Multiple sequence alignment - TraesCS2A01G346900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G346900 chr2A 100.000 3767 0 0 1 3767 585208553 585212319 0.000000e+00 6957.0
1 TraesCS2A01G346900 chr2A 91.453 117 10 0 761 877 625011327 625011443 1.080000e-35 161.0
2 TraesCS2A01G346900 chr2B 95.401 2892 119 10 878 3767 519181962 519184841 0.000000e+00 4591.0
3 TraesCS2A01G346900 chr2B 90.625 96 9 0 136 231 583771838 583771743 1.100000e-25 128.0
4 TraesCS2A01G346900 chr2B 80.723 83 16 0 250 332 319427087 319427169 8.730000e-07 65.8
5 TraesCS2A01G346900 chr2D 93.702 2334 105 21 1447 3767 441571848 441574152 0.000000e+00 3458.0
6 TraesCS2A01G346900 chr2D 92.890 436 16 5 935 1370 441571431 441571851 1.490000e-173 619.0
7 TraesCS2A01G346900 chr2D 79.027 329 53 12 443 761 342107459 342107137 1.060000e-50 211.0
8 TraesCS2A01G346900 chr2D 95.745 47 1 1 92 137 333106000 333106046 1.450000e-09 75.0
9 TraesCS2A01G346900 chr7B 83.481 339 46 8 434 763 31560450 31560787 1.310000e-79 307.0
10 TraesCS2A01G346900 chr7B 90.517 116 11 0 762 877 108491156 108491041 1.810000e-33 154.0
11 TraesCS2A01G346900 chr7B 90.351 114 10 1 764 877 59672403 59672291 8.430000e-32 148.0
12 TraesCS2A01G346900 chr7B 91.954 87 7 0 144 230 458527882 458527968 5.110000e-24 122.0
13 TraesCS2A01G346900 chr7D 79.661 354 43 22 434 763 534439945 534439597 1.050000e-55 228.0
14 TraesCS2A01G346900 chr7D 91.736 121 10 0 757 877 525715338 525715218 6.470000e-38 169.0
15 TraesCS2A01G346900 chr7D 89.744 117 12 0 761 877 20222264 20222380 2.340000e-32 150.0
16 TraesCS2A01G346900 chr7D 94.505 91 5 0 142 232 470204789 470204879 1.410000e-29 141.0
17 TraesCS2A01G346900 chr7D 88.136 59 4 2 91 146 465477779 465477837 2.430000e-07 67.6
18 TraesCS2A01G346900 chr1B 90.083 121 11 1 758 877 433435323 433435203 5.040000e-34 156.0
19 TraesCS2A01G346900 chr1B 84.466 103 16 0 236 338 6395433 6395331 6.660000e-18 102.0
20 TraesCS2A01G346900 chr5D 91.071 112 10 0 763 874 313837742 313837853 6.520000e-33 152.0
21 TraesCS2A01G346900 chr4D 89.831 118 9 2 760 877 92656866 92656752 8.430000e-32 148.0
22 TraesCS2A01G346900 chr4D 92.045 88 7 0 144 231 23320533 23320446 1.420000e-24 124.0
23 TraesCS2A01G346900 chr4D 90.566 53 3 2 95 146 307245611 307245560 6.750000e-08 69.4
24 TraesCS2A01G346900 chr1D 87.903 124 15 0 754 877 295277328 295277451 3.030000e-31 147.0
25 TraesCS2A01G346900 chr1D 82.292 96 16 1 244 338 242560363 242560268 8.670000e-12 82.4
26 TraesCS2A01G346900 chr7A 95.294 85 4 0 142 226 254896031 254896115 6.560000e-28 135.0
27 TraesCS2A01G346900 chr7A 94.318 88 5 0 143 230 612375693 612375606 6.560000e-28 135.0
28 TraesCS2A01G346900 chr7A 88.235 102 12 0 137 238 692919280 692919179 5.110000e-24 122.0
29 TraesCS2A01G346900 chr7A 100.000 28 0 0 90 117 99678741 99678768 7.000000e-03 52.8
30 TraesCS2A01G346900 chr6A 91.000 100 8 1 130 229 134181153 134181055 2.360000e-27 134.0
31 TraesCS2A01G346900 chr6A 89.831 59 6 0 282 340 609593056 609593114 4.030000e-10 76.8
32 TraesCS2A01G346900 chr6B 93.258 89 6 0 142 230 705518235 705518147 8.490000e-27 132.0
33 TraesCS2A01G346900 chr6B 85.321 109 14 2 131 238 646750156 646750049 1.110000e-20 111.0
34 TraesCS2A01G346900 chr6B 95.556 45 1 1 95 138 457547100 457547144 1.880000e-08 71.3
35 TraesCS2A01G346900 chr5A 89.320 103 9 2 144 246 526875316 526875416 1.100000e-25 128.0
36 TraesCS2A01G346900 chr5A 79.464 112 21 2 228 338 290396678 290396788 1.120000e-10 78.7
37 TraesCS2A01G346900 chr5A 92.157 51 4 0 227 277 52003691 52003741 5.220000e-09 73.1
38 TraesCS2A01G346900 chr6D 89.474 95 10 0 142 236 340947313 340947219 1.840000e-23 121.0
39 TraesCS2A01G346900 chr6D 83.036 112 19 0 227 338 355860508 355860397 6.660000e-18 102.0
40 TraesCS2A01G346900 chr6D 81.250 96 17 1 244 338 80065430 80065335 4.030000e-10 76.8
41 TraesCS2A01G346900 chr6D 97.297 37 1 0 88 124 189093502 189093466 3.140000e-06 63.9
42 TraesCS2A01G346900 chr5B 88.119 101 10 2 144 244 382888050 382888148 6.610000e-23 119.0
43 TraesCS2A01G346900 chr5B 90.805 87 8 0 144 230 532359923 532360009 2.380000e-22 117.0
44 TraesCS2A01G346900 chr3D 89.362 94 8 2 140 233 66523376 66523467 2.380000e-22 117.0
45 TraesCS2A01G346900 chr3D 90.566 53 3 2 95 146 147024007 147024058 6.750000e-08 69.4
46 TraesCS2A01G346900 chr1A 87.179 78 9 1 239 316 443660873 443660949 1.860000e-13 87.9
47 TraesCS2A01G346900 chr3B 94.340 53 2 1 95 146 143542539 143542487 3.120000e-11 80.5
48 TraesCS2A01G346900 chr3A 85.507 69 7 3 271 339 466579741 466579806 6.750000e-08 69.4
49 TraesCS2A01G346900 chr4B 91.489 47 2 2 98 142 668217734 668217688 3.140000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G346900 chr2A 585208553 585212319 3766 False 6957.0 6957 100.000 1 3767 1 chr2A.!!$F1 3766
1 TraesCS2A01G346900 chr2B 519181962 519184841 2879 False 4591.0 4591 95.401 878 3767 1 chr2B.!!$F2 2889
2 TraesCS2A01G346900 chr2D 441571431 441574152 2721 False 2038.5 3458 93.296 935 3767 2 chr2D.!!$F2 2832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 539 0.166597 CGCGCACACATCTTCACATT 59.833 50.0 8.75 0.00 0.00 2.71 F
550 551 0.373370 TTCACATTCTATGCGCACGC 59.627 50.0 14.90 8.33 42.35 5.34 F
2283 2284 0.177836 GTTTGGTGCAACAAGGCCTT 59.822 50.0 18.10 13.78 39.98 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 2023 0.749091 ATGATGTCCCCACATGCACG 60.749 55.000 0.0 0.0 43.79 5.34 R
2481 2482 3.257469 TGCCTTAGAATCTGCTGTGAG 57.743 47.619 0.0 0.0 0.00 3.51 R
3183 3187 1.063567 TGGGTTTGTACCAGTGCCTTT 60.064 47.619 0.0 0.0 46.96 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.952347 AGAAGGTAGGGCTGAATTTAAAAGG 59.048 40.000 0.00 0.00 0.00 3.11
25 26 4.610333 AGGTAGGGCTGAATTTAAAAGGG 58.390 43.478 0.00 0.00 0.00 3.95
26 27 4.293901 AGGTAGGGCTGAATTTAAAAGGGA 59.706 41.667 0.00 0.00 0.00 4.20
27 28 5.020795 GGTAGGGCTGAATTTAAAAGGGAA 58.979 41.667 0.00 0.00 0.00 3.97
28 29 5.482526 GGTAGGGCTGAATTTAAAAGGGAAA 59.517 40.000 0.00 0.00 0.00 3.13
29 30 5.483685 AGGGCTGAATTTAAAAGGGAAAC 57.516 39.130 0.00 0.00 0.00 2.78
30 31 5.155161 AGGGCTGAATTTAAAAGGGAAACT 58.845 37.500 0.00 0.00 0.00 2.66
31 32 5.606749 AGGGCTGAATTTAAAAGGGAAACTT 59.393 36.000 0.00 0.00 42.52 2.66
32 33 6.785466 AGGGCTGAATTTAAAAGGGAAACTTA 59.215 34.615 0.00 0.00 38.85 2.24
33 34 6.872020 GGGCTGAATTTAAAAGGGAAACTTAC 59.128 38.462 0.00 0.00 38.85 2.34
34 35 6.584942 GGCTGAATTTAAAAGGGAAACTTACG 59.415 38.462 0.00 0.00 38.85 3.18
35 36 6.584942 GCTGAATTTAAAAGGGAAACTTACGG 59.415 38.462 0.00 0.00 38.85 4.02
36 37 7.522562 GCTGAATTTAAAAGGGAAACTTACGGA 60.523 37.037 0.00 0.00 38.85 4.69
37 38 8.235359 TGAATTTAAAAGGGAAACTTACGGAA 57.765 30.769 0.00 0.00 38.85 4.30
38 39 8.693625 TGAATTTAAAAGGGAAACTTACGGAAA 58.306 29.630 0.00 0.00 38.85 3.13
39 40 8.876275 AATTTAAAAGGGAAACTTACGGAAAC 57.124 30.769 0.00 0.00 38.85 2.78
41 42 2.497138 AAGGGAAACTTACGGAAACGG 58.503 47.619 0.00 0.00 45.78 4.44
55 56 4.577834 GGAAACGGAATGGAGAAACAAA 57.422 40.909 0.00 0.00 0.00 2.83
56 57 4.295870 GGAAACGGAATGGAGAAACAAAC 58.704 43.478 0.00 0.00 0.00 2.93
57 58 4.037565 GGAAACGGAATGGAGAAACAAACT 59.962 41.667 0.00 0.00 0.00 2.66
58 59 4.830826 AACGGAATGGAGAAACAAACTC 57.169 40.909 0.00 0.00 0.00 3.01
59 60 3.815809 ACGGAATGGAGAAACAAACTCA 58.184 40.909 0.00 0.00 36.26 3.41
60 61 4.204012 ACGGAATGGAGAAACAAACTCAA 58.796 39.130 0.00 0.00 36.26 3.02
61 62 4.036380 ACGGAATGGAGAAACAAACTCAAC 59.964 41.667 0.00 0.00 36.26 3.18
62 63 4.036262 CGGAATGGAGAAACAAACTCAACA 59.964 41.667 0.00 0.00 36.26 3.33
63 64 5.523369 GGAATGGAGAAACAAACTCAACAG 58.477 41.667 0.00 0.00 36.26 3.16
64 65 5.067805 GGAATGGAGAAACAAACTCAACAGT 59.932 40.000 0.00 0.00 36.26 3.55
65 66 6.405842 GGAATGGAGAAACAAACTCAACAGTT 60.406 38.462 0.00 0.00 45.43 3.16
66 67 5.560966 TGGAGAAACAAACTCAACAGTTC 57.439 39.130 0.00 0.00 42.45 3.01
67 68 5.007034 TGGAGAAACAAACTCAACAGTTCA 58.993 37.500 0.00 0.00 42.45 3.18
