Multiple sequence alignment - TraesCS2A01G344700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G344700 | chr2A | 100.000 | 3488 | 0 | 0 | 1 | 3488 | 581966230 | 581962743 | 0.000000e+00 | 6442.0 |
1 | TraesCS2A01G344700 | chr2A | 91.584 | 202 | 15 | 2 | 418 | 618 | 38649763 | 38649963 | 9.540000e-71 | 278.0 |
2 | TraesCS2A01G344700 | chr7A | 88.284 | 2040 | 161 | 43 | 985 | 2990 | 668062049 | 668064044 | 0.000000e+00 | 2372.0 |
3 | TraesCS2A01G344700 | chr7A | 92.437 | 119 | 8 | 1 | 3011 | 3128 | 127575988 | 127576106 | 5.990000e-38 | 169.0 |
4 | TraesCS2A01G344700 | chr7A | 88.506 | 87 | 10 | 0 | 667 | 753 | 668061714 | 668061800 | 4.760000e-19 | 106.0 |
5 | TraesCS2A01G344700 | chr7A | 94.595 | 37 | 1 | 1 | 296 | 331 | 668060805 | 668060841 | 4.860000e-04 | 56.5 |
6 | TraesCS2A01G344700 | chr7D | 89.047 | 1333 | 89 | 23 | 805 | 2115 | 576657926 | 576659223 | 0.000000e+00 | 1600.0 |
7 | TraesCS2A01G344700 | chr7D | 94.161 | 805 | 41 | 6 | 2190 | 2990 | 576661103 | 576661905 | 0.000000e+00 | 1221.0 |
8 | TraesCS2A01G344700 | chr7D | 81.096 | 365 | 26 | 24 | 1 | 362 | 576657405 | 576657729 | 5.780000e-63 | 252.0 |
9 | TraesCS2A01G344700 | chr7D | 93.162 | 117 | 7 | 1 | 3012 | 3127 | 89485349 | 89485465 | 1.660000e-38 | 171.0 |
10 | TraesCS2A01G344700 | chr7D | 93.162 | 117 | 7 | 1 | 3012 | 3127 | 471475332 | 471475448 | 1.660000e-38 | 171.0 |
11 | TraesCS2A01G344700 | chr2D | 98.115 | 902 | 16 | 1 | 1652 | 2552 | 414973180 | 414972279 | 0.000000e+00 | 1570.0 |
12 | TraesCS2A01G344700 | chr2D | 97.738 | 663 | 13 | 2 | 606 | 1267 | 414973836 | 414973175 | 0.000000e+00 | 1140.0 |
13 | TraesCS2A01G344700 | chr2D | 91.927 | 384 | 10 | 2 | 1 | 363 | 414974251 | 414973868 | 5.160000e-143 | 518.0 |
14 | TraesCS2A01G344700 | chr2D | 88.360 | 378 | 12 | 5 | 3128 | 3488 | 414962362 | 414962000 | 3.220000e-115 | 425.0 |
15 | TraesCS2A01G344700 | chr2D | 91.964 | 224 | 12 | 4 | 3269 | 3488 | 414956671 | 414956450 | 3.380000e-80 | 309.0 |
16 | TraesCS2A01G344700 | chr2D | 95.732 | 164 | 6 | 1 | 2853 | 3015 | 414962529 | 414962366 | 2.670000e-66 | 263.0 |
17 | TraesCS2A01G344700 | chr2D | 93.103 | 87 | 6 | 0 | 2129 | 2215 | 78530005 | 78530091 | 1.020000e-25 | 128.0 |
18 | TraesCS2A01G344700 | chr2D | 98.551 | 69 | 1 | 0 | 359 | 427 | 414973896 | 414973828 | 4.730000e-24 | 122.0 |
19 | TraesCS2A01G344700 | chr2D | 90.805 | 87 | 8 | 0 | 2129 | 2215 | 78530092 | 78530006 | 2.200000e-22 | 117.0 |
20 | TraesCS2A01G344700 | chr6B | 87.105 | 1233 | 103 | 22 | 919 | 2131 | 711665109 | 711666305 | 0.000000e+00 | 1345.0 |
21 | TraesCS2A01G344700 | chr6B | 86.751 | 1185 | 110 | 16 | 973 | 2131 | 711695142 | 711693979 | 0.000000e+00 | 1275.0 |
22 | TraesCS2A01G344700 | chr6B | 81.543 | 1024 | 168 | 11 | 1108 | 2124 | 159702531 | 159703540 | 0.000000e+00 | 824.0 |
23 | TraesCS2A01G344700 | chr6B | 86.520 | 727 | 78 | 14 | 2247 | 2964 | 711693962 | 711693247 | 0.000000e+00 | 782.0 |
24 | TraesCS2A01G344700 | chr6B | 88.189 | 635 | 62 | 6 | 2220 | 2846 | 142098587 | 142097958 | 0.000000e+00 | 745.0 |
25 | TraesCS2A01G344700 | chr6B | 88.160 | 625 | 63 | 8 | 2247 | 2863 | 711666320 | 711666941 | 0.000000e+00 | 734.0 |
26 | TraesCS2A01G344700 | chr6B | 85.714 | 105 | 8 | 5 | 262 | 363 | 665162801 | 665162701 | 1.710000e-18 | 104.0 |
27 | TraesCS2A01G344700 | chr6B | 81.818 | 99 | 11 | 5 | 265 | 360 | 665422166 | 665422072 | 3.730000e-10 | 76.8 |
28 | TraesCS2A01G344700 | chr6D | 87.649 | 1174 | 104 | 19 | 972 | 2131 | 466551956 | 466550810 | 0.000000e+00 | 1327.0 |
29 | TraesCS2A01G344700 | chr6D | 89.380 | 1064 | 93 | 9 | 1086 | 2131 | 466543999 | 466545060 | 0.000000e+00 | 1321.0 |
30 | TraesCS2A01G344700 | chr6D | 83.391 | 1162 | 157 | 16 | 985 | 2128 | 67326879 | 67325736 | 0.000000e+00 | 1044.0 |
31 | TraesCS2A01G344700 | chr6D | 86.624 | 785 | 78 | 20 | 2220 | 2994 | 67325715 | 67324948 | 0.000000e+00 | 843.0 |
32 | TraesCS2A01G344700 | chr6D | 86.245 | 727 | 80 | 14 | 2247 | 2964 | 466550793 | 466550078 | 0.000000e+00 | 771.0 |
33 | TraesCS2A01G344700 | chr6D | 87.153 | 685 | 70 | 11 | 2215 | 2889 | 466527392 | 466526716 | 0.000000e+00 | 761.0 |
34 | TraesCS2A01G344700 | chr6D | 78.927 | 261 | 27 | 20 | 1 | 243 | 466552972 | 466552722 | 6.030000e-33 | 152.0 |
35 | TraesCS2A01G344700 | chr6D | 85.714 | 105 | 8 | 5 | 262 | 363 | 439922659 | 439922559 | 1.710000e-18 | 104.0 |
36 | TraesCS2A01G344700 | chr6D | 82.192 | 73 | 10 | 3 | 2943 | 3014 | 466526626 | 466526556 | 3.760000e-05 | 60.2 |
37 | TraesCS2A01G344700 | chr5A | 81.841 | 1195 | 140 | 30 | 732 | 1908 | 46959223 | 46960358 | 0.000000e+00 | 933.0 |
38 | TraesCS2A01G344700 | chr5A | 93.158 | 190 | 12 | 1 | 418 | 607 | 475465419 | 475465607 | 9.540000e-71 | 278.0 |
39 | TraesCS2A01G344700 | chr6A | 84.470 | 792 | 92 | 23 | 2216 | 2994 | 84698844 | 84698071 | 0.000000e+00 | 752.0 |
40 | TraesCS2A01G344700 | chr6A | 95.531 | 179 | 8 | 0 | 429 | 607 | 7988636 | 7988458 | 1.580000e-73 | 287.0 |
41 | TraesCS2A01G344700 | chr2B | 92.727 | 220 | 13 | 3 | 3270 | 3488 | 488193455 | 488193238 | 7.270000e-82 | 315.0 |
42 | TraesCS2A01G344700 | chr2B | 93.103 | 87 | 6 | 0 | 2129 | 2215 | 121669390 | 121669476 | 1.020000e-25 | 128.0 |
43 | TraesCS2A01G344700 | chr2B | 90.805 | 87 | 8 | 0 | 2129 | 2215 | 121669477 | 121669391 | 2.200000e-22 | 117.0 |
44 | TraesCS2A01G344700 | chr2B | 83.721 | 86 | 11 | 1 | 258 | 343 | 246570439 | 246570521 | 1.040000e-10 | 78.7 |
45 | TraesCS2A01G344700 | chr4A | 96.067 | 178 | 7 | 0 | 429 | 606 | 124610229 | 124610406 | 1.220000e-74 | 291.0 |
46 | TraesCS2A01G344700 | chr4A | 92.784 | 194 | 10 | 4 | 429 | 621 | 544173530 | 544173340 | 9.540000e-71 | 278.0 |
47 | TraesCS2A01G344700 | chr4A | 91.133 | 203 | 14 | 4 | 429 | 629 | 11366199 | 11365999 | 4.440000e-69 | 272.0 |
48 | TraesCS2A01G344700 | chr1A | 95.531 | 179 | 8 | 0 | 429 | 607 | 271887437 | 271887615 | 1.580000e-73 | 287.0 |
49 | TraesCS2A01G344700 | chr1A | 93.023 | 86 | 6 | 0 | 2130 | 2215 | 307036739 | 307036824 | 3.650000e-25 | 126.0 |
50 | TraesCS2A01G344700 | chr1D | 95.506 | 178 | 8 | 0 | 429 | 606 | 493673646 | 493673823 | 5.700000e-73 | 285.0 |
51 | TraesCS2A01G344700 | chr1D | 91.736 | 121 | 8 | 2 | 3008 | 3127 | 410027975 | 410027856 | 2.150000e-37 | 167.0 |
52 | TraesCS2A01G344700 | chr4D | 94.118 | 187 | 10 | 1 | 429 | 614 | 62231398 | 62231212 | 2.050000e-72 | 283.0 |
53 | TraesCS2A01G344700 | chr4D | 93.258 | 89 | 6 | 0 | 2127 | 2215 | 268071172 | 268071260 | 7.860000e-27 | 132.0 |
54 | TraesCS2A01G344700 | chr4D | 89.899 | 99 | 9 | 1 | 2118 | 2215 | 268071273 | 268071175 | 3.650000e-25 | 126.0 |
55 | TraesCS2A01G344700 | chr1B | 93.162 | 117 | 7 | 1 | 3012 | 3127 | 451733237 | 451733353 | 1.660000e-38 | 171.0 |
56 | TraesCS2A01G344700 | chr7B | 92.373 | 118 | 8 | 1 | 3011 | 3127 | 600652041 | 600652158 | 2.150000e-37 | 167.0 |
57 | TraesCS2A01G344700 | chr3D | 91.736 | 121 | 8 | 2 | 3008 | 3127 | 368727618 | 368727737 | 2.150000e-37 | 167.0 |
58 | TraesCS2A01G344700 | chr3D | 90.909 | 121 | 9 | 2 | 3008 | 3127 | 401223168 | 401223049 | 1.000000e-35 | 161.0 |
59 | TraesCS2A01G344700 | chr3D | 90.909 | 121 | 9 | 2 | 3008 | 3127 | 473682172 | 473682291 | 1.000000e-35 | 161.0 |
