Multiple sequence alignment - TraesCS2A01G344800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G344800 chr2A 100.000 4218 0 0 1 4218 582637446 582633229 0.000000e+00 7790
1 TraesCS2A01G344800 chr2A 94.046 991 56 3 3229 4218 103273228 103274216 0.000000e+00 1500
2 TraesCS2A01G344800 chr2A 95.888 608 22 2 1496 2103 581945754 581945150 0.000000e+00 981
3 TraesCS2A01G344800 chr2A 89.200 500 42 6 2732 3223 581944213 581943718 7.750000e-172 614
4 TraesCS2A01G344800 chr2A 86.423 383 29 7 882 1245 581959622 581959244 8.500000e-107 398
5 TraesCS2A01G344800 chr2A 92.896 183 13 0 1241 1423 581950658 581950476 2.500000e-67 267
6 TraesCS2A01G344800 chr2A 84.825 257 31 6 2397 2652 581944508 581944259 7.000000e-63 252
7 TraesCS2A01G344800 chr3A 94.944 989 49 1 3230 4218 167819834 167820821 0.000000e+00 1548
8 TraesCS2A01G344800 chr3A 94.242 990 57 0 3229 4218 461002065 461001076 0.000000e+00 1513
9 TraesCS2A01G344800 chr5A 94.747 990 52 0 3229 4218 545193626 545192637 0.000000e+00 1541
10 TraesCS2A01G344800 chr5A 93.838 990 61 0 3229 4218 168468618 168469607 0.000000e+00 1491
11 TraesCS2A01G344800 chr7A 94.141 990 58 0 3229 4218 42896655 42897644 0.000000e+00 1507
12 TraesCS2A01G344800 chr7A 94.040 990 59 0 3229 4218 401696986 401697975 0.000000e+00 1502
13 TraesCS2A01G344800 chr7A 93.737 990 62 0 3229 4218 726056122 726057111 0.000000e+00 1485
14 TraesCS2A01G344800 chr2B 89.729 1217 67 30 237 1437 488197345 488196171 0.000000e+00 1502
15 TraesCS2A01G344800 chr2B 89.276 746 51 15 1495 2216 488196024 488195284 0.000000e+00 907
16 TraesCS2A01G344800 chr2B 88.703 478 46 7 2753 3225 488194903 488194429 1.020000e-160 577
17 TraesCS2A01G344800 chr2B 92.578 256 13 4 2397 2652 488195193 488194944 3.100000e-96 363
18 TraesCS2A01G344800 chr6A 93.737 990 62 0 3229 4218 458137519 458136530 0.000000e+00 1485
19 TraesCS2A01G344800 chr6A 90.625 96 7 2 2309 2402 607845421 607845516 4.430000e-25 126
20 TraesCS2A01G344800 chr2D 98.191 829 15 0 2397 3225 416391749 416390921 0.000000e+00 1448
21 TraesCS2A01G344800 chr2D 93.706 715 33 7 1496 2209 414959489 414958786 0.000000e+00 1061
22 TraesCS2A01G344800 chr2D 93.081 607 18 9 1731 2315 416392352 416391748 0.000000e+00 867
23 TraesCS2A01G344800 chr2D 90.226 665 38 11 781 1437 416397986 416397341 0.000000e+00 843
24 TraesCS2A01G344800 chr2D 89.391 575 38 11 882 1437 414960214 414959644 0.000000e+00 702
25 TraesCS2A01G344800 chr2D 87.747 506 43 8 2732 3225 414958308 414957810 1.320000e-159 573
26 TraesCS2A01G344800 chr2D 87.398 492 19 9 185 649 416398500 416398025 3.740000e-145 525
27 TraesCS2A01G344800 chr2D 88.933 253 13 3 1495 1735 416397194 416396945 8.870000e-77 298
28 TraesCS2A01G344800 chr2D 90.426 94 9 0 2305 2398 525600390 525600483 1.590000e-24 124
29 TraesCS2A01G344800 chr5D 92.941 85 6 0 2314 2398 159411431 159411347 1.590000e-24 124
30 TraesCS2A01G344800 chr5D 90.805 87 6 2 2314 2398 535136174 535136260 9.580000e-22 115
31 TraesCS2A01G344800 chr6B 89.362 94 10 0 2305 2398 493883944 493884037 7.410000e-23 119
32 TraesCS2A01G344800 chr1D 91.765 85 7 0 2314 2398 268435954 268435870 7.410000e-23 119
33 TraesCS2A01G344800 chr4D 89.362 94 8 1 2305 2398 299700367 299700458 2.660000e-22 117
34 TraesCS2A01G344800 chr7B 90.588 85 8 0 2314 2398 428965929 428965845 3.450000e-21 113
35 TraesCS2A01G344800 chr4A 88.043 92 11 0 2314 2405 590227926 590228017 4.460000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G344800 chr2A 582633229 582637446 4217 True 7790.000000 7790 100.000000 1 4218 1 chr2A.!!$R3 4217
1 TraesCS2A01G344800 chr2A 103273228 103274216 988 False 1500.000000 1500 94.046000 3229 4218 1 chr2A.!!$F1 989
2 TraesCS2A01G344800 chr2A 581943718 581945754 2036 True 615.666667 981 89.971000 1496 3223 3 chr2A.!!$R4 1727
3 TraesCS2A01G344800 chr3A 167819834 167820821 987 False 1548.000000 1548 94.944000 3230 4218 1 chr3A.!!$F1 988
4 TraesCS2A01G344800 chr3A 461001076 461002065 989 True 1513.000000 1513 94.242000 3229 4218 1 chr3A.!!$R1 989
5 TraesCS2A01G344800 chr5A 545192637 545193626 989 True 1541.000000 1541 94.747000 3229 4218 1 chr5A.!!$R1 989
6 TraesCS2A01G344800 chr5A 168468618 168469607 989 False 1491.000000 1491 93.838000 3229 4218 1 chr5A.!!$F1 989
7 TraesCS2A01G344800 chr7A 42896655 42897644 989 False 1507.000000 1507 94.141000 3229 4218 1 chr7A.!!$F1 989
8 TraesCS2A01G344800 chr7A 401696986 401697975 989 False 1502.000000 1502 94.040000 3229 4218 1 chr7A.!!$F2 989
9 TraesCS2A01G344800 chr7A 726056122 726057111 989 False 1485.000000 1485 93.737000 3229 4218 1 chr7A.!!$F3 989
10 TraesCS2A01G344800 chr2B 488194429 488197345 2916 True 837.250000 1502 90.071500 237 3225 4 chr2B.!!$R1 2988
11 TraesCS2A01G344800 chr6A 458136530 458137519 989 True 1485.000000 1485 93.737000 3229 4218 1 chr6A.!!$R1 989
12 TraesCS2A01G344800 chr2D 416390921 416392352 1431 True 1157.500000 1448 95.636000 1731 3225 2 chr2D.!!$R2 1494
13 TraesCS2A01G344800 chr2D 414957810 414960214 2404 True 778.666667 1061 90.281333 882 3225 3 chr2D.!!$R1 2343
14 TraesCS2A01G344800 chr2D 416396945 416398500 1555 True 555.333333 843 88.852333 185 1735 3 chr2D.!!$R3 1550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.109132 CGCCTCAAAACATTCCAGGC 60.109 55.0 0.0 0.0 45.39 4.85 F
678 719 0.250252 TTCCGGTTTGACCCCGTTAC 60.250 55.0 0.0 0.0 43.98 2.50 F
1451 1525 0.107312 ATGTCAGCAGCATCCTGGTC 60.107 55.0 0.0 0.0 46.22 4.02 F
1460 1534 0.107945 GCATCCTGGTCCACTCTGTC 60.108 60.0 0.0 0.0 0.00 3.51 F
2396 3118 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 1513 0.107800 CAGAGTGGACCAGGATGCTG 60.108 60.0 7.35 7.35 31.97 4.41 R
