Multiple sequence alignment - TraesCS2A01G344500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G344500 chr2A 100.000 6521 0 0 1 6521 581584095 581577575 0.000000e+00 12043
1 TraesCS2A01G344500 chr2D 95.299 5935 199 38 633 6521 414407807 414401907 0.000000e+00 9341
2 TraesCS2A01G344500 chr2B 95.178 3422 132 20 3112 6521 488012729 488009329 0.000000e+00 5374
3 TraesCS2A01G344500 chr2B 94.683 2351 84 15 774 3114 488020641 488018322 0.000000e+00 3611
4 TraesCS2A01G344500 chr2B 87.912 91 10 1 476 566 488020921 488020832 8.940000e-19 106
5 TraesCS2A01G344500 chr5A 92.537 402 30 0 6036 6437 641733850 641733449 1.580000e-160 577
6 TraesCS2A01G344500 chr5B 92.289 402 31 0 6036 6437 644890467 644890066 7.340000e-159 571
7 TraesCS2A01G344500 chr5D 92.269 401 31 0 6036 6436 513978961 513978561 2.640000e-158 569
8 TraesCS2A01G344500 chr4B 80.797 276 47 6 3248 3520 646273981 646274253 1.840000e-50 211
9 TraesCS2A01G344500 chr4B 80.797 276 47 5 3248 3520 646307552 646307824 1.840000e-50 211
10 TraesCS2A01G344500 chr4B 80.505 277 45 8 3248 3520 646360799 646361070 3.080000e-48 204
11 TraesCS2A01G344500 chr4B 80.072 276 49 6 3248 3520 646333506 646333778 3.990000e-47 200
12 TraesCS2A01G344500 chr6B 85.484 186 23 2 6037 6222 39324667 39324848 2.400000e-44 191
13 TraesCS2A01G344500 chrUn 82.524 206 33 3 3315 3520 478128764 478128562 1.870000e-40 178
14 TraesCS2A01G344500 chr3A 80.000 205 30 7 6011 6209 71235648 71235847 2.450000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G344500 chr2A 581577575 581584095 6520 True 12043.0 12043 100.0000 1 6521 1 chr2A.!!$R1 6520
1 TraesCS2A01G344500 chr2D 414401907 414407807 5900 True 9341.0 9341 95.2990 633 6521 1 chr2D.!!$R1 5888
2 TraesCS2A01G344500 chr2B 488009329 488012729 3400 True 5374.0 5374 95.1780 3112 6521 1 chr2B.!!$R1 3409
3 TraesCS2A01G344500 chr2B 488018322 488020921 2599 True 1858.5 3611 91.2975 476 3114 2 chr2B.!!$R2 2638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.111639 ACCACCGTATGCAAAACCCT 59.888 50.000 0.00 0.0 0.00 4.34 F
794 845 0.173708 ATCCCGCTCGTTCTTCTCAC 59.826 55.000 0.00 0.0 0.00 3.51 F
1317 1386 0.322456 CTCCCGCTTTGGTGGAATGA 60.322 55.000 0.00 0.0 45.39 2.57 F
1415 1484 1.348036 CCTCTCGGTCTGACCCTTTTT 59.652 52.381 20.68 0.0 33.75 1.94 F
1532 1601 1.451387 CCCGCCCCTAACATGTCAC 60.451 63.158 0.00 0.0 0.00 3.67 F
3577 3676 1.200716 GGTCGTGGTGTCGAGTTGATA 59.799 52.381 0.00 0.0 40.52 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1377 0.681243 GGAGGCAAGGTCATTCCACC 60.681 60.000 0.0 0.0 39.02 4.61 R
1705 1789 0.979665 TCTGCTCACTCTTTCCCTGG 59.020 55.000 0.0 0.0 0.00 4.45 R
2221 2305 3.806521 CCTGATCATTAAGACGCTTCTGG 59.193 47.826 0.0 0.0 29.98 3.86 R
3205 3304 6.236017 ACAATTACAACCATTACACAGACG 57.764 37.500 0.0 0.0 0.00 4.18 R
3715 3815 0.250209 CATCTTCCTGGGATGCCGAG 60.250 60.000 0.0 0.0 34.97 4.63 R
5542 5657 0.186873 ATGGATGGGATGGGACTTGC 59.813 55.000 0.0 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.595758 GGCAACACGCACAAGCCT 61.596 61.111 0.00 0.00 45.17 4.58
18 19 2.258013 GGCAACACGCACAAGCCTA 61.258 57.895 0.00 0.00 45.17 3.93
19 20 1.207593 GCAACACGCACAAGCCTAG 59.792 57.895 0.00 0.00 41.79 3.02
20 21 1.207593 CAACACGCACAAGCCTAGC 59.792 57.895 0.00 0.00 37.52 3.42
21 22 1.071471 AACACGCACAAGCCTAGCT 59.929 52.632 0.00 0.00 42.56 3.32
22 23 0.320374 AACACGCACAAGCCTAGCTA 59.680 50.000 0.00 0.00 38.25 3.32
23 24 0.389948 ACACGCACAAGCCTAGCTAC 60.390 55.000 0.00 0.00 38.25 3.58
24 25 1.084370 CACGCACAAGCCTAGCTACC 61.084 60.000 0.00 0.00 38.25 3.18
25 26 1.218047 CGCACAAGCCTAGCTACCA 59.782 57.895 0.00 0.00 38.25 3.25
26 27 1.084370 CGCACAAGCCTAGCTACCAC 61.084 60.000 0.00 0.00 38.25 4.16
27 28 0.744771 GCACAAGCCTAGCTACCACC 60.745 60.000 0.00 0.00 38.25 4.61
28 29 0.460284 CACAAGCCTAGCTACCACCG 60.460 60.000 0.00 0.00 38.25 4.94