60 | TraesCS2A01G344700 | chr4B | 89.362 | 94 | 7 | 3 | 2124 | 2215 | 61303673 | 61303581 | 7.910000e-22 | 115.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G344700 | chr2A | 581962743 | 581966230 | 3487 | True | 6442.000000 | 6442 | 100.000000 | 1 | 3488 | 1 | chr2A.!!$R1 | 3487 |
1 | TraesCS2A01G344700 | chr7A | 668060805 | 668064044 | 3239 | False | 844.833333 | 2372 | 90.461667 | 296 | 2990 | 3 | chr7A.!!$F2 | 2694 |
2 | TraesCS2A01G344700 | chr7D | 576657405 | 576661905 | 4500 | False | 1024.333333 | 1600 | 88.101333 | 1 | 2990 | 3 | chr7D.!!$F3 | 2989 |
3 | TraesCS2A01G344700 | chr2D | 414972279 | 414974251 | 1972 | True | 837.500000 | 1570 | 96.582750 | 1 | 2552 | 4 | chr2D.!!$R4 | 2551 |
4 | TraesCS2A01G344700 | chr2D | 414962000 | 414962529 | 529 | True | 344.000000 | 425 | 92.046000 | 2853 | 3488 | 2 | chr2D.!!$R3 | 635 |
5 | TraesCS2A01G344700 | chr6B | 711665109 | 711666941 | 1832 | False | 1039.500000 | 1345 | 87.632500 | 919 | 2863 | 2 | chr6B.!!$F2 | 1944 |
6 | TraesCS2A01G344700 | chr6B | 711693247 | 711695142 | 1895 | True | 1028.500000 | 1275 | 86.635500 | 973 | 2964 | 2 | chr6B.!!$R4 | 1991 |
7 | TraesCS2A01G344700 | chr6B | 159702531 | 159703540 | 1009 | False | 824.000000 | 824 | 81.543000 | 1108 | 2124 | 1 | chr6B.!!$F1 | 1016 |
8 | TraesCS2A01G344700 | chr6B | 142097958 | 142098587 | 629 | True | 745.000000 | 745 | 88.189000 | 2220 | 2846 | 1 | chr6B.!!$R1 | 626 |
9 | TraesCS2A01G344700 | chr6D | 466543999 | 466545060 | 1061 | False | 1321.000000 | 1321 | 89.380000 | 1086 | 2131 | 1 | chr6D.!!$F1 | 1045 |
10 | TraesCS2A01G344700 | chr6D | 67324948 | 67326879 | 1931 | True | 943.500000 | 1044 | 85.007500 | 985 | 2994 | 2 | chr6D.!!$R2 | 2009 |
11 | TraesCS2A01G344700 | chr6D | 466550078 | 466552972 | 2894 | True | 750.000000 | 1327 | 84.273667 | 1 | 2964 | 3 | chr6D.!!$R4 | 2963 |
12 | TraesCS2A01G344700 | chr6D | 466526556 | 466527392 | 836 | True | 410.600000 | 761 | 84.672500 | 2215 | 3014 | 2 | chr6D.!!$R3 | 799 |
13 | TraesCS2A01G344700 | chr5A | 46959223 | 46960358 | 1135 | False | 933.000000 | 933 | 81.841000 | 732 | 1908 | 1 | chr5A.!!$F1 | 1176 |
14 | TraesCS2A01G344700 | chr6A | 84698071 | 84698844 | 773 | True | 752.000000 | 752 | 84.470000 | 2216 | 2994 | 1 | chr6A.!!$R2 | 778 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
243 | 280 | 0.458669 | TAATCTTGCGGGAGACGGAC | 59.541 | 55.0 | 0.0 | 0.0 | 44.72 | 4.79 | F |
246 | 283 | 0.609957 | TCTTGCGGGAGACGGACTTA | 60.610 | 55.0 | 0.0 | 0.0 | 44.72 | 2.24 | F |
1609 | 2816 | 0.260230 | TTCTCCTGCCGATCTCCTCT | 59.740 | 55.0 | 0.0 | 0.0 | 0.00 | 3.69 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1522 | 2729 | 0.185901 | ACCTTCTGTGTTGCCATGGT | 59.814 | 50.0 | 14.67 | 0.00 | 0.00 | 3.55 | R |
1727 | 2938 | 0.879765 | CTCCAAGAGCTTGCAAGTGG | 59.120 | 55.0 | 26.55 | 24.01 | 39.16 | 4.00 | R |
3116 | 6333 | 0.179062 | GCAGCCACATACTCCCTCTG | 60.179 | 60.0 | 0.00 | 0.00 | 0.00 | 3.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
184 | 221 | 3.691342 | CCTTCGTCGCCACCTCCA | 61.691 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
230 | 267 | 2.223180 | GCGTTTCGGGCGAAATAATCTT | 60.223 | 45.455 | 0.00 | 0.00 | 44.52 | 2.40 |
243 | 280 | 0.458669 | TAATCTTGCGGGAGACGGAC | 59.541 | 55.000 | 0.00 | 0.00 | 44.72 | 4.79 |
246 | 283 | 0.609957 | TCTTGCGGGAGACGGACTTA | 60.610 | 55.000 | 0.00 | 0.00 | 44.72 | 2.24 |
363 | 646 | 7.297108 | TCTTCCTCTCCTCTAATAATCTCCTCT | 59.703 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
364 | 647 | 7.415004 | TCCTCTCCTCTAATAATCTCCTCTT | 57.585 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
365 | 648 | 7.466804 | TCCTCTCCTCTAATAATCTCCTCTTC | 58.533 | 42.308 | 0.00 | 0.00 | 0.00 | 2.87 |
366 | 649 | 6.663523 | CCTCTCCTCTAATAATCTCCTCTTCC | 59.336 | 46.154 | 0.00 | 0.00 | 0.00 | 3.46 |
367 | 650 | 7.415004 | TCTCCTCTAATAATCTCCTCTTCCT | 57.585 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
368 | 651 | 7.466804 | TCTCCTCTAATAATCTCCTCTTCCTC | 58.533 | 42.308 | 0.00 | 0.00 | 0.00 | 3.71 |
369 | 652 | 7.297108 | TCTCCTCTAATAATCTCCTCTTCCTCT | 59.703 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
370 | 653 | 7.466804 | TCCTCTAATAATCTCCTCTTCCTCTC | 58.533 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
371 | 654 | 6.663523 | CCTCTAATAATCTCCTCTTCCTCTCC | 59.336 | 46.154 | 0.00 | 0.00 | 0.00 | 3.71 |
372 | 655 | 7.415004 | TCTAATAATCTCCTCTTCCTCTCCT | 57.585 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
373 | 656 | 7.466804 | TCTAATAATCTCCTCTTCCTCTCCTC | 58.533 | 42.308 | 0.00 | 0.00 | 0.00 | 3.71 |
374 | 657 | 5.948481 | ATAATCTCCTCTTCCTCTCCTCT | 57.052 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
375 | 658 | 7.415004 | AATAATCTCCTCTTCCTCTCCTCTA | 57.585 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
376 | 659 | 5.742562 | AATCTCCTCTTCCTCTCCTCTAA | 57.257 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
377 | 660 | 5.948481 | ATCTCCTCTTCCTCTCCTCTAAT | 57.052 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
378 | 661 | 7.415004 | AATCTCCTCTTCCTCTCCTCTAATA | 57.585 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
379 | 662 | 6.850263 | TCTCCTCTTCCTCTCCTCTAATAA | 57.150 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
380 | 663 | 7.415004 | TCTCCTCTTCCTCTCCTCTAATAAT | 57.585 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
381 | 664 | 7.466804 | TCTCCTCTTCCTCTCCTCTAATAATC | 58.533 | 42.308 | 0.00 | 0.00 | 0.00 | 1.75 |
382 | 665 | 7.297108 | TCTCCTCTTCCTCTCCTCTAATAATCT | 59.703 | 40.741 | 0.00 | 0.00 | 0.00 | 2.40 |
383 | 666 | 7.466804 | TCCTCTTCCTCTCCTCTAATAATCTC | 58.533 | 42.308 | 0.00 | 0.00 | 0.00 | 2.75 |
384 | 667 | 6.663523 | CCTCTTCCTCTCCTCTAATAATCTCC | 59.336 | 46.154 | 0.00 | 0.00 | 0.00 | 3.71 |
385 | 668 | 7.415004 | TCTTCCTCTCCTCTAATAATCTCCT | 57.585 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
386 | 669 | 7.466804 | TCTTCCTCTCCTCTAATAATCTCCTC | 58.533 | 42.308 | 0.00 | 0.00 | 0.00 | 3.71 |
421 | 704 | 1.073125 | TGTGCAATCGGGGAAGAGAAA | 59.927 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
427 | 710 | 4.513318 | GCAATCGGGGAAGAGAAAAGATAG | 59.487 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
428 | 711 | 4.965200 | ATCGGGGAAGAGAAAAGATAGG | 57.035 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
429 | 712 | 3.721021 | TCGGGGAAGAGAAAAGATAGGT | 58.279 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
430 | 713 | 3.705072 | TCGGGGAAGAGAAAAGATAGGTC | 59.295 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
431 | 714 | 3.707102 | CGGGGAAGAGAAAAGATAGGTCT | 59.293 | 47.826 | 0.00 | 0.00 | 35.82 | 3.85 |
432 | 715 | 4.894114 | CGGGGAAGAGAAAAGATAGGTCTA | 59.106 | 45.833 | 0.00 | 0.00 | 33.30 | 2.59 |
433 | 716 | 5.010213 | CGGGGAAGAGAAAAGATAGGTCTAG | 59.990 | 48.000 | 0.00 | 0.00 | 33.30 | 2.43 |
434 | 717 | 5.305902 | GGGGAAGAGAAAAGATAGGTCTAGG | 59.694 | 48.000 | 0.00 | 0.00 | 33.30 | 3.02 |
435 | 718 | 5.305902 | GGGAAGAGAAAAGATAGGTCTAGGG | 59.694 | 48.000 | 0.00 | 0.00 | 33.30 | 3.53 |
436 | 719 | 5.221561 | GGAAGAGAAAAGATAGGTCTAGGGC | 60.222 | 48.000 | 0.00 | 0.00 | 33.30 | 5.19 |