2377 3099 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.0 0.00 0.00 0.00 1.90 R
2379 3101 0.042131 ATACTCCCTCCGTCCCACAA 59.958 55.0 0.00 0.00 0.00 3.33 R
3148 3895 0.884514 CTGCGAGTCTGAAGACCTCA 59.115 55.0 6.84 2.57 45.85 3.86 R
3851 4598 0.749649 CCATCCTAGCGTTCTCTGCT 59.250 55.0 0.00 0.00 46.29 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.435059 GTCCAGCCAACGCTCCTC 60.435 66.667 0.00 0.00 43.95 3.71
18 19 4.069232 TCCAGCCAACGCTCCTCG 62.069 66.667 0.00 0.00 43.95 4.63
20 21 4.749310 CAGCCAACGCTCCTCGCT 62.749 66.667 0.00 0.00 43.95 4.93
21 22 4.749310 AGCCAACGCTCCTCGCTG 62.749 66.667 0.00 0.00 43.95 5.18
23 24 4.749310 CCAACGCTCCTCGCTGCT 62.749 66.667 0.00 0.00 43.23 4.24
24 25 3.485431 CAACGCTCCTCGCTGCTG 61.485 66.667 0.00 0.00 43.23 4.41
29 30 3.459965 CTCCTCGCTGCTGCTCCT 61.460 66.667 14.03 0.00 36.97 3.69
30 31 3.429080 CTCCTCGCTGCTGCTCCTC 62.429 68.421 14.03 0.00 36.97 3.71
31 32 3.767806 CCTCGCTGCTGCTCCTCA 61.768 66.667 14.03 0.00 36.97 3.86
32 33 2.508887 CTCGCTGCTGCTCCTCAC 60.509 66.667 14.03 0.00 36.97 3.51
33 34 4.426112 TCGCTGCTGCTCCTCACG 62.426 66.667 14.03 0.00 36.97 4.35
35 36 4.385405 GCTGCTGCTCCTCACGGT 62.385 66.667 8.53 0.00 36.03 4.83
36 37 2.433838 CTGCTGCTCCTCACGGTG 60.434 66.667 0.56 0.56 0.00 4.94
37 38 3.231889 CTGCTGCTCCTCACGGTGT 62.232 63.158 8.17 0.00 0.00 4.16
38 39 2.031163 GCTGCTCCTCACGGTGTT 59.969 61.111 8.17 0.00 0.00 3.32
39 40 2.029844 GCTGCTCCTCACGGTGTTC 61.030 63.158 8.17 0.00 0.00 3.18
40 41 1.374758 CTGCTCCTCACGGTGTTCC 60.375 63.158 8.17 0.00 0.00 3.62
41 42 2.047179 GCTCCTCACGGTGTTCCC 60.047 66.667 8.17 0.00 0.00 3.97
50 51 3.351450 GGTGTTCCCGTCTTTGGC 58.649 61.111 0.00 0.00 0.00 4.52
51 52 2.265904 GGTGTTCCCGTCTTTGGCC 61.266 63.158 0.00 0.00 0.00 5.36
52 53 1.527380 GTGTTCCCGTCTTTGGCCA 60.527 57.895 0.00 0.00 0.00 5.36
53 54 0.893727 GTGTTCCCGTCTTTGGCCAT 60.894 55.000 6.09 0.00 0.00 4.40
54 55 0.893270 TGTTCCCGTCTTTGGCCATG 60.893 55.000 6.09 2.48 0.00 3.66
55 56 1.976474 TTCCCGTCTTTGGCCATGC 60.976 57.895 6.09 0.00 0.00 4.06
56 57 3.814268 CCCGTCTTTGGCCATGCG 61.814 66.667 6.09 9.04 0.00 4.73
57 58 4.481112 CCGTCTTTGGCCATGCGC 62.481 66.667 6.09 0.00 0.00 6.09
58 59 3.434319 CGTCTTTGGCCATGCGCT 61.434 61.111 6.09 0.00 37.74 5.92
59 60 2.180017 GTCTTTGGCCATGCGCTG 59.820 61.111 6.09 4.25 37.74 5.18
60 61 3.751246 TCTTTGGCCATGCGCTGC 61.751 61.111 6.09 8.89 37.74 5.25
73 74 2.099062 GCTGCGCGGAATTGACTG 59.901 61.111 23.20 0.00 0.00 3.51
74 75 2.390599 GCTGCGCGGAATTGACTGA 61.391 57.895 23.20 0.00 0.00 3.41
75 76 1.421485 CTGCGCGGAATTGACTGAC 59.579 57.895 11.90 0.00 0.00 3.51
76 77 2.283780 CTGCGCGGAATTGACTGACG 62.284 60.000 11.90 0.00 0.00 4.35
77 78 2.395690 CGCGGAATTGACTGACGC 59.604 61.111 0.00 0.00 46.04 5.19
78 79 2.785258 GCGGAATTGACTGACGCC 59.215 61.111 0.00 0.00 44.01 5.68
79 80 1.741770 GCGGAATTGACTGACGCCT 60.742 57.895 0.00 0.00 44.01 5.52
80 81 1.696832 GCGGAATTGACTGACGCCTC 61.697 60.000 0.00 0.00 44.01 4.70
81 82 0.389817 CGGAATTGACTGACGCCTCA 60.390 55.000 0.00 0.00 0.00 3.86
82 83 1.808411 GGAATTGACTGACGCCTCAA 58.192 50.000 0.00 0.00 0.00 3.02
83 84 2.151202 GGAATTGACTGACGCCTCAAA 58.849 47.619 0.00 0.00 30.32 2.69
84 85 2.552315 GGAATTGACTGACGCCTCAAAA 59.448 45.455 0.00 0.00 30.32 2.44
85 86 3.555518 GAATTGACTGACGCCTCAAAAC 58.444 45.455 0.00 0.00 30.32 2.43
86 87 2.031258 TTGACTGACGCCTCAAAACA 57.969 45.000 0.00 0.00 0.00 2.83
87 88 2.254546 TGACTGACGCCTCAAAACAT 57.745 45.000 0.00 0.00 0.00 2.71
88 89 2.571212 TGACTGACGCCTCAAAACATT 58.429 42.857 0.00 0.00 0.00 2.71
89 90 2.548057 TGACTGACGCCTCAAAACATTC 59.452 45.455 0.00 0.00 0.00 2.67
90 91 1.880027 ACTGACGCCTCAAAACATTCC 59.120 47.619 0.00 0.00 0.00 3.01
91 92 1.879380 CTGACGCCTCAAAACATTCCA 59.121 47.619 0.00 0.00 0.00 3.53
92 93 1.879380 TGACGCCTCAAAACATTCCAG 59.121 47.619 0.00 0.00 0.00 3.86
93 94 1.200020 GACGCCTCAAAACATTCCAGG 59.800 52.381 0.00 0.00 0.00 4.45
94 95 0.109132 CGCCTCAAAACATTCCAGGC 60.109 55.000 0.00 0.00 45.39 4.85
95 96 0.109132 GCCTCAAAACATTCCAGGCG 60.109 55.000 0.00 0.00 40.37 5.52
96 97 1.247567 CCTCAAAACATTCCAGGCGT 58.752 50.000 0.00 0.00 0.00 5.68
97 98 1.200020 CCTCAAAACATTCCAGGCGTC 59.800 52.381 0.00 0.00 0.00 5.19
98 99 2.154462 CTCAAAACATTCCAGGCGTCT 58.846 47.619 0.00 0.00 0.00 4.18
99 100 1.879380 TCAAAACATTCCAGGCGTCTG 59.121 47.619 10.88 10.88 40.59 3.51
100 101 1.879380 CAAAACATTCCAGGCGTCTGA 59.121 47.619 20.91 0.00 43.49 3.27
101 102 1.523758 AAACATTCCAGGCGTCTGAC 58.476 50.000 20.91 0.00 43.49 3.51
102 103 0.396435 AACATTCCAGGCGTCTGACA 59.604 50.000 20.91 4.33 43.49 3.58
103 104 0.396435 ACATTCCAGGCGTCTGACAA 59.604 50.000 20.91 11.30 43.49 3.18
104 105 1.003580 ACATTCCAGGCGTCTGACAAT 59.996 47.619 20.91 13.21 43.49 2.71
105 106 2.086869 CATTCCAGGCGTCTGACAATT 58.913 47.619 20.91 0.00 43.49 2.32
106 107 3.270027 CATTCCAGGCGTCTGACAATTA 58.730 45.455 20.91 0.00 43.49 1.40
107 108 3.410631 TTCCAGGCGTCTGACAATTAA 57.589 42.857 20.91 0.00 43.49 1.40
108 109 3.627395 TCCAGGCGTCTGACAATTAAT 57.373 42.857 20.91 0.00 43.49 1.40
109 110 4.746535 TCCAGGCGTCTGACAATTAATA 57.253 40.909 20.91 0.00 43.49 0.98
110 111 5.092554 TCCAGGCGTCTGACAATTAATAA 57.907 39.130 20.91 0.00 43.49 1.40
111 112 5.492895 TCCAGGCGTCTGACAATTAATAAA 58.507 37.500 20.91 0.00 43.49 1.40
112 113 5.584649 TCCAGGCGTCTGACAATTAATAAAG 59.415 40.000 20.91 0.00 43.49 1.85
113 114 5.266242 CAGGCGTCTGACAATTAATAAAGC 58.734 41.667 12.86 0.00 43.49 3.51
114 115 4.335594 AGGCGTCTGACAATTAATAAAGCC 59.664 41.667 8.73 8.09 39.90 4.35
115 116 4.095782 GGCGTCTGACAATTAATAAAGCCA 59.904 41.667 8.73 0.00 39.44 4.75