29 30 0.903454 ACAAGCCTAGCTACCACCGT 60.903 55.000 0.00 0.00 38.25 4.83
30 31 1.108776 CAAGCCTAGCTACCACCGTA 58.891 55.000 0.00 0.00 38.25 4.02
31 32 1.687123 CAAGCCTAGCTACCACCGTAT 59.313 52.381 0.00 0.00 38.25 3.06
32 33 1.329256 AGCCTAGCTACCACCGTATG 58.671 55.000 0.00 0.00 36.99 2.39
33 34 0.319641 GCCTAGCTACCACCGTATGC 60.320 60.000 0.00 0.00 0.00 3.14
34 35 1.037493 CCTAGCTACCACCGTATGCA 58.963 55.000 0.00 0.00 0.00 3.96
35 36 1.411246 CCTAGCTACCACCGTATGCAA 59.589 52.381 0.00 0.00 0.00 4.08
36 37 2.159014 CCTAGCTACCACCGTATGCAAA 60.159 50.000 0.00 0.00 0.00 3.68
37 38 2.483014 AGCTACCACCGTATGCAAAA 57.517 45.000 0.00 0.00 0.00 2.44
38 39 2.081462 AGCTACCACCGTATGCAAAAC 58.919 47.619 0.00 0.00 0.00 2.43
39 40 1.131693 GCTACCACCGTATGCAAAACC 59.868 52.381 0.00 0.00 0.00 3.27
40 41 1.741145 CTACCACCGTATGCAAAACCC 59.259 52.381 0.00 0.00 0.00 4.11
41 42 0.111639 ACCACCGTATGCAAAACCCT 59.888 50.000 0.00 0.00 0.00 4.34
42 43 1.253100 CCACCGTATGCAAAACCCTT 58.747 50.000 0.00 0.00 0.00 3.95
43 44 1.201414 CCACCGTATGCAAAACCCTTC 59.799 52.381 0.00 0.00 0.00 3.46
44 45 1.883275 CACCGTATGCAAAACCCTTCA 59.117 47.619 0.00 0.00 0.00 3.02
45 46 2.491693 CACCGTATGCAAAACCCTTCAT 59.508 45.455 0.00 0.00 0.00 2.57
46 47 3.056891 CACCGTATGCAAAACCCTTCATT 60.057 43.478 0.00 0.00 0.00 2.57
47 48 3.576550 ACCGTATGCAAAACCCTTCATTT 59.423 39.130 0.00 0.00 0.00 2.32
48 49 4.767928 ACCGTATGCAAAACCCTTCATTTA 59.232 37.500 0.00 0.00 0.00 1.40
49 50 5.420739 ACCGTATGCAAAACCCTTCATTTAT 59.579 36.000 0.00 0.00 0.00 1.40
50 51 6.071051 ACCGTATGCAAAACCCTTCATTTATT 60.071 34.615 0.00 0.00 0.00 1.40
51 52 7.122948 ACCGTATGCAAAACCCTTCATTTATTA 59.877 33.333 0.00 0.00 0.00 0.98
52 53 7.976734 CCGTATGCAAAACCCTTCATTTATTAA 59.023 33.333 0.00 0.00 0.00 1.40
53 54 9.360093 CGTATGCAAAACCCTTCATTTATTAAA 57.640 29.630 0.00 0.00 0.00 1.52
77 78 8.814038 AATGAAGTTCATAATTAGGCTTGAGT 57.186 30.769 18.56 0.00 35.76 3.41
78 79 7.849804 TGAAGTTCATAATTAGGCTTGAGTC 57.150 36.000 0.08 0.00 0.00 3.36
79 80 7.624549 TGAAGTTCATAATTAGGCTTGAGTCT 58.375 34.615 0.08 0.00 0.00 3.24
80 81 7.766278 TGAAGTTCATAATTAGGCTTGAGTCTC 59.234 37.037 0.08 0.00 0.00 3.36
81 82 6.276847 AGTTCATAATTAGGCTTGAGTCTCG 58.723 40.000 0.00 0.00 0.00 4.04
82 83 6.096987 AGTTCATAATTAGGCTTGAGTCTCGA 59.903 38.462 0.00 0.00 0.00 4.04
83 84 5.833082 TCATAATTAGGCTTGAGTCTCGAC 58.167 41.667 0.00 0.00 0.00 4.20
84 85 3.528597 AATTAGGCTTGAGTCTCGACC 57.471 47.619 0.00 0.00 0.00 4.79
85 86 1.183549 TTAGGCTTGAGTCTCGACCC 58.816 55.000 0.00 0.00 0.00 4.46
86 87 0.331954 TAGGCTTGAGTCTCGACCCT 59.668 55.000 8.73 8.73 0.00 4.34
87 88 0.331954 AGGCTTGAGTCTCGACCCTA 59.668 55.000 2.39 0.00 0.00 3.53
88 89 1.183549 GGCTTGAGTCTCGACCCTAA 58.816 55.000 0.00 0.00 0.00 2.69
89 90 1.549170 GGCTTGAGTCTCGACCCTAAA 59.451 52.381 0.00 0.00 0.00 1.85
90 91 2.417515 GGCTTGAGTCTCGACCCTAAAG 60.418 54.545 0.00 0.92 0.00 1.85
91 92 2.492484 GCTTGAGTCTCGACCCTAAAGA 59.508 50.000 7.57 0.00 0.00 2.52
92 93 3.056749 GCTTGAGTCTCGACCCTAAAGAA 60.057 47.826 7.57 0.00 0.00 2.52
93 94 4.560919 GCTTGAGTCTCGACCCTAAAGAAA 60.561 45.833 7.57 0.00 0.00 2.52
94 95 5.539048 CTTGAGTCTCGACCCTAAAGAAAA 58.461 41.667 0.00 0.00 0.00 2.29
95 96 5.540400 TGAGTCTCGACCCTAAAGAAAAA 57.460 39.130 0.00 0.00 0.00 1.94
96 97 6.110411 TGAGTCTCGACCCTAAAGAAAAAT 57.890 37.500 0.00 0.00 0.00 1.82
97 98 7.235935 TGAGTCTCGACCCTAAAGAAAAATA 57.764 36.000 0.00 0.00 0.00 1.40
98 99 7.673180 TGAGTCTCGACCCTAAAGAAAAATAA 58.327 34.615 0.00 0.00 0.00 1.40
99 100 8.152246 TGAGTCTCGACCCTAAAGAAAAATAAA 58.848 33.333 0.00 0.00 0.00 1.40
100 101 8.549338 AGTCTCGACCCTAAAGAAAAATAAAG 57.451 34.615 0.00 0.00 0.00 1.85
101 102 8.373220 AGTCTCGACCCTAAAGAAAAATAAAGA 58.627 33.333 0.00 0.00 0.00 2.52
102 103 8.996271 GTCTCGACCCTAAAGAAAAATAAAGAA 58.004 33.333 0.00 0.00 0.00 2.52