437 | 720 | 4.884961 | AGAGAAAAGATAGGTCTAGGGCA | 58.115 | 43.478 | 0.00 | 0.00 | 33.30 | 5.36 |
438 | 721 | 4.651962 | AGAGAAAAGATAGGTCTAGGGCAC | 59.348 | 45.833 | 0.00 | 0.00 | 33.30 | 5.01 |
439 | 722 | 4.362677 | AGAAAAGATAGGTCTAGGGCACA | 58.637 | 43.478 | 0.00 | 0.00 | 33.30 | 4.57 |
440 | 723 | 4.971924 | AGAAAAGATAGGTCTAGGGCACAT | 59.028 | 41.667 | 0.00 | 0.00 | 33.30 | 3.21 |
441 | 724 | 4.965200 | AAAGATAGGTCTAGGGCACATC | 57.035 | 45.455 | 0.00 | 0.00 | 33.30 | 3.06 |
442 | 725 | 3.913370 | AGATAGGTCTAGGGCACATCT | 57.087 | 47.619 | 0.00 | 0.00 | 31.36 | 2.90 |
443 | 726 | 5.340891 | AAGATAGGTCTAGGGCACATCTA | 57.659 | 43.478 | 0.00 | 0.00 | 33.30 | 1.98 |
444 | 727 | 4.929479 | AGATAGGTCTAGGGCACATCTAG | 58.071 | 47.826 | 0.00 | 0.00 | 36.46 | 2.43 |
445 | 728 | 4.604050 | AGATAGGTCTAGGGCACATCTAGA | 59.396 | 45.833 | 0.00 | 0.00 | 40.38 | 2.43 |
446 | 729 | 3.913370 | AGGTCTAGGGCACATCTAGAT | 57.087 | 47.619 | 0.00 | 0.00 | 43.25 | 1.98 |
447 | 730 | 6.448714 | AGATAGGTCTAGGGCACATCTAGATA | 59.551 | 42.308 | 4.54 | 0.00 | 43.25 | 1.98 |
448 | 731 | 5.544441 | AGGTCTAGGGCACATCTAGATAT | 57.456 | 43.478 | 4.54 | 0.00 | 43.25 | 1.63 |
449 | 732 | 5.268387 | AGGTCTAGGGCACATCTAGATATG | 58.732 | 45.833 | 6.64 | 6.64 | 43.25 | 1.78 |
450 | 733 | 4.142049 | GGTCTAGGGCACATCTAGATATGC | 60.142 | 50.000 | 24.83 | 24.83 | 43.25 | 3.14 |
451 | 734 | 4.709397 | GTCTAGGGCACATCTAGATATGCT | 59.291 | 45.833 | 29.70 | 17.06 | 43.25 | 3.79 |
452 | 735 | 4.952957 | TCTAGGGCACATCTAGATATGCTC | 59.047 | 45.833 | 29.70 | 27.72 | 41.84 | 4.26 |
453 | 736 | 3.788933 | AGGGCACATCTAGATATGCTCT | 58.211 | 45.455 | 28.95 | 28.95 | 46.41 | 4.09 |
467 | 750 | 9.299963 | CTAGATATGCTCTAGTTATTGCACATC | 57.700 | 37.037 | 0.00 | 0.00 | 45.79 | 3.06 |
468 | 751 | 7.905265 | AGATATGCTCTAGTTATTGCACATCT | 58.095 | 34.615 | 2.31 | 2.31 | 42.53 | 2.90 |
469 | 752 | 9.029368 | AGATATGCTCTAGTTATTGCACATCTA | 57.971 | 33.333 | 5.90 | 0.00 | 44.54 | 1.98 |
470 | 753 | 9.645059 | GATATGCTCTAGTTATTGCACATCTAA | 57.355 | 33.333 | 0.00 | 0.00 | 36.69 | 2.10 |
471 | 754 | 7.959689 | ATGCTCTAGTTATTGCACATCTAAG | 57.040 | 36.000 | 0.00 | 0.00 | 38.29 | 2.18 |
472 | 755 | 6.878317 | TGCTCTAGTTATTGCACATCTAAGT | 58.122 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
473 | 756 | 6.758416 | TGCTCTAGTTATTGCACATCTAAGTG | 59.242 | 38.462 | 0.00 | 0.00 | 42.37 | 3.16 |
474 | 757 | 6.980978 | GCTCTAGTTATTGCACATCTAAGTGA | 59.019 | 38.462 | 0.00 | 0.00 | 42.05 | 3.41 |
475 | 758 | 7.168972 | GCTCTAGTTATTGCACATCTAAGTGAG | 59.831 | 40.741 | 0.00 | 0.00 | 42.05 | 3.51 |
476 | 759 | 8.067751 | TCTAGTTATTGCACATCTAAGTGAGT | 57.932 | 34.615 | 0.00 | 0.00 | 42.05 | 3.41 |
477 | 760 | 6.974932 | AGTTATTGCACATCTAAGTGAGTG | 57.025 | 37.500 | 0.00 | 0.00 | 42.05 | 3.51 |
478 | 761 | 6.701340 | AGTTATTGCACATCTAAGTGAGTGA | 58.299 | 36.000 | 0.00 | 0.00 | 42.05 | 3.41 |
479 | 762 | 7.161404 | AGTTATTGCACATCTAAGTGAGTGAA | 58.839 | 34.615 | 0.00 | 0.00 | 42.05 | 3.18 |
480 | 763 | 7.826252 | AGTTATTGCACATCTAAGTGAGTGAAT | 59.174 | 33.333 | 0.00 | 0.00 | 42.05 | 2.57 |
481 | 764 | 6.674694 | ATTGCACATCTAAGTGAGTGAATC | 57.325 | 37.500 | 0.00 | 0.00 | 42.05 | 2.52 |
482 | 765 | 5.151297 | TGCACATCTAAGTGAGTGAATCA | 57.849 | 39.130 | 0.00 | 0.00 | 42.05 | 2.57 |
483 | 766 | 5.550290 | TGCACATCTAAGTGAGTGAATCAA | 58.450 | 37.500 | 0.00 | 0.00 | 42.05 | 2.57 |
484 | 767 | 5.640783 | TGCACATCTAAGTGAGTGAATCAAG | 59.359 | 40.000 | 0.00 | 0.00 | 42.05 | 3.02 |
485 | 768 | 5.447010 | GCACATCTAAGTGAGTGAATCAAGC | 60.447 | 44.000 | 0.00 | 0.00 | 42.05 | 4.01 |
486 | 769 | 5.640783 | CACATCTAAGTGAGTGAATCAAGCA | 59.359 | 40.000 | 0.00 | 0.00 | 42.05 | 3.91 |
487 | 770 | 6.315642 | CACATCTAAGTGAGTGAATCAAGCAT | 59.684 | 38.462 | 0.00 | 0.00 | 42.05 | 3.79 |
488 | 771 | 7.493645 | CACATCTAAGTGAGTGAATCAAGCATA | 59.506 | 37.037 | 0.00 | 0.00 | 42.05 | 3.14 |
489 | 772 | 8.043113 | ACATCTAAGTGAGTGAATCAAGCATAA | 58.957 | 33.333 | 0.00 | 0.00 | 40.43 | 1.90 |
490 | 773 | 8.886719 | CATCTAAGTGAGTGAATCAAGCATAAA | 58.113 | 33.333 | 0.00 | 0.00 | 40.43 | 1.40 |
491 | 774 | 8.484641 | TCTAAGTGAGTGAATCAAGCATAAAG | 57.515 | 34.615 | 0.00 | 0.00 | 40.43 | 1.85 |
492 | 775 | 8.314021 | TCTAAGTGAGTGAATCAAGCATAAAGA | 58.686 | 33.333 | 0.00 | 0.00 | 40.43 | 2.52 |
493 | 776 | 6.981762 | AGTGAGTGAATCAAGCATAAAGAG | 57.018 | 37.500 | 0.00 | 0.00 | 40.43 | 2.85 |
494 | 777 | 5.879223 | AGTGAGTGAATCAAGCATAAAGAGG | 59.121 | 40.000 | 0.00 | 0.00 | 40.43 | 3.69 |
495 | 778 | 5.877012 | GTGAGTGAATCAAGCATAAAGAGGA | 59.123 | 40.000 | 0.00 | 0.00 | 40.43 | 3.71 |
496 | 779 | 6.372659 | GTGAGTGAATCAAGCATAAAGAGGAA | 59.627 | 38.462 | 0.00 | 0.00 | 40.43 | 3.36 |
497 | 780 | 6.942005 | TGAGTGAATCAAGCATAAAGAGGAAA | 59.058 | 34.615 | 0.00 | 0.00 | 34.02 | 3.13 |
498 | 781 | 7.120285 | TGAGTGAATCAAGCATAAAGAGGAAAG | 59.880 | 37.037 | 0.00 | 0.00 | 34.02 | 2.62 |
499 | 782 | 7.170965 | AGTGAATCAAGCATAAAGAGGAAAGA | 58.829 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
500 | 783 | 7.667219 | AGTGAATCAAGCATAAAGAGGAAAGAA | 59.333 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
501 | 784 | 8.299570 | GTGAATCAAGCATAAAGAGGAAAGAAA | 58.700 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
502 | 785 | 8.859090 | TGAATCAAGCATAAAGAGGAAAGAAAA | 58.141 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
503 | 786 | 9.696917 | GAATCAAGCATAAAGAGGAAAGAAAAA | 57.303 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
527 | 810 | 9.810545 | AAAAAGAAAAAGAAAATATCCACACGA | 57.189 | 25.926 | 0.00 | 0.00 | 0.00 | 4.35 |
528 | 811 | 9.810545 | AAAAGAAAAAGAAAATATCCACACGAA | 57.189 | 25.926 | 0.00 | 0.00 | 0.00 | 3.85 |
529 | 812 | 9.981114 | AAAGAAAAAGAAAATATCCACACGAAT | 57.019 | 25.926 | 0.00 | 0.00 | 0.00 | 3.34 |
530 | 813 | 9.626045 | AAGAAAAAGAAAATATCCACACGAATC | 57.374 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
531 | 814 | 8.792633 | AGAAAAAGAAAATATCCACACGAATCA | 58.207 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
532 | 815 | 8.742554 | AAAAAGAAAATATCCACACGAATCAC | 57.257 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
533 | 816 | 7.447374 | AAAGAAAATATCCACACGAATCACA | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
534 | 817 | 7.447374 | AAGAAAATATCCACACGAATCACAA | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
535 | 818 | 7.630242 | AGAAAATATCCACACGAATCACAAT | 57.370 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
536 | 819 | 7.475015 | AGAAAATATCCACACGAATCACAATG | 58.525 | 34.615 | 0.00 | 0.00 | 0.00 | 2.82 |
537 | 820 | 6.757897 | AAATATCCACACGAATCACAATGT | 57.242 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
538 | 821 | 7.857734 | AAATATCCACACGAATCACAATGTA | 57.142 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
539 | 822 | 7.857734 | AATATCCACACGAATCACAATGTAA | 57.142 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
540 | 823 | 5.801350 | ATCCACACGAATCACAATGTAAG | 57.199 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
541 | 824 | 4.888917 | TCCACACGAATCACAATGTAAGA | 58.111 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
542 | 825 | 5.487433 | TCCACACGAATCACAATGTAAGAT | 58.513 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