68 69 5.475220 TGGAGAAACAAACTCAACAGTTCAA 59.525 36.000 0.00 0.00 42.45 2.69
69 70 6.015856 TGGAGAAACAAACTCAACAGTTCAAA 60.016 34.615 0.00 0.00 42.45 2.69
70 71 7.035612 GGAGAAACAAACTCAACAGTTCAAAT 58.964 34.615 0.00 0.00 42.45 2.32
71 72 7.545615 GGAGAAACAAACTCAACAGTTCAAATT 59.454 33.333 0.00 0.00 42.45 1.82
72 73 8.243289 AGAAACAAACTCAACAGTTCAAATTG 57.757 30.769 0.00 0.00 42.45 2.32
73 74 8.087750 AGAAACAAACTCAACAGTTCAAATTGA 58.912 29.630 0.00 0.00 42.45 2.57
74 75 8.600449 AAACAAACTCAACAGTTCAAATTGAA 57.400 26.923 4.03 4.03 42.45 2.69
89 90 7.715266 TCAAATTGAACCCATGATATTCACA 57.285 32.000 0.00 0.00 32.21 3.58
90 91 8.131847 TCAAATTGAACCCATGATATTCACAA 57.868 30.769 0.00 0.00 32.21 3.33
91 92 8.760735 TCAAATTGAACCCATGATATTCACAAT 58.239 29.630 0.00 0.00 32.21 2.71
94 95 9.425248 AATTGAACCCATGATATTCACAATAGT 57.575 29.630 0.00 0.00 32.21 2.12
96 97 8.902540 TGAACCCATGATATTCACAATAGTAC 57.097 34.615 0.00 0.00 0.00 2.73
97 98 8.713971 TGAACCCATGATATTCACAATAGTACT 58.286 33.333 0.00 0.00 0.00 2.73
98 99 9.209175 GAACCCATGATATTCACAATAGTACTC 57.791 37.037 0.00 0.00 0.00 2.59
99 100 7.680730 ACCCATGATATTCACAATAGTACTCC 58.319 38.462 0.00 0.00 0.00 3.85
100 101 7.514127 ACCCATGATATTCACAATAGTACTCCT 59.486 37.037 0.00 0.00 0.00 3.69
101 102 8.378565 CCCATGATATTCACAATAGTACTCCTT 58.621 37.037 0.00 0.00 0.00 3.36
102 103 9.429359 CCATGATATTCACAATAGTACTCCTTC 57.571 37.037 0.00 0.00 0.00 3.46
103 104 9.429359 CATGATATTCACAATAGTACTCCTTCC 57.571 37.037 0.00 0.00 0.00 3.46
104 105 7.658261 TGATATTCACAATAGTACTCCTTCCG 58.342 38.462 0.00 0.00 0.00 4.30
105 106 5.934402 ATTCACAATAGTACTCCTTCCGT 57.066 39.130 0.00 0.00 0.00 4.69
106 107 5.733620 TTCACAATAGTACTCCTTCCGTT 57.266 39.130 0.00 0.00 0.00 4.44
107 108 5.320549 TCACAATAGTACTCCTTCCGTTC 57.679 43.478 0.00 0.00 0.00 3.95
108 109 4.159135 TCACAATAGTACTCCTTCCGTTCC 59.841 45.833 0.00 0.00 0.00 3.62
109 110 4.159879 CACAATAGTACTCCTTCCGTTCCT 59.840 45.833 0.00 0.00 0.00 3.36
110 111 5.359009 CACAATAGTACTCCTTCCGTTCCTA 59.641 44.000 0.00 0.00 0.00 2.94
111 112 5.954150 ACAATAGTACTCCTTCCGTTCCTAA 59.046 40.000 0.00 0.00 0.00 2.69
112 113 6.438425 ACAATAGTACTCCTTCCGTTCCTAAA 59.562 38.462 0.00 0.00 0.00 1.85
113 114 7.125356 ACAATAGTACTCCTTCCGTTCCTAAAT 59.875 37.037 0.00 0.00 0.00 1.40
114 115 8.636213 CAATAGTACTCCTTCCGTTCCTAAATA 58.364 37.037 0.00 0.00 0.00 1.40
115 116 8.953223 ATAGTACTCCTTCCGTTCCTAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
117 118 8.953223 AGTACTCCTTCCGTTCCTAAATATAT 57.047 34.615 0.00 0.00 0.00 0.86
118 119 8.804204 AGTACTCCTTCCGTTCCTAAATATATG 58.196 37.037 0.00 0.00 0.00 1.78
119 120 7.613551 ACTCCTTCCGTTCCTAAATATATGT 57.386 36.000 0.00 0.00 0.00 2.29
120 121 7.668492 ACTCCTTCCGTTCCTAAATATATGTC 58.332 38.462 0.00 0.00 0.00 3.06
121 122 7.509659 ACTCCTTCCGTTCCTAAATATATGTCT 59.490 37.037 0.00 0.00 0.00 3.41
122 123 8.258850 TCCTTCCGTTCCTAAATATATGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
123 124 8.711170 TCCTTCCGTTCCTAAATATATGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
124 125 9.338622 CCTTCCGTTCCTAAATATATGTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
153 154 6.896021 TTTCAATATAGACTACTCCCTCCG 57.104 41.667 0.00 0.00 0.00 4.63
154 155 5.579753 TCAATATAGACTACTCCCTCCGT 57.420 43.478 0.00 0.00 0.00 4.69
155 156 6.692849 TCAATATAGACTACTCCCTCCGTA 57.307 41.667 0.00 0.00 0.00 4.02
156 157 7.083062 TCAATATAGACTACTCCCTCCGTAA 57.917 40.000 0.00 0.00 0.00 3.18
157 158 7.520798 TCAATATAGACTACTCCCTCCGTAAA 58.479 38.462 0.00 0.00 0.00 2.01
158 159 7.664731 TCAATATAGACTACTCCCTCCGTAAAG 59.335 40.741 0.00 0.00 0.00 1.85
159 160 5.643421 ATAGACTACTCCCTCCGTAAAGA 57.357 43.478 0.00 0.00 0.00 2.52
160 161 4.313020 AGACTACTCCCTCCGTAAAGAA 57.687 45.455 0.00 0.00 0.00 2.52
161 162 4.670765 AGACTACTCCCTCCGTAAAGAAA 58.329 43.478 0.00 0.00 0.00 2.52
162 163 5.270794 AGACTACTCCCTCCGTAAAGAAAT 58.729 41.667 0.00 0.00 0.00 2.17
163 164 6.430007 AGACTACTCCCTCCGTAAAGAAATA 58.570 40.000 0.00 0.00 0.00 1.40
164 165 7.068061 AGACTACTCCCTCCGTAAAGAAATAT 58.932 38.462 0.00 0.00 0.00 1.28
165 166 8.223330 AGACTACTCCCTCCGTAAAGAAATATA 58.777 37.037 0.00 0.00 0.00 0.86
166 167 8.773033 ACTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
167 168 8.858094 ACTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
168 169 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
169 170 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
170 171 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
171 172 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
172 173 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
173 174 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
174 175 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
233 234 8.964476 ATTTGTTTACAGAGGGAGTACATATG 57.036 34.615 0.00 0.00 0.00 1.78
234 235 7.727578 TTGTTTACAGAGGGAGTACATATGA 57.272 36.000 10.38 0.00 0.00 2.15
235 236 7.727578 TGTTTACAGAGGGAGTACATATGAA 57.272 36.000 10.38 0.00 0.00 2.57
236 237 8.319057 TGTTTACAGAGGGAGTACATATGAAT 57.681 34.615 10.38 0.00 0.00 2.57
237 238 8.204160 TGTTTACAGAGGGAGTACATATGAATG 58.796 37.037 10.38 0.00 39.17 2.67
239 240 9.429109 TTTACAGAGGGAGTACATATGAATGTA 57.571 33.333 10.38 0.00 44.66 2.29
267 268 9.701098 AAAGACGTATTTTAGTGTGTAGATTCA 57.299 29.630 1.52 0.00 0.00 2.57
268 269 8.684973 AGACGTATTTTAGTGTGTAGATTCAC 57.315 34.615 0.00 0.00 38.63 3.18
269 270 8.521176 AGACGTATTTTAGTGTGTAGATTCACT 58.479 33.333 0.00 0.00 45.21 3.41
270 271 9.136952 GACGTATTTTAGTGTGTAGATTCACTT 57.863 33.333 3.25 0.00 43.39 3.16
280 281 9.950680 AGTGTGTAGATTCACTTATTTTGTTTG 57.049 29.630 0.00 0.00 41.33 2.93
281 282 9.180678 GTGTGTAGATTCACTTATTTTGTTTGG 57.819 33.333 0.00 0.00 38.90 3.28
282 283 8.908903 TGTGTAGATTCACTTATTTTGTTTGGT 58.091 29.630 0.00 0.00 38.90 3.67
290 291 9.522804 TTCACTTATTTTGTTTGGTATGTTGTC 57.477 29.630 0.00 0.00 0.00 3.18
291 292 8.908903 TCACTTATTTTGTTTGGTATGTTGTCT 58.091 29.630 0.00 0.00 0.00 3.41
324 325 9.665264 AAATCTCTAAAAAGACTTGCGTTTAAG 57.335 29.630 0.00 0.00 0.00 1.85
325 326 8.603242 ATCTCTAAAAAGACTTGCGTTTAAGA 57.397 30.769 0.00 0.00 0.00 2.10
326 327 8.428186 TCTCTAAAAAGACTTGCGTTTAAGAA 57.572 30.769 0.00 0.00 0.00 2.52
327 328 8.333186 TCTCTAAAAAGACTTGCGTTTAAGAAC 58.667 33.333 0.00 0.00 0.00 3.01
338 339 2.977914 GTTTAAGAACGGAGGGGGTAC 58.022 52.381 0.00 0.00 0.00 3.34
339 340 2.568956 GTTTAAGAACGGAGGGGGTACT 59.431 50.000 0.00 0.00 0.00 2.73
340 341 3.756082 TTAAGAACGGAGGGGGTACTA 57.244 47.619 0.00 0.00 0.00 1.82
341 342 1.857965 AAGAACGGAGGGGGTACTAC 58.142 55.000 0.00 0.00 0.00 2.73
342 343 1.006020 AGAACGGAGGGGGTACTACT 58.994 55.000 0.00 0.00 0.00 2.57
343 344 1.109609 GAACGGAGGGGGTACTACTG 58.890 60.000 0.00 0.00 0.00 2.74
344 345 0.411058 AACGGAGGGGGTACTACTGT 59.589 55.000 0.00 0.00 0.00 3.55
345 346 1.298953 ACGGAGGGGGTACTACTGTA 58.701 55.000 0.00 0.00 0.00 2.74
346 347 1.640670 ACGGAGGGGGTACTACTGTAA 59.359 52.381 0.00 0.00 0.00 2.41
347 348 2.245806 ACGGAGGGGGTACTACTGTAAT 59.754 50.000 0.00 0.00 0.00 1.89
348 349 3.303049 CGGAGGGGGTACTACTGTAATT 58.697 50.000 0.00 0.00 0.00 1.40
349 350 3.708121 CGGAGGGGGTACTACTGTAATTT 59.292 47.826 0.00 0.00 0.00 1.82
350 351 4.162888 CGGAGGGGGTACTACTGTAATTTT 59.837 45.833 0.00 0.00 0.00 1.82
351 352 5.363580 CGGAGGGGGTACTACTGTAATTTTA 59.636 44.000 0.00 0.00 0.00 1.52
352 353 6.042437 CGGAGGGGGTACTACTGTAATTTTAT 59.958 42.308 0.00 0.00 0.00 1.40
353 354 7.222161 GGAGGGGGTACTACTGTAATTTTATG 58.778 42.308 0.00 0.00 0.00 1.90
354 355 7.071572 GGAGGGGGTACTACTGTAATTTTATGA 59.928 40.741 0.00 0.00 0.00 2.15
355 356 8.030913 AGGGGGTACTACTGTAATTTTATGAG 57.969 38.462 0.00 0.00 0.00 2.90
356 357 7.847848 AGGGGGTACTACTGTAATTTTATGAGA 59.152 37.037 0.00 0.00 0.00 3.27
357 358 8.488668 GGGGGTACTACTGTAATTTTATGAGAA 58.511 37.037 0.00 0.00 0.00 2.87