103 104 9.563748 TCTCGACCCTAAAGAAAAATAAAGAAA 57.436 29.630 0.00 0.00 0.00 2.52
104 105 9.608617 CTCGACCCTAAAGAAAAATAAAGAAAC 57.391 33.333 0.00 0.00 0.00 2.78
105 106 8.570488 TCGACCCTAAAGAAAAATAAAGAAACC 58.430 33.333 0.00 0.00 0.00 3.27
106 107 7.811236 CGACCCTAAAGAAAAATAAAGAAACCC 59.189 37.037 0.00 0.00 0.00 4.11
107 108 8.555896 ACCCTAAAGAAAAATAAAGAAACCCA 57.444 30.769 0.00 0.00 0.00 4.51
108 109 8.994500 ACCCTAAAGAAAAATAAAGAAACCCAA 58.006 29.630 0.00 0.00 0.00 4.12
128 129 8.601845 ACCCAATAAGAACAAACAATAAAAGC 57.398 30.769 0.00 0.00 0.00 3.51
129 130 8.207545 ACCCAATAAGAACAAACAATAAAAGCA 58.792 29.630 0.00 0.00 0.00 3.91
130 131 9.050601 CCCAATAAGAACAAACAATAAAAGCAA 57.949 29.630 0.00 0.00 0.00 3.91
156 157 8.854979 AAAATAAAACCAAAGAAAAGCAATGC 57.145 26.923 0.00 0.00 0.00 3.56
157 158 7.565323 AATAAAACCAAAGAAAAGCAATGCA 57.435 28.000 8.35 0.00 0.00 3.96
158 159 5.893897 AAAACCAAAGAAAAGCAATGCAA 57.106 30.435 8.35 0.00 0.00 4.08
159 160 5.893897 AAACCAAAGAAAAGCAATGCAAA 57.106 30.435 8.35 0.00 0.00 3.68
160 161 5.893897 AACCAAAGAAAAGCAATGCAAAA 57.106 30.435 8.35 0.00 0.00 2.44
161 162 5.488645 ACCAAAGAAAAGCAATGCAAAAG 57.511 34.783 8.35 0.00 0.00 2.27
162 163 5.184711 ACCAAAGAAAAGCAATGCAAAAGA 58.815 33.333 8.35 0.00 0.00 2.52
163 164 5.647225 ACCAAAGAAAAGCAATGCAAAAGAA 59.353 32.000 8.35 0.00 0.00 2.52
164 165 6.319405 ACCAAAGAAAAGCAATGCAAAAGAAT 59.681 30.769 8.35 0.00 0.00 2.40
165 166 6.635239 CCAAAGAAAAGCAATGCAAAAGAATG 59.365 34.615 8.35 0.00 0.00 2.67
166 167 7.411274 CAAAGAAAAGCAATGCAAAAGAATGA 58.589 30.769 8.35 0.00 0.00 2.57
167 168 7.556733 AAGAAAAGCAATGCAAAAGAATGAA 57.443 28.000 8.35 0.00 0.00 2.57
168 169 7.556733 AGAAAAGCAATGCAAAAGAATGAAA 57.443 28.000 8.35 0.00 0.00 2.69
169 170 7.987649 AGAAAAGCAATGCAAAAGAATGAAAA 58.012 26.923 8.35 0.00 0.00 2.29
170 171 7.911727 AGAAAAGCAATGCAAAAGAATGAAAAC 59.088 29.630 8.35 0.00 0.00 2.43
171 172 6.680874 AAGCAATGCAAAAGAATGAAAACA 57.319 29.167 8.35 0.00 0.00 2.83
172 173 6.680874 AGCAATGCAAAAGAATGAAAACAA 57.319 29.167 8.35 0.00 0.00 2.83
173 174 7.086230 AGCAATGCAAAAGAATGAAAACAAA 57.914 28.000 8.35 0.00 0.00 2.83
174 175 7.190871 AGCAATGCAAAAGAATGAAAACAAAG 58.809 30.769 8.35 0.00 0.00 2.77
175 176 7.066043 AGCAATGCAAAAGAATGAAAACAAAGA 59.934 29.630 8.35 0.00 0.00 2.52
176 177 7.375017 GCAATGCAAAAGAATGAAAACAAAGAG 59.625 33.333 0.00 0.00 0.00 2.85
177 178 6.348621 TGCAAAAGAATGAAAACAAAGAGC 57.651 33.333 0.00 0.00 0.00 4.09
178 179 5.005586 TGCAAAAGAATGAAAACAAAGAGCG 59.994 36.000 0.00 0.00 0.00 5.03
179 180 5.556947 GCAAAAGAATGAAAACAAAGAGCGG 60.557 40.000 0.00 0.00 0.00 5.52
180 181 5.514274 AAAGAATGAAAACAAAGAGCGGA 57.486 34.783 0.00 0.00 0.00 5.54
181 182 4.756084 AGAATGAAAACAAAGAGCGGAG 57.244 40.909 0.00 0.00 0.00 4.63
182 183 4.389374 AGAATGAAAACAAAGAGCGGAGA 58.611 39.130 0.00 0.00 0.00 3.71
183 184 4.821805 AGAATGAAAACAAAGAGCGGAGAA 59.178 37.500 0.00 0.00 0.00 2.87
184 185 5.299279 AGAATGAAAACAAAGAGCGGAGAAA 59.701 36.000 0.00 0.00 0.00 2.52
185 186 4.552166 TGAAAACAAAGAGCGGAGAAAG 57.448 40.909 0.00 0.00 0.00 2.62
186 187 4.196193 TGAAAACAAAGAGCGGAGAAAGA 58.804 39.130 0.00 0.00 0.00 2.52
187 188 4.638421 TGAAAACAAAGAGCGGAGAAAGAA 59.362 37.500 0.00 0.00 0.00 2.52
188 189 5.124776 TGAAAACAAAGAGCGGAGAAAGAAA 59.875 36.000 0.00 0.00 0.00 2.52
189 190 4.553756 AACAAAGAGCGGAGAAAGAAAC 57.446 40.909 0.00 0.00 0.00 2.78
190 191 3.541632 ACAAAGAGCGGAGAAAGAAACA 58.458 40.909 0.00 0.00 0.00 2.83
191 192 3.945285 ACAAAGAGCGGAGAAAGAAACAA 59.055 39.130 0.00 0.00 0.00 2.83
192 193 4.398044 ACAAAGAGCGGAGAAAGAAACAAA 59.602 37.500 0.00 0.00 0.00 2.83
193 194 4.820284 AAGAGCGGAGAAAGAAACAAAG 57.180 40.909 0.00 0.00 0.00 2.77
194 195 4.073293 AGAGCGGAGAAAGAAACAAAGA 57.927 40.909 0.00 0.00 0.00 2.52
195 196 4.451900 AGAGCGGAGAAAGAAACAAAGAA 58.548 39.130 0.00 0.00 0.00 2.52