543 | 826 | 5.580691 | TCCACACGAATCACAATGTAAGATC | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
544 | 827 | 5.351189 | CCACACGAATCACAATGTAAGATCA | 59.649 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
545 | 828 | 6.128309 | CCACACGAATCACAATGTAAGATCAA | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
546 | 829 | 7.414429 | CCACACGAATCACAATGTAAGATCAAT | 60.414 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
547 | 830 | 7.427318 | CACACGAATCACAATGTAAGATCAATG | 59.573 | 37.037 | 0.00 | 0.00 | 0.00 | 2.82 |
548 | 831 | 7.334171 | ACACGAATCACAATGTAAGATCAATGA | 59.666 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
549 | 832 | 7.637519 | CACGAATCACAATGTAAGATCAATGAC | 59.362 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
550 | 833 | 7.334171 | ACGAATCACAATGTAAGATCAATGACA | 59.666 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
551 | 834 | 8.340443 | CGAATCACAATGTAAGATCAATGACAT | 58.660 | 33.333 | 0.00 | 0.00 | 34.00 | 3.06 |
555 | 838 | 9.889128 | TCACAATGTAAGATCAATGACATAAGA | 57.111 | 29.630 | 0.00 | 0.00 | 32.31 | 2.10 |
556 | 839 | 9.926751 | CACAATGTAAGATCAATGACATAAGAC | 57.073 | 33.333 | 0.00 | 0.00 | 32.31 | 3.01 |
557 | 840 | 9.896645 | ACAATGTAAGATCAATGACATAAGACT | 57.103 | 29.630 | 0.00 | 0.00 | 32.31 | 3.24 |
565 | 848 | 9.761504 | AGATCAATGACATAAGACTTAGATGTG | 57.238 | 33.333 | 8.08 | 1.03 | 33.99 | 3.21 |
566 | 849 | 7.776933 | TCAATGACATAAGACTTAGATGTGC | 57.223 | 36.000 | 8.08 | 2.53 | 33.99 | 4.57 |
567 | 850 | 7.330262 | TCAATGACATAAGACTTAGATGTGCA | 58.670 | 34.615 | 8.08 | 6.89 | 33.99 | 4.57 |
568 | 851 | 7.823799 | TCAATGACATAAGACTTAGATGTGCAA | 59.176 | 33.333 | 8.08 | 0.00 | 33.99 | 4.08 |
569 | 852 | 8.618677 | CAATGACATAAGACTTAGATGTGCAAT | 58.381 | 33.333 | 8.08 | 0.00 | 33.99 | 3.56 |
570 | 853 | 9.836864 | AATGACATAAGACTTAGATGTGCAATA | 57.163 | 29.630 | 8.08 | 0.00 | 33.99 | 1.90 |
571 | 854 | 8.648557 | TGACATAAGACTTAGATGTGCAATAC | 57.351 | 34.615 | 8.08 | 0.00 | 33.99 | 1.89 |
572 | 855 | 8.478066 | TGACATAAGACTTAGATGTGCAATACT | 58.522 | 33.333 | 8.08 | 0.00 | 33.99 | 2.12 |
573 | 856 | 9.319143 | GACATAAGACTTAGATGTGCAATACTT | 57.681 | 33.333 | 8.08 | 0.00 | 33.99 | 2.24 |
577 | 860 | 8.668510 | AAGACTTAGATGTGCAATACTTATGG | 57.331 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
578 | 861 | 6.708054 | AGACTTAGATGTGCAATACTTATGGC | 59.292 | 38.462 | 0.00 | 0.00 | 33.16 | 4.40 |
579 | 862 | 6.356556 | ACTTAGATGTGCAATACTTATGGCA | 58.643 | 36.000 | 0.00 | 0.00 | 40.19 | 4.92 |
632 | 915 | 1.486439 | AAATTTCTGTTTGTGCGGCG | 58.514 | 45.000 | 0.51 | 0.51 | 0.00 | 6.46 |
654 | 937 | 1.272704 | GGGCTGTCCAAAAGGAGGAAT | 60.273 | 52.381 | 0.00 | 0.00 | 36.80 | 3.01 |
797 | 1892 | 2.159352 | TCGTCGATCGAATAAGTTGGCA | 60.159 | 45.455 | 21.31 | 0.00 | 45.98 | 4.92 |
820 | 1915 | 2.028203 | CCCTGATTTGATTTTTGCCGGT | 60.028 | 45.455 | 1.90 | 0.00 | 0.00 | 5.28 |
835 | 1930 | 2.280628 | GCCGGTGATTAGTCTCCTTTG | 58.719 | 52.381 | 1.90 | 0.00 | 36.16 | 2.77 |
1161 | 2353 | 2.514205 | ATGCAACACAGAAAGCAACC | 57.486 | 45.000 | 0.00 | 0.00 | 40.76 | 3.77 |
1271 | 2466 | 1.867233 | GGACACGCTCGATGCAATAAT | 59.133 | 47.619 | 0.00 | 0.00 | 43.06 | 1.28 |
1287 | 2482 | 5.005740 | GCAATAATGACCTGCATCCTATCA | 58.994 | 41.667 | 0.00 | 0.00 | 35.78 | 2.15 |
1307 | 2502 | 4.758688 | TCAAAGCGAATGATGAAGCTCTA | 58.241 | 39.130 | 0.00 | 0.00 | 39.25 | 2.43 |
1349 | 2544 | 7.554959 | TCTTCCTAAGTTGTAGTTCCATTCT | 57.445 | 36.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1357 | 2552 | 5.542635 | AGTTGTAGTTCCATTCTAGGTCACA | 59.457 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1370 | 2577 | 6.428083 | TCTAGGTCACAATGTTAGAACCAA | 57.572 | 37.500 | 6.73 | 0.00 | 0.00 | 3.67 |
1419 | 2626 | 4.415881 | TGTGGCTCATGTAACGGATAAT | 57.584 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
1433 | 2640 | 7.766738 | TGTAACGGATAATATCTTGAGCACAAA | 59.233 | 33.333 | 0.00 | 0.00 | 35.49 | 2.83 |
1437 | 2644 | 6.703607 | CGGATAATATCTTGAGCACAAAGAGT | 59.296 | 38.462 | 0.00 | 0.00 | 35.49 | 3.24 |
1522 | 2729 | 2.031919 | ACAAATCTGTCGCCCGCA | 59.968 | 55.556 | 0.00 | 0.00 | 0.00 | 5.69 |
1609 | 2816 | 0.260230 | TTCTCCTGCCGATCTCCTCT | 59.740 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1611 | 2818 | 1.707989 | TCTCCTGCCGATCTCCTCTAT | 59.292 | 52.381 | 0.00 | 0.00 | 0.00 | 1.98 |
1707 | 2918 | 4.634004 | CGCAATATGAGGTTTGGTGAACTA | 59.366 | 41.667 | 0.00 | 0.00 | 38.35 | 2.24 |
1727 | 2938 | 3.914426 | AGACATACCCAACATCCTCAC | 57.086 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
2156 | 5287 | 4.049186 | CCTCCGTTCCATATTAAGTGTCG | 58.951 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
2298 | 5437 | 9.766277 | TTGCATTCAGTTTGTAAATTGTTTTTC | 57.234 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
2329 | 5470 | 0.185901 | TTGGGTTCTGCCAGAAAGCT | 59.814 | 50.000 | 9.08 | 0.00 | 35.75 | 3.74 |
2421 | 5563 | 8.526978 | TGTGATTTAGCTTGGCAATGTTTATTA | 58.473 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
2724 | 5870 | 0.326264 | GCTGTGGTGTCTTGGATCCT | 59.674 | 55.000 | 14.23 | 0.00 | 0.00 | 3.24 |
2795 | 5941 | 5.530171 | CACATATCACTGAAGAATTGGGGAG | 59.470 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2893 | 6108 | 9.860898 | GTTTGCAAATCCTCTGAACTATAATTT | 57.139 | 29.630 | 16.21 | 0.00 | 0.00 | 1.82 |
2937 | 6152 | 6.882610 | TTGAATTGAAGCTATGTGAAGTGT | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
3015 | 6232 | 7.124901 | TGGATTGGGATAAGCTCATAGATACTC | 59.875 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
3016 | 6233 | 6.859112 | TTGGGATAAGCTCATAGATACTCC | 57.141 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3017 | 6234 | 5.273208 | TGGGATAAGCTCATAGATACTCCC | 58.727 | 45.833 | 0.00 | 0.00 | 40.22 | 4.30 |
3018 | 6235 | 5.016782 | TGGGATAAGCTCATAGATACTCCCT | 59.983 | 44.000 | 11.20 | 0.00 | 40.41 | 4.20 |
3019 | 6236 | 5.596772 | GGGATAAGCTCATAGATACTCCCTC | 59.403 | 48.000 | 0.00 | 0.00 | 37.43 | 4.30 |
3020 | 6237 | 5.596772 | GGATAAGCTCATAGATACTCCCTCC | 59.403 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3021 | 6238 | 3.080300 | AGCTCATAGATACTCCCTCCG | 57.920 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
3022 | 6239 | 2.377193 | AGCTCATAGATACTCCCTCCGT | 59.623 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3023 | 6240 | 2.750712 | GCTCATAGATACTCCCTCCGTC | 59.249 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
3024 | 6241 | 3.349022 | CTCATAGATACTCCCTCCGTCC | 58.651 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
3025 | 6242 | 2.085320 | CATAGATACTCCCTCCGTCCG | 58.915 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
3026 | 6243 | 1.427809 | TAGATACTCCCTCCGTCCGA | 58.572 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
3027 | 6244 | 0.549950 | AGATACTCCCTCCGTCCGAA | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3028 | 6245 | 1.064166 | AGATACTCCCTCCGTCCGAAA | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
3029 | 6246 | 1.753073 | GATACTCCCTCCGTCCGAAAA | 59.247 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
3030 | 6247 | 1.856629 | TACTCCCTCCGTCCGAAAAT | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3031 | 6248 | 1.856629 | ACTCCCTCCGTCCGAAAATA | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3032 | 6249 | 1.479730 | ACTCCCTCCGTCCGAAAATAC | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