358 359 9.895138 GGGGTACTACTGTAATTTTATGAGAAA 57.105 33.333 0.00 0.00 0.00 2.52
378 379 9.554724 TGAGAAATATTTCGATTACAAAAGTGC 57.445 29.630 19.86 0.00 41.92 4.40
379 380 9.554724 GAGAAATATTTCGATTACAAAAGTGCA 57.445 29.630 19.86 0.00 41.92 4.57
380 381 9.906660 AGAAATATTTCGATTACAAAAGTGCAA 57.093 25.926 19.86 0.00 41.92 4.08
383 384 9.906660 AATATTTCGATTACAAAAGTGCAAAGA 57.093 25.926 0.00 0.00 0.00 2.52
385 386 7.851822 TTTCGATTACAAAAGTGCAAAGATC 57.148 32.000 0.00 0.00 0.00 2.75
386 387 6.801539 TCGATTACAAAAGTGCAAAGATCT 57.198 33.333 0.00 0.00 0.00 2.75
387 388 7.899178 TCGATTACAAAAGTGCAAAGATCTA 57.101 32.000 0.00 0.00 0.00 1.98
388 389 8.317891 TCGATTACAAAAGTGCAAAGATCTAA 57.682 30.769 0.00 0.00 0.00 2.10
389 390 8.779303 TCGATTACAAAAGTGCAAAGATCTAAA 58.221 29.630 0.00 0.00 0.00 1.85
390 391 9.393249 CGATTACAAAAGTGCAAAGATCTAAAA 57.607 29.630 0.00 0.00 0.00 1.52
421 422 9.685005 GTATTCCGACACGATATAAATAAATGC 57.315 33.333 0.00 0.00 0.00 3.56
422 423 7.716768 TTCCGACACGATATAAATAAATGCA 57.283 32.000 0.00 0.00 0.00 3.96
423 424 7.899178 TCCGACACGATATAAATAAATGCAT 57.101 32.000 0.00 0.00 0.00 3.96
424 425 8.317891 TCCGACACGATATAAATAAATGCATT 57.682 30.769 5.99 5.99 0.00 3.56
425 426 8.779303 TCCGACACGATATAAATAAATGCATTT 58.221 29.630 26.72 26.72 32.91 2.32
426 427 9.051027 CCGACACGATATAAATAAATGCATTTC 57.949 33.333 27.28 10.35 30.84 2.17
427 428 8.766753 CGACACGATATAAATAAATGCATTTCG 58.233 33.333 27.28 22.52 30.84 3.46
428 429 9.805966 GACACGATATAAATAAATGCATTTCGA 57.194 29.630 27.28 12.37 30.84 3.71
435 436 6.869421 AAATAAATGCATTTCGAAACGGAG 57.131 33.333 27.28 5.01 0.00 4.63
436 437 5.811399 ATAAATGCATTTCGAAACGGAGA 57.189 34.783 27.28 7.15 0.00 3.71
437 438 4.497473 AAATGCATTTCGAAACGGAGAA 57.503 36.364 18.99 0.00 0.00 2.87
438 439 3.747099 ATGCATTTCGAAACGGAGAAG 57.253 42.857 13.81 0.00 0.00 2.85
439 440 2.489971 TGCATTTCGAAACGGAGAAGT 58.510 42.857 13.81 0.00 0.00 3.01
440 441 2.223144 TGCATTTCGAAACGGAGAAGTG 59.777 45.455 13.81 6.12 37.22 3.16
441 442 2.839474 CATTTCGAAACGGAGAAGTGC 58.161 47.619 13.81 0.00 29.79 4.40
442 443 1.942677 TTTCGAAACGGAGAAGTGCA 58.057 45.000 6.47 0.00 0.00 4.57
443 444 2.163818 TTCGAAACGGAGAAGTGCAT 57.836 45.000 0.00 0.00 0.00 3.96
444 445 1.428448 TCGAAACGGAGAAGTGCATG 58.572 50.000 0.00 0.00 0.00 4.06
445 446 0.443869 CGAAACGGAGAAGTGCATGG 59.556 55.000 0.00 0.00 0.00 3.66
446 447 1.808411 GAAACGGAGAAGTGCATGGA 58.192 50.000 0.00 0.00 0.00 3.41
447 448 2.359900 GAAACGGAGAAGTGCATGGAT 58.640 47.619 0.00 0.00 0.00 3.41
448 449 1.742761 AACGGAGAAGTGCATGGATG 58.257 50.000 0.00 0.00 0.00 3.51
449 450 0.904649 ACGGAGAAGTGCATGGATGA 59.095 50.000 0.00 0.00 0.00 2.92
450 451 1.278985 ACGGAGAAGTGCATGGATGAA 59.721 47.619 0.00 0.00 0.00 2.57
451 452 2.092753 ACGGAGAAGTGCATGGATGAAT 60.093 45.455 0.00 0.00 0.00 2.57
452 453 2.547211 CGGAGAAGTGCATGGATGAATC 59.453 50.000 0.00 0.00 0.00 2.52
465 466 4.038271 GGATGAATCCAAGGGCATATGA 57.962 45.455 6.97 0.00 46.38 2.15
466 467 4.410099 GGATGAATCCAAGGGCATATGAA 58.590 43.478 6.97 0.00 46.38 2.57
467 468 4.219288 GGATGAATCCAAGGGCATATGAAC 59.781 45.833 6.97 0.00 46.38 3.18
468 469 3.565307 TGAATCCAAGGGCATATGAACC 58.435 45.455 6.97 7.84 0.00 3.62
476 477 2.733956 GGGCATATGAACCCACTTTGA 58.266 47.619 6.97 0.00 46.22 2.69
477 478 3.096092 GGGCATATGAACCCACTTTGAA 58.904 45.455 6.97 0.00 46.22 2.69
478 479 3.513515 GGGCATATGAACCCACTTTGAAA 59.486 43.478 6.97 0.00 46.22 2.69
479 480 4.020662 GGGCATATGAACCCACTTTGAAAA 60.021 41.667 6.97 0.00 46.22 2.29
480 481 5.512232 GGGCATATGAACCCACTTTGAAAAA 60.512 40.000 6.97 0.00 46.22 1.94
481 482 5.408299 GGCATATGAACCCACTTTGAAAAAC 59.592 40.000 6.97 0.00 0.00 2.43
482 483 6.223120 GCATATGAACCCACTTTGAAAAACT 58.777 36.000 6.97 0.00 0.00 2.66
483 484 6.705825 GCATATGAACCCACTTTGAAAAACTT 59.294 34.615 6.97 0.00 0.00 2.66
484 485 7.870445 GCATATGAACCCACTTTGAAAAACTTA 59.130 33.333 6.97 0.00 0.00 2.24
485 486 9.927668 CATATGAACCCACTTTGAAAAACTTAT 57.072 29.630 0.00 0.00 0.00 1.73
487 488 8.887036 ATGAACCCACTTTGAAAAACTTATTC 57.113 30.769 0.00 0.00 0.00 1.75
488 489 7.269316 TGAACCCACTTTGAAAAACTTATTCC 58.731 34.615 0.00 0.00 0.00 3.01
489 490 7.125053 TGAACCCACTTTGAAAAACTTATTCCT 59.875 33.333 0.00 0.00 0.00 3.36
490 491 8.541899 AACCCACTTTGAAAAACTTATTCCTA 57.458 30.769 0.00 0.00 0.00 2.94
491 492 8.541899 ACCCACTTTGAAAAACTTATTCCTAA 57.458 30.769 0.00 0.00 0.00 2.69
492 493 8.983789 ACCCACTTTGAAAAACTTATTCCTAAA 58.016 29.630 0.00 0.00 0.00 1.85
493 494 9.996554 CCCACTTTGAAAAACTTATTCCTAAAT 57.003 29.630 0.00 0.00 0.00 1.40
528 529 2.389386 AAAAAGTCTCGCGCACACA 58.611 47.368 8.75 0.00 0.00 3.72
529 530 0.944386 AAAAAGTCTCGCGCACACAT 59.056 45.000 8.75 0.00 0.00 3.21
530 531 0.512952 AAAAGTCTCGCGCACACATC 59.487 50.000 8.75 0.00 0.00 3.06
531 532 0.319900 AAAGTCTCGCGCACACATCT 60.320 50.000 8.75 0.00 0.00 2.90
532 533 0.319900 AAGTCTCGCGCACACATCTT 60.320 50.000 8.75 0.86 0.00 2.40
533 534 0.734253 AGTCTCGCGCACACATCTTC 60.734 55.000 8.75 0.00 0.00 2.87
534 535 1.008875 GTCTCGCGCACACATCTTCA 61.009 55.000 8.75 0.00 0.00 3.02
535 536 1.008875 TCTCGCGCACACATCTTCAC 61.009 55.000 8.75 0.00 0.00 3.18
536 537 1.284297 CTCGCGCACACATCTTCACA 61.284 55.000 8.75 0.00 0.00 3.58
537 538 0.670239 TCGCGCACACATCTTCACAT 60.670 50.000 8.75 0.00 0.00 3.21
538 539 0.166597 CGCGCACACATCTTCACATT 59.833 50.000 8.75 0.00 0.00 2.71
539 540 1.787989 CGCGCACACATCTTCACATTC 60.788 52.381 8.75 0.00 0.00 2.67
540 541 1.466167 GCGCACACATCTTCACATTCT 59.534 47.619 0.30 0.00 0.00 2.40
541 542 2.672874 GCGCACACATCTTCACATTCTA 59.327 45.455 0.30 0.00 0.00 2.10
542 543 3.310774 GCGCACACATCTTCACATTCTAT 59.689 43.478 0.30 0.00 0.00 1.98
543 544 4.784394 GCGCACACATCTTCACATTCTATG 60.784 45.833 0.30 0.00 0.00 2.23
544 545 4.595116 GCACACATCTTCACATTCTATGC 58.405 43.478 0.00 0.00 0.00 3.14
545 546 4.784394 GCACACATCTTCACATTCTATGCG 60.784 45.833 0.00 0.00 0.00 4.73
546 547 3.310774 ACACATCTTCACATTCTATGCGC 59.689 43.478 0.00 0.00 0.00 6.09
547 548 3.310501 CACATCTTCACATTCTATGCGCA 59.689 43.478 14.96 14.96 0.00 6.09
548 549 3.310774 ACATCTTCACATTCTATGCGCAC 59.689 43.478 14.90 0.00 0.00 5.34
549 550 1.926510 TCTTCACATTCTATGCGCACG 59.073 47.619 14.90 7.32 0.00 5.34
550 551 0.373370 TTCACATTCTATGCGCACGC 59.627 50.000 14.90 8.33 42.35 5.34
561 562 2.283254 GCGCACGCAAAAAGTTTCA 58.717 47.368 10.65 0.00 41.49 2.69
562 563 0.852136 GCGCACGCAAAAAGTTTCAT 59.148 45.000 10.65 0.00 41.49 2.57
563 564 1.395820 GCGCACGCAAAAAGTTTCATG 60.396 47.619 10.65 0.00 41.49 3.07
564 565 1.189884 CGCACGCAAAAAGTTTCATGG 59.810 47.619 0.00 0.00 0.00 3.66
565 566 2.468831 GCACGCAAAAAGTTTCATGGA 58.531 42.857 0.00 0.00 0.00 3.41
566 567 2.863137 GCACGCAAAAAGTTTCATGGAA 59.137 40.909 0.00 0.00 0.00 3.53
567 568 3.308323 GCACGCAAAAAGTTTCATGGAAA 59.692 39.130 0.00 0.00 0.00 3.13
568 569 4.201763 GCACGCAAAAAGTTTCATGGAAAA 60.202 37.500 0.00 0.00 33.14 2.29
569 570 5.672321 GCACGCAAAAAGTTTCATGGAAAAA 60.672 36.000 0.00 0.00 33.14 1.94
570 571 5.732185 CACGCAAAAAGTTTCATGGAAAAAC 59.268 36.000 0.00 0.00 33.14 2.43
571 572 5.409826 ACGCAAAAAGTTTCATGGAAAAACA 59.590 32.000 10.18 0.00 38.73 2.83
572 573 6.073003 ACGCAAAAAGTTTCATGGAAAAACAA 60.073 30.769 10.18 0.00 38.73 2.83
573 574 6.798959 CGCAAAAAGTTTCATGGAAAAACAAA 59.201 30.769 10.18 0.00 38.73 2.83
574 575 7.484324 CGCAAAAAGTTTCATGGAAAAACAAAT 59.516 29.630 10.18 0.00 38.73 2.32
575 576 9.138062 GCAAAAAGTTTCATGGAAAAACAAATT 57.862 25.926 10.18 1.76 38.73 1.82
591 592 8.672214 AAAACAAATTTTTCTTTGACATGTGC 57.328 26.923 1.15 0.00 38.17 4.57
592 593 6.981762 ACAAATTTTTCTTTGACATGTGCA 57.018 29.167 1.15 0.00 38.17 4.57
593 594 7.375106 ACAAATTTTTCTTTGACATGTGCAA 57.625 28.000 1.15 4.80 38.17 4.08
594 595 7.814642 ACAAATTTTTCTTTGACATGTGCAAA 58.185 26.923 1.15 12.46 38.17 3.68
595 596 8.295288 ACAAATTTTTCTTTGACATGTGCAAAA 58.705 25.926 1.15 0.00 38.17 2.44