196 197 4.881850 AGAGCGGAGAAAGAAACAAAGAAA 59.118 37.500 0.00 0.00 0.00 2.52
197 198 5.357032 AGAGCGGAGAAAGAAACAAAGAAAA 59.643 36.000 0.00 0.00 0.00 2.29
198 199 6.039829 AGAGCGGAGAAAGAAACAAAGAAAAT 59.960 34.615 0.00 0.00 0.00 1.82
199 200 6.209361 AGCGGAGAAAGAAACAAAGAAAATC 58.791 36.000 0.00 0.00 0.00 2.17
200 201 5.115622 GCGGAGAAAGAAACAAAGAAAATCG 59.884 40.000 0.00 0.00 0.00 3.34
201 202 6.427150 CGGAGAAAGAAACAAAGAAAATCGA 58.573 36.000 0.00 0.00 0.00 3.59
202 203 7.078228 CGGAGAAAGAAACAAAGAAAATCGAT 58.922 34.615 0.00 0.00 0.00 3.59
203 204 7.059945 CGGAGAAAGAAACAAAGAAAATCGATG 59.940 37.037 0.00 0.00 0.00 3.84
204 205 8.076178 GGAGAAAGAAACAAAGAAAATCGATGA 58.924 33.333 0.00 0.00 0.00 2.92
205 206 9.450807 GAGAAAGAAACAAAGAAAATCGATGAA 57.549 29.630 0.00 0.00 0.00 2.57
206 207 9.801873 AGAAAGAAACAAAGAAAATCGATGAAA 57.198 25.926 0.00 0.00 0.00 2.69
210 211 9.748708 AGAAACAAAGAAAATCGATGAAAATCA 57.251 25.926 0.00 0.00 0.00 2.57
213 214 9.748708 AACAAAGAAAATCGATGAAAATCAAGA 57.251 25.926 0.00 0.00 0.00 3.02
214 215 9.748708 ACAAAGAAAATCGATGAAAATCAAGAA 57.251 25.926 0.00 0.00 0.00 2.52
221 222 9.748708 AAATCGATGAAAATCAAGAAAGAAACA 57.251 25.926 0.00 0.00 0.00 2.83
222 223 9.748708 AATCGATGAAAATCAAGAAAGAAACAA 57.251 25.926 0.00 0.00 0.00 2.83
223 224 9.748708 ATCGATGAAAATCAAGAAAGAAACAAA 57.251 25.926 0.00 0.00 0.00 2.83
224 225 9.236691 TCGATGAAAATCAAGAAAGAAACAAAG 57.763 29.630 0.00 0.00 0.00 2.77
225 226 9.236691 CGATGAAAATCAAGAAAGAAACAAAGA 57.763 29.630 0.00 0.00 0.00 2.52
264 265 8.456904 AAAAACAGTAAAACCGAGAAAGAAAC 57.543 30.769 0.00 0.00 0.00 2.78
265 266 6.746745 AACAGTAAAACCGAGAAAGAAACA 57.253 33.333 0.00 0.00 0.00 2.83
266 267 6.746745 ACAGTAAAACCGAGAAAGAAACAA 57.253 33.333 0.00 0.00 0.00 2.83
267 268 7.148355 ACAGTAAAACCGAGAAAGAAACAAA 57.852 32.000 0.00 0.00 0.00 2.83
268 269 7.248437 ACAGTAAAACCGAGAAAGAAACAAAG 58.752 34.615 0.00 0.00 0.00 2.77
269 270 6.691388 CAGTAAAACCGAGAAAGAAACAAAGG 59.309 38.462 0.00 0.00 0.00 3.11
270 271 4.649088 AAACCGAGAAAGAAACAAAGGG 57.351 40.909 0.00 0.00 0.00 3.95
271 272 2.583143 ACCGAGAAAGAAACAAAGGGG 58.417 47.619 0.00 0.00 0.00 4.79
272 273 2.173996 ACCGAGAAAGAAACAAAGGGGA 59.826 45.455 0.00 0.00 0.00 4.81
273 274 3.219281 CCGAGAAAGAAACAAAGGGGAA 58.781 45.455 0.00 0.00 0.00 3.97
274 275 3.634910 CCGAGAAAGAAACAAAGGGGAAA 59.365 43.478 0.00 0.00 0.00 3.13
275 276 4.098807 CCGAGAAAGAAACAAAGGGGAAAA 59.901 41.667 0.00 0.00 0.00 2.29
276 277 5.041287 CGAGAAAGAAACAAAGGGGAAAAC 58.959 41.667 0.00 0.00 0.00 2.43
277 278 5.393678 CGAGAAAGAAACAAAGGGGAAAACA 60.394 40.000 0.00 0.00 0.00 2.83
278 279 6.367374 AGAAAGAAACAAAGGGGAAAACAA 57.633 33.333 0.00 0.00 0.00 2.83
279 280 6.774673 AGAAAGAAACAAAGGGGAAAACAAA 58.225 32.000 0.00 0.00 0.00 2.83
280 281 7.227873 AGAAAGAAACAAAGGGGAAAACAAAA 58.772 30.769 0.00 0.00 0.00 2.44
281 282 7.721842 AGAAAGAAACAAAGGGGAAAACAAAAA 59.278 29.630 0.00 0.00 0.00 1.94
306 307 5.319140 CCCAGTAAAAAGGGGATAAAACG 57.681 43.478 0.00 0.00 45.08 3.60
307 308 4.768448 CCCAGTAAAAAGGGGATAAAACGT 59.232 41.667 0.00 0.00 45.08 3.99
308 309 5.945191 CCCAGTAAAAAGGGGATAAAACGTA 59.055 40.000 0.00 0.00 45.08 3.57
309 310 6.094464 CCCAGTAAAAAGGGGATAAAACGTAG 59.906 42.308 0.00 0.00 45.08 3.51
310 311 6.880529 CCAGTAAAAAGGGGATAAAACGTAGA 59.119 38.462 0.00 0.00 0.00 2.59
311 312 7.391275 CCAGTAAAAAGGGGATAAAACGTAGAA 59.609 37.037 0.00 0.00 0.00 2.10
312 313 8.785946 CAGTAAAAAGGGGATAAAACGTAGAAA 58.214 33.333 0.00 0.00 0.00 2.52
313 314 8.786898 AGTAAAAAGGGGATAAAACGTAGAAAC 58.213 33.333 0.00 0.00 0.00 2.78
314 315 7.828508 AAAAAGGGGATAAAACGTAGAAACT 57.171 32.000 0.00 0.00 0.00 2.66
315 316 7.444629 AAAAGGGGATAAAACGTAGAAACTC 57.555 36.000 0.00 0.00 0.00 3.01
316 317 4.752146 AGGGGATAAAACGTAGAAACTCG 58.248 43.478 0.00 0.00 0.00 4.18
317 318 4.463891 AGGGGATAAAACGTAGAAACTCGA 59.536 41.667 0.00 0.00 0.00 4.04