3033 | 6250 | 1.755380 | CTCCCTCCGTCCGAAAATACT | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
3034 | 6251 | 2.167900 | CTCCCTCCGTCCGAAAATACTT | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3035 | 6252 | 3.364549 | TCCCTCCGTCCGAAAATACTTA | 58.635 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3036 | 6253 | 3.962718 | TCCCTCCGTCCGAAAATACTTAT | 59.037 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
3037 | 6254 | 4.038402 | TCCCTCCGTCCGAAAATACTTATC | 59.962 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
3038 | 6255 | 4.038883 | CCCTCCGTCCGAAAATACTTATCT | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
3039 | 6256 | 4.982916 | CCTCCGTCCGAAAATACTTATCTG | 59.017 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
3040 | 6257 | 5.221185 | CCTCCGTCCGAAAATACTTATCTGA | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3041 | 6258 | 5.828747 | TCCGTCCGAAAATACTTATCTGAG | 58.171 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
3042 | 6259 | 4.982916 | CCGTCCGAAAATACTTATCTGAGG | 59.017 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
3043 | 6260 | 5.221185 | CCGTCCGAAAATACTTATCTGAGGA | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3044 | 6261 | 6.270815 | CGTCCGAAAATACTTATCTGAGGAA | 58.729 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3045 | 6262 | 6.924060 | CGTCCGAAAATACTTATCTGAGGAAT | 59.076 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3046 | 6263 | 7.096023 | CGTCCGAAAATACTTATCTGAGGAATG | 60.096 | 40.741 | 0.00 | 0.00 | 0.00 | 2.67 |
3047 | 6264 | 7.171678 | GTCCGAAAATACTTATCTGAGGAATGG | 59.828 | 40.741 | 0.00 | 0.00 | 0.00 | 3.16 |
3048 | 6265 | 7.070696 | TCCGAAAATACTTATCTGAGGAATGGA | 59.929 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
3049 | 6266 | 7.880195 | CCGAAAATACTTATCTGAGGAATGGAT | 59.120 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
3050 | 6267 | 8.715998 | CGAAAATACTTATCTGAGGAATGGATG | 58.284 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3051 | 6268 | 9.566432 | GAAAATACTTATCTGAGGAATGGATGT | 57.434 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
3061 | 6278 | 8.267620 | TCTGAGGAATGGATGTATTTAGATGT | 57.732 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
3062 | 6279 | 9.379770 | TCTGAGGAATGGATGTATTTAGATGTA | 57.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3103 | 6320 | 9.241919 | ACACCATTTGTATTCATTTCTATGACA | 57.758 | 29.630 | 0.00 | 0.00 | 37.29 | 3.58 |
3114 | 6331 | 7.786178 | TCATTTCTATGACAAGTATTTCCGG | 57.214 | 36.000 | 0.00 | 0.00 | 35.87 | 5.14 |
3115 | 6332 | 7.561251 | TCATTTCTATGACAAGTATTTCCGGA | 58.439 | 34.615 | 0.00 | 0.00 | 35.87 | 5.14 |
3116 | 6333 | 7.494625 | TCATTTCTATGACAAGTATTTCCGGAC | 59.505 | 37.037 | 1.83 | 0.00 | 35.87 | 4.79 |
3117 | 6334 | 5.925506 | TCTATGACAAGTATTTCCGGACA | 57.074 | 39.130 | 1.83 | 0.00 | 0.00 | 4.02 |
3118 | 6335 | 5.902681 | TCTATGACAAGTATTTCCGGACAG | 58.097 | 41.667 | 1.83 | 0.00 | 0.00 | 3.51 |
3119 | 6336 | 4.819105 | ATGACAAGTATTTCCGGACAGA | 57.181 | 40.909 | 1.83 | 0.00 | 0.00 | 3.41 |
3120 | 6337 | 4.188247 | TGACAAGTATTTCCGGACAGAG | 57.812 | 45.455 | 1.83 | 0.00 | 0.00 | 3.35 |
3121 | 6338 | 3.056107 | TGACAAGTATTTCCGGACAGAGG | 60.056 | 47.826 | 1.83 | 0.00 | 0.00 | 3.69 |
3122 | 6339 | 2.236395 | ACAAGTATTTCCGGACAGAGGG | 59.764 | 50.000 | 1.83 | 0.00 | 0.00 | 4.30 |
3123 | 6340 | 2.500098 | CAAGTATTTCCGGACAGAGGGA | 59.500 | 50.000 | 1.83 | 0.00 | 0.00 | 4.20 |
3124 | 6341 | 2.389715 | AGTATTTCCGGACAGAGGGAG | 58.610 | 52.381 | 1.83 | 0.00 | 33.01 | 4.30 |
3125 | 6342 | 2.108970 | GTATTTCCGGACAGAGGGAGT | 58.891 | 52.381 | 1.83 | 0.00 | 33.01 | 3.85 |
3126 | 6343 | 2.544844 | ATTTCCGGACAGAGGGAGTA | 57.455 | 50.000 | 1.83 | 0.00 | 33.01 | 2.59 |
3207 | 6424 | 7.227512 | GCTCACTTAATCTTTATGCATACCAGT | 59.772 | 37.037 | 5.74 | 0.00 | 0.00 | 4.00 |
3208 | 6425 | 8.437360 | TCACTTAATCTTTATGCATACCAGTG | 57.563 | 34.615 | 5.74 | 10.35 | 0.00 | 3.66 |
3248 | 6465 | 4.782252 | AATGCATTGCAATGATTTACGC | 57.218 | 36.364 | 37.36 | 22.67 | 43.62 | 4.42 |
3249 | 6466 | 3.227810 | TGCATTGCAATGATTTACGCA | 57.772 | 38.095 | 37.36 | 24.78 | 38.70 | 5.24 |
3310 | 6544 | 2.416893 | GGAGCTCGACACTTTGAATTCC | 59.583 | 50.000 | 7.83 | 0.00 | 0.00 | 3.01 |
3332 | 6566 | 6.830912 | TCCCATTACAAAGAATCGATCATCT | 58.169 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3357 | 6591 | 2.028203 | ACGATGGCTGGGGAAAATTTTG | 60.028 | 45.455 | 8.47 | 0.00 | 0.00 | 2.44 |
3358 | 6592 | 2.233431 | CGATGGCTGGGGAAAATTTTGA | 59.767 | 45.455 | 8.47 | 0.00 | 0.00 | 2.69 |
3417 | 6651 | 1.816074 | TACTTCCATTGGTTGGCGAC | 58.184 | 50.000 | 1.86 | 0.00 | 46.01 | 5.19 |
3435 | 6669 | 3.823330 | GGTGTCGGCGAGGTCGAT | 61.823 | 66.667 | 11.20 | 0.00 | 42.90 | 3.59 |
3436 | 6670 | 2.579787 | GTGTCGGCGAGGTCGATG | 60.580 | 66.667 | 11.20 | 0.00 | 42.90 | 3.84 |
3462 | 6696 | 2.042162 | TCTAGGAGTAACCCCACTCGTT | 59.958 | 50.000 | 4.06 | 0.00 | 44.93 | 3.85 |
3463 | 6697 | 0.974383 | AGGAGTAACCCCACTCGTTG | 59.026 | 55.000 | 0.00 | 0.00 | 44.93 | 4.10 |
3464 | 6698 | 0.683412 | GGAGTAACCCCACTCGTTGT | 59.317 | 55.000 | 0.00 | 0.00 | 44.93 | 3.32 |
3475 | 6709 | 0.315886 | ACTCGTTGTCGTACCATGCA | 59.684 | 50.000 | 0.00 | 0.00 | 38.33 | 3.96 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
96 | 117 | 2.162906 | AAGGGATGGTGTGGTGGCT | 61.163 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
184 | 221 | 3.733709 | GCATATTAGCCCAGGCAGT | 57.266 | 52.632 | 12.03 | 0.00 | 44.88 | 4.40 |
230 | 267 | 0.899720 | AATTAAGTCCGTCTCCCGCA | 59.100 | 50.000 | 0.00 | 0.00 | 34.38 | 5.69 |
243 | 280 | 3.599514 | CGCACGAACAGAAGCAAATTAAG | 59.400 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
246 | 283 | 1.334960 | CCGCACGAACAGAAGCAAATT | 60.335 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
300 | 383 | 3.964031 | ACTTCTCAACAGACAGACTCCTT | 59.036 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
363 | 646 | 6.469533 | GGGAGGAGATTATTAGAGGAGAGGAA | 60.470 | 46.154 | 0.00 | 0.00 | 0.00 | 3.36 |
364 | 647 | 5.015817 | GGGAGGAGATTATTAGAGGAGAGGA | 59.984 | 48.000 | 0.00 | 0.00 | 0.00 | 3.71 |
365 | 648 | 5.016245 | AGGGAGGAGATTATTAGAGGAGAGG | 59.984 | 48.000 | 0.00 | 0.00 | 0.00 | 3.69 |
366 | 649 | 6.152638 | AGGGAGGAGATTATTAGAGGAGAG | 57.847 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
367 | 650 | 6.553554 | AAGGGAGGAGATTATTAGAGGAGA | 57.446 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
368 | 651 | 7.071824 | ACAAAAGGGAGGAGATTATTAGAGGAG | 59.928 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
369 | 652 | 6.909158 | ACAAAAGGGAGGAGATTATTAGAGGA | 59.091 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
370 | 653 | 7.142995 | ACAAAAGGGAGGAGATTATTAGAGG | 57.857 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
371 | 654 | 8.371699 | CCTACAAAAGGGAGGAGATTATTAGAG | 58.628 | 40.741 | 0.00 | 0.00 | 42.32 | 2.43 |
372 | 655 | 8.071854 | TCCTACAAAAGGGAGGAGATTATTAGA | 58.928 | 37.037 | 0.00 | 0.00 | 46.55 | 2.10 |
373 | 656 | 8.263854 | TCCTACAAAAGGGAGGAGATTATTAG | 57.736 | 38.462 | 0.00 | 0.00 | 46.55 | 1.73 |
