 3.898627 CTGCTGTTGCTGCTGCTGC 62.899 63.158 22.51 22.51 40.48 5.25
4513 5378 2.255554 CTGCTGTTGCTGCTGCTG 59.744 61.111 17.00 0.77 40.48 4.41
4634 5505 1.211212 TCTTGATGAGGCAGGTGATGG 59.789 52.381 0.00 0.00 0.00 3.51
4677 5548 2.311701 TTTACACTTGTCGCCGCCG 61.312 57.895 0.00 0.00 0.00 6.46
4729 5600 3.976169 ACATTTTTGGTGAATGTGACGG 58.024 40.909 2.02 0.00 43.87 4.79
4758 5629 4.685169 ATTTTACACATGGAGCTTCACG 57.315 40.909 0.00 0.00 0.00 4.35
4759 5630 6.494893 TGTATTTTACACATGGAGCTTCAC 57.505 37.500 0.00 0.00 32.89 3.18
4760 5631 6.714810 AGTTGTATTTTACACATGGAGCTTCA 59.285 34.615 0.00 0.00 38.63 3.02
4761 5632 7.145932 AGTTGTATTTTACACATGGAGCTTC 57.854 36.000 0.00 0.00 38.63 3.86
4762 5633 7.148239 GCTAGTTGTATTTTACACATGGAGCTT 60.148 37.037 0.00 0.00 38.63 3.74
4763 5634 6.316390 GCTAGTTGTATTTTACACATGGAGCT 59.684 38.462 0.00 0.00 38.63 4.09
4764 5635 6.487103 GCTAGTTGTATTTTACACATGGAGC 58.513 40.000 0.00 0.00 38.63 4.70
4862 5748 0.608856 TGTTCCGGGAGCACGTACTA 60.609 55.000 9.73 0.00 0.00 1.82
4922 7474 0.806102 CCTGGTTATGCCACGACGAG 60.806 60.000 0.00 0.00 43.61 4.18
4923 7475 1.216977 CCTGGTTATGCCACGACGA 59.783 57.895 0.00 0.00 43.61 4.20
4985 7537 2.139118 CCGCGGAGTACTAGTAGGTAC 58.861 57.143 24.07 0.00 41.47 3.34
4986 7538 1.541233 GCCGCGGAGTACTAGTAGGTA 60.541 57.143 33.48 0.00 0.00 3.08
4987 7539 0.817229 GCCGCGGAGTACTAGTAGGT 60.817 60.000 33.48 0.00 0.00 3.08
4988 7540 0.534652 AGCCGCGGAGTACTAGTAGG 60.535 60.000 33.48 0.95 0.00 3.18
4989 7541 0.867086 GAGCCGCGGAGTACTAGTAG 59.133 60.000 33.48 0.00 0.00 2.57
4990 7542 0.533755 GGAGCCGCGGAGTACTAGTA 60.534 60.000 33.48 0.00 0.00 1.82
4991 7543 1.823041 GGAGCCGCGGAGTACTAGT 60.823 63.158 33.48 0.00 0.00 2.57
4995 7547 3.539560 GATCGGAGCCGCGGAGTAC 62.540 68.421 33.48 15.48 39.59 2.73
5028 7580 2.172659 GCCGCTCGTCGTTTTTCC 59.827 61.111 0.00 0.00 36.19 3.13
5094 7646 2.445654 GAGCAGGAGGAGGAGGGG 60.446 72.222 0.00 0.00 0.00 4.79
5454 8033 5.181811 CACAAACAGAAATGAGCTCACCATA 59.818 40.000 20.97 0.00 0.00 2.74
5464 8043 7.920151 CCACAAGTTATTCACAAACAGAAATGA 59.080 33.333 0.00 0.00 0.00 2.57
5478 8057 3.619233 ACACAACGCCACAAGTTATTC 57.381 42.857 0.00 0.00 0.00 1.75
5498 8078 0.385751 GGCATACAGAGACAGCGCTA 59.614 55.000 10.99 0.00 0.00 4.26
5500 8080 1.153568 TGGCATACAGAGACAGCGC 60.154 57.895 0.00 0.00 0.00 5.92
5532 8112 1.210155 GCACCATTCGCTCCAACAC 59.790 57.895 0.00 0.00 0.00 3.32
5535 8115 2.032634 GTCGCACCATTCGCTCCAA 61.033 57.895 0.00 0.00 0.00 3.53
5573 8153 0.455633 GCAATTGCGACAAGGAGCAG 60.456 55.000 15.87 0.00 44.72 4.24
5599 8179 8.450964 ACACACAAACACATGCTTCTTATATAC 58.549 33.333 0.00 0.00 0.00 1.47



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.