318 319 5.128335 AGGGGATAAAACGTAGAAACTCGAT 59.872 40.000 0.00 0.00 0.00 3.59
319 320 5.233689 GGGGATAAAACGTAGAAACTCGATG 59.766 44.000 0.00 0.00 0.00 3.84
320 321 6.038356 GGGATAAAACGTAGAAACTCGATGA 58.962 40.000 0.00 0.00 0.00 2.92
321 322 6.532657 GGGATAAAACGTAGAAACTCGATGAA 59.467 38.462 0.00 0.00 0.00 2.57
322 323 7.063780 GGGATAAAACGTAGAAACTCGATGAAA 59.936 37.037 0.00 0.00 0.00 2.69
323 324 8.437742 GGATAAAACGTAGAAACTCGATGAAAA 58.562 33.333 0.00 0.00 0.00 2.29
324 325 9.801714 GATAAAACGTAGAAACTCGATGAAAAA 57.198 29.630 0.00 0.00 0.00 1.94
367 368 9.794685 AAAAGAGAAGAAAACTGATGAAAGAAC 57.205 29.630 0.00 0.00 0.00 3.01
368 369 8.511604 AAGAGAAGAAAACTGATGAAAGAACA 57.488 30.769 0.00 0.00 0.00 3.18
369 370 8.511604 AGAGAAGAAAACTGATGAAAGAACAA 57.488 30.769 0.00 0.00 0.00 2.83
370 371 8.960591 AGAGAAGAAAACTGATGAAAGAACAAA 58.039 29.630 0.00 0.00 0.00 2.83
371 372 9.573133 GAGAAGAAAACTGATGAAAGAACAAAA 57.427 29.630 0.00 0.00 0.00 2.44
372 373 9.927668 AGAAGAAAACTGATGAAAGAACAAAAA 57.072 25.926 0.00 0.00 0.00 1.94
410 411 9.863845 AAACGAAAAATAGAAAACCAGAGAAAA 57.136 25.926 0.00 0.00 0.00 2.29
412 413 9.678941 ACGAAAAATAGAAAACCAGAGAAAATC 57.321 29.630 0.00 0.00 0.00 2.17
413 414 9.899226 CGAAAAATAGAAAACCAGAGAAAATCT 57.101 29.630 0.00 0.00 39.56 2.40
445 446 8.788325 AGGAACCATAGAAAACTATACAACAC 57.212 34.615 0.00 0.00 0.00 3.32
446 447 8.380099 AGGAACCATAGAAAACTATACAACACA 58.620 33.333 0.00 0.00 0.00 3.72
447 448 9.005777 GGAACCATAGAAAACTATACAACACAA 57.994 33.333 0.00 0.00 0.00 3.33
474 475 5.554822 TTTTTAGACAAACTCGCAACAGT 57.445 34.783 0.00 0.00 0.00 3.55
475 476 5.554822 TTTTAGACAAACTCGCAACAGTT 57.445 34.783 0.00 0.00 38.30 3.16
476 477 5.554822 TTTAGACAAACTCGCAACAGTTT 57.445 34.783 0.64 0.64 45.66 2.66
477 478 5.554822 TTAGACAAACTCGCAACAGTTTT 57.445 34.783 3.30 0.00 42.81 2.43
478 479 6.665474 TTAGACAAACTCGCAACAGTTTTA 57.335 33.333 3.30 0.00 42.81 1.52
479 480 5.751243 AGACAAACTCGCAACAGTTTTAT 57.249 34.783 3.30 0.00 42.81 1.40
480 481 6.131544 AGACAAACTCGCAACAGTTTTATT 57.868 33.333 3.30 0.00 42.81 1.40
484 485 5.662211 AACTCGCAACAGTTTTATTACGT 57.338 34.783 0.00 0.00 32.34 3.57
494 495 7.181143 ACAGTTTTATTACGTCGTCACAATT 57.819 32.000 0.00 0.00 0.00 2.32
501 502 9.583530 TTTATTACGTCGTCACAATTTTTACAG 57.416 29.630 0.00 0.00 0.00 2.74
508 509 5.411361 TCGTCACAATTTTTACAGGGATGAG 59.589 40.000 0.00 0.00 0.00 2.90
509 510 5.181245 CGTCACAATTTTTACAGGGATGAGT 59.819 40.000 0.00 0.00 0.00 3.41
514 515 8.023128 CACAATTTTTACAGGGATGAGTGTAAG 58.977 37.037 0.00 0.00 39.63 2.34
520 521 1.282157 AGGGATGAGTGTAAGGTTGCC 59.718 52.381 0.00 0.00 0.00 4.52
553 554 3.524095 TCAAACATGATGACCAACCCT 57.476 42.857 0.00 0.00 0.00 4.34
557 558 6.015918 TCAAACATGATGACCAACCCTAAAT 58.984 36.000 0.00 0.00 0.00 1.40
559 560 5.920193 ACATGATGACCAACCCTAAATTG 57.080 39.130 0.00 0.00 0.00 2.32
568 608 4.705023 ACCAACCCTAAATTGAGTACATGC 59.295 41.667 0.00 0.00 0.00 4.06
570 610 5.418840 CCAACCCTAAATTGAGTACATGCTT 59.581 40.000 0.00 0.00 0.00 3.91
572 612 6.515272 ACCCTAAATTGAGTACATGCTTTG 57.485 37.500 0.00 0.00 0.00 2.77
624 664 7.387948 GGTTCTAAACTCATGCTTAAGAACAGA 59.612 37.037 19.83 0.00 36.02 3.41
625 665 8.439286 GTTCTAAACTCATGCTTAAGAACAGAG 58.561 37.037 6.67 9.71 34.89 3.35
627 667 5.489792 AACTCATGCTTAAGAACAGAGGA 57.510 39.130 15.70 2.50 0.00 3.71
628 668 5.489792 ACTCATGCTTAAGAACAGAGGAA 57.510 39.130 15.70 0.00 0.00 3.36
629 669 5.869579 ACTCATGCTTAAGAACAGAGGAAA 58.130 37.500 15.70 0.00 0.00 3.13
630 670 6.479884 ACTCATGCTTAAGAACAGAGGAAAT 58.520 36.000 15.70 0.00 0.00 2.17
631 671 7.624549 ACTCATGCTTAAGAACAGAGGAAATA 58.375 34.615 15.70 0.00 0.00 1.40
632 672 8.103305 ACTCATGCTTAAGAACAGAGGAAATAA 58.897 33.333 15.70 0.00 0.00 1.40
633 673 8.862325 TCATGCTTAAGAACAGAGGAAATAAA 57.138 30.769 6.67 0.00 0.00 1.40