116 117 5.266242 GCGTCTGACAATTAATAAAGCCAG 58.734 41.667 8.73 0.00 0.00 4.85
117 118 5.266242 CGTCTGACAATTAATAAAGCCAGC 58.734 41.667 8.73 0.00 0.00 4.85
118 119 5.266242 GTCTGACAATTAATAAAGCCAGCG 58.734 41.667 2.24 0.00 0.00 5.18
119 120 4.335315 TCTGACAATTAATAAAGCCAGCGG 59.665 41.667 0.00 0.00 0.00 5.52
120 121 4.013728 TGACAATTAATAAAGCCAGCGGT 58.986 39.130 0.00 0.00 0.00 5.68
121 122 4.461081 TGACAATTAATAAAGCCAGCGGTT 59.539 37.500 0.00 0.00 0.00 4.44
122 123 5.047660 TGACAATTAATAAAGCCAGCGGTTT 60.048 36.000 0.00 0.00 42.24 3.27
123 124 5.407502 ACAATTAATAAAGCCAGCGGTTTC 58.592 37.500 0.00 0.00 40.16 2.78
124 125 5.185056 ACAATTAATAAAGCCAGCGGTTTCT 59.815 36.000 0.00 0.00 40.16 2.52
125 126 5.914898 ATTAATAAAGCCAGCGGTTTCTT 57.085 34.783 0.00 0.00 40.16 2.52
126 127 7.094118 ACAATTAATAAAGCCAGCGGTTTCTTA 60.094 33.333 0.00 0.00 40.16 2.10
127 128 4.965119 AATAAAGCCAGCGGTTTCTTAG 57.035 40.909 0.00 0.00 40.16 2.18
128 129 2.271944 AAAGCCAGCGGTTTCTTAGT 57.728 45.000 0.00 0.00 34.65 2.24
129 130 2.271944 AAGCCAGCGGTTTCTTAGTT 57.728 45.000 0.00 0.00 0.00 2.24
130 131 1.809684 AGCCAGCGGTTTCTTAGTTC 58.190 50.000 0.00 0.00 0.00 3.01
131 132 1.348036 AGCCAGCGGTTTCTTAGTTCT 59.652 47.619 0.00 0.00 0.00 3.01
132 133 1.464997 GCCAGCGGTTTCTTAGTTCTG 59.535 52.381 0.00 0.00 0.00 3.02
133 134 1.464997 CCAGCGGTTTCTTAGTTCTGC 59.535 52.381 0.00 0.00 0.00 4.26
134 135 2.143122 CAGCGGTTTCTTAGTTCTGCA 58.857 47.619 0.00 0.00 35.01 4.41
135 136 2.744202 CAGCGGTTTCTTAGTTCTGCAT 59.256 45.455 0.00 0.00 35.01 3.96
136 137 3.003480 AGCGGTTTCTTAGTTCTGCATC 58.997 45.455 0.00 0.00 35.01 3.91
137 138 3.003480 GCGGTTTCTTAGTTCTGCATCT 58.997 45.455 0.00 0.00 33.09 2.90
138 139 3.181516 GCGGTTTCTTAGTTCTGCATCTG 60.182 47.826 0.00 0.00 33.09 2.90
139 140 3.372206 CGGTTTCTTAGTTCTGCATCTGG 59.628 47.826 0.00 0.00 0.00 3.86
140 141 4.327680 GGTTTCTTAGTTCTGCATCTGGT 58.672 43.478 0.00 0.00 0.00 4.00
141 142 4.762251 GGTTTCTTAGTTCTGCATCTGGTT 59.238 41.667 0.00 0.00 0.00 3.67
142 143 5.938125 GGTTTCTTAGTTCTGCATCTGGTTA 59.062 40.000 0.00 0.00 0.00 2.85
143 144 6.128254 GGTTTCTTAGTTCTGCATCTGGTTAC 60.128 42.308 0.00 0.00 0.00 2.50
144 145 5.738619 TCTTAGTTCTGCATCTGGTTACA 57.261 39.130 0.00 0.00 0.00 2.41
145 146 6.109156 TCTTAGTTCTGCATCTGGTTACAA 57.891 37.500 0.00 0.00 0.00 2.41
146 147 6.530120 TCTTAGTTCTGCATCTGGTTACAAA 58.470 36.000 0.00 0.00 0.00 2.83
147 148 7.168219 TCTTAGTTCTGCATCTGGTTACAAAT 58.832 34.615 0.00 0.00 0.00 2.32
148 149 7.665559 TCTTAGTTCTGCATCTGGTTACAAATT 59.334 33.333 0.00 0.00 0.00 1.82
149 150 6.259550 AGTTCTGCATCTGGTTACAAATTC 57.740 37.500 0.00 0.00 0.00 2.17
150 151 4.944962 TCTGCATCTGGTTACAAATTCG 57.055 40.909 0.00 0.00 0.00 3.34
151 152 3.689161 TCTGCATCTGGTTACAAATTCGG 59.311 43.478 0.00 0.00 0.00 4.30
152 153 3.417101 TGCATCTGGTTACAAATTCGGT 58.583 40.909 0.00 0.00 0.00 4.69
153 154 3.823873 TGCATCTGGTTACAAATTCGGTT 59.176 39.130 0.00 0.00 0.00 4.44
154 155 4.165779 GCATCTGGTTACAAATTCGGTTG 58.834 43.478 0.00 0.00 34.52 3.77
155 156 4.320935 GCATCTGGTTACAAATTCGGTTGT 60.321 41.667 5.58 5.58 43.95 3.32
156 157 5.106475 GCATCTGGTTACAAATTCGGTTGTA 60.106 40.000 3.97 3.97 41.84 2.41
157 158 6.542852 CATCTGGTTACAAATTCGGTTGTAG 58.457 40.000 7.14 0.58 43.11 2.74
158 159 5.856156 TCTGGTTACAAATTCGGTTGTAGA 58.144 37.500 7.14 2.38 43.11 2.59
159 160 6.469410 TCTGGTTACAAATTCGGTTGTAGAT 58.531 36.000 7.14 0.00 43.11 1.98
160 161 6.592607 TCTGGTTACAAATTCGGTTGTAGATC 59.407 38.462 7.14 0.00 43.11 2.75
161 162 6.231951 TGGTTACAAATTCGGTTGTAGATCA 58.768 36.000 0.00 5.57 43.11 2.92
162 163 6.148150 TGGTTACAAATTCGGTTGTAGATCAC 59.852 38.462 0.00 0.00 43.11 3.06
163 164 4.921470 ACAAATTCGGTTGTAGATCACG 57.079 40.909 0.00 0.00 39.94 4.35
164 165 3.124636 ACAAATTCGGTTGTAGATCACGC 59.875 43.478 0.00 0.00 39.94 5.34
165 166 2.665649 ATTCGGTTGTAGATCACGCA 57.334 45.000 0.00 0.00 0.00 5.24
166 167 2.442212 TTCGGTTGTAGATCACGCAA 57.558 45.000 0.00 0.00 0.00 4.85
167 168 1.705256 TCGGTTGTAGATCACGCAAC 58.295 50.000 14.60 14.60 41.02 4.17
170 171 1.705256 GTTGTAGATCACGCAACCGA 58.295 50.000 12.90 0.00 37.20 4.69
171 172 2.063266 GTTGTAGATCACGCAACCGAA 58.937 47.619 12.90 0.00 37.20 4.30
172 173 2.665649 TGTAGATCACGCAACCGAAT 57.334 45.000 0.00 0.00 38.29 3.34
173 174 2.967362 TGTAGATCACGCAACCGAATT 58.033 42.857 0.00 0.00 38.29 2.17
174 175 3.331150 TGTAGATCACGCAACCGAATTT 58.669 40.909 0.00 0.00 38.29 1.82
175 176 3.749088 TGTAGATCACGCAACCGAATTTT 59.251 39.130 0.00 0.00 38.29 1.82
176 177 4.930405 TGTAGATCACGCAACCGAATTTTA 59.070 37.500 0.00 0.00 38.29 1.52
177 178 4.336532 AGATCACGCAACCGAATTTTAC 57.663 40.909 0.00 0.00 38.29 2.01
178 179 4.000988 AGATCACGCAACCGAATTTTACT 58.999 39.130 0.00 0.00 38.29 2.24
179 180 5.172934 AGATCACGCAACCGAATTTTACTA 58.827 37.500 0.00 0.00 38.29 1.82
180 181 4.914312 TCACGCAACCGAATTTTACTAG 57.086 40.909 0.00 0.00 38.29 2.57
181 182 4.309099 TCACGCAACCGAATTTTACTAGT 58.691 39.130 0.00 0.00 38.29 2.57
182 183 4.751098 TCACGCAACCGAATTTTACTAGTT 59.249 37.500 0.00 0.00 38.29 2.24
183 184 5.077424 CACGCAACCGAATTTTACTAGTTC 58.923 41.667 0.00 0.00 38.29 3.01
189 190 5.243207 ACCGAATTTTACTAGTTCCACCTG 58.757 41.667 0.00 0.00 0.00 4.00
231 240 3.057736 GCATCGGAATCATGGAATTGGAG 60.058 47.826 0.00 0.00 0.00 3.86
250 259 4.274950 TGGAGTCAAAATCCAGACGTTTTC 59.725 41.667 0.00 0.00 41.96 2.29
265 274 1.136057 GTTTTCTTGTTCGGCCGCTAG 60.136 52.381 23.51 14.02 0.00 3.42
309 319 2.124151 CCCCAAATCTCAGCCCCG 60.124 66.667 0.00 0.00 0.00 5.73
423 440 0.337082 TCATCACCTTCCCGACCCTA 59.663 55.000 0.00 0.00 0.00 3.53