596 597 9.125906 CAAATTTTTCTTTGACATGTGCAAAAA 57.874 25.926 1.15 7.51 38.17 1.94
638 639 6.077838 GTGAAACGTTATTTAGAAGCACTGG 58.922 40.000 0.00 0.00 0.00 4.00
639 640 5.992829 TGAAACGTTATTTAGAAGCACTGGA 59.007 36.000 0.00 0.00 0.00 3.86
640 641 6.483974 TGAAACGTTATTTAGAAGCACTGGAA 59.516 34.615 0.00 0.00 0.00 3.53
641 642 7.174253 TGAAACGTTATTTAGAAGCACTGGAAT 59.826 33.333 0.00 0.00 0.00 3.01
642 643 7.448748 AACGTTATTTAGAAGCACTGGAATT 57.551 32.000 0.00 0.00 0.00 2.17
643 644 7.448748 ACGTTATTTAGAAGCACTGGAATTT 57.551 32.000 0.00 0.00 0.00 1.82
644 645 7.305474 ACGTTATTTAGAAGCACTGGAATTTG 58.695 34.615 0.00 0.00 0.00 2.32
645 646 7.040686 ACGTTATTTAGAAGCACTGGAATTTGT 60.041 33.333 0.00 0.00 0.00 2.83
646 647 7.807907 CGTTATTTAGAAGCACTGGAATTTGTT 59.192 33.333 0.00 0.00 0.00 2.83
647 648 9.476202 GTTATTTAGAAGCACTGGAATTTGTTT 57.524 29.630 0.00 0.00 0.00 2.83
649 650 8.962884 ATTTAGAAGCACTGGAATTTGTTTTT 57.037 26.923 0.00 0.00 0.00 1.94
707 708 3.239861 TGCCACACACATATTGCGA 57.760 47.368 0.00 0.00 0.00 5.10
708 709 1.528129 TGCCACACACATATTGCGAA 58.472 45.000 0.00 0.00 0.00 4.70
709 710 1.468127 TGCCACACACATATTGCGAAG 59.532 47.619 0.00 0.00 0.00 3.79
710 711 1.737236 GCCACACACATATTGCGAAGA 59.263 47.619 0.00 0.00 0.00 2.87
711 712 2.355756 GCCACACACATATTGCGAAGAT 59.644 45.455 0.00 0.00 0.00 2.40
712 713 3.789791 GCCACACACATATTGCGAAGATG 60.790 47.826 0.00 0.00 36.23 2.90
713 714 3.374988 CCACACACATATTGCGAAGATGT 59.625 43.478 4.11 4.11 43.58 3.06
714 715 4.570369 CCACACACATATTGCGAAGATGTA 59.430 41.667 8.23 0.00 41.06 2.29
715 716 5.237127 CCACACACATATTGCGAAGATGTAT 59.763 40.000 8.23 0.00 41.06 2.29
716 717 6.131389 CACACACATATTGCGAAGATGTATG 58.869 40.000 11.02 11.02 41.79 2.39
717 718 5.142265 CACACATATTGCGAAGATGTATGC 58.858 41.667 8.23 0.00 41.06 3.14
718 719 4.084380 ACACATATTGCGAAGATGTATGCG 60.084 41.667 8.23 0.00 41.06 4.73
719 720 4.058124 ACATATTGCGAAGATGTATGCGT 58.942 39.130 7.17 0.00 41.19 5.24
720 721 4.084380 ACATATTGCGAAGATGTATGCGTG 60.084 41.667 7.17 0.00 41.19 5.34
721 722 2.003196 TTGCGAAGATGTATGCGTGA 57.997 45.000 0.00 0.00 0.00 4.35
722 723 2.223537 TGCGAAGATGTATGCGTGAT 57.776 45.000 0.00 0.00 0.00 3.06
723 724 3.363341 TGCGAAGATGTATGCGTGATA 57.637 42.857 0.00 0.00 0.00 2.15
724 725 3.913089 TGCGAAGATGTATGCGTGATAT 58.087 40.909 0.00 0.00 0.00 1.63
725 726 4.306600 TGCGAAGATGTATGCGTGATATT 58.693 39.130 0.00 0.00 0.00 1.28
726 727 4.749598 TGCGAAGATGTATGCGTGATATTT 59.250 37.500 0.00 0.00 0.00 1.40
727 728 5.236263 TGCGAAGATGTATGCGTGATATTTT 59.764 36.000 0.00 0.00 0.00 1.82
728 729 6.136071 GCGAAGATGTATGCGTGATATTTTT 58.864 36.000 0.00 0.00 0.00 1.94
772 773 7.462571 AATGTGTTTAAAATGTACTCCCTCC 57.537 36.000 0.00 0.00 0.00 4.30
773 774 5.942961 TGTGTTTAAAATGTACTCCCTCCA 58.057 37.500 0.00 0.00 0.00 3.86
774 775 6.548321 TGTGTTTAAAATGTACTCCCTCCAT 58.452 36.000 0.00 0.00 0.00 3.41
775 776 6.657541 TGTGTTTAAAATGTACTCCCTCCATC 59.342 38.462 0.00 0.00 0.00 3.51
776 777 6.095021 GTGTTTAAAATGTACTCCCTCCATCC 59.905 42.308 0.00 0.00 0.00 3.51
777 778 6.184789 GTTTAAAATGTACTCCCTCCATCCA 58.815 40.000 0.00 0.00 0.00 3.41
778 779 4.946160 AAAATGTACTCCCTCCATCCAA 57.054 40.909 0.00 0.00 0.00 3.53
779 780 4.946160 AAATGTACTCCCTCCATCCAAA 57.054 40.909 0.00 0.00 0.00 3.28
780 781 4.946160 AATGTACTCCCTCCATCCAAAA 57.054 40.909 0.00 0.00 0.00 2.44
781 782 4.946160 ATGTACTCCCTCCATCCAAAAA 57.054 40.909 0.00 0.00 0.00 1.94
782 783 4.946160 TGTACTCCCTCCATCCAAAAAT 57.054 40.909 0.00 0.00 0.00 1.82
783 784 6.590656 ATGTACTCCCTCCATCCAAAAATA 57.409 37.500 0.00 0.00 0.00 1.40
784 785 5.751586 TGTACTCCCTCCATCCAAAAATAC 58.248 41.667 0.00 0.00 0.00 1.89
785 786 5.491078 TGTACTCCCTCCATCCAAAAATACT 59.509 40.000 0.00 0.00 0.00 2.12
786 787 5.536497 ACTCCCTCCATCCAAAAATACTT 57.464 39.130 0.00 0.00 0.00 2.24
787 788 5.264395 ACTCCCTCCATCCAAAAATACTTG 58.736 41.667 0.00 0.00 0.00 3.16
788 789 5.222337 ACTCCCTCCATCCAAAAATACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
789 790 5.650283 TCCCTCCATCCAAAAATACTTGTT 58.350 37.500 0.00 0.00 0.00 2.83
790 791 6.795590 TCCCTCCATCCAAAAATACTTGTTA 58.204 36.000 0.00 0.00 0.00 2.41
791 792 7.418378 TCCCTCCATCCAAAAATACTTGTTAT 58.582 34.615 0.00 0.00 0.00 1.89
792 793 7.559897 TCCCTCCATCCAAAAATACTTGTTATC 59.440 37.037 0.00 0.00 0.00 1.75
793 794 7.341769 CCCTCCATCCAAAAATACTTGTTATCA 59.658 37.037 0.00 0.00 0.00 2.15
794 795 8.748412 CCTCCATCCAAAAATACTTGTTATCAA 58.252 33.333 0.00 0.00 0.00 2.57
863 864 9.790344 ATACATCTCTTTCTATCCATTTTGAGG 57.210 33.333 0.00 0.00 0.00 3.86
864 865 7.865820 ACATCTCTTTCTATCCATTTTGAGGA 58.134 34.615 0.00 0.00 39.97 3.71
865 866 7.772757 ACATCTCTTTCTATCCATTTTGAGGAC 59.227 37.037 0.00 0.00 38.13 3.85
866 867 7.257790 TCTCTTTCTATCCATTTTGAGGACA 57.742 36.000 0.00 0.00 38.13 4.02
867 868 7.689299 TCTCTTTCTATCCATTTTGAGGACAA 58.311 34.615 0.00 0.00 38.13 3.18
868 869 8.163408 TCTCTTTCTATCCATTTTGAGGACAAA 58.837 33.333 0.00 0.00 43.10 2.83
869 870 8.884124 TCTTTCTATCCATTTTGAGGACAAAT 57.116 30.769 0.00 0.00 43.99 2.32
870 871 9.973661 TCTTTCTATCCATTTTGAGGACAAATA 57.026 29.630 0.00 0.00 43.99 1.40
875 876 9.971922 CTATCCATTTTGAGGACAAATATTTCC 57.028 33.333 0.00 0.00 43.99 3.13
876 877 6.862209 TCCATTTTGAGGACAAATATTTCCG 58.138 36.000 0.00 0.00 43.99 4.30
879 880 8.247562 CCATTTTGAGGACAAATATTTCCGTTA 58.752 33.333 0.00 0.00 43.99 3.18
907 908 5.680594 AAAATGGGTTCATATGCACATGT 57.319 34.783 4.61 0.00 32.44 3.21
909 910 3.084536 TGGGTTCATATGCACATGTGT 57.915 42.857 26.01 10.78 32.61 3.72
933 934 0.458025 GACGTGCCCTCTCTAAACGG 60.458 60.000 0.00 0.00 38.52 4.44
970 971 1.950472 CCGCGATCACAAAACTCAAC 58.050 50.000 8.23 0.00 0.00 3.18
974 975 1.539827 CGATCACAAAACTCAACCCCC 59.460 52.381 0.00 0.00 0.00 5.40
975 976 2.814097 CGATCACAAAACTCAACCCCCT 60.814 50.000 0.00 0.00 0.00 4.79
976 977 2.065899 TCACAAAACTCAACCCCCTG 57.934 50.000 0.00 0.00 0.00 4.45
977 978 1.566703 TCACAAAACTCAACCCCCTGA 59.433 47.619 0.00 0.00 0.00 3.86
978 979 2.024846 TCACAAAACTCAACCCCCTGAA 60.025 45.455 0.00 0.00 0.00 3.02
979 980 2.763448 CACAAAACTCAACCCCCTGAAA 59.237 45.455 0.00 0.00 0.00 2.69
980 981 3.387699 CACAAAACTCAACCCCCTGAAAT 59.612 43.478 0.00 0.00 0.00 2.17
981 982 3.641436 ACAAAACTCAACCCCCTGAAATC 59.359 43.478 0.00 0.00 0.00 2.17
982 983 3.897505 CAAAACTCAACCCCCTGAAATCT 59.102 43.478 0.00 0.00 0.00 2.40
983 984 3.441500 AACTCAACCCCCTGAAATCTC 57.558 47.619 0.00 0.00 0.00 2.75
990 991 0.755686 CCCCTGAAATCTCCCTCTCG 59.244 60.000 0.00 0.00 0.00 4.04
1006 1007 0.930742 CTCGTCTTCTCGTATGCCGC 60.931 60.000 0.00 0.00 36.19 6.53
1230 1231 1.219664 CCCGTTCAACGCCCTCATA 59.780 57.895 3.77 0.00 40.91 2.15
1536 1537 4.736896 GTCGTGTCCTGGACCGCC 62.737 72.222 23.42 12.77 0.00 6.13
1590 1591 2.507324 GAGGCTCTCGCGGTGTTC 60.507 66.667 6.13 0.00 36.88 3.18
1607 1608 2.126071 CGGCGAGATGGACGTTGT 60.126 61.111 0.00 0.00 32.57 3.32
1611 1612 2.100631 CGAGATGGACGTTGTGCCC 61.101 63.158 0.00 0.00 0.00 5.36
1712 1713 2.112190 GTGTCTTAAGAGGGAGAGGGG 58.888 57.143 5.12 0.00 0.00 4.79
1818 1819 2.027192 GCTCTTGGTGAGGGACATTGTA 60.027 50.000 0.00 0.00 42.87 2.41
1848 1849 3.374058 CGGTCATGATAAGTGGTTTGGTC 59.626 47.826 0.00 0.00 0.00 4.02
1990 1991 1.082019 TCTGGGAGGTGGGTGCATA 59.918 57.895 0.00 0.00 0.00 3.14
2022 2023 1.653151 GTAAAGGCATCGAGTGGGAC 58.347 55.000 0.00 0.00 0.00 4.46
2283 2284 0.177836 GTTTGGTGCAACAAGGCCTT 59.822 50.000 18.10 13.78 39.98 4.35
2481 2482 1.927895 CTCATGGGCGTGTAGAGTTC 58.072 55.000 0.00 0.00 0.00 3.01
2723 2724 4.633126 AGATATGGATGCGATATGTGCAAC 59.367 41.667 3.55 1.55 46.87 4.17
2790 2791 4.573900 TCTTCAGGCAGATTCTCAGTTTC 58.426 43.478 0.00 0.00 0.00 2.78
2868 2869 6.555360 CCTAGGGACTGGATATCAACTTTAGT 59.445 42.308 0.00 0.00 40.33 2.24
2869 2870 7.728981 CCTAGGGACTGGATATCAACTTTAGTA 59.271 40.741 0.00 0.00 40.33 1.82
2871 2872 8.568617 AGGGACTGGATATCAACTTTAGTAAT 57.431 34.615 4.83 0.00 37.18 1.89