634 674 9.295825 TCATGCTTAAGAACAGAGGAAATAAAA 57.704 29.630 6.67 0.00 0.00 1.52
635 675 9.346725 CATGCTTAAGAACAGAGGAAATAAAAC 57.653 33.333 6.67 0.00 0.00 2.43
646 686 9.308000 ACAGAGGAAATAAAACAAATGTATCCA 57.692 29.630 0.00 0.00 0.00 3.41
718 758 2.352814 CCCAGTACAGTACAGCAGACAC 60.353 54.545 13.37 0.00 0.00 3.67
724 764 1.532868 CAGTACAGCAGACACAAAGGC 59.467 52.381 0.00 0.00 0.00 4.35
725 765 0.512952 GTACAGCAGACACAAAGGCG 59.487 55.000 0.00 0.00 0.00 5.52
726 766 0.391228 TACAGCAGACACAAAGGCGA 59.609 50.000 0.00 0.00 0.00 5.54
727 767 0.882042 ACAGCAGACACAAAGGCGAG 60.882 55.000 0.00 0.00 0.00 5.03
728 768 0.882042 CAGCAGACACAAAGGCGAGT 60.882 55.000 0.00 0.00 0.00 4.18
729 769 0.601311 AGCAGACACAAAGGCGAGTC 60.601 55.000 0.00 0.00 0.00 3.36
730 770 1.891060 GCAGACACAAAGGCGAGTCG 61.891 60.000 8.54 8.54 36.18 4.18
731 771 1.006102 AGACACAAAGGCGAGTCGG 60.006 57.895 15.52 0.00 36.18 4.79
732 772 1.006571 GACACAAAGGCGAGTCGGA 60.007 57.895 15.52 0.00 0.00 4.55
733 773 0.599204 GACACAAAGGCGAGTCGGAA 60.599 55.000 15.52 0.00 0.00 4.30
734 774 0.600255 ACACAAAGGCGAGTCGGAAG 60.600 55.000 15.52 0.00 0.00 3.46
739 779 2.267681 AAGGCGAGTCGGAAGCTACG 62.268 60.000 15.52 4.50 0.00 3.51
742 782 1.297745 CGAGTCGGAAGCTACGCTC 60.298 63.158 4.10 17.15 38.25 5.03
746 786 1.816679 TCGGAAGCTACGCTCGCTA 60.817 57.895 5.91 0.00 38.25 4.26
747 787 1.654743 CGGAAGCTACGCTCGCTAC 60.655 63.158 0.00 0.00 38.25 3.58
789 840 0.175073 GGTACATCCCGCTCGTTCTT 59.825 55.000 0.00 0.00 0.00 2.52
794 845 0.173708 ATCCCGCTCGTTCTTCTCAC 59.826 55.000 0.00 0.00 0.00 3.51
805 874 4.809426 TCGTTCTTCTCACCTTCTCAAAAC 59.191 41.667 0.00 0.00 0.00 2.43
808 877 5.110814 TCTTCTCACCTTCTCAAAACCAA 57.889 39.130 0.00 0.00 0.00 3.67
822 891 2.203070 CCAAATCCCGCTCCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
907 976 3.376540 TCCGCCATTTCAAAAACGAAAG 58.623 40.909 0.00 0.00 38.24 2.62
950 1019 4.667935 TCCTCCCCTCGCCCCAAA 62.668 66.667 0.00 0.00 0.00 3.28
970 1039 2.892425 CAAGATCCACCGCCGCTC 60.892 66.667 0.00 0.00 0.00 5.03
1308 1377 2.093447 ACTAGTGGATTCTCCCGCTTTG 60.093 50.000 0.00 0.00 44.07 2.77
1317 1386 0.322456 CTCCCGCTTTGGTGGAATGA 60.322 55.000 0.00 0.00 45.39 2.57
1334 1403 2.561478 TGACCTTGCCTCCTGTTTAC 57.439 50.000 0.00 0.00 0.00 2.01
1339 1408 3.222603 CCTTGCCTCCTGTTTACTGTTT 58.777 45.455 0.00 0.00 0.00 2.83
1340 1409 3.636764 CCTTGCCTCCTGTTTACTGTTTT 59.363 43.478 0.00 0.00 0.00 2.43
1415 1484 1.348036 CCTCTCGGTCTGACCCTTTTT 59.652 52.381 20.68 0.00 33.75 1.94
1479 1548 6.503524 TGCAAGAACAATTTAGAACAGTTCC 58.496 36.000 9.85 0.00 39.39 3.62
1482 1551 4.760204 AGAACAATTTAGAACAGTTCCGGG 59.240 41.667 9.85 0.00 39.39 5.73
1532 1601 1.451387 CCCGCCCCTAACATGTCAC 60.451 63.158 0.00 0.00 0.00 3.67
1539 1608 1.645034 CCTAACATGTCACGCCTCTG 58.355 55.000 0.00 0.00 0.00 3.35
1626 1710 6.756074 CCTCTAACATGTCTTTCTGATGAGTC 59.244 42.308 0.00 0.00 0.00 3.36
1880 1964 4.100035 ACACTTCTTCATCTGACAGTGTGA 59.900 41.667 0.00 5.85 37.78 3.58
1901 1985 6.020984 GTGAAAACTTTTGCAATTGTTGACC 58.979 36.000 15.25 9.74 0.00 4.02
2737 2823 5.013495 AGGGATGACCGTGATCATAAATCAT 59.987 40.000 0.00 6.55 46.96 2.45
2993 3089 4.023193 CGGCTAATGAAAAGTTGAAGGTGT 60.023 41.667 0.00 0.00 0.00 4.16
3159 3258 3.367992 TGTAACAGTTTTGCATGCCTG 57.632 42.857 16.68 16.90 0.00 4.85
3164 3263 4.178545 ACAGTTTTGCATGCCTGTTATC 57.821 40.909 18.17 3.15 34.64 1.75
3429 3528 7.414222 AAAGACTCGTACTAATCCCATACAA 57.586 36.000 0.00 0.00 0.00 2.41
3577 3676 1.200716 GGTCGTGGTGTCGAGTTGATA 59.799 52.381 0.00 0.00 40.52 2.15
3715 3815 4.027702 GCGTTTGACAAAGTGTTTGATCAC 60.028 41.667 0.00 0.00 43.26 3.06
3778 3878 2.362077 GGTTCAAAGTGCACTTGATGGT 59.638 45.455 31.73 13.81 36.12 3.55
4107 4207 5.653769 GGGAAATCCTGAGTTCAATGATCAA 59.346 40.000 0.00 0.00 37.16 2.57
4158 4258 9.636965 GAACAAATTTTTCAAACTAGTCAATGC 57.363 29.630 0.00 0.00 0.00 3.56