649 678 1.698506 CTCCAGGTATCGAGCCTCTT 58.301 55.000 8.21 0.00 33.31 2.85
650 679 2.035632 CTCCAGGTATCGAGCCTCTTT 58.964 52.381 8.21 0.00 33.31 2.52
651 680 2.432510 CTCCAGGTATCGAGCCTCTTTT 59.567 50.000 8.21 0.00 33.31 2.27
678 719 0.250252 TTCCGGTTTGACCCCGTTAC 60.250 55.000 0.00 0.00 43.98 2.50
679 720 1.672030 CCGGTTTGACCCCGTTACC 60.672 63.158 0.00 0.00 43.98 2.85
680 721 2.028733 CGGTTTGACCCCGTTACCG 61.029 63.158 0.00 0.00 44.67 4.02
693 734 2.388121 CGTTACCGGTTAATAGAGGCG 58.612 52.381 15.04 0.00 0.00 5.52
694 735 2.223572 CGTTACCGGTTAATAGAGGCGT 60.224 50.000 15.04 0.00 0.00 5.68
695 736 3.734902 CGTTACCGGTTAATAGAGGCGTT 60.735 47.826 15.04 0.00 0.00 4.84
696 737 2.591571 ACCGGTTAATAGAGGCGTTC 57.408 50.000 0.00 0.00 0.00 3.95
697 738 1.137675 ACCGGTTAATAGAGGCGTTCC 59.862 52.381 0.00 0.00 0.00 3.62
698 739 1.484356 CGGTTAATAGAGGCGTTCCG 58.516 55.000 0.00 0.00 37.47 4.30
699 740 1.202336 CGGTTAATAGAGGCGTTCCGT 60.202 52.381 0.00 0.00 37.47 4.69
700 741 2.736400 CGGTTAATAGAGGCGTTCCGTT 60.736 50.000 0.00 0.00 37.47 4.44
701 742 2.606272 GGTTAATAGAGGCGTTCCGTTG 59.394 50.000 0.00 0.00 37.47 4.10
702 743 3.514645 GTTAATAGAGGCGTTCCGTTGA 58.485 45.455 0.00 0.00 37.47 3.18
703 744 2.981859 AATAGAGGCGTTCCGTTGAT 57.018 45.000 0.00 0.00 37.47 2.57
704 745 2.981859 ATAGAGGCGTTCCGTTGATT 57.018 45.000 0.00 0.00 37.47 2.57
705 746 2.754946 TAGAGGCGTTCCGTTGATTT 57.245 45.000 0.00 0.00 37.47 2.17
716 757 6.288419 CGTTCCGTTGATTTAAGCAATTTTG 58.712 36.000 0.00 0.00 0.00 2.44
957 1011 0.540923 CTTCTCCCAGGCTCCAGAAG 59.459 60.000 10.63 10.63 36.82 2.85
975 1030 0.955919 AGCTTGTTTGGCCGTCTAGC 60.956 55.000 15.69 15.69 0.00 3.42
1059 1114 2.908015 GCCATCTCCACCGCCTTA 59.092 61.111 0.00 0.00 0.00 2.69
1102 1157 3.394836 GCCCTTCTCCCTCGCACT 61.395 66.667 0.00 0.00 0.00 4.40
1113 1169 1.078918 CTCGCACTCATCCCTTGCA 60.079 57.895 0.00 0.00 35.93 4.08
1209 1281 2.357034 CACCAGGTTCGTCCGGTG 60.357 66.667 18.77 18.77 45.99 4.94
1239 1313 2.127232 GTTGTTTGGAGCGCGCTC 60.127 61.111 44.84 44.84 42.04 5.03
1283 1357 1.174712 ATGTGTGTGGTTCTGCTGCC 61.175 55.000 0.00 0.00 0.00 4.85
1297 1371 4.693532 TGCCTACGCAGGAAGTTG 57.306 55.556 5.66 0.00 45.91 3.16
1437 1511 3.118186 CGGGGGATAACTTGGTAATGTCA 60.118 47.826 0.00 0.00 0.00 3.58
1438 1512 4.461198 GGGGGATAACTTGGTAATGTCAG 58.539 47.826 0.00 0.00 0.00 3.51
1439 1513 3.883489 GGGGATAACTTGGTAATGTCAGC 59.117 47.826 0.00 0.00 0.00 4.26
1440 1514 4.523083 GGGATAACTTGGTAATGTCAGCA 58.477 43.478 0.00 0.00 0.00 4.41
1441 1515 4.576463 GGGATAACTTGGTAATGTCAGCAG 59.424 45.833 0.00 0.00 0.00 4.24
1442 1516 4.035675 GGATAACTTGGTAATGTCAGCAGC 59.964 45.833 0.00 0.00 0.00 5.25
1443 1517 2.566833 ACTTGGTAATGTCAGCAGCA 57.433 45.000 0.00 0.00 0.00 4.41
1444 1518 3.077484 ACTTGGTAATGTCAGCAGCAT 57.923 42.857 0.00 0.00 0.00 3.79
1445 1519 3.012518 ACTTGGTAATGTCAGCAGCATC 58.987 45.455 0.00 0.00 0.00 3.91
1446 1520 2.042686 TGGTAATGTCAGCAGCATCC 57.957 50.000 0.00 0.00 0.00 3.51
1447 1521 1.561076 TGGTAATGTCAGCAGCATCCT 59.439 47.619 0.00 0.00 0.00 3.24
1448 1522 1.945394 GGTAATGTCAGCAGCATCCTG 59.055 52.381 0.00 0.00 42.13 3.86
1449 1523 1.945394 GTAATGTCAGCAGCATCCTGG 59.055 52.381 0.00 0.00 39.54 4.45
1451 1525 0.107312 ATGTCAGCAGCATCCTGGTC 60.107 55.000 0.00 0.00 46.22 4.02
1460 1534 0.107945 GCATCCTGGTCCACTCTGTC 60.108 60.000 0.00 0.00 0.00 3.51
1483 1565 7.344352 TGTCAATAGCTTGGCCCTATAAATTTT 59.656 33.333 0.00 0.00 36.09 1.82
1485 1567 7.344352 TCAATAGCTTGGCCCTATAAATTTTGT 59.656 33.333 0.00 0.00 32.95 2.83
1492 1574 8.785329 TTGGCCCTATAAATTTTGTTTCATTC 57.215 30.769 0.00 0.00 0.00 2.67
1515 1693 3.093814 TCTGCTTCATGTGCATTGGATT 58.906 40.909 14.33 0.00 39.86 3.01
1641 1831 2.031163 GAGTTGGCTGGTCTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
2014 2224 7.319646 TGGAATTATGGTTCAACAGTTAATGC 58.680 34.615 0.00 0.00 0.00 3.56
2053 2263 0.895100 TTGGGCTACCTTTGCAGCTG 60.895 55.000 10.11 10.11 37.91 4.24
2059 2269 3.596214 GCTACCTTTGCAGCTGTACTTA 58.404 45.455 16.64 0.00 34.86 2.24
2078 2288 4.929808 ACTTAGCAAACATACGTCTCAAGG 59.070 41.667 0.00 0.00 0.00 3.61
2138 2771 4.627467 CGCTGTTGATAAAGTAAGCTGAGT 59.373 41.667 0.00 0.00 0.00 3.41
2142 2775 7.412020 GCTGTTGATAAAGTAAGCTGAGTACAC 60.412 40.741 0.00 0.00 0.00 2.90
2315 3037 9.413048 GATGTGCTTAGGAGAACTATGTATTAC 57.587 37.037 0.00 0.00 32.14 1.89
2316 3038 8.534954 TGTGCTTAGGAGAACTATGTATTACT 57.465 34.615 0.00 0.00 32.14 2.24
2317 3039 8.630917 TGTGCTTAGGAGAACTATGTATTACTC 58.369 37.037 0.00 0.00 32.14 2.59
2318 3040 8.083462 GTGCTTAGGAGAACTATGTATTACTCC 58.917 40.741 0.00 0.00 42.64 3.85
2319 3041 7.232941 TGCTTAGGAGAACTATGTATTACTCCC 59.767 40.741 0.00 0.00 43.12 4.30
2320 3042 7.452189 GCTTAGGAGAACTATGTATTACTCCCT 59.548 40.741 0.00 0.00 43.12 4.20
2321 3043 8.937207 TTAGGAGAACTATGTATTACTCCCTC 57.063 38.462 0.00 0.00 43.12 4.30
2322 3044 7.169287 AGGAGAACTATGTATTACTCCCTCT 57.831 40.000 0.00 0.00 43.12 3.69
2323 3045 7.007723 AGGAGAACTATGTATTACTCCCTCTG 58.992 42.308 0.00 0.00 43.12 3.35
2324 3046 6.778559 GGAGAACTATGTATTACTCCCTCTGT 59.221 42.308 0.00 0.00 38.23 3.41
2325 3047 7.040271 GGAGAACTATGTATTACTCCCTCTGTC 60.040 44.444 0.00 0.00 38.23 3.51
2326 3048 6.778559 AGAACTATGTATTACTCCCTCTGTCC 59.221 42.308 0.00 0.00 0.00 4.02
2327 3049 5.395611 ACTATGTATTACTCCCTCTGTCCC 58.604 45.833 0.00 0.00 0.00 4.46
2328 3050 3.769189 TGTATTACTCCCTCTGTCCCA 57.231 47.619 0.00 0.00 0.00 4.37
2329 3051 3.371965 TGTATTACTCCCTCTGTCCCAC 58.628 50.000 0.00 0.00 0.00 4.61
2330 3052 2.642171 ATTACTCCCTCTGTCCCACA 57.358 50.000 0.00 0.00 0.00 4.17
2331 3053 2.409064 TTACTCCCTCTGTCCCACAA 57.591 50.000 0.00 0.00 0.00 3.33