2872 2873 9.670442 AGGGACTGGATATCAACTTTAGTAATA 57.330 33.333 4.83 0.00 37.18 0.98
2898 2900 3.379372 GCACATTGTTAGCATCATCTGGT 59.621 43.478 0.00 0.00 39.41 4.00
2930 2933 2.026915 TCTGTGGGTGAATGGTGATCAG 60.027 50.000 0.00 0.00 0.00 2.90
2947 2950 6.408548 GGTGATCAGATCTAACCTTGGAATGA 60.409 42.308 11.83 0.00 0.00 2.57
2993 2996 4.337836 TGTTTGTTGCTCTTGTGCTTATGA 59.662 37.500 0.00 0.00 0.00 2.15
3050 3053 3.901844 TGGAGTACAAAGTTAGCCAGACT 59.098 43.478 0.00 0.00 0.00 3.24
3068 3071 9.193806 AGCCAGACTTGATTAACAATGAATATT 57.806 29.630 0.00 0.00 37.88 1.28
3098 3101 1.668826 TGGGTGCCTCTTGGAGTATT 58.331 50.000 0.00 0.00 34.57 1.89
3099 3102 1.559682 TGGGTGCCTCTTGGAGTATTC 59.440 52.381 0.00 0.00 34.57 1.75
3104 3107 1.475930 GCCTCTTGGAGTATTCTGCCC 60.476 57.143 0.00 0.00 34.57 5.36
3163 3167 2.744494 GCATCAGAACTCCTGGATGGAC 60.744 54.545 0.00 0.00 43.12 4.02
3183 3187 3.170717 ACGAATGGACTCTGACCCTTAA 58.829 45.455 0.00 0.00 0.00 1.85
3194 3198 1.497286 TGACCCTTAAAAGGCACTGGT 59.503 47.619 3.03 0.00 45.10 4.00
3217 3221 7.587629 GGTACAAACCCAGACTAATTTGTAAC 58.412 38.462 14.79 14.13 44.68 2.50
3237 3241 4.628963 ACCGTTTTATACAAGGTGAGGT 57.371 40.909 0.00 0.00 33.37 3.85
3252 3256 4.953579 AGGTGAGGTAAAAAGTTGCTGAAA 59.046 37.500 0.00 0.00 0.00 2.69
3354 3364 4.022416 CAGCCTTGTAAACATGCCTGTTAA 60.022 41.667 7.84 0.00 44.83 2.01
3355 3365 4.022329 AGCCTTGTAAACATGCCTGTTAAC 60.022 41.667 7.84 0.00 44.83 2.01
3356 3366 4.022329 GCCTTGTAAACATGCCTGTTAACT 60.022 41.667 7.84 0.00 44.83 2.24
3359 3369 6.458232 TTGTAAACATGCCTGTTAACTGTT 57.542 33.333 7.84 5.81 44.83 3.16
3360 3370 7.255312 CCTTGTAAACATGCCTGTTAACTGTTA 60.255 37.037 7.84 0.00 44.83 2.41
3361 3371 7.753309 TGTAAACATGCCTGTTAACTGTTAT 57.247 32.000 7.84 0.67 44.83 1.89
3362 3372 8.172352 TGTAAACATGCCTGTTAACTGTTATT 57.828 30.769 7.84 0.00 44.83 1.40
3363 3373 8.293867 TGTAAACATGCCTGTTAACTGTTATTC 58.706 33.333 7.84 0.00 44.83 1.75
3364 3374 5.545658 ACATGCCTGTTAACTGTTATTCG 57.454 39.130 7.22 0.00 28.70 3.34
3365 3375 4.142687 ACATGCCTGTTAACTGTTATTCGC 60.143 41.667 7.22 4.91 28.70 4.70
3417 3428 6.223852 GTGAAGTGTTCTGAAGGAGTATGAA 58.776 40.000 0.00 0.00 0.00 2.57
3496 3507 5.335897 GGCATCTGCTTTTTAACATGACAGA 60.336 40.000 0.00 0.00 41.70 3.41
3567 3578 6.619801 AGATAAACTGTTGTTCAAGGTGAC 57.380 37.500 0.00 0.00 34.96 3.67
3602 3613 1.771854 TCACTCCAAAAGCACCCTGTA 59.228 47.619 0.00 0.00 0.00 2.74
3648 3659 6.521151 AAATTCATTCTGAAAGCACCCTAG 57.479 37.500 0.00 0.00 40.12 3.02
3650 3661 4.326826 TTCATTCTGAAAGCACCCTAGTG 58.673 43.478 0.00 0.00 39.12 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.952347 CCTTTTAAATTCAGCCCTACCTTCT 59.048 40.000 0.00 0.00 0.00 2.85
1 2 5.127194 CCCTTTTAAATTCAGCCCTACCTTC 59.873 44.000 0.00 0.00 0.00 3.46
2 3 5.023452 CCCTTTTAAATTCAGCCCTACCTT 58.977 41.667 0.00 0.00 0.00 3.50
3 4 4.293901 TCCCTTTTAAATTCAGCCCTACCT 59.706 41.667 0.00 0.00 0.00 3.08
4 5 4.606210 TCCCTTTTAAATTCAGCCCTACC 58.394 43.478 0.00 0.00 0.00 3.18
5 6 6.210784 AGTTTCCCTTTTAAATTCAGCCCTAC 59.789 38.462 0.00 0.00 0.00 3.18
6 7 6.319715 AGTTTCCCTTTTAAATTCAGCCCTA 58.680 36.000 0.00 0.00 0.00 3.53
7 8 5.155161 AGTTTCCCTTTTAAATTCAGCCCT 58.845 37.500 0.00 0.00 0.00 5.19
8 9 5.483685 AGTTTCCCTTTTAAATTCAGCCC 57.516 39.130 0.00 0.00 0.00 5.19
9 10 6.584942 CGTAAGTTTCCCTTTTAAATTCAGCC 59.415 38.462 0.00 0.00 34.46 4.85
10 11 6.584942 CCGTAAGTTTCCCTTTTAAATTCAGC 59.415 38.462 0.00 0.00 34.46 4.26
11 12 7.878036 TCCGTAAGTTTCCCTTTTAAATTCAG 58.122 34.615 0.00 0.00 34.46 3.02
12 13 7.820578 TCCGTAAGTTTCCCTTTTAAATTCA 57.179 32.000 0.00 0.00 34.46 2.57
13 14 8.971321 GTTTCCGTAAGTTTCCCTTTTAAATTC 58.029 33.333 0.00 0.00 34.46 2.17
14 15 7.648908 CGTTTCCGTAAGTTTCCCTTTTAAATT 59.351 33.333 0.00 0.00 34.46 1.82
15 16 7.140705 CGTTTCCGTAAGTTTCCCTTTTAAAT 58.859 34.615 0.00 0.00 34.46 1.40
16 17 6.459435 CCGTTTCCGTAAGTTTCCCTTTTAAA 60.459 38.462 0.00 0.00 34.46 1.52
17 18 5.008514 CCGTTTCCGTAAGTTTCCCTTTTAA 59.991 40.000 0.00 0.00 34.46 1.52
18 19 4.514816 CCGTTTCCGTAAGTTTCCCTTTTA 59.485 41.667 0.00 0.00 34.46 1.52
19 20 3.316029 CCGTTTCCGTAAGTTTCCCTTTT 59.684 43.478 0.00 0.00 34.46 2.27
20 21 2.880268 CCGTTTCCGTAAGTTTCCCTTT 59.120 45.455 0.00 0.00 34.46 3.11
21 22 2.104622 TCCGTTTCCGTAAGTTTCCCTT 59.895 45.455 0.00 0.00 37.17 3.95
22 23 1.693606 TCCGTTTCCGTAAGTTTCCCT 59.306 47.619 0.00 0.00 0.00 4.20
23 24 2.168326 TCCGTTTCCGTAAGTTTCCC 57.832 50.000 0.00 0.00 0.00 3.97
24 25 3.120095 CCATTCCGTTTCCGTAAGTTTCC 60.120 47.826 0.00 0.00 0.00 3.13
25 26 3.747529 TCCATTCCGTTTCCGTAAGTTTC 59.252 43.478 0.00 0.00 0.00 2.78
26 27 3.742385 TCCATTCCGTTTCCGTAAGTTT 58.258 40.909 0.00 0.00 0.00 2.66
27 28 3.007182 TCTCCATTCCGTTTCCGTAAGTT 59.993 43.478 0.00 0.00 0.00 2.66
28 29 2.564062 TCTCCATTCCGTTTCCGTAAGT 59.436 45.455 0.00 0.00 0.00 2.24
29 30 3.241067 TCTCCATTCCGTTTCCGTAAG 57.759 47.619 0.00 0.00 0.00 2.34
30 31 3.681593 TTCTCCATTCCGTTTCCGTAA 57.318 42.857 0.00 0.00 0.00 3.18
31 32 3.244146 TGTTTCTCCATTCCGTTTCCGTA 60.244 43.478 0.00 0.00 0.00 4.02
32 33 2.148768 GTTTCTCCATTCCGTTTCCGT 58.851 47.619 0.00 0.00 0.00 4.69
33 34 2.147958 TGTTTCTCCATTCCGTTTCCG 58.852 47.619 0.00 0.00 0.00 4.30
34 35 4.037565 AGTTTGTTTCTCCATTCCGTTTCC 59.962 41.667 0.00 0.00 0.00 3.13
35 36 5.183014 AGTTTGTTTCTCCATTCCGTTTC 57.817 39.130 0.00 0.00 0.00 2.78
36 37 4.642885 TGAGTTTGTTTCTCCATTCCGTTT 59.357 37.500 0.00 0.00 0.00 3.60
37 38 4.204012 TGAGTTTGTTTCTCCATTCCGTT 58.796 39.130 0.00 0.00 0.00 4.44
38 39 3.815809 TGAGTTTGTTTCTCCATTCCGT 58.184 40.909 0.00 0.00 0.00 4.69
39 40 4.036262 TGTTGAGTTTGTTTCTCCATTCCG 59.964 41.667 0.00 0.00 0.00 4.30
40 41 5.067805 ACTGTTGAGTTTGTTTCTCCATTCC 59.932 40.000 0.00 0.00 0.00 3.01
41 42 6.136541 ACTGTTGAGTTTGTTTCTCCATTC 57.863 37.500 0.00 0.00 0.00 2.67
42 43 6.152661 TGAACTGTTGAGTTTGTTTCTCCATT 59.847 34.615 0.00 0.00 42.80 3.16
43 44 5.652014 TGAACTGTTGAGTTTGTTTCTCCAT 59.348 36.000 0.00 0.00 42.80 3.41
44 45 5.007034 TGAACTGTTGAGTTTGTTTCTCCA 58.993 37.500 0.00 0.00 42.80 3.86
45 46 5.560966 TGAACTGTTGAGTTTGTTTCTCC 57.439 39.130 0.00 0.00 42.80 3.71
46 47 8.375465 CAATTTGAACTGTTGAGTTTGTTTCTC 58.625 33.333 0.00 0.00 42.80 2.87
47 48 8.087750 TCAATTTGAACTGTTGAGTTTGTTTCT 58.912 29.630 0.00 0.00 42.80 2.52
48 49 8.238481 TCAATTTGAACTGTTGAGTTTGTTTC 57.762 30.769 0.00 0.00 42.80 2.78
49 50 8.600449 TTCAATTTGAACTGTTGAGTTTGTTT 57.400 26.923 7.74 0.00 42.80 2.83
64 65 8.131847 TGTGAATATCATGGGTTCAATTTGAA 57.868 30.769 7.74 7.74 34.04 2.69
65 66 7.715266 TGTGAATATCATGGGTTCAATTTGA 57.285 32.000 9.02 0.00 34.04 2.69
66 67 8.951787 ATTGTGAATATCATGGGTTCAATTTG 57.048 30.769 9.02 0.00 34.04 2.32
68 69 9.425248 ACTATTGTGAATATCATGGGTTCAATT 57.575 29.630 9.02 2.76 34.04 2.32
70 71 9.337396 GTACTATTGTGAATATCATGGGTTCAA 57.663 33.333 9.02 0.00 34.04 2.69
71 72 8.713971 AGTACTATTGTGAATATCATGGGTTCA 58.286 33.333 0.00 0.00 0.00 3.18
72 73 9.209175 GAGTACTATTGTGAATATCATGGGTTC 57.791 37.037 0.00 0.00 0.00 3.62
73 74 8.157476 GGAGTACTATTGTGAATATCATGGGTT 58.843 37.037 0.00 0.00 0.00 4.11
74 75 7.514127 AGGAGTACTATTGTGAATATCATGGGT 59.486 37.037 0.00 0.00 0.00 4.51
75 76 7.911651 AGGAGTACTATTGTGAATATCATGGG 58.088 38.462 0.00 0.00 0.00 4.00
76 77 9.429359 GAAGGAGTACTATTGTGAATATCATGG 57.571 37.037 0.00 0.00 0.00 3.66
77 78 9.429359 GGAAGGAGTACTATTGTGAATATCATG 57.571 37.037 0.00 0.00 0.00 3.07
78 79 8.307483 CGGAAGGAGTACTATTGTGAATATCAT 58.693 37.037 0.00 0.00 0.00 2.45
79 80 7.287005 ACGGAAGGAGTACTATTGTGAATATCA 59.713 37.037 0.00 0.00 0.00 2.15
80 81 7.659186 ACGGAAGGAGTACTATTGTGAATATC 58.341 38.462 0.00 0.00 0.00 1.63
81 82 7.598759 ACGGAAGGAGTACTATTGTGAATAT 57.401 36.000 0.00 0.00 0.00 1.28
82 83 7.414222 AACGGAAGGAGTACTATTGTGAATA 57.586 36.000 0.00 0.00 0.00 1.75
83 84 5.934402 ACGGAAGGAGTACTATTGTGAAT 57.066 39.130 0.00 0.00 0.00 2.57