374 | 657 | 8.632731 | TTCCTACAAAAGGGAGGAGATTATTA | 57.367 | 34.615 | 0.00 | 0.00 | 46.55 | 0.98 |
375 | 658 | 7.525158 | TTCCTACAAAAGGGAGGAGATTATT | 57.475 | 36.000 | 0.00 | 0.00 | 46.55 | 1.40 |
376 | 659 | 7.713704 | ATTCCTACAAAAGGGAGGAGATTAT | 57.286 | 36.000 | 0.00 | 0.00 | 46.55 | 1.28 |
377 | 660 | 7.036863 | ACAATTCCTACAAAAGGGAGGAGATTA | 60.037 | 37.037 | 0.00 | 0.00 | 46.55 | 1.75 |
378 | 661 | 6.190587 | CAATTCCTACAAAAGGGAGGAGATT | 58.809 | 40.000 | 0.00 | 0.00 | 46.55 | 2.40 |
379 | 662 | 5.254032 | ACAATTCCTACAAAAGGGAGGAGAT | 59.746 | 40.000 | 0.00 | 0.00 | 46.55 | 2.75 |
380 | 663 | 4.601857 | ACAATTCCTACAAAAGGGAGGAGA | 59.398 | 41.667 | 0.00 | 0.00 | 46.55 | 3.71 |
381 | 664 | 4.702131 | CACAATTCCTACAAAAGGGAGGAG | 59.298 | 45.833 | 0.00 | 0.00 | 46.55 | 3.69 |
382 | 665 | 4.662278 | CACAATTCCTACAAAAGGGAGGA | 58.338 | 43.478 | 0.00 | 0.00 | 46.55 | 3.71 |
383 | 666 | 3.193479 | GCACAATTCCTACAAAAGGGAGG | 59.807 | 47.826 | 0.00 | 0.00 | 46.55 | 4.30 |
384 | 667 | 3.826157 | TGCACAATTCCTACAAAAGGGAG | 59.174 | 43.478 | 0.00 | 0.00 | 46.55 | 4.30 |
385 | 668 | 3.838565 | TGCACAATTCCTACAAAAGGGA | 58.161 | 40.909 | 0.00 | 0.00 | 46.55 | 4.20 |
386 | 669 | 4.599047 | TTGCACAATTCCTACAAAAGGG | 57.401 | 40.909 | 0.00 | 0.00 | 46.55 | 3.95 |
421 | 704 | 4.206244 | AGATGTGCCCTAGACCTATCTT | 57.794 | 45.455 | 0.00 | 0.00 | 36.29 | 2.40 |
427 | 710 | 4.142049 | GCATATCTAGATGTGCCCTAGACC | 60.142 | 50.000 | 32.93 | 11.84 | 46.14 | 3.85 |
428 | 711 | 5.004922 | GCATATCTAGATGTGCCCTAGAC | 57.995 | 47.826 | 32.93 | 12.44 | 46.14 | 2.59 |
445 | 728 | 9.650539 | CTTAGATGTGCAATAACTAGAGCATAT | 57.349 | 33.333 | 0.00 | 2.60 | 40.71 | 1.78 |
446 | 729 | 8.642432 | ACTTAGATGTGCAATAACTAGAGCATA | 58.358 | 33.333 | 0.00 | 0.00 | 39.43 | 3.14 |
447 | 730 | 7.440556 | CACTTAGATGTGCAATAACTAGAGCAT | 59.559 | 37.037 | 0.00 | 0.00 | 39.43 | 3.79 |
448 | 731 | 6.758416 | CACTTAGATGTGCAATAACTAGAGCA | 59.242 | 38.462 | 0.00 | 0.00 | 34.10 | 4.26 |
449 | 732 | 6.980978 | TCACTTAGATGTGCAATAACTAGAGC | 59.019 | 38.462 | 0.00 | 0.00 | 37.81 | 4.09 |
450 | 733 | 8.194104 | ACTCACTTAGATGTGCAATAACTAGAG | 58.806 | 37.037 | 0.00 | 0.00 | 37.81 | 2.43 |
451 | 734 | 7.976175 | CACTCACTTAGATGTGCAATAACTAGA | 59.024 | 37.037 | 0.00 | 0.00 | 37.81 | 2.43 |
452 | 735 | 7.976175 | TCACTCACTTAGATGTGCAATAACTAG | 59.024 | 37.037 | 0.00 | 0.00 | 37.81 | 2.57 |
453 | 736 | 7.836842 | TCACTCACTTAGATGTGCAATAACTA | 58.163 | 34.615 | 0.00 | 0.00 | 37.81 | 2.24 |
454 | 737 | 6.701340 | TCACTCACTTAGATGTGCAATAACT | 58.299 | 36.000 | 0.00 | 0.00 | 37.81 | 2.24 |
455 | 738 | 6.968131 | TCACTCACTTAGATGTGCAATAAC | 57.032 | 37.500 | 0.00 | 0.00 | 37.81 | 1.89 |
456 | 739 | 7.823799 | TGATTCACTCACTTAGATGTGCAATAA | 59.176 | 33.333 | 0.00 | 0.00 | 37.81 | 1.40 |
457 | 740 | 7.330262 | TGATTCACTCACTTAGATGTGCAATA | 58.670 | 34.615 | 0.00 | 0.00 | 37.81 | 1.90 |
458 | 741 | 6.175471 | TGATTCACTCACTTAGATGTGCAAT | 58.825 | 36.000 | 0.00 | 0.00 | 37.81 | 3.56 |
459 | 742 | 5.550290 | TGATTCACTCACTTAGATGTGCAA | 58.450 | 37.500 | 0.00 | 0.00 | 37.81 | 4.08 |
460 | 743 | 5.151297 | TGATTCACTCACTTAGATGTGCA | 57.849 | 39.130 | 0.00 | 0.00 | 37.81 | 4.57 |
461 | 744 | 5.447010 | GCTTGATTCACTCACTTAGATGTGC | 60.447 | 44.000 | 0.00 | 0.00 | 37.81 | 4.57 |
462 | 745 | 5.640783 | TGCTTGATTCACTCACTTAGATGTG | 59.359 | 40.000 | 0.00 | 0.00 | 39.15 | 3.21 |
463 | 746 | 5.798132 | TGCTTGATTCACTCACTTAGATGT | 58.202 | 37.500 | 0.00 | 0.00 | 32.17 | 3.06 |
464 | 747 | 6.922247 | ATGCTTGATTCACTCACTTAGATG | 57.078 | 37.500 | 0.00 | 0.00 | 32.17 | 2.90 |
465 | 748 | 9.107177 | CTTTATGCTTGATTCACTCACTTAGAT | 57.893 | 33.333 | 0.00 | 0.00 | 32.17 | 1.98 |
466 | 749 | 8.314021 | TCTTTATGCTTGATTCACTCACTTAGA | 58.686 | 33.333 | 0.00 | 0.00 | 32.17 | 2.10 |
467 | 750 | 8.484641 | TCTTTATGCTTGATTCACTCACTTAG | 57.515 | 34.615 | 0.00 | 0.00 | 32.17 | 2.18 |
468 | 751 | 7.550551 | CCTCTTTATGCTTGATTCACTCACTTA | 59.449 | 37.037 | 0.00 | 0.00 | 32.17 | 2.24 |
469 | 752 | 6.373774 | CCTCTTTATGCTTGATTCACTCACTT | 59.626 | 38.462 | 0.00 | 0.00 | 32.17 | 3.16 |
470 | 753 | 5.879223 | CCTCTTTATGCTTGATTCACTCACT | 59.121 | 40.000 | 0.00 | 0.00 | 32.17 | 3.41 |
471 | 754 | 5.877012 | TCCTCTTTATGCTTGATTCACTCAC | 59.123 | 40.000 | 0.00 | 0.00 | 32.17 | 3.51 |
472 | 755 | 6.053632 | TCCTCTTTATGCTTGATTCACTCA | 57.946 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
473 | 756 | 6.992063 | TTCCTCTTTATGCTTGATTCACTC | 57.008 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
474 | 757 | 7.170965 | TCTTTCCTCTTTATGCTTGATTCACT | 58.829 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
475 | 758 | 7.383102 | TCTTTCCTCTTTATGCTTGATTCAC | 57.617 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
476 | 759 | 8.408043 | TTTCTTTCCTCTTTATGCTTGATTCA | 57.592 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
477 | 760 | 9.696917 | TTTTTCTTTCCTCTTTATGCTTGATTC | 57.303 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
501 | 784 | 9.810545 | TCGTGTGGATATTTTCTTTTTCTTTTT | 57.189 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
502 | 785 | 9.810545 | TTCGTGTGGATATTTTCTTTTTCTTTT | 57.189 | 25.926 | 0.00 | 0.00 | 0.00 | 2.27 |
503 | 786 | 9.981114 | ATTCGTGTGGATATTTTCTTTTTCTTT | 57.019 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
504 | 787 | 9.626045 | GATTCGTGTGGATATTTTCTTTTTCTT | 57.374 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
505 | 788 | 8.792633 | TGATTCGTGTGGATATTTTCTTTTTCT | 58.207 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
506 | 789 | 8.850452 | GTGATTCGTGTGGATATTTTCTTTTTC | 58.150 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
507 | 790 | 8.356657 | TGTGATTCGTGTGGATATTTTCTTTTT | 58.643 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
508 | 791 | 7.881142 | TGTGATTCGTGTGGATATTTTCTTTT | 58.119 | 30.769 | 0.00 | 0.00 | 0.00 | 2.27 |
509 | 792 | 7.447374 | TGTGATTCGTGTGGATATTTTCTTT | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
510 | 793 | 7.447374 | TTGTGATTCGTGTGGATATTTTCTT | 57.553 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
511 | 794 | 7.121168 | ACATTGTGATTCGTGTGGATATTTTCT | 59.879 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
512 | 795 | 7.250569 | ACATTGTGATTCGTGTGGATATTTTC | 58.749 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
513 | 796 | 7.156876 | ACATTGTGATTCGTGTGGATATTTT | 57.843 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
514 | 797 | 6.757897 | ACATTGTGATTCGTGTGGATATTT | 57.242 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
515 | 798 | 7.768582 | TCTTACATTGTGATTCGTGTGGATATT | 59.231 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
516 | 799 | 7.272244 | TCTTACATTGTGATTCGTGTGGATAT | 58.728 | 34.615 | 0.00 | 0.00 | 0.00 | 1.63 |
517 | 800 | 6.635755 | TCTTACATTGTGATTCGTGTGGATA | 58.364 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
518 | 801 | 5.487433 | TCTTACATTGTGATTCGTGTGGAT | 58.513 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
519 | 802 | 4.888917 | TCTTACATTGTGATTCGTGTGGA | 58.111 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
520 | 803 | 5.351189 | TGATCTTACATTGTGATTCGTGTGG | 59.649 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