2332 3054 2.642171 TACTCCCTCTGTCCCACAAT 57.358 50.000 0.00 0.00 0.00 2.71
2333 3055 0.987294 ACTCCCTCTGTCCCACAATG 59.013 55.000 0.00 0.00 0.00 2.82
2334 3056 0.987294 CTCCCTCTGTCCCACAATGT 59.013 55.000 0.00 0.00 0.00 2.71
2335 3057 2.187958 CTCCCTCTGTCCCACAATGTA 58.812 52.381 0.00 0.00 0.00 2.29
2336 3058 2.571653 CTCCCTCTGTCCCACAATGTAA 59.428 50.000 0.00 0.00 0.00 2.41
2337 3059 2.571653 TCCCTCTGTCCCACAATGTAAG 59.428 50.000 0.00 0.00 0.00 2.34
2338 3060 2.571653 CCCTCTGTCCCACAATGTAAGA 59.428 50.000 0.00 0.00 0.00 2.10
2339 3061 3.600388 CCTCTGTCCCACAATGTAAGAC 58.400 50.000 7.72 7.72 0.00 3.01
2340 3062 3.254060 CTCTGTCCCACAATGTAAGACG 58.746 50.000 9.46 5.84 0.00 4.18
2341 3063 1.732259 CTGTCCCACAATGTAAGACGC 59.268 52.381 9.46 0.00 0.00 5.19
2342 3064 1.346395 TGTCCCACAATGTAAGACGCT 59.654 47.619 9.46 0.00 0.00 5.07
2343 3065 2.224426 TGTCCCACAATGTAAGACGCTT 60.224 45.455 9.46 0.00 0.00 4.68
2344 3066 2.812011 GTCCCACAATGTAAGACGCTTT 59.188 45.455 0.19 0.00 0.00 3.51
2345 3067 3.252458 GTCCCACAATGTAAGACGCTTTT 59.748 43.478 0.19 0.00 0.00 2.27
2346 3068 3.252215 TCCCACAATGTAAGACGCTTTTG 59.748 43.478 0.00 0.72 0.00 2.44
2347 3069 2.979813 CCACAATGTAAGACGCTTTTGC 59.020 45.455 0.00 0.00 43.23 3.68
2384 3106 5.811399 TCCAAAAGCGTCTTATATTGTGG 57.189 39.130 0.00 0.00 0.00 4.17
2385 3107 4.638421 TCCAAAAGCGTCTTATATTGTGGG 59.362 41.667 0.00 0.00 0.00 4.61
2386 3108 4.638421 CCAAAAGCGTCTTATATTGTGGGA 59.362 41.667 0.00 0.00 0.00 4.37
2387 3109 5.448632 CCAAAAGCGTCTTATATTGTGGGAC 60.449 44.000 0.00 0.00 0.00 4.46
2389 3111 2.132762 GCGTCTTATATTGTGGGACGG 58.867 52.381 14.00 0.00 46.26 4.79
2390 3112 2.223876 GCGTCTTATATTGTGGGACGGA 60.224 50.000 14.00 0.00 46.26 4.69
2391 3113 3.639538 CGTCTTATATTGTGGGACGGAG 58.360 50.000 0.00 0.00 43.69 4.63
2392 3114 3.552273 CGTCTTATATTGTGGGACGGAGG 60.552 52.174 0.00 0.00 43.69 4.30
2393 3115 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2394 3116 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2395 3117 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2396 3118 0.042131 TATTGTGGGACGGAGGGAGT 59.958 55.000 0.00 0.00 0.00 3.85
2397 3119 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
2653 3384 6.418057 TGGTCAATGGCAGAACTAAAATTT 57.582 33.333 0.00 0.00 0.00 1.82
2709 3441 2.743928 GTTGTGCTCAGGCCCTCG 60.744 66.667 0.00 0.00 37.74 4.63
2990 3733 7.167924 TGTTGATGCCTTGATTTTTATGCTA 57.832 32.000 0.00 0.00 0.00 3.49
2992 3735 8.093307 TGTTGATGCCTTGATTTTTATGCTAAA 58.907 29.630 0.00 0.00 0.00 1.85
3010 3753 7.680442 TGCTAAAGTATTATGTTTGTGCTGA 57.320 32.000 0.00 0.00 0.00 4.26
3148 3895 1.471119 CAGGATGCTTGCCAATGTCT 58.529 50.000 0.00 0.00 0.00 3.41
3225 3972 0.741221 GGCAGCGGTTGAAGTAGAGG 60.741 60.000 0.00 0.00 0.00 3.69
3226 3973 0.741221 GCAGCGGTTGAAGTAGAGGG 60.741 60.000 0.00 0.00 0.00 4.30
3227 3974 0.895530 CAGCGGTTGAAGTAGAGGGA 59.104 55.000 0.00 0.00 0.00 4.20
3277 4024 4.624015 GATTCAATCGAATACGGGTACCA 58.376 43.478 15.35 0.00 46.27 3.25
3380 4127 4.299547 ACGGCTCAGCGTGCAAGA 62.300 61.111 2.99 0.00 0.00 3.02
3450 4197 1.847328 TGGAGCAGAATACGAGGACA 58.153 50.000 0.00 0.00 0.00 4.02
3456 4203 2.101582 GCAGAATACGAGGACAGACCAT 59.898 50.000 0.00 0.00 42.04 3.55
3821 4568 3.120060 CGGAGATTGCAAAGGTGAAAGAG 60.120 47.826 1.71 0.00 0.00 2.85
3851 4598 0.902531 AGGCTAAAGCGGACTTAGCA 59.097 50.000 17.73 0.00 43.26 3.49
3880 4627 1.409064 CGCTAGGATGGCTACAGAACA 59.591 52.381 0.00 0.00 42.26 3.18
4172 4919 2.619177 CAACCCGTTGGACAACATTGTA 59.381 45.455 14.74 0.00 42.43 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.265904 GGCCAAAGACGGGAACACC 61.266 63.158 0.00 0.00 0.00 4.16
34 35 0.893727 ATGGCCAAAGACGGGAACAC 60.894 55.000 10.96 0.00 0.00 3.32
35 36 0.893270 CATGGCCAAAGACGGGAACA 60.893 55.000 10.96 0.00 0.00 3.18
36 37 1.883021 CATGGCCAAAGACGGGAAC 59.117 57.895 10.96 0.00 0.00 3.62
37 38 1.976474 GCATGGCCAAAGACGGGAA 60.976 57.895 10.96 0.00 0.00 3.97
38 39 2.361104 GCATGGCCAAAGACGGGA 60.361 61.111 10.96 0.00 0.00 5.14
39 40 3.814268 CGCATGGCCAAAGACGGG 61.814 66.667 10.96 0.44 0.00 5.28
40 41 4.481112 GCGCATGGCCAAAGACGG 62.481 66.667 10.96 0.00 34.80 4.79
41 42 3.434319 AGCGCATGGCCAAAGACG 61.434 61.111 10.96 12.77 45.17 4.18
42 43 2.180017 CAGCGCATGGCCAAAGAC 59.820 61.111 10.96 0.00 45.17 3.01
43 44 3.751246 GCAGCGCATGGCCAAAGA 61.751 61.111 10.96 0.00 45.17 2.52
57 58 1.421485 GTCAGTCAATTCCGCGCAG 59.579 57.895 8.75 0.00 0.00 5.18
58 59 2.379634 CGTCAGTCAATTCCGCGCA 61.380 57.895 8.75 0.00 0.00 6.09
59 60 2.395690 CGTCAGTCAATTCCGCGC 59.604 61.111 0.00 0.00 0.00 6.86
60 61 2.395690 GCGTCAGTCAATTCCGCG 59.604 61.111 0.00 0.00 34.66 6.46
61 62 1.696832 GAGGCGTCAGTCAATTCCGC 61.697 60.000 0.52 0.00 43.35 5.54
62 63 0.389817 TGAGGCGTCAGTCAATTCCG 60.390 55.000 4.68 0.00 0.00 4.30
63 64 1.808411 TTGAGGCGTCAGTCAATTCC 58.192 50.000 9.34 0.00 32.98 3.01
64 65 3.003275 TGTTTTGAGGCGTCAGTCAATTC 59.997 43.478 9.34 0.12 32.79 2.17
65 66 2.948979 TGTTTTGAGGCGTCAGTCAATT 59.051 40.909 9.34 0.00 32.79 2.32
66 67 2.571212 TGTTTTGAGGCGTCAGTCAAT 58.429 42.857 9.34 0.00 32.79 2.57
67 68 2.031258 TGTTTTGAGGCGTCAGTCAA 57.969 45.000 9.34 0.00 32.98 3.18
68 69 2.254546 ATGTTTTGAGGCGTCAGTCA 57.745 45.000 9.34 10.20 32.98 3.41
69 70 2.095718 GGAATGTTTTGAGGCGTCAGTC 60.096 50.000 9.34 5.15 32.98 3.51
70 71 1.880027 GGAATGTTTTGAGGCGTCAGT 59.120 47.619 9.34 0.00 32.98 3.41
71 72 1.879380 TGGAATGTTTTGAGGCGTCAG 59.121 47.619 9.34 0.00 32.98 3.51
72 73 1.879380 CTGGAATGTTTTGAGGCGTCA 59.121 47.619 4.68 4.68 0.00 4.35
73 74 1.200020 CCTGGAATGTTTTGAGGCGTC 59.800 52.381 0.00 0.00 0.00 5.19