84 85 5.337009 GGAACGGAAGGAGTACTATTGTGAA 60.337 44.000 0.00 0.00 0.00 3.18
85 86 4.159135 GGAACGGAAGGAGTACTATTGTGA 59.841 45.833 0.00 0.00 0.00 3.58
86 87 4.159879 AGGAACGGAAGGAGTACTATTGTG 59.840 45.833 0.00 0.00 0.00 3.33
87 88 4.351127 AGGAACGGAAGGAGTACTATTGT 58.649 43.478 0.00 0.00 0.00 2.71
88 89 6.461110 TTAGGAACGGAAGGAGTACTATTG 57.539 41.667 0.00 0.00 0.00 1.90
89 90 7.672122 ATTTAGGAACGGAAGGAGTACTATT 57.328 36.000 0.00 0.00 0.00 1.73
90 91 8.953223 ATATTTAGGAACGGAAGGAGTACTAT 57.047 34.615 0.00 0.00 0.00 2.12
92 93 8.804204 CATATATTTAGGAACGGAAGGAGTACT 58.196 37.037 0.00 0.00 0.00 2.73
93 94 8.583296 ACATATATTTAGGAACGGAAGGAGTAC 58.417 37.037 0.00 0.00 0.00 2.73
94 95 8.716674 ACATATATTTAGGAACGGAAGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
95 96 7.509659 AGACATATATTTAGGAACGGAAGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
96 97 7.897864 AGACATATATTTAGGAACGGAAGGAG 58.102 38.462 0.00 0.00 0.00 3.69
97 98 7.850935 AGACATATATTTAGGAACGGAAGGA 57.149 36.000 0.00 0.00 0.00 3.36
98 99 8.904099 AAAGACATATATTTAGGAACGGAAGG 57.096 34.615 0.00 0.00 0.00 3.46
127 128 9.191479 CGGAGGGAGTAGTCTATATTGAAATAT 57.809 37.037 0.00 1.44 35.80 1.28
128 129 8.168725 ACGGAGGGAGTAGTCTATATTGAAATA 58.831 37.037 0.00 0.00 0.00 1.40
129 130 7.011382 ACGGAGGGAGTAGTCTATATTGAAAT 58.989 38.462 0.00 0.00 0.00 2.17
130 131 6.371278 ACGGAGGGAGTAGTCTATATTGAAA 58.629 40.000 0.00 0.00 0.00 2.69
131 132 5.950023 ACGGAGGGAGTAGTCTATATTGAA 58.050 41.667 0.00 0.00 0.00 2.69
132 133 5.579753 ACGGAGGGAGTAGTCTATATTGA 57.420 43.478 0.00 0.00 0.00 2.57
133 134 7.664731 TCTTTACGGAGGGAGTAGTCTATATTG 59.335 40.741 0.00 0.00 0.00 1.90
134 135 7.753630 TCTTTACGGAGGGAGTAGTCTATATT 58.246 38.462 0.00 0.00 0.00 1.28
135 136 7.327064 TCTTTACGGAGGGAGTAGTCTATAT 57.673 40.000 0.00 0.00 0.00 0.86
136 137 6.753913 TCTTTACGGAGGGAGTAGTCTATA 57.246 41.667 0.00 0.00 0.00 1.31
137 138 5.643421 TCTTTACGGAGGGAGTAGTCTAT 57.357 43.478 0.00 0.00 0.00 1.98
138 139 5.441718 TTCTTTACGGAGGGAGTAGTCTA 57.558 43.478 0.00 0.00 0.00 2.59
139 140 4.313020 TTCTTTACGGAGGGAGTAGTCT 57.687 45.455 0.00 0.00 0.00 3.24
140 141 5.595257 ATTTCTTTACGGAGGGAGTAGTC 57.405 43.478 0.00 0.00 0.00 2.59
141 142 8.773033 TTATATTTCTTTACGGAGGGAGTAGT 57.227 34.615 0.00 0.00 0.00 2.73
142 143 9.075678 TCTTATATTTCTTTACGGAGGGAGTAG 57.924 37.037 0.00 0.00 0.00 2.57
143 144 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
144 145 7.564292 ACTCTTATATTTCTTTACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
145 146 7.868415 CACTCTTATATTTCTTTACGGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
146 147 7.343833 ACACTCTTATATTTCTTTACGGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
147 148 7.498443 ACACTCTTATATTTCTTTACGGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
148 149 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
208 209 8.768397 TCATATGTACTCCCTCTGTAAACAAAT 58.232 33.333 1.90 0.00 0.00 2.32
209 210 8.141298 TCATATGTACTCCCTCTGTAAACAAA 57.859 34.615 1.90 0.00 0.00 2.83
210 211 7.727578 TCATATGTACTCCCTCTGTAAACAA 57.272 36.000 1.90 0.00 0.00 2.83
211 212 7.727578 TTCATATGTACTCCCTCTGTAAACA 57.272 36.000 1.90 0.00 0.00 2.83
212 213 8.204836 ACATTCATATGTACTCCCTCTGTAAAC 58.795 37.037 1.90 0.00 43.12 2.01
213 214 8.319057 ACATTCATATGTACTCCCTCTGTAAA 57.681 34.615 1.90 0.00 43.12 2.01
214 215 7.914427 ACATTCATATGTACTCCCTCTGTAA 57.086 36.000 1.90 0.00 43.12 2.41
216 217 9.601810 TTATACATTCATATGTACTCCCTCTGT 57.398 33.333 1.90 0.00 46.91 3.41
221 222 9.355215 CGTCTTTATACATTCATATGTACTCCC 57.645 37.037 1.90 0.00 46.91 4.30
222 223 9.909644 ACGTCTTTATACATTCATATGTACTCC 57.090 33.333 1.90 0.00 46.91 3.85
241 242 9.701098 TGAATCTACACACTAAAATACGTCTTT 57.299 29.630 0.00 0.00 0.00 2.52
242 243 9.136952 GTGAATCTACACACTAAAATACGTCTT 57.863 33.333 0.00 0.00 40.11 3.01
243 244 8.521176 AGTGAATCTACACACTAAAATACGTCT 58.479 33.333 0.00 0.00 44.06 4.18
244 245 8.684973 AGTGAATCTACACACTAAAATACGTC 57.315 34.615 0.00 0.00 44.06 4.34
255 256 9.180678 CCAAACAAAATAAGTGAATCTACACAC 57.819 33.333 0.00 0.00 42.45 3.82
256 257 8.908903 ACCAAACAAAATAAGTGAATCTACACA 58.091 29.630 0.00 0.00 42.45 3.72
264 265 9.522804 GACAACATACCAAACAAAATAAGTGAA 57.477 29.630 0.00 0.00 0.00 3.18
265 266 8.908903 AGACAACATACCAAACAAAATAAGTGA 58.091 29.630 0.00 0.00 0.00 3.41
318 319 2.568956 AGTACCCCCTCCGTTCTTAAAC 59.431 50.000 0.00 0.00 0.00 2.01
319 320 2.906568 AGTACCCCCTCCGTTCTTAAA 58.093 47.619 0.00 0.00 0.00 1.52
320 321 2.629017 AGTACCCCCTCCGTTCTTAA 57.371 50.000 0.00 0.00 0.00 1.85
321 322 2.582636 AGTAGTACCCCCTCCGTTCTTA 59.417 50.000 0.00 0.00 0.00 2.10
322 323 1.360507 AGTAGTACCCCCTCCGTTCTT 59.639 52.381 0.00 0.00 0.00 2.52
323 324 1.006020 AGTAGTACCCCCTCCGTTCT 58.994 55.000 0.00 0.00 0.00 3.01
324 325 1.109609 CAGTAGTACCCCCTCCGTTC 58.890 60.000 0.00 0.00 0.00 3.95
325 326 0.411058 ACAGTAGTACCCCCTCCGTT 59.589 55.000 0.00 0.00 0.00 4.44
326 327 1.298953 TACAGTAGTACCCCCTCCGT 58.701 55.000 0.00 0.00 0.00 4.69
327 328 2.442236 TTACAGTAGTACCCCCTCCG 57.558 55.000 0.00 0.00 0.00 4.63
328 329 5.705397 AAAATTACAGTAGTACCCCCTCC 57.295 43.478 0.00 0.00 0.00 4.30
329 330 8.026396 TCATAAAATTACAGTAGTACCCCCTC 57.974 38.462 0.00 0.00 0.00 4.30
330 331 7.847848 TCTCATAAAATTACAGTAGTACCCCCT 59.152 37.037 0.00 0.00 0.00 4.79
331 332 8.026396 TCTCATAAAATTACAGTAGTACCCCC 57.974 38.462 0.00 0.00 0.00 5.40
332 333 9.895138 TTTCTCATAAAATTACAGTAGTACCCC 57.105 33.333 0.00 0.00 0.00 4.95
352 353 9.554724 GCACTTTTGTAATCGAAATATTTCTCA 57.445 29.630 22.52 11.65 35.07 3.27
353 354 9.554724 TGCACTTTTGTAATCGAAATATTTCTC 57.445 29.630 22.52 10.37 35.07 2.87
354 355 9.906660 TTGCACTTTTGTAATCGAAATATTTCT 57.093 25.926 22.52 9.52 35.07 2.52
357 358 9.906660 TCTTTGCACTTTTGTAATCGAAATATT 57.093 25.926 0.00 0.00 0.00 1.28
359 360 9.554724 GATCTTTGCACTTTTGTAATCGAAATA 57.445 29.630 0.00 0.00 0.00 1.40
360 361 8.299570 AGATCTTTGCACTTTTGTAATCGAAAT 58.700 29.630 0.00 0.00 0.00 2.17
361 362 7.648142 AGATCTTTGCACTTTTGTAATCGAAA 58.352 30.769 0.00 0.00 0.00 3.46
362 363 7.202016 AGATCTTTGCACTTTTGTAATCGAA 57.798 32.000 0.00 0.00 0.00 3.71
363 364 6.801539 AGATCTTTGCACTTTTGTAATCGA 57.198 33.333 0.00 0.00 0.00 3.59
364 365 8.948853 TTTAGATCTTTGCACTTTTGTAATCG 57.051 30.769 0.00 0.00 0.00 3.34
395 396 9.685005 GCATTTATTTATATCGTGTCGGAATAC 57.315 33.333 0.00 0.00 0.00 1.89
396 397 9.425577 TGCATTTATTTATATCGTGTCGGAATA 57.574 29.630 0.00 0.00 0.00 1.75
397 398 8.317891 TGCATTTATTTATATCGTGTCGGAAT 57.682 30.769 0.00 0.00 0.00 3.01
398 399 7.716768 TGCATTTATTTATATCGTGTCGGAA 57.283 32.000 0.00 0.00 0.00 4.30
399 400 7.899178 ATGCATTTATTTATATCGTGTCGGA 57.101 32.000 0.00 0.00 0.00 4.55
400 401 8.948853 AAATGCATTTATTTATATCGTGTCGG 57.051 30.769 22.95 0.00 0.00 4.79
401 402 8.766753 CGAAATGCATTTATTTATATCGTGTCG 58.233 33.333 24.15 14.10 30.78 4.35
402 403 9.805966 TCGAAATGCATTTATTTATATCGTGTC 57.194 29.630 24.15 6.31 30.78 3.67
409 410 9.658475 CTCCGTTTCGAAATGCATTTATTTATA 57.342 29.630 24.15 5.96 30.78 0.98
410 411 8.402472 TCTCCGTTTCGAAATGCATTTATTTAT 58.598 29.630 24.15 1.23 30.78 1.40
411 412 7.753659 TCTCCGTTTCGAAATGCATTTATTTA 58.246 30.769 24.15 8.31 30.78 1.40
412 413 6.616947 TCTCCGTTTCGAAATGCATTTATTT 58.383 32.000 24.15 3.41 33.19 1.40
413 414 6.189677 TCTCCGTTTCGAAATGCATTTATT 57.810 33.333 24.15 2.88 0.00 1.40
414 415 5.811399 TCTCCGTTTCGAAATGCATTTAT 57.189 34.783 24.15 3.71 0.00 1.40
415 416 5.180492 ACTTCTCCGTTTCGAAATGCATTTA 59.820 36.000 24.15 7.60 0.00 1.40
416 417 4.023193 ACTTCTCCGTTTCGAAATGCATTT 60.023 37.500 24.33 24.33 0.00 2.32
417 418 3.502211 ACTTCTCCGTTTCGAAATGCATT 59.498 39.130 22.11 5.99 0.00 3.56
418 419 3.074412 ACTTCTCCGTTTCGAAATGCAT 58.926 40.909 22.11 0.00 0.00 3.96
419 420 2.223144 CACTTCTCCGTTTCGAAATGCA 59.777 45.455 22.11 9.01 0.00 3.96
420 421 2.839474 CACTTCTCCGTTTCGAAATGC 58.161 47.619 22.11 6.52 0.00 3.56