521 | 804 | 6.407475 | TGATCTTACATTGTGATTCGTGTG | 57.593 | 37.500 | 0.00 | 0.00 | 0.00 | 3.82 |
522 | 805 | 7.334171 | TCATTGATCTTACATTGTGATTCGTGT | 59.666 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
523 | 806 | 7.637519 | GTCATTGATCTTACATTGTGATTCGTG | 59.362 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
524 | 807 | 7.334171 | TGTCATTGATCTTACATTGTGATTCGT | 59.666 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
525 | 808 | 7.687445 | TGTCATTGATCTTACATTGTGATTCG | 58.313 | 34.615 | 0.00 | 0.00 | 0.00 | 3.34 |
529 | 812 | 9.889128 | TCTTATGTCATTGATCTTACATTGTGA | 57.111 | 29.630 | 0.00 | 0.00 | 34.54 | 3.58 |
530 | 813 | 9.926751 | GTCTTATGTCATTGATCTTACATTGTG | 57.073 | 33.333 | 0.00 | 0.00 | 34.54 | 3.33 |
531 | 814 | 9.896645 | AGTCTTATGTCATTGATCTTACATTGT | 57.103 | 29.630 | 0.00 | 0.00 | 34.54 | 2.71 |
539 | 822 | 9.761504 | CACATCTAAGTCTTATGTCATTGATCT | 57.238 | 33.333 | 0.00 | 0.00 | 31.60 | 2.75 |
540 | 823 | 8.494347 | GCACATCTAAGTCTTATGTCATTGATC | 58.506 | 37.037 | 0.00 | 0.00 | 31.60 | 2.92 |
541 | 824 | 7.989170 | TGCACATCTAAGTCTTATGTCATTGAT | 59.011 | 33.333 | 0.00 | 0.00 | 31.60 | 2.57 |
542 | 825 | 7.330262 | TGCACATCTAAGTCTTATGTCATTGA | 58.670 | 34.615 | 0.00 | 0.00 | 31.60 | 2.57 |
543 | 826 | 7.543947 | TGCACATCTAAGTCTTATGTCATTG | 57.456 | 36.000 | 0.00 | 0.00 | 31.60 | 2.82 |
544 | 827 | 8.743085 | ATTGCACATCTAAGTCTTATGTCATT | 57.257 | 30.769 | 0.00 | 0.00 | 31.60 | 2.57 |
545 | 828 | 9.265901 | GTATTGCACATCTAAGTCTTATGTCAT | 57.734 | 33.333 | 0.00 | 0.00 | 31.60 | 3.06 |
546 | 829 | 8.478066 | AGTATTGCACATCTAAGTCTTATGTCA | 58.522 | 33.333 | 0.00 | 0.00 | 31.60 | 3.58 |
547 | 830 | 8.879342 | AGTATTGCACATCTAAGTCTTATGTC | 57.121 | 34.615 | 0.00 | 0.00 | 31.60 | 3.06 |
551 | 834 | 9.764363 | CCATAAGTATTGCACATCTAAGTCTTA | 57.236 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
552 | 835 | 7.227512 | GCCATAAGTATTGCACATCTAAGTCTT | 59.772 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
553 | 836 | 6.708054 | GCCATAAGTATTGCACATCTAAGTCT | 59.292 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
554 | 837 | 6.483307 | TGCCATAAGTATTGCACATCTAAGTC | 59.517 | 38.462 | 0.00 | 0.00 | 30.49 | 3.01 |
555 | 838 | 6.356556 | TGCCATAAGTATTGCACATCTAAGT | 58.643 | 36.000 | 0.00 | 0.00 | 30.49 | 2.24 |
556 | 839 | 6.866010 | TGCCATAAGTATTGCACATCTAAG | 57.134 | 37.500 | 0.00 | 0.00 | 30.49 | 2.18 |
564 | 847 | 6.173427 | TCTAGATGTGCCATAAGTATTGCA | 57.827 | 37.500 | 0.00 | 0.00 | 32.69 | 4.08 |
565 | 848 | 7.069852 | CATCTAGATGTGCCATAAGTATTGC | 57.930 | 40.000 | 22.42 | 0.00 | 34.23 | 3.56 |
591 | 874 | 8.763049 | ATTTATCTTTTCAGTTTTGCTAAGGC | 57.237 | 30.769 | 0.00 | 0.00 | 39.26 | 4.35 |
596 | 879 | 9.822185 | ACAGAAATTTATCTTTTCAGTTTTGCT | 57.178 | 25.926 | 0.00 | 0.00 | 35.90 | 3.91 |
602 | 885 | 9.034544 | GCACAAACAGAAATTTATCTTTTCAGT | 57.965 | 29.630 | 0.00 | 0.00 | 35.23 | 3.41 |
603 | 886 | 8.209869 | CGCACAAACAGAAATTTATCTTTTCAG | 58.790 | 33.333 | 0.00 | 0.00 | 35.90 | 3.02 |
604 | 887 | 7.168972 | CCGCACAAACAGAAATTTATCTTTTCA | 59.831 | 33.333 | 0.00 | 0.00 | 35.90 | 2.69 |
605 | 888 | 7.501515 | CCGCACAAACAGAAATTTATCTTTTC | 58.498 | 34.615 | 0.00 | 0.00 | 34.08 | 2.29 |
606 | 889 | 6.073819 | GCCGCACAAACAGAAATTTATCTTTT | 60.074 | 34.615 | 0.00 | 0.00 | 0.00 | 2.27 |
607 | 890 | 5.405269 | GCCGCACAAACAGAAATTTATCTTT | 59.595 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
608 | 891 | 4.923281 | GCCGCACAAACAGAAATTTATCTT | 59.077 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
609 | 892 | 4.485163 | GCCGCACAAACAGAAATTTATCT | 58.515 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
610 | 893 | 3.300590 | CGCCGCACAAACAGAAATTTATC | 59.699 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
611 | 894 | 3.057876 | TCGCCGCACAAACAGAAATTTAT | 60.058 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
612 | 895 | 2.290916 | TCGCCGCACAAACAGAAATTTA | 59.709 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
613 | 896 | 1.066303 | TCGCCGCACAAACAGAAATTT | 59.934 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
632 | 915 | 0.322906 | CCTCCTTTTGGACAGCCCTC | 60.323 | 60.000 | 0.00 | 0.00 | 45.19 | 4.30 |
797 | 1892 | 3.118665 | CCGGCAAAAATCAAATCAGGGAT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
820 | 1915 | 2.742053 | GCGCAACAAAGGAGACTAATCA | 59.258 | 45.455 | 0.30 | 0.00 | 42.68 | 2.57 |
835 | 1930 | 0.028902 | CTTATTTAGGCCGGCGCAAC | 59.971 | 55.000 | 22.54 | 6.29 | 36.38 | 4.17 |
1161 | 2353 | 0.236711 | CAGCAGCGTCTTTGTTGAGG | 59.763 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1271 | 2466 | 2.742856 | CGCTTTGATAGGATGCAGGTCA | 60.743 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1287 | 2482 | 4.331168 | GTGTAGAGCTTCATCATTCGCTTT | 59.669 | 41.667 | 0.00 | 0.00 | 31.96 | 3.51 |
1349 | 2544 | 5.931294 | TGTTGGTTCTAACATTGTGACCTA | 58.069 | 37.500 | 11.03 | 3.96 | 35.75 | 3.08 |
1357 | 2552 | 8.635765 | ACATATTCACTGTTGGTTCTAACATT | 57.364 | 30.769 | 2.52 | 0.00 | 39.60 | 2.71 |
1370 | 2577 | 5.620206 | TGTTGGTTCTGACATATTCACTGT | 58.380 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
1379 | 2586 | 3.378112 | CACAACACTGTTGGTTCTGACAT | 59.622 | 43.478 | 22.91 | 0.00 | 31.64 | 3.06 |
1419 | 2626 | 3.368427 | CCGGACTCTTTGTGCTCAAGATA | 60.368 | 47.826 | 0.00 | 0.00 | 34.66 | 1.98 |
1433 | 2640 | 2.166907 | AATGGTGATCTCCGGACTCT | 57.833 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1437 | 2644 | 1.788229 | TGCTAATGGTGATCTCCGGA | 58.212 | 50.000 | 2.93 | 2.93 | 0.00 | 5.14 |
1505 | 2712 | 2.031919 | TGCGGGCGACAGATTTGT | 59.968 | 55.556 | 0.00 | 0.00 | 41.18 | 2.83 |
1522 | 2729 | 0.185901 | ACCTTCTGTGTTGCCATGGT | 59.814 | 50.000 | 14.67 | 0.00 | 0.00 | 3.55 |
1609 | 2816 | 4.190772 | TCATTGAACTGCTTCGCATGATA | 58.809 | 39.130 | 0.00 | 0.00 | 38.13 | 2.15 |
1611 | 2818 | 2.425539 | TCATTGAACTGCTTCGCATGA | 58.574 | 42.857 | 0.00 | 0.00 | 38.13 | 3.07 |
1649 | 2857 | 1.305465 | AGGCCAGCAAATGCATCCA | 60.305 | 52.632 | 5.01 | 0.00 | 45.16 | 3.41 |
1707 | 2918 | 2.505819 | GGTGAGGATGTTGGGTATGTCT | 59.494 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1727 | 2938 | 0.879765 | CTCCAAGAGCTTGCAAGTGG | 59.120 | 55.000 | 26.55 | 24.01 | 39.16 | 4.00 |
2329 | 5470 | 2.999648 | AGGCCTGAGCAGCTTCGA | 61.000 | 61.111 | 3.11 | 0.00 | 42.56 | 3.71 |
2421 | 5563 | 1.675641 | GGGACGGTGCAGCTTCAAT | 60.676 | 57.895 | 21.92 | 0.00 | 0.00 | 2.57 |
2690 | 5836 | 0.898320 | ACAGCGCAGACATACCTTCT | 59.102 | 50.000 | 11.47 | 0.00 | 0.00 | 2.85 |
2724 | 5870 | 2.959030 | CCTCGATGGGTACTTCATCTCA | 59.041 | 50.000 | 19.62 | 10.51 | 38.95 | 3.27 |
2795 | 5941 | 1.745653 | GAACCATAGCAGGCAAAGACC | 59.254 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2893 | 6108 | 7.534723 | TCAAAGGAAAGCAAGAGTACTACTA | 57.465 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3015 | 6232 | 2.685850 | AAGTATTTTCGGACGGAGGG | 57.314 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3016 | 6233 | 4.982916 | CAGATAAGTATTTTCGGACGGAGG | 59.017 | 45.833 | 0.00 | 0.00 | 31.01 | 4.30 |
3017 | 6234 | 5.828747 | TCAGATAAGTATTTTCGGACGGAG | 58.171 | 41.667 | 0.00 | 0.00 | 31.01 | 4.63 |
3018 | 6235 | 5.221185 | CCTCAGATAAGTATTTTCGGACGGA | 60.221 | 44.000 | 0.00 | 0.00 | 31.01 | 4.69 |