74 75 1.247567 CCTGGAATGTTTTGAGGCGT 58.752 50.000 0.00 0.00 0.00 5.68
75 76 0.109132 GCCTGGAATGTTTTGAGGCG 60.109 55.000 0.00 0.00 39.91 5.52
76 77 0.109132 CGCCTGGAATGTTTTGAGGC 60.109 55.000 0.00 0.00 44.91 4.70
77 78 1.200020 GACGCCTGGAATGTTTTGAGG 59.800 52.381 0.00 0.00 0.00 3.86
78 79 2.095567 CAGACGCCTGGAATGTTTTGAG 60.096 50.000 0.00 0.00 36.77 3.02
79 80 1.879380 CAGACGCCTGGAATGTTTTGA 59.121 47.619 0.00 0.00 36.77 2.69
80 81 1.879380 TCAGACGCCTGGAATGTTTTG 59.121 47.619 0.00 0.00 40.76 2.44
81 82 1.880027 GTCAGACGCCTGGAATGTTTT 59.120 47.619 0.00 0.00 40.76 2.43
82 83 1.202758 TGTCAGACGCCTGGAATGTTT 60.203 47.619 0.00 0.00 40.76 2.83
83 84 0.396435 TGTCAGACGCCTGGAATGTT 59.604 50.000 0.00 0.00 40.76 2.71
84 85 0.396435 TTGTCAGACGCCTGGAATGT 59.604 50.000 0.00 0.00 40.76 2.71
85 86 1.742761 ATTGTCAGACGCCTGGAATG 58.257 50.000 0.00 0.00 40.76 2.67
86 87 2.496899 AATTGTCAGACGCCTGGAAT 57.503 45.000 0.00 0.00 40.76 3.01
87 88 3.410631 TTAATTGTCAGACGCCTGGAA 57.589 42.857 0.00 0.00 40.76 3.53
88 89 3.627395 ATTAATTGTCAGACGCCTGGA 57.373 42.857 0.00 0.00 40.76 3.86
89 90 5.730568 GCTTTATTAATTGTCAGACGCCTGG 60.731 44.000 0.00 0.00 40.76 4.45
90 91 5.266242 GCTTTATTAATTGTCAGACGCCTG 58.734 41.667 0.00 0.00 41.74 4.85
91 92 4.335594 GGCTTTATTAATTGTCAGACGCCT 59.664 41.667 0.00 0.00 0.00 5.52
92 93 4.095782 TGGCTTTATTAATTGTCAGACGCC 59.904 41.667 0.00 0.00 0.00 5.68
93 94 5.229921 TGGCTTTATTAATTGTCAGACGC 57.770 39.130 0.00 0.00 0.00 5.19
94 95 5.266242 GCTGGCTTTATTAATTGTCAGACG 58.734 41.667 16.36 0.00 0.00 4.18
95 96 5.266242 CGCTGGCTTTATTAATTGTCAGAC 58.734 41.667 16.36 0.00 0.00 3.51
96 97 4.335315 CCGCTGGCTTTATTAATTGTCAGA 59.665 41.667 16.36 0.00 0.00 3.27
97 98 4.096382 ACCGCTGGCTTTATTAATTGTCAG 59.904 41.667 10.89 10.89 0.00 3.51
98 99 4.013728 ACCGCTGGCTTTATTAATTGTCA 58.986 39.130 0.00 0.00 0.00 3.58
99 100 4.632538 ACCGCTGGCTTTATTAATTGTC 57.367 40.909 0.00 0.00 0.00 3.18
100 101 5.185056 AGAAACCGCTGGCTTTATTAATTGT 59.815 36.000 0.00 0.00 0.00 2.71
101 102 5.650543 AGAAACCGCTGGCTTTATTAATTG 58.349 37.500 0.00 0.00 0.00 2.32
102 103 5.914898 AGAAACCGCTGGCTTTATTAATT 57.085 34.783 0.00 0.00 0.00 1.40
103 104 5.914898 AAGAAACCGCTGGCTTTATTAAT 57.085 34.783 0.00 0.00 0.00 1.40
104 105 5.941647 ACTAAGAAACCGCTGGCTTTATTAA 59.058 36.000 0.00 0.00 0.00 1.40
105 106 5.493809 ACTAAGAAACCGCTGGCTTTATTA 58.506 37.500 0.00 3.45 0.00 0.98
106 107 4.332828 ACTAAGAAACCGCTGGCTTTATT 58.667 39.130 0.00 2.65 0.00 1.40
107 108 3.951663 ACTAAGAAACCGCTGGCTTTAT 58.048 40.909 0.00 0.00 0.00 1.40
108 109 3.412237 ACTAAGAAACCGCTGGCTTTA 57.588 42.857 0.00 0.00 0.00 1.85
109 110 2.271944 ACTAAGAAACCGCTGGCTTT 57.728 45.000 0.00 0.00 0.00 3.51
110 111 2.152016 GAACTAAGAAACCGCTGGCTT 58.848 47.619 0.00 0.00 0.00 4.35
111 112 1.348036 AGAACTAAGAAACCGCTGGCT 59.652 47.619 0.00 0.00 0.00 4.75
112 113 1.464997 CAGAACTAAGAAACCGCTGGC 59.535 52.381 0.00 0.00 0.00 4.85
113 114 1.464997 GCAGAACTAAGAAACCGCTGG 59.535 52.381 0.00 0.00 0.00 4.85
114 115 2.143122 TGCAGAACTAAGAAACCGCTG 58.857 47.619 0.00 0.00 0.00 5.18
115 116 2.543777 TGCAGAACTAAGAAACCGCT 57.456 45.000 0.00 0.00 0.00 5.52
116 117 3.003480 AGATGCAGAACTAAGAAACCGC 58.997 45.455 0.00 0.00 0.00 5.68
117 118 3.372206 CCAGATGCAGAACTAAGAAACCG 59.628 47.826 0.00 0.00 0.00 4.44
118 119 4.327680 ACCAGATGCAGAACTAAGAAACC 58.672 43.478 0.00 0.00 0.00 3.27
119 120 5.948992 AACCAGATGCAGAACTAAGAAAC 57.051 39.130 0.00 0.00 0.00 2.78
120 121 6.530120 TGTAACCAGATGCAGAACTAAGAAA 58.470 36.000 0.00 0.00 0.00 2.52
121 122 6.109156 TGTAACCAGATGCAGAACTAAGAA 57.891 37.500 0.00 0.00 0.00 2.52
122 123 5.738619 TGTAACCAGATGCAGAACTAAGA 57.261 39.130 0.00 0.00 0.00 2.10
123 124 6.801539 TTTGTAACCAGATGCAGAACTAAG 57.198 37.500 0.00 0.00 0.00 2.18
124 125 7.360861 CGAATTTGTAACCAGATGCAGAACTAA 60.361 37.037 0.00 0.00 0.00 2.24
125 126 6.092122 CGAATTTGTAACCAGATGCAGAACTA 59.908 38.462 0.00 0.00 0.00 2.24
126 127 5.106555 CGAATTTGTAACCAGATGCAGAACT 60.107 40.000 0.00 0.00 0.00 3.01
127 128 5.088739 CGAATTTGTAACCAGATGCAGAAC 58.911 41.667 0.00 0.00 0.00 3.01
128 129 4.155826 CCGAATTTGTAACCAGATGCAGAA 59.844 41.667 0.00 0.00 0.00 3.02
129 130 3.689161 CCGAATTTGTAACCAGATGCAGA 59.311 43.478 0.00 0.00 0.00 4.26
130 131 3.440173 ACCGAATTTGTAACCAGATGCAG 59.560 43.478 0.00 0.00 0.00 4.41
131 132 3.417101 ACCGAATTTGTAACCAGATGCA 58.583 40.909 0.00 0.00 0.00 3.96
132 133 4.165779 CAACCGAATTTGTAACCAGATGC 58.834 43.478 0.00 0.00 0.00 3.91
133 134 5.371115 ACAACCGAATTTGTAACCAGATG 57.629 39.130 0.00 0.00 37.96 2.90
134 135 6.469410 TCTACAACCGAATTTGTAACCAGAT 58.531 36.000 5.95 0.00 40.59 2.90
135 136 5.856156 TCTACAACCGAATTTGTAACCAGA 58.144 37.500 5.95 0.60 40.59 3.86
136 137 6.370442 TGATCTACAACCGAATTTGTAACCAG 59.630 38.462 0.00 0.00 40.59 4.00
137 138 6.148150 GTGATCTACAACCGAATTTGTAACCA 59.852 38.462 0.00 2.93 40.59 3.67
138 139 6.540205 GTGATCTACAACCGAATTTGTAACC 58.460 40.000 0.00 1.11 40.59 2.85
139 140 6.238508 CGTGATCTACAACCGAATTTGTAAC 58.761 40.000 0.00 2.07 40.59 2.50
140 141 5.163933 GCGTGATCTACAACCGAATTTGTAA 60.164 40.000 0.00 0.41 40.59 2.41
141 142 4.327898 GCGTGATCTACAACCGAATTTGTA 59.672 41.667 0.00 4.75 40.29 2.41
142 143 3.124636 GCGTGATCTACAACCGAATTTGT 59.875 43.478 0.00 3.11 42.46 2.83
143 144 3.124466 TGCGTGATCTACAACCGAATTTG 59.876 43.478 0.00 0.00 0.00 2.32
144 145 3.331150 TGCGTGATCTACAACCGAATTT 58.669 40.909 0.00 0.00 0.00 1.82
145 146 2.967362 TGCGTGATCTACAACCGAATT 58.033 42.857 0.00 0.00 0.00 2.17
146 147 2.665649 TGCGTGATCTACAACCGAAT 57.334 45.000 0.00 0.00 0.00 3.34
147 148 2.063266 GTTGCGTGATCTACAACCGAA 58.937 47.619 12.31 0.00 38.15 4.30