421 422 2.223144 TGCACTTCTCCGTTTCGAAATG 59.777 45.455 20.87 20.87 0.00 2.32
422 423 2.489971 TGCACTTCTCCGTTTCGAAAT 58.510 42.857 14.69 0.00 0.00 2.17
423 424 1.942677 TGCACTTCTCCGTTTCGAAA 58.057 45.000 6.47 6.47 0.00 3.46
424 425 1.798223 CATGCACTTCTCCGTTTCGAA 59.202 47.619 0.00 0.00 0.00 3.71
425 426 1.428448 CATGCACTTCTCCGTTTCGA 58.572 50.000 0.00 0.00 0.00 3.71
426 427 0.443869 CCATGCACTTCTCCGTTTCG 59.556 55.000 0.00 0.00 0.00 3.46
427 428 1.808411 TCCATGCACTTCTCCGTTTC 58.192 50.000 0.00 0.00 0.00 2.78
428 429 2.086869 CATCCATGCACTTCTCCGTTT 58.913 47.619 0.00 0.00 0.00 3.60
429 430 1.278985 TCATCCATGCACTTCTCCGTT 59.721 47.619 0.00 0.00 0.00 4.44
430 431 0.904649 TCATCCATGCACTTCTCCGT 59.095 50.000 0.00 0.00 0.00 4.69
431 432 2.028420 TTCATCCATGCACTTCTCCG 57.972 50.000 0.00 0.00 0.00 4.63
432 433 2.883386 GGATTCATCCATGCACTTCTCC 59.117 50.000 0.51 0.00 46.38 3.71
445 446 4.219288 GGTTCATATGCCCTTGGATTCATC 59.781 45.833 0.00 0.00 0.00 2.92
446 447 4.154942 GGTTCATATGCCCTTGGATTCAT 58.845 43.478 0.00 0.00 0.00 2.57
447 448 3.565307 GGTTCATATGCCCTTGGATTCA 58.435 45.455 0.00 0.00 0.00 2.57
448 449 2.893489 GGGTTCATATGCCCTTGGATTC 59.107 50.000 10.37 0.00 41.63 2.52
449 450 2.247111 TGGGTTCATATGCCCTTGGATT 59.753 45.455 16.69 0.00 45.06 3.01
450 451 1.858910 TGGGTTCATATGCCCTTGGAT 59.141 47.619 16.69 0.00 45.06 3.41
451 452 1.064017 GTGGGTTCATATGCCCTTGGA 60.064 52.381 16.69 0.00 45.06 3.53
452 453 1.063717 AGTGGGTTCATATGCCCTTGG 60.064 52.381 16.69 0.00 45.06 3.61
453 454 2.442236 AGTGGGTTCATATGCCCTTG 57.558 50.000 16.69 0.00 45.06 3.61
454 455 3.099141 CAAAGTGGGTTCATATGCCCTT 58.901 45.455 16.69 7.49 45.06 3.95
455 456 2.311542 TCAAAGTGGGTTCATATGCCCT 59.688 45.455 16.69 2.74 45.06 5.19
456 457 2.733956 TCAAAGTGGGTTCATATGCCC 58.266 47.619 10.66 10.66 45.04 5.36
457 458 4.799564 TTTCAAAGTGGGTTCATATGCC 57.200 40.909 0.00 0.00 0.00 4.40
458 459 6.223120 AGTTTTTCAAAGTGGGTTCATATGC 58.777 36.000 0.00 0.00 0.00 3.14
459 460 9.927668 ATAAGTTTTTCAAAGTGGGTTCATATG 57.072 29.630 0.00 0.00 0.00 1.78
461 462 9.974980 GAATAAGTTTTTCAAAGTGGGTTCATA 57.025 29.630 1.64 0.00 0.00 2.15
462 463 7.931407 GGAATAAGTTTTTCAAAGTGGGTTCAT 59.069 33.333 8.11 0.00 0.00 2.57
463 464 7.125053 AGGAATAAGTTTTTCAAAGTGGGTTCA 59.875 33.333 8.11 0.00 0.00 3.18
464 465 7.497595 AGGAATAAGTTTTTCAAAGTGGGTTC 58.502 34.615 8.11 0.00 0.00 3.62
465 466 7.432148 AGGAATAAGTTTTTCAAAGTGGGTT 57.568 32.000 8.11 0.00 0.00 4.11
466 467 8.541899 TTAGGAATAAGTTTTTCAAAGTGGGT 57.458 30.769 8.11 0.00 0.00 4.51
467 468 9.996554 ATTTAGGAATAAGTTTTTCAAAGTGGG 57.003 29.630 8.11 0.00 0.00 4.61
510 511 0.944386 ATGTGTGCGCGAGACTTTTT 59.056 45.000 12.10 0.00 0.00 1.94
511 512 0.512952 GATGTGTGCGCGAGACTTTT 59.487 50.000 12.10 0.00 0.00 2.27
512 513 0.319900 AGATGTGTGCGCGAGACTTT 60.320 50.000 12.10 0.00 0.00 2.66
513 514 0.319900 AAGATGTGTGCGCGAGACTT 60.320 50.000 12.10 1.96 0.00 3.01
514 515 0.734253 GAAGATGTGTGCGCGAGACT 60.734 55.000 12.10 0.00 0.00 3.24
515 516 1.008875 TGAAGATGTGTGCGCGAGAC 61.009 55.000 12.10 5.93 0.00 3.36
516 517 1.008875 GTGAAGATGTGTGCGCGAGA 61.009 55.000 12.10 0.00 0.00 4.04
517 518 1.284297 TGTGAAGATGTGTGCGCGAG 61.284 55.000 12.10 0.00 0.00 5.03
518 519 0.670239 ATGTGAAGATGTGTGCGCGA 60.670 50.000 12.10 0.00 0.00 5.87
519 520 0.166597 AATGTGAAGATGTGTGCGCG 59.833 50.000 0.00 0.00 0.00 6.86
520 521 1.466167 AGAATGTGAAGATGTGTGCGC 59.534 47.619 0.00 0.00 0.00 6.09
521 522 4.784394 GCATAGAATGTGAAGATGTGTGCG 60.784 45.833 0.00 0.00 0.00 5.34
522 523 4.595116 GCATAGAATGTGAAGATGTGTGC 58.405 43.478 0.00 0.00 0.00 4.57
523 524 4.784394 GCGCATAGAATGTGAAGATGTGTG 60.784 45.833 0.30 0.00 43.24 3.82
524 525 3.310774 GCGCATAGAATGTGAAGATGTGT 59.689 43.478 0.30 0.00 43.24 3.72
525 526 3.310501 TGCGCATAGAATGTGAAGATGTG 59.689 43.478 5.66 0.00 43.24 3.21
526 527 3.310774 GTGCGCATAGAATGTGAAGATGT 59.689 43.478 15.91 0.00 43.24 3.06
527 528 3.603173 CGTGCGCATAGAATGTGAAGATG 60.603 47.826 15.91 0.00 43.24 2.90
528 529 2.541346 CGTGCGCATAGAATGTGAAGAT 59.459 45.455 15.91 0.00 43.24 2.40
529 530 1.926510 CGTGCGCATAGAATGTGAAGA 59.073 47.619 15.91 0.00 43.24 2.87
530 531 1.593070 GCGTGCGCATAGAATGTGAAG 60.593 52.381 15.91 0.00 43.24 3.02
531 532 0.373370 GCGTGCGCATAGAATGTGAA 59.627 50.000 15.91 0.00 43.24 3.18
532 533 2.005995 GCGTGCGCATAGAATGTGA 58.994 52.632 15.91 0.00 43.24 3.58
533 534 4.576843 GCGTGCGCATAGAATGTG 57.423 55.556 15.91 0.00 43.42 3.21
543 544 0.852136 ATGAAACTTTTTGCGTGCGC 59.148 45.000 9.85 9.85 42.35 6.09
544 545 1.189884 CCATGAAACTTTTTGCGTGCG 59.810 47.619 0.00 0.00 0.00 5.34
545 546 2.468831 TCCATGAAACTTTTTGCGTGC 58.531 42.857 0.00 0.00 0.00 5.34
546 547 5.462034 TTTTCCATGAAACTTTTTGCGTG 57.538 34.783 0.00 0.00 30.83 5.34
547 548 5.409826 TGTTTTTCCATGAAACTTTTTGCGT 59.590 32.000 9.21 0.00 37.75 5.24
548 549 5.862811 TGTTTTTCCATGAAACTTTTTGCG 58.137 33.333 9.21 0.00 37.75 4.85
549 550 8.686397 ATTTGTTTTTCCATGAAACTTTTTGC 57.314 26.923 9.21 0.00 37.75 3.68
560 561 9.837525 TGTCAAAGAAAAATTTGTTTTTCCATG 57.162 25.926 17.81 16.53 46.58 3.66
562 563 9.837525 CATGTCAAAGAAAAATTTGTTTTTCCA 57.162 25.926 17.81 11.31 46.58 3.53
563 564 9.838975 ACATGTCAAAGAAAAATTTGTTTTTCC 57.161 25.926 17.81 7.34 46.58 3.13
565 566 9.127006 GCACATGTCAAAGAAAAATTTGTTTTT 57.873 25.926 0.00 0.00 40.36 1.94
566 567 8.295288 TGCACATGTCAAAGAAAAATTTGTTTT 58.705 25.926 0.00 0.00 40.36 2.43
567 568 7.814642 TGCACATGTCAAAGAAAAATTTGTTT 58.185 26.923 0.00 0.00 40.36 2.83
568 569 7.375106 TGCACATGTCAAAGAAAAATTTGTT 57.625 28.000 0.00 0.00 40.36 2.83
569 570 6.981762 TGCACATGTCAAAGAAAAATTTGT 57.018 29.167 0.00 0.00 40.36 2.83
570 571 8.670804 TTTTGCACATGTCAAAGAAAAATTTG 57.329 26.923 17.17 0.00 40.75 2.32
603 604 7.743520 AAATAACGTTTCACGACACATTTTT 57.256 28.000 5.91 0.00 46.05 1.94
604 605 8.336806 TCTAAATAACGTTTCACGACACATTTT 58.663 29.630 5.91 0.00 46.05 1.82
605 606 7.853524 TCTAAATAACGTTTCACGACACATTT 58.146 30.769 5.91 5.65 46.05 2.32
606 607 7.410800 TCTAAATAACGTTTCACGACACATT 57.589 32.000 5.91 0.00 46.05 2.71
607 608 7.410800 TTCTAAATAACGTTTCACGACACAT 57.589 32.000 5.91 0.00 46.05 3.21
608 609 6.562640 GCTTCTAAATAACGTTTCACGACACA 60.563 38.462 5.91 0.00 46.05 3.72
609 610 5.782200 GCTTCTAAATAACGTTTCACGACAC 59.218 40.000 5.91 0.00 46.05 3.67
610 611 5.462729 TGCTTCTAAATAACGTTTCACGACA 59.537 36.000 5.91 0.00 46.05 4.35
611 612 5.782200 GTGCTTCTAAATAACGTTTCACGAC 59.218 40.000 5.91 0.00 46.05 4.34
612 613 5.693104 AGTGCTTCTAAATAACGTTTCACGA 59.307 36.000 5.91 0.00 46.05 4.35
614 615 6.073440 TCCAGTGCTTCTAAATAACGTTTCAC 60.073 38.462 5.91 1.81 0.00 3.18
615 616 5.992829 TCCAGTGCTTCTAAATAACGTTTCA 59.007 36.000 5.91 0.00 0.00 2.69
616 617 6.476243 TCCAGTGCTTCTAAATAACGTTTC 57.524 37.500 5.91 0.00 0.00 2.78
617 618 6.870971 TTCCAGTGCTTCTAAATAACGTTT 57.129 33.333 5.91 0.00 0.00 3.60
618 619 7.448748 AATTCCAGTGCTTCTAAATAACGTT 57.551 32.000 5.88 5.88 0.00 3.99
619 620 7.040686 ACAAATTCCAGTGCTTCTAAATAACGT 60.041 33.333 0.00 0.00 0.00 3.99
620 621 7.305474 ACAAATTCCAGTGCTTCTAAATAACG 58.695 34.615 0.00 0.00 0.00 3.18
621 622 9.476202 AAACAAATTCCAGTGCTTCTAAATAAC 57.524 29.630 0.00 0.00 0.00 1.89
624 625 8.962884 AAAAACAAATTCCAGTGCTTCTAAAT 57.037 26.923 0.00 0.00 0.00 1.40
689 690 1.468127 CTTCGCAATATGTGTGTGGCA 59.532 47.619 0.00 0.00 38.94 4.92
690 691 1.737236 TCTTCGCAATATGTGTGTGGC 59.263 47.619 0.00 0.00 38.94 5.01
691 692 3.374988 ACATCTTCGCAATATGTGTGTGG 59.625 43.478 0.00 0.00 38.94 4.17
692 693 4.604843 ACATCTTCGCAATATGTGTGTG 57.395 40.909 0.00 0.00 38.94 3.82
693 694 5.277490 GCATACATCTTCGCAATATGTGTGT 60.277 40.000 16.67 0.00 41.81 3.72
694 695 5.142265 GCATACATCTTCGCAATATGTGTG 58.858 41.667 13.86 13.86 42.34 3.82
695 696 4.084380 CGCATACATCTTCGCAATATGTGT 60.084 41.667 0.00 0.00 35.54 3.72
696 697 4.084380 ACGCATACATCTTCGCAATATGTG 60.084 41.667 0.00 0.00 38.89 3.21