3019 | 6236 | 4.982916 | CCTCAGATAAGTATTTTCGGACGG | 59.017 | 45.833 | 0.00 | 0.00 | 31.01 | 4.79 |
3020 | 6237 | 5.828747 | TCCTCAGATAAGTATTTTCGGACG | 58.171 | 41.667 | 0.00 | 0.00 | 31.01 | 4.79 |
3021 | 6238 | 7.171678 | CCATTCCTCAGATAAGTATTTTCGGAC | 59.828 | 40.741 | 0.00 | 0.00 | 31.01 | 4.79 |
3022 | 6239 | 7.070696 | TCCATTCCTCAGATAAGTATTTTCGGA | 59.929 | 37.037 | 0.00 | 0.00 | 31.01 | 4.55 |
3023 | 6240 | 7.217200 | TCCATTCCTCAGATAAGTATTTTCGG | 58.783 | 38.462 | 0.00 | 0.00 | 31.01 | 4.30 |
3024 | 6241 | 8.715998 | CATCCATTCCTCAGATAAGTATTTTCG | 58.284 | 37.037 | 0.00 | 0.00 | 31.01 | 3.46 |
3025 | 6242 | 9.566432 | ACATCCATTCCTCAGATAAGTATTTTC | 57.434 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3035 | 6252 | 8.888419 | ACATCTAAATACATCCATTCCTCAGAT | 58.112 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3036 | 6253 | 8.267620 | ACATCTAAATACATCCATTCCTCAGA | 57.732 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
3077 | 6294 | 9.241919 | TGTCATAGAAATGAATACAAATGGTGT | 57.758 | 29.630 | 0.00 | 0.00 | 43.69 | 4.16 |
3088 | 6305 | 8.840321 | CCGGAAATACTTGTCATAGAAATGAAT | 58.160 | 33.333 | 0.00 | 0.00 | 43.69 | 2.57 |
3089 | 6306 | 8.044309 | TCCGGAAATACTTGTCATAGAAATGAA | 58.956 | 33.333 | 0.00 | 0.00 | 43.69 | 2.57 |
3090 | 6307 | 7.494625 | GTCCGGAAATACTTGTCATAGAAATGA | 59.505 | 37.037 | 5.23 | 0.00 | 39.87 | 2.57 |
3091 | 6308 | 7.279981 | TGTCCGGAAATACTTGTCATAGAAATG | 59.720 | 37.037 | 5.23 | 0.00 | 0.00 | 2.32 |
3092 | 6309 | 7.335627 | TGTCCGGAAATACTTGTCATAGAAAT | 58.664 | 34.615 | 5.23 | 0.00 | 0.00 | 2.17 |
3093 | 6310 | 6.703319 | TGTCCGGAAATACTTGTCATAGAAA | 58.297 | 36.000 | 5.23 | 0.00 | 0.00 | 2.52 |
3094 | 6311 | 6.153851 | TCTGTCCGGAAATACTTGTCATAGAA | 59.846 | 38.462 | 5.23 | 0.00 | 0.00 | 2.10 |
3095 | 6312 | 5.655090 | TCTGTCCGGAAATACTTGTCATAGA | 59.345 | 40.000 | 5.23 | 0.00 | 0.00 | 1.98 |
3096 | 6313 | 5.902681 | TCTGTCCGGAAATACTTGTCATAG | 58.097 | 41.667 | 5.23 | 0.00 | 0.00 | 2.23 |
3097 | 6314 | 5.163447 | CCTCTGTCCGGAAATACTTGTCATA | 60.163 | 44.000 | 5.23 | 0.00 | 0.00 | 2.15 |
3098 | 6315 | 4.383118 | CCTCTGTCCGGAAATACTTGTCAT | 60.383 | 45.833 | 5.23 | 0.00 | 0.00 | 3.06 |
3099 | 6316 | 3.056107 | CCTCTGTCCGGAAATACTTGTCA | 60.056 | 47.826 | 5.23 | 0.00 | 0.00 | 3.58 |
3100 | 6317 | 3.522553 | CCTCTGTCCGGAAATACTTGTC | 58.477 | 50.000 | 5.23 | 0.00 | 0.00 | 3.18 |
3101 | 6318 | 2.236395 | CCCTCTGTCCGGAAATACTTGT | 59.764 | 50.000 | 5.23 | 0.00 | 0.00 | 3.16 |
3102 | 6319 | 2.500098 | TCCCTCTGTCCGGAAATACTTG | 59.500 | 50.000 | 5.23 | 0.00 | 0.00 | 3.16 |
3103 | 6320 | 2.766828 | CTCCCTCTGTCCGGAAATACTT | 59.233 | 50.000 | 5.23 | 0.00 | 0.00 | 2.24 |
3104 | 6321 | 2.292323 | ACTCCCTCTGTCCGGAAATACT | 60.292 | 50.000 | 5.23 | 0.00 | 0.00 | 2.12 |
3105 | 6322 | 2.108970 | ACTCCCTCTGTCCGGAAATAC | 58.891 | 52.381 | 5.23 | 0.00 | 0.00 | 1.89 |
3106 | 6323 | 2.544844 | ACTCCCTCTGTCCGGAAATA | 57.455 | 50.000 | 5.23 | 0.00 | 0.00 | 1.40 |
3107 | 6324 | 2.544844 | TACTCCCTCTGTCCGGAAAT | 57.455 | 50.000 | 5.23 | 0.00 | 0.00 | 2.17 |
3108 | 6325 | 2.108168 | CATACTCCCTCTGTCCGGAAA | 58.892 | 52.381 | 5.23 | 0.00 | 0.00 | 3.13 |
3109 | 6326 | 1.006758 | ACATACTCCCTCTGTCCGGAA | 59.993 | 52.381 | 5.23 | 0.00 | 0.00 | 4.30 |
3110 | 6327 | 0.629596 | ACATACTCCCTCTGTCCGGA | 59.370 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3111 | 6328 | 0.747255 | CACATACTCCCTCTGTCCGG | 59.253 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3112 | 6329 | 0.747255 | CCACATACTCCCTCTGTCCG | 59.253 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3113 | 6330 | 0.466124 | GCCACATACTCCCTCTGTCC | 59.534 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3114 | 6331 | 1.137872 | CAGCCACATACTCCCTCTGTC | 59.862 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
3115 | 6332 | 1.198713 | CAGCCACATACTCCCTCTGT | 58.801 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3116 | 6333 | 0.179062 | GCAGCCACATACTCCCTCTG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3117 | 6334 | 0.618680 | TGCAGCCACATACTCCCTCT | 60.619 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3118 | 6335 | 0.471617 | ATGCAGCCACATACTCCCTC | 59.528 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3119 | 6336 | 0.182061 | CATGCAGCCACATACTCCCT | 59.818 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3120 | 6337 | 0.181114 | TCATGCAGCCACATACTCCC | 59.819 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3121 | 6338 | 1.590932 | CTCATGCAGCCACATACTCC | 58.409 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3122 | 6339 | 1.134280 | ACCTCATGCAGCCACATACTC | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
3123 | 6340 | 0.914644 | ACCTCATGCAGCCACATACT | 59.085 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3124 | 6341 | 1.755179 | AACCTCATGCAGCCACATAC | 58.245 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
3125 | 6342 | 3.643199 | TTAACCTCATGCAGCCACATA | 57.357 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
3126 | 6343 | 2.512692 | TTAACCTCATGCAGCCACAT | 57.487 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3221 | 6438 | 4.546829 | ATCATTGCAATGCATTATCCCC | 57.453 | 40.909 | 30.57 | 0.00 | 38.76 | 4.81 |
3268 | 6485 | 4.956075 | TCCCAACAGCTTCTTCTTTCTTTT | 59.044 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
3295 | 6529 | 5.621197 | TGTAATGGGAATTCAAAGTGTCG | 57.379 | 39.130 | 7.93 | 0.00 | 0.00 | 4.35 |
3310 | 6544 | 7.225341 | TCACAGATGATCGATTCTTTGTAATGG | 59.775 | 37.037 | 11.24 | 0.00 | 0.00 | 3.16 |
3332 | 6566 | 1.773856 | TTTCCCCAGCCATCGTCACA | 61.774 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
3357 | 6591 | 1.548269 | CCCTGTGAAGTGACTCCTCTC | 59.452 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
3358 | 6592 | 1.638529 | CCCTGTGAAGTGACTCCTCT | 58.361 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3385 | 6619 | 1.632948 | GGAAGTAAACGCCGGACAGC | 61.633 | 60.000 | 5.05 | 0.00 | 0.00 | 4.40 |
3386 | 6620 | 0.320073 | TGGAAGTAAACGCCGGACAG | 60.320 | 55.000 | 5.05 | 0.00 | 0.00 | 3.51 |
3387 | 6621 | 0.322322 | ATGGAAGTAAACGCCGGACA | 59.678 | 50.000 | 5.05 | 0.00 | 0.00 | 4.02 |
3388 | 6622 | 1.129811 | CAATGGAAGTAAACGCCGGAC | 59.870 | 52.381 | 5.05 | 0.00 | 0.00 | 4.79 |
3389 | 6623 | 1.444836 | CAATGGAAGTAAACGCCGGA | 58.555 | 50.000 | 5.05 | 0.00 | 0.00 | 5.14 |
3390 | 6624 | 0.450184 | CCAATGGAAGTAAACGCCGG | 59.550 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3391 | 6625 | 1.161843 | ACCAATGGAAGTAAACGCCG | 58.838 | 50.000 | 6.16 | 0.00 | 0.00 | 6.46 |
3435 | 6669 | 1.290130 | GGGGTTACTCCTAGAGGGTCA | 59.710 | 57.143 | 0.00 | 0.00 | 33.35 | 4.02 |
3436 | 6670 | 1.290130 | TGGGGTTACTCCTAGAGGGTC | 59.710 | 57.143 | 1.83 | 0.00 | 33.35 | 4.46 |
3444 | 6678 | 0.974383 | CAACGAGTGGGGTTACTCCT | 59.026 | 55.000 | 1.83 | 0.00 | 43.23 | 3.69 |
3462 | 6696 | 1.277842 | AGGTCATTGCATGGTACGACA | 59.722 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
3463 | 6697 | 2.024176 | AGGTCATTGCATGGTACGAC | 57.976 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3464 | 6698 | 2.779755 | AAGGTCATTGCATGGTACGA | 57.220 | 45.000 | 0.00 | 0.00 | 0.00 | 3.43 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.