148 149 1.705256 GTTGCGTGATCTACAACCGA 58.295 50.000 12.31 0.00 38.15 4.69
151 152 1.705256 TCGGTTGCGTGATCTACAAC 58.295 50.000 14.05 14.05 42.28 3.32
152 153 2.442212 TTCGGTTGCGTGATCTACAA 57.558 45.000 0.00 0.00 0.00 2.41
153 154 2.665649 ATTCGGTTGCGTGATCTACA 57.334 45.000 0.00 0.00 0.00 2.74
154 155 4.336532 AAAATTCGGTTGCGTGATCTAC 57.663 40.909 0.00 0.00 0.00 2.59
155 156 5.172934 AGTAAAATTCGGTTGCGTGATCTA 58.827 37.500 0.00 0.00 0.00 1.98
156 157 4.000988 AGTAAAATTCGGTTGCGTGATCT 58.999 39.130 0.00 0.00 0.00 2.75
157 158 4.336532 AGTAAAATTCGGTTGCGTGATC 57.663 40.909 0.00 0.00 0.00 2.92
158 159 4.933400 ACTAGTAAAATTCGGTTGCGTGAT 59.067 37.500 0.00 0.00 0.00 3.06
159 160 4.309099 ACTAGTAAAATTCGGTTGCGTGA 58.691 39.130 0.00 0.00 0.00 4.35
160 161 4.657075 ACTAGTAAAATTCGGTTGCGTG 57.343 40.909 0.00 0.00 0.00 5.34
161 162 4.152938 GGAACTAGTAAAATTCGGTTGCGT 59.847 41.667 0.00 0.00 0.00 5.24
162 163 4.152759 TGGAACTAGTAAAATTCGGTTGCG 59.847 41.667 0.00 0.00 0.00 4.85
163 164 5.388111 GTGGAACTAGTAAAATTCGGTTGC 58.612 41.667 0.00 0.00 0.00 4.17
164 165 5.704053 AGGTGGAACTAGTAAAATTCGGTTG 59.296 40.000 0.00 0.00 36.74 3.77
165 166 5.704053 CAGGTGGAACTAGTAAAATTCGGTT 59.296 40.000 0.00 0.00 36.74 4.44
166 167 5.243207 CAGGTGGAACTAGTAAAATTCGGT 58.757 41.667 0.00 0.00 36.74 4.69
167 168 4.634443 CCAGGTGGAACTAGTAAAATTCGG 59.366 45.833 0.00 0.00 37.39 4.30
168 169 5.243207 ACCAGGTGGAACTAGTAAAATTCG 58.757 41.667 2.10 0.00 38.94 3.34
169 170 7.368059 CAAACCAGGTGGAACTAGTAAAATTC 58.632 38.462 2.10 0.00 38.94 2.17
170 171 6.266786 CCAAACCAGGTGGAACTAGTAAAATT 59.733 38.462 2.10 0.00 38.54 1.82
171 172 5.773176 CCAAACCAGGTGGAACTAGTAAAAT 59.227 40.000 2.10 0.00 38.54 1.82
172 173 5.134661 CCAAACCAGGTGGAACTAGTAAAA 58.865 41.667 2.10 0.00 38.54 1.52
173 174 4.166531 ACCAAACCAGGTGGAACTAGTAAA 59.833 41.667 2.10 0.00 41.30 2.01
174 175 3.717913 ACCAAACCAGGTGGAACTAGTAA 59.282 43.478 2.10 0.00 41.30 2.24
175 176 3.320129 ACCAAACCAGGTGGAACTAGTA 58.680 45.455 2.10 0.00 41.30 1.82
176 177 2.132686 ACCAAACCAGGTGGAACTAGT 58.867 47.619 2.10 0.00 41.30 2.57
177 178 2.951229 ACCAAACCAGGTGGAACTAG 57.049 50.000 2.10 0.00 41.30 2.57
178 179 4.089408 GTTACCAAACCAGGTGGAACTA 57.911 45.455 2.10 0.00 43.14 2.24
179 180 2.940158 GTTACCAAACCAGGTGGAACT 58.060 47.619 2.10 0.00 43.14 3.01
213 214 3.544684 TGACTCCAATTCCATGATTCCG 58.455 45.455 0.00 0.00 0.00 4.30
231 240 5.578776 ACAAGAAAACGTCTGGATTTTGAC 58.421 37.500 0.00 0.00 36.40 3.18
250 259 2.434185 TGCTAGCGGCCGAACAAG 60.434 61.111 33.48 19.85 40.92 3.16
265 274 1.166531 GGCAATACTGATCCCGGTGC 61.167 60.000 0.00 0.00 33.18 5.01
423 440 0.260523 GAGTAGGGCAGAGGAGACCT 59.739 60.000 0.00 0.00 36.03 3.85
678 719 1.861971 GGAACGCCTCTATTAACCGG 58.138 55.000 0.00 0.00 0.00 5.28
693 734 6.201997 ACCAAAATTGCTTAAATCAACGGAAC 59.798 34.615 0.00 0.00 0.00 3.62
694 735 6.284459 ACCAAAATTGCTTAAATCAACGGAA 58.716 32.000 0.00 0.00 0.00 4.30
695 736 5.848406 ACCAAAATTGCTTAAATCAACGGA 58.152 33.333 0.00 0.00 0.00 4.69
696 737 6.361899 CAACCAAAATTGCTTAAATCAACGG 58.638 36.000 0.00 0.00 0.00 4.44
957 1011 1.502190 GCTAGACGGCCAAACAAGC 59.498 57.895 2.24 0.33 0.00 4.01
984 1039 1.445095 CATCTTCTGAGCCTCGGGG 59.555 63.158 0.00 0.00 0.00 5.73
995 1050 2.759973 TCTCGCCGGCCATCTTCT 60.760 61.111 23.46 0.00 0.00 2.85
1102 1157 1.274703 GGAGGAGGTGCAAGGGATGA 61.275 60.000 0.00 0.00 0.00 2.92
1113 1169 2.043450 CGAGCAGGAGGAGGAGGT 60.043 66.667 0.00 0.00 0.00 3.85
1207 1279 0.820482 ACAACACTAAACGGGGGCAC 60.820 55.000 0.00 0.00 0.00 5.01
1209 1281 1.034356 AAACAACACTAAACGGGGGC 58.966 50.000 0.00 0.00 0.00 5.80
1218 1290 1.837538 GCGCGCTCCAAACAACACTA 61.838 55.000 26.67 0.00 0.00 2.74
1222 1296 2.127232 GAGCGCGCTCCAAACAAC 60.127 61.111 43.49 22.03 37.11 3.32
1283 1357 1.337821 GACGACAACTTCCTGCGTAG 58.662 55.000 0.00 0.00 35.09 3.51
1437 1511 1.908340 GAGTGGACCAGGATGCTGCT 61.908 60.000 9.03 0.00 31.97 4.24
1438 1512 1.451028 GAGTGGACCAGGATGCTGC 60.451 63.158 9.03 0.00 31.97 5.25
1439 1513 0.107800 CAGAGTGGACCAGGATGCTG 60.108 60.000 7.35 7.35 31.97 4.41
1440 1514 0.546267 ACAGAGTGGACCAGGATGCT 60.546 55.000 0.00 0.00 31.97 3.79
1441 1515 0.107945 GACAGAGTGGACCAGGATGC 60.108 60.000 0.00 0.00 31.97 3.91
1442 1516 1.269958 TGACAGAGTGGACCAGGATG 58.730 55.000 0.00 0.00 0.00 3.51
1443 1517 2.030027 TTGACAGAGTGGACCAGGAT 57.970 50.000 0.00 0.00 0.00 3.24
1444 1518 2.030027 ATTGACAGAGTGGACCAGGA 57.970 50.000 0.00 0.00 0.00 3.86
1445 1519 2.419297 GCTATTGACAGAGTGGACCAGG 60.419 54.545 0.00 0.00 0.00 4.45
1446 1520 2.499289 AGCTATTGACAGAGTGGACCAG 59.501 50.000 0.00 0.00 0.00 4.00
1447 1521 2.540383 AGCTATTGACAGAGTGGACCA 58.460 47.619 0.00 0.00 0.00 4.02
1448 1522 3.265791 CAAGCTATTGACAGAGTGGACC 58.734 50.000 0.00 0.00 38.83 4.46
1449 1523 3.265791 CCAAGCTATTGACAGAGTGGAC 58.734 50.000 0.00 0.00 38.83 4.02
1450 1524 2.355108 GCCAAGCTATTGACAGAGTGGA 60.355 50.000 0.00 0.00 38.83 4.02
1451 1525 2.012673 GCCAAGCTATTGACAGAGTGG 58.987 52.381 0.00 0.00 38.83 4.00
1460 1534 7.500141 ACAAAATTTATAGGGCCAAGCTATTG 58.500 34.615 6.18 3.94 36.09 1.90
1483 1565 4.216902 CACATGAAGCAGAGGAATGAAACA 59.783 41.667 0.00 0.00 0.00 2.83
1485 1567 3.192001 GCACATGAAGCAGAGGAATGAAA 59.808 43.478 0.00 0.00 0.00 2.69
1492 1574 1.134367 CCAATGCACATGAAGCAGAGG 59.866 52.381 19.07 17.93 46.36 3.69
1515 1693 2.613026 ACAACCGTGAGTTCATGACA 57.387 45.000 0.00 0.00 36.18 3.58
1627 1817 2.281484 GGAACGCAGACCAGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
1641 1831 4.344865 GCAGGTGCTTCCCCGGAA 62.345 66.667 0.73 0.00 38.21 4.30