697 698 4.058124 ACGCATACATCTTCGCAATATGT 58.942 39.130 0.00 0.00 37.58 2.29
698 699 4.150451 TCACGCATACATCTTCGCAATATG 59.850 41.667 0.00 0.00 0.00 1.78
699 700 4.306600 TCACGCATACATCTTCGCAATAT 58.693 39.130 0.00 0.00 0.00 1.28
700 701 3.712187 TCACGCATACATCTTCGCAATA 58.288 40.909 0.00 0.00 0.00 1.90
701 702 2.549926 TCACGCATACATCTTCGCAAT 58.450 42.857 0.00 0.00 0.00 3.56
702 703 2.003196 TCACGCATACATCTTCGCAA 57.997 45.000 0.00 0.00 0.00 4.85
703 704 2.223537 ATCACGCATACATCTTCGCA 57.776 45.000 0.00 0.00 0.00 5.10
704 705 4.910746 AATATCACGCATACATCTTCGC 57.089 40.909 0.00 0.00 0.00 4.70
746 747 8.364894 GGAGGGAGTACATTTTAAACACATTTT 58.635 33.333 0.00 0.00 0.00 1.82
747 748 7.507616 TGGAGGGAGTACATTTTAAACACATTT 59.492 33.333 0.00 0.00 0.00 2.32
748 749 7.007723 TGGAGGGAGTACATTTTAAACACATT 58.992 34.615 0.00 0.00 0.00 2.71
749 750 6.548321 TGGAGGGAGTACATTTTAAACACAT 58.452 36.000 0.00 0.00 0.00 3.21
750 751 5.942961 TGGAGGGAGTACATTTTAAACACA 58.057 37.500 0.00 0.00 0.00 3.72
751 752 6.095021 GGATGGAGGGAGTACATTTTAAACAC 59.905 42.308 0.00 0.00 0.00 3.32
752 753 6.184789 GGATGGAGGGAGTACATTTTAAACA 58.815 40.000 0.00 0.00 0.00 2.83
753 754 6.184789 TGGATGGAGGGAGTACATTTTAAAC 58.815 40.000 0.00 0.00 0.00 2.01
754 755 6.395780 TGGATGGAGGGAGTACATTTTAAA 57.604 37.500 0.00 0.00 0.00 1.52
755 756 6.395780 TTGGATGGAGGGAGTACATTTTAA 57.604 37.500 0.00 0.00 0.00 1.52
756 757 6.395780 TTTGGATGGAGGGAGTACATTTTA 57.604 37.500 0.00 0.00 0.00 1.52
757 758 4.946160 TTGGATGGAGGGAGTACATTTT 57.054 40.909 0.00 0.00 0.00 1.82
758 759 4.946160 TTTGGATGGAGGGAGTACATTT 57.054 40.909 0.00 0.00 0.00 2.32
759 760 4.946160 TTTTGGATGGAGGGAGTACATT 57.054 40.909 0.00 0.00 0.00 2.71
760 761 4.946160 TTTTTGGATGGAGGGAGTACAT 57.054 40.909 0.00 0.00 0.00 2.29
761 762 4.946160 ATTTTTGGATGGAGGGAGTACA 57.054 40.909 0.00 0.00 0.00 2.90
762 763 6.002653 AGTATTTTTGGATGGAGGGAGTAC 57.997 41.667 0.00 0.00 0.00 2.73
763 764 6.011981 ACAAGTATTTTTGGATGGAGGGAGTA 60.012 38.462 0.00 0.00 32.32 2.59
764 765 5.222337 ACAAGTATTTTTGGATGGAGGGAGT 60.222 40.000 0.00 0.00 32.32 3.85
765 766 5.264395 ACAAGTATTTTTGGATGGAGGGAG 58.736 41.667 0.00 0.00 32.32 4.30
766 767 5.269554 ACAAGTATTTTTGGATGGAGGGA 57.730 39.130 0.00 0.00 32.32 4.20
767 768 7.341769 TGATAACAAGTATTTTTGGATGGAGGG 59.658 37.037 0.00 0.00 32.32 4.30
768 769 8.292444 TGATAACAAGTATTTTTGGATGGAGG 57.708 34.615 0.00 0.00 32.32 4.30
837 838 9.790344 CCTCAAAATGGATAGAAAGAGATGTAT 57.210 33.333 0.00 0.00 0.00 2.29
838 839 8.992349 TCCTCAAAATGGATAGAAAGAGATGTA 58.008 33.333 0.00 0.00 0.00 2.29
839 840 7.772757 GTCCTCAAAATGGATAGAAAGAGATGT 59.227 37.037 0.00 0.00 35.87 3.06
840 841 7.772292 TGTCCTCAAAATGGATAGAAAGAGATG 59.228 37.037 0.00 0.00 35.87 2.90
841 842 7.865820 TGTCCTCAAAATGGATAGAAAGAGAT 58.134 34.615 0.00 0.00 35.87 2.75
842 843 7.257790 TGTCCTCAAAATGGATAGAAAGAGA 57.742 36.000 0.00 0.00 35.87 3.10
843 844 7.928307 TTGTCCTCAAAATGGATAGAAAGAG 57.072 36.000 0.00 0.00 35.87 2.85
844 845 8.884124 ATTTGTCCTCAAAATGGATAGAAAGA 57.116 30.769 0.00 0.00 44.97 2.52
849 850 9.971922 GGAAATATTTGTCCTCAAAATGGATAG 57.028 33.333 5.17 0.00 44.97 2.08
850 851 8.629158 CGGAAATATTTGTCCTCAAAATGGATA 58.371 33.333 5.17 0.00 44.97 2.59
851 852 7.124147 ACGGAAATATTTGTCCTCAAAATGGAT 59.876 33.333 5.17 0.00 44.97 3.41
852 853 6.435904 ACGGAAATATTTGTCCTCAAAATGGA 59.564 34.615 5.17 0.00 44.97 3.41
853 854 6.630071 ACGGAAATATTTGTCCTCAAAATGG 58.370 36.000 5.17 0.00 44.97 3.16
854 855 9.801873 ATAACGGAAATATTTGTCCTCAAAATG 57.198 29.630 5.17 0.00 44.97 2.32
888 889 3.382227 CACACATGTGCATATGAACCCAT 59.618 43.478 27.77 3.36 39.39 4.00
916 917 0.245539 TTCCGTTTAGAGAGGGCACG 59.754 55.000 0.00 0.00 0.00 5.34
927 928 1.474077 GGAGTAGCCTCGTTCCGTTTA 59.526 52.381 0.00 0.00 38.70 2.01
933 934 2.979130 GCATGGAGTAGCCTCGTTC 58.021 57.895 0.00 0.00 38.70 3.95
970 971 1.135960 GAGAGGGAGATTTCAGGGGG 58.864 60.000 0.00 0.00 0.00 5.40
974 975 3.699038 AGAAGACGAGAGGGAGATTTCAG 59.301 47.826 0.00 0.00 0.00 3.02
975 976 3.697045 GAGAAGACGAGAGGGAGATTTCA 59.303 47.826 0.00 0.00 0.00 2.69
976 977 3.242936 CGAGAAGACGAGAGGGAGATTTC 60.243 52.174 0.00 0.00 35.09 2.17
977 978 2.685897 CGAGAAGACGAGAGGGAGATTT 59.314 50.000 0.00 0.00 35.09 2.17
978 979 2.294074 CGAGAAGACGAGAGGGAGATT 58.706 52.381 0.00 0.00 35.09 2.40
979 980 1.210967 ACGAGAAGACGAGAGGGAGAT 59.789 52.381 0.00 0.00 37.03 2.75
980 981 0.614294 ACGAGAAGACGAGAGGGAGA 59.386 55.000 0.00 0.00 37.03 3.71
981 982 2.312722 TACGAGAAGACGAGAGGGAG 57.687 55.000 0.00 0.00 37.03 4.30
982 983 2.562635 CATACGAGAAGACGAGAGGGA 58.437 52.381 0.00 0.00 37.03 4.20
983 984 1.002251 GCATACGAGAAGACGAGAGGG 60.002 57.143 0.00 0.00 37.03 4.30
1230 1231 1.003573 GGAGAGGGTGAGGTGGGAT 59.996 63.158 0.00 0.00 0.00 3.85
1536 1537 4.657824 ACGAACGCGGACACCAGG 62.658 66.667 12.47 0.00 43.17 4.45
1590 1591 2.126071 ACAACGTCCATCTCGCCG 60.126 61.111 0.00 0.00 0.00 6.46
1712 1713 1.026718 CCCAACGATGAGTTCCAGCC 61.027 60.000 0.00 0.00 42.02 4.85
1818 1819 4.443457 CCACTTATCATGACCGTCCAAGAT 60.443 45.833 0.00 0.05 0.00 2.40
1848 1849 2.435586 CTCGGAAGCCTGCAGTGG 60.436 66.667 13.81 0.00 0.00 4.00
1990 1991 7.544622 TCGATGCCTTTACGCTCTATATATTT 58.455 34.615 0.00 0.00 0.00 1.40
2022 2023 0.749091 ATGATGTCCCCACATGCACG 60.749 55.000 0.00 0.00 43.79 5.34
2109 2110 6.140786 CGCATTCCAAGATGATACATTCTTG 58.859 40.000 5.83 5.83 45.40 3.02
2382 2383 9.646522 ATGACCTTAATTAAACCATATGCTTCT 57.353 29.630 0.00 0.00 0.00 2.85
2481 2482 3.257469 TGCCTTAGAATCTGCTGTGAG 57.743 47.619 0.00 0.00 0.00 3.51
2723 2724 2.097954 TGCCTCATTAGCATGAAAAGCG 59.902 45.455 0.00 0.00 39.04 4.68
2868 2869 9.681692 GATGATGCTAACAATGTGCAATTATTA 57.318 29.630 2.53 0.00 40.24 0.98
2869 2870 8.418662 AGATGATGCTAACAATGTGCAATTATT 58.581 29.630 2.53 0.00 40.24 1.40
2871 2872 7.197703 CAGATGATGCTAACAATGTGCAATTA 58.802 34.615 2.53 0.00 40.24 1.40
2872 2873 6.040247 CAGATGATGCTAACAATGTGCAATT 58.960 36.000 2.53 0.00 40.24 2.32
2930 2933 5.755861 GCAGTAGTCATTCCAAGGTTAGATC 59.244 44.000 0.00 0.00 0.00 2.75
2993 2996 5.691754 CAGATTTTTAACGCCAGAAAAGCTT 59.308 36.000 0.00 0.00 37.02 3.74
3074 3077 0.260230 TCCAAGAGGCACCCAACAAA 59.740 50.000 0.00 0.00 33.74 2.83
3098 3101 1.349026 CAAGAACTGAAGAGGGGCAGA 59.651 52.381 0.00 0.00 36.07 4.26
3099 3102 1.349026 TCAAGAACTGAAGAGGGGCAG 59.651 52.381 0.00 0.00 38.10 4.85
3104 3107 6.429078 TCAATCATGTTCAAGAACTGAAGAGG 59.571 38.462 13.49 6.90 44.83 3.69
3163 3167 3.887621 TTAAGGGTCAGAGTCCATTCG 57.112 47.619 0.00 0.00 31.40 3.34
3183 3187 1.063567 TGGGTTTGTACCAGTGCCTTT 60.064 47.619 0.00 0.00 46.96 3.11
3194 3198 6.427547 CGGTTACAAATTAGTCTGGGTTTGTA 59.572 38.462 11.85 11.85 42.70 2.41
3217 3221 7.437793 TTTTACCTCACCTTGTATAAAACGG 57.562 36.000 0.00 0.00 0.00 4.44
3252 3256 8.153550 AGTCTCAACTCAATCTGATGTAAAAGT 58.846 33.333 0.00 0.00 0.00 2.66
3317 3322 4.392940 ACAAGGCTGGTATATTCTGCATC 58.607 43.478 0.00 0.00 0.00 3.91
3354 3364 3.963428 ACTTCAGAGGCGAATAACAGT 57.037 42.857 0.00 0.00 0.00 3.55
3355 3365 5.463724 GGATAACTTCAGAGGCGAATAACAG 59.536 44.000 0.00 0.00 0.00 3.16
3356 3366 5.128827 AGGATAACTTCAGAGGCGAATAACA 59.871 40.000 0.00 0.00 0.00 2.41
3359 3369 4.893524 TCAGGATAACTTCAGAGGCGAATA 59.106 41.667 0.00 0.00 0.00 1.75
3360 3370 3.706594 TCAGGATAACTTCAGAGGCGAAT 59.293 43.478 0.00 0.00 0.00 3.34
3361 3371 3.096852 TCAGGATAACTTCAGAGGCGAA 58.903 45.455 0.00 0.00 0.00 4.70
3362 3372 2.735151 TCAGGATAACTTCAGAGGCGA 58.265 47.619 0.00 0.00 0.00 5.54
3363 3373 3.452474 CTTCAGGATAACTTCAGAGGCG 58.548 50.000 0.00 0.00 0.00 5.52
3364 3374 3.202097 GCTTCAGGATAACTTCAGAGGC 58.798 50.000 0.00 0.00 0.00 4.70
3365 3375 3.454082 AGGCTTCAGGATAACTTCAGAGG 59.546 47.826 0.00 0.00 0.00 3.69
3417 3428 7.516198 AGCAGAACAAAGAACTAATGATGTT 57.484 32.000 0.00 0.00 34.01 2.71
3551 3562 4.637483 ACAATGTCACCTTGAACAACAG 57.363 40.909 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.