4199 4299 7.342581 TGGAAATATAAGATGCAGGTGTGTTA 58.657 34.615 0.00 0.00 0.00 2.41
4290 4391 6.101997 AGCTTATTTTTGTAGGCTTCAATGC 58.898 36.000 7.41 6.05 33.78 3.56
4466 4567 4.060038 AGTTTCTTCTCTGCTCAAACGA 57.940 40.909 0.00 0.00 33.13 3.85
4488 4589 3.853623 GCACAAAGCAGGTTGACTC 57.146 52.632 2.24 0.00 44.79 3.36
4641 4742 7.918562 TCCTTGATTTGAACTAAAACTTTTCCG 59.081 33.333 0.00 0.00 0.00 4.30
4749 4862 6.990798 TCAATTTGGTTGCAATGTCTCAATA 58.009 32.000 0.59 0.00 37.74 1.90
4902 5015 6.756542 GGATTTTTGGTGTAAATGAGGTATGC 59.243 38.462 0.00 0.00 0.00 3.14
5124 5237 7.197071 TGTGAAGTGTACATTTGTAACATCC 57.803 36.000 8.51 0.00 31.52 3.51
5132 5245 7.065803 GTGTACATTTGTAACATCCATAGCACT 59.934 37.037 0.00 0.00 31.52 4.40
5149 5262 9.120538 CCATAGCACTTGTATGGTATTAACTTT 57.879 33.333 1.62 0.00 40.45 2.66
5311 5424 7.349412 AGGGTGTACAGTCTCACTATAATTC 57.651 40.000 0.00 0.00 35.26 2.17
5348 5461 6.094464 ACAACCTACAACTGTTTTCCTTGTAC 59.906 38.462 0.00 0.00 30.76 2.90
5376 5491 2.334977 TGCTTGGGTGGAGACTCTAAA 58.665 47.619 1.74 0.00 0.00 1.85
5436 5551 3.601443 ACAAGCGAGTCTATTTGCTCT 57.399 42.857 0.00 0.00 36.80 4.09
5542 5657 4.511527 AGTCTATGCAGTCAATTCACTGG 58.488 43.478 11.72 0.00 43.61 4.00
5557 5672 1.217057 ACTGGCAAGTCCCATCCCAT 61.217 55.000 0.00 0.00 33.64 4.00
5768 5883 7.569957 GCTTTGATACTCTACTCTAGCGTAGAC 60.570 44.444 16.80 9.19 40.55 2.59
5780 5895 5.295950 TCTAGCGTAGACTGATGGTACTAC 58.704 45.833 0.00 0.00 33.98 2.73
5841 5999 7.425606 CCTTTTATCGCTTGGCTTGTATTAAT 58.574 34.615 0.00 0.00 0.00 1.40
5842 6000 8.564574 CCTTTTATCGCTTGGCTTGTATTAATA 58.435 33.333 0.00 0.00 0.00 0.98
5843 6001 9.944663 CTTTTATCGCTTGGCTTGTATTAATAA 57.055 29.630 0.00 0.00 0.00 1.40
5844 6002 9.724839 TTTTATCGCTTGGCTTGTATTAATAAC 57.275 29.630 0.00 0.00 0.00 1.89
5845 6003 8.671384 TTATCGCTTGGCTTGTATTAATAACT 57.329 30.769 0.00 0.00 0.00 2.24
5847 6005 8.671384 ATCGCTTGGCTTGTATTAATAACTAA 57.329 30.769 0.00 0.00 0.00 2.24
5848 6006 8.671384 TCGCTTGGCTTGTATTAATAACTAAT 57.329 30.769 0.00 0.00 34.47 1.73
5849 6007 9.116067 TCGCTTGGCTTGTATTAATAACTAATT 57.884 29.630 0.00 0.00 32.28 1.40
5850 6008 9.169468 CGCTTGGCTTGTATTAATAACTAATTG 57.831 33.333 0.00 0.00 32.28 2.32
5851 6009 8.968242 GCTTGGCTTGTATTAATAACTAATTGC 58.032 33.333 0.00 0.00 32.28 3.56
5854 6012 8.629158 TGGCTTGTATTAATAACTAATTGCTGG 58.371 33.333 0.00 0.00 32.28 4.85
5855 6013 8.082242 GGCTTGTATTAATAACTAATTGCTGGG 58.918 37.037 0.00 0.00 32.28 4.45
5856 6014 8.846211 GCTTGTATTAATAACTAATTGCTGGGA 58.154 33.333 0.00 0.00 32.28 4.37
5862 6020 6.396829 AATAACTAATTGCTGGGAAGATGC 57.603 37.500 0.00 0.00 0.00 3.91
5863 6021 3.370840 ACTAATTGCTGGGAAGATGCA 57.629 42.857 0.00 0.00 34.69 3.96
5864 6022 3.907221 ACTAATTGCTGGGAAGATGCAT 58.093 40.909 0.00 0.00 36.55 3.96
5865 6023 4.284178 ACTAATTGCTGGGAAGATGCATT 58.716 39.130 0.00 0.00 36.55 3.56
5866 6024 3.814005 AATTGCTGGGAAGATGCATTC 57.186 42.857 0.00 0.00 36.55 2.67
5867 6025 1.477553 TTGCTGGGAAGATGCATTCC 58.522 50.000 10.17 10.17 46.82 3.01
5874 6032 3.722728 GGAAGATGCATTCCATTGACC 57.277 47.619 13.21 0.81 46.77 4.02
5875 6033 3.294214 GGAAGATGCATTCCATTGACCT 58.706 45.455 13.21 0.00 46.77 3.85
5876 6034 3.067742 GGAAGATGCATTCCATTGACCTG 59.932 47.826 13.21 0.00 46.77 4.00
5877 6035 2.029623 AGATGCATTCCATTGACCTGC 58.970 47.619 0.00 0.00 33.29 4.85
5878 6036 2.029623 GATGCATTCCATTGACCTGCT 58.970 47.619 0.00 0.00 33.29 4.24
5879 6037 1.927487 TGCATTCCATTGACCTGCTT 58.073 45.000 0.00 0.00 32.92 3.91
5880 6038 1.546923 TGCATTCCATTGACCTGCTTG 59.453 47.619 0.00 0.00 32.92 4.01
5881 6039 1.547372 GCATTCCATTGACCTGCTTGT 59.453 47.619 0.00 0.00 0.00 3.16
5882 6040 2.673043 GCATTCCATTGACCTGCTTGTG 60.673 50.000 0.00 0.00 0.00 3.33
5883 6041 2.363306 TTCCATTGACCTGCTTGTGT 57.637 45.000 0.00 0.00 0.00 3.72