1689 1879 1.448069 TGGCACAGGACGTTTGCTA 59.552 52.632 6.27 0.00 36.46 3.49
1890 2098 4.337555 CCGAAATCAAGCATGAGATCCTTT 59.662 41.667 0.00 0.00 39.39 3.11
1901 2109 1.825090 ACAGATGCCGAAATCAAGCA 58.175 45.000 0.00 0.00 41.50 3.91
2053 2263 6.034683 CCTTGAGACGTATGTTTGCTAAGTAC 59.965 42.308 0.00 0.00 0.00 2.73
2059 2269 3.678056 TCCTTGAGACGTATGTTTGCT 57.322 42.857 0.00 0.00 0.00 3.91
2138 2771 8.002459 TCATAGGAAGTATGTCATACTGGTGTA 58.998 37.037 23.22 13.86 44.94 2.90
2315 3037 0.987294 ACATTGTGGGACAGAGGGAG 59.013 55.000 0.00 0.00 41.80 4.30
2316 3038 2.335681 TACATTGTGGGACAGAGGGA 57.664 50.000 0.00 0.00 41.80 4.20
2317 3039 2.571653 TCTTACATTGTGGGACAGAGGG 59.428 50.000 0.00 0.00 41.80 4.30
2318 3040 3.600388 GTCTTACATTGTGGGACAGAGG 58.400 50.000 14.69 0.00 41.80 3.69
2319 3041 3.254060 CGTCTTACATTGTGGGACAGAG 58.746 50.000 17.65 4.87 41.80 3.35
2320 3042 2.611971 GCGTCTTACATTGTGGGACAGA 60.612 50.000 17.65 3.82 41.80 3.41
2321 3043 1.732259 GCGTCTTACATTGTGGGACAG 59.268 52.381 17.65 13.16 41.80 3.51
2322 3044 1.346395 AGCGTCTTACATTGTGGGACA 59.654 47.619 17.65 0.00 0.00 4.02
2323 3045 2.094762 AGCGTCTTACATTGTGGGAC 57.905 50.000 0.00 6.72 0.00 4.46
2324 3046 2.851263 AAGCGTCTTACATTGTGGGA 57.149 45.000 0.00 0.00 0.00 4.37
2325 3047 3.564511 CAAAAGCGTCTTACATTGTGGG 58.435 45.455 0.00 0.00 0.00 4.61
2326 3048 2.979813 GCAAAAGCGTCTTACATTGTGG 59.020 45.455 0.00 0.00 0.00 4.17
2327 3049 3.626977 TGCAAAAGCGTCTTACATTGTG 58.373 40.909 0.00 0.00 0.00 3.33
2328 3050 3.980646 TGCAAAAGCGTCTTACATTGT 57.019 38.095 0.00 0.00 0.00 2.71
2329 3051 3.120121 GCTTGCAAAAGCGTCTTACATTG 59.880 43.478 0.00 0.00 35.93 2.82
2330 3052 3.308530 GCTTGCAAAAGCGTCTTACATT 58.691 40.909 0.00 0.00 35.93 2.71
2331 3053 2.933769 GCTTGCAAAAGCGTCTTACAT 58.066 42.857 0.00 0.00 35.93 2.29
2332 3054 2.399396 GCTTGCAAAAGCGTCTTACA 57.601 45.000 0.00 0.00 35.93 2.41
2360 3082 6.258160 CCACAATATAAGACGCTTTTGGAAG 58.742 40.000 0.00 0.00 35.92 3.46
2361 3083 5.124776 CCCACAATATAAGACGCTTTTGGAA 59.875 40.000 0.00 0.00 0.00 3.53
2362 3084 4.638421 CCCACAATATAAGACGCTTTTGGA 59.362 41.667 0.00 0.00 0.00 3.53
2363 3085 4.638421 TCCCACAATATAAGACGCTTTTGG 59.362 41.667 0.00 0.00 0.00 3.28
2364 3086 5.569413 GTCCCACAATATAAGACGCTTTTG 58.431 41.667 0.00 0.72 0.00 2.44
2365 3087 4.331717 CGTCCCACAATATAAGACGCTTTT 59.668 41.667 0.00 0.00 43.07 2.27
2366 3088 3.869246 CGTCCCACAATATAAGACGCTTT 59.131 43.478 0.00 0.00 43.07 3.51
2367 3089 3.454375 CGTCCCACAATATAAGACGCTT 58.546 45.455 0.00 0.00 43.07 4.68
2368 3090 2.223971 CCGTCCCACAATATAAGACGCT 60.224 50.000 5.39 0.00 46.66 5.07
2369 3091 2.132762 CCGTCCCACAATATAAGACGC 58.867 52.381 5.39 0.00 46.66 5.19
2371 3093 3.244112 CCCTCCGTCCCACAATATAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2372 3094 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2373 3095 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
2374 3096 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
2375 3097 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
2376 3098 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
2377 3099 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
2378 3100 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
2379 3101 0.042131 ATACTCCCTCCGTCCCACAA 59.958 55.000 0.00 0.00 0.00 3.33
2380 3102 0.042131 AATACTCCCTCCGTCCCACA 59.958 55.000 0.00 0.00 0.00 4.17
2381 3103 1.134491 CAAATACTCCCTCCGTCCCAC 60.134 57.143 0.00 0.00 0.00 4.61
2382 3104 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
2383 3105 1.492764 TCAAATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
2384 3106 6.600882 TTATATCAAATACTCCCTCCGTCC 57.399 41.667 0.00 0.00 0.00 4.79
2385 3107 6.071278 AGCTTATATCAAATACTCCCTCCGTC 60.071 42.308 0.00 0.00 0.00 4.79
2386 3108 5.780793 AGCTTATATCAAATACTCCCTCCGT 59.219 40.000 0.00 0.00 0.00 4.69
2387 3109 6.287589 AGCTTATATCAAATACTCCCTCCG 57.712 41.667 0.00 0.00 0.00 4.63
2388 3110 7.608376 GGAAAGCTTATATCAAATACTCCCTCC 59.392 40.741 0.00 0.00 0.00 4.30
2389 3111 8.379331 AGGAAAGCTTATATCAAATACTCCCTC 58.621 37.037 0.00 0.00 0.00 4.30
2390 3112 8.281529 AGGAAAGCTTATATCAAATACTCCCT 57.718 34.615 0.00 0.00 0.00 4.20
2391 3113 8.787852 CAAGGAAAGCTTATATCAAATACTCCC 58.212 37.037 0.00 0.00 0.00 4.30
2392 3114 8.293157 GCAAGGAAAGCTTATATCAAATACTCC 58.707 37.037 0.00 0.00 0.00 3.85
2393 3115 8.840321 TGCAAGGAAAGCTTATATCAAATACTC 58.160 33.333 0.00 0.00 0.00 2.59
2394 3116 8.752005 TGCAAGGAAAGCTTATATCAAATACT 57.248 30.769 0.00 0.00 0.00 2.12
2439 3161 8.514594 AGTTATTGATCGTCATTCAAACATGTT 58.485 29.630 4.92 4.92 36.72 2.71
2709 3441 6.231951 AGCTAGAAAACTGAAGGAAGTAACC 58.768 40.000 0.00 0.00 0.00 2.85
2990 3733 6.490040 AGTGGTCAGCACAAACATAATACTTT 59.510 34.615 10.19 0.00 0.00 2.66
2992 3735 5.560724 AGTGGTCAGCACAAACATAATACT 58.439 37.500 10.19 0.00 0.00 2.12
3148 3895 0.884514 CTGCGAGTCTGAAGACCTCA 59.115 55.000 6.84 2.57 45.85 3.86
3225 3972 1.450312 CCCATCCTGCGTTGTCTCC 60.450 63.158 0.00 0.00 0.00 3.71
3226 3973 1.450312 CCCCATCCTGCGTTGTCTC 60.450 63.158 0.00 0.00 0.00 3.36
3227 3974 2.671070 CCCCATCCTGCGTTGTCT 59.329 61.111 0.00 0.00 0.00 3.41
3456 4203 1.254026 ACAGTTTCTCCATCGGACGA 58.746 50.000 0.00 0.00 0.00 4.20
3851 4598 0.749649 CCATCCTAGCGTTCTCTGCT 59.250 55.000 0.00 0.00 46.29 4.24
3880 4627 2.177594 CTGAGCTTCCAACTCGGCCT 62.178 60.000 0.00 0.00 36.94 5.19
3943 4690 2.055100 GCGATCGGTATCTTCTTCTGC 58.945 52.381 18.30 0.00 0.00 4.26
3944 4691 3.355626 TGCGATCGGTATCTTCTTCTG 57.644 47.619 18.30 0.00 0.00 3.02
4137 4884 1.605453 GGTTGGAGTAATGCCCGGA 59.395 57.895 0.73 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.