5884 6042 1.608055 TCCATTGACCTGCTTGTGTG 58.392 50.000 0.00 0.00 0.00 3.82
5885 6043 0.038892 CCATTGACCTGCTTGTGTGC 60.039 55.000 0.00 0.00 0.00 4.57
5886 6044 0.956633 CATTGACCTGCTTGTGTGCT 59.043 50.000 0.00 0.00 0.00 4.40
5887 6045 2.153645 CATTGACCTGCTTGTGTGCTA 58.846 47.619 0.00 0.00 0.00 3.49
5888 6046 2.566833 TTGACCTGCTTGTGTGCTAT 57.433 45.000 0.00 0.00 0.00 2.97
5889 6047 2.099141 TGACCTGCTTGTGTGCTATC 57.901 50.000 0.00 0.00 0.00 2.08
5890 6048 1.625315 TGACCTGCTTGTGTGCTATCT 59.375 47.619 0.00 0.00 0.00 1.98
5891 6049 2.275318 GACCTGCTTGTGTGCTATCTC 58.725 52.381 0.00 0.00 0.00 2.75
5892 6050 1.065854 ACCTGCTTGTGTGCTATCTCC 60.066 52.381 0.00 0.00 0.00 3.71
5893 6051 1.065926 CCTGCTTGTGTGCTATCTCCA 60.066 52.381 0.00 0.00 0.00 3.86
5894 6052 2.005451 CTGCTTGTGTGCTATCTCCAC 58.995 52.381 0.00 0.00 0.00 4.02
5900 6058 3.609853 TGTGTGCTATCTCCACCAATTC 58.390 45.455 0.00 0.00 32.30 2.17
5909 6067 6.238593 GCTATCTCCACCAATTCTTCATTCAC 60.239 42.308 0.00 0.00 0.00 3.18
5956 6114 7.772757 TCAGTATCACCAAATGCACATTACATA 59.227 33.333 0.00 0.00 0.00 2.29
5984 6142 4.016444 CTGAGGCTATCCTGGATAGAGTC 58.984 52.174 36.49 30.02 43.17 3.36
5998 6156 5.899547 TGGATAGAGTCTGAGGCAGAATTTA 59.100 40.000 1.86 0.00 42.46 1.40
6085 6243 5.352293 CAGTATGAGCTTTGTGTCAGCATAA 59.648 40.000 0.00 0.00 39.69 1.90
6121 6279 0.034756 CGTCATCCTTGGTGGTGACA 59.965 55.000 16.18 0.00 42.06 3.58
6445 6603 1.065199 TCCTCTGCACCACATTCATCC 60.065 52.381 0.00 0.00 0.00 3.51
6450 6608 2.108514 CACCACATTCATCCGCGCT 61.109 57.895 5.56 0.00 0.00 5.92
6471 6629 2.945008 TGGTTTCAGTTCAGCAGTTGAG 59.055 45.455 0.00 0.00 37.07 3.02
6475 6633 0.250640 CAGTTCAGCAGTTGAGGCCT 60.251 55.000 3.86 3.86 37.07 5.19
6476 6634 0.036022 AGTTCAGCAGTTGAGGCCTC 59.964 55.000 26.78 26.78 37.07 4.70
6477 6635 0.036022 GTTCAGCAGTTGAGGCCTCT 59.964 55.000 32.28 10.99 37.07 3.69
6478 6636 0.322975 TTCAGCAGTTGAGGCCTCTC 59.677 55.000 32.28 23.74 37.07 3.20
6479 6637 0.543883 TCAGCAGTTGAGGCCTCTCT 60.544 55.000 32.28 25.41 40.58 3.10
6480 6638 0.108233 CAGCAGTTGAGGCCTCTCTC 60.108 60.000 32.28 21.09 40.58 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.187599 CTAGGCTTGTGCGTGTTGCC 62.188 60.000 0.00 0.00 45.60 4.52
1 2 1.207593 CTAGGCTTGTGCGTGTTGC 59.792 57.895 0.00 0.00 46.70 4.17
2 3 1.207593 GCTAGGCTTGTGCGTGTTG 59.792 57.895 0.00 0.00 40.82 3.33
3 4 0.320374 TAGCTAGGCTTGTGCGTGTT 59.680 50.000 0.00 0.00 40.44 3.32
4 5 0.389948 GTAGCTAGGCTTGTGCGTGT 60.390 55.000 0.00 0.00 40.44 4.49
5 6 1.084370 GGTAGCTAGGCTTGTGCGTG 61.084 60.000 0.00 0.00 40.44 5.34
6 7 1.218316 GGTAGCTAGGCTTGTGCGT 59.782 57.895 0.00 0.00 40.44 5.24
7 8 1.084370 GTGGTAGCTAGGCTTGTGCG 61.084 60.000 0.00 0.00 40.44 5.34
8 9 0.744771 GGTGGTAGCTAGGCTTGTGC 60.745 60.000 0.00 0.00 40.44 4.57
9 10 0.460284 CGGTGGTAGCTAGGCTTGTG 60.460 60.000 0.00 0.00 40.44 3.33
10 11 0.903454 ACGGTGGTAGCTAGGCTTGT 60.903 55.000 0.00 0.00 40.44 3.16
11 12 1.108776 TACGGTGGTAGCTAGGCTTG 58.891 55.000 0.00 0.00 40.44 4.01
12 13 1.687123 CATACGGTGGTAGCTAGGCTT 59.313 52.381 0.00 0.00 40.44 4.35
13 14 1.329256 CATACGGTGGTAGCTAGGCT 58.671 55.000 0.00 0.00 43.41 4.58
14 15 0.319641 GCATACGGTGGTAGCTAGGC 60.320 60.000 0.00 0.00 30.81 3.93
15 16 1.037493 TGCATACGGTGGTAGCTAGG 58.963 55.000 0.00 0.00 30.81 3.02
16 17 2.882927 TTGCATACGGTGGTAGCTAG 57.117 50.000 0.00 0.00 30.81 3.42
17 18 3.264104 GTTTTGCATACGGTGGTAGCTA 58.736 45.455 0.00 0.00 30.81 3.32
18 19 2.081462 GTTTTGCATACGGTGGTAGCT 58.919 47.619 0.00 0.00 30.81 3.32
19 20 1.131693 GGTTTTGCATACGGTGGTAGC 59.868 52.381 0.00 0.00 30.81 3.58
20 21 1.741145 GGGTTTTGCATACGGTGGTAG 59.259 52.381 0.00 0.00 30.81 3.18
21 22 1.351683 AGGGTTTTGCATACGGTGGTA 59.648 47.619 0.00 0.00 0.00 3.25
22 23 0.111639 AGGGTTTTGCATACGGTGGT 59.888 50.000 0.00 0.00 0.00 4.16
23 24 1.201414 GAAGGGTTTTGCATACGGTGG 59.799 52.381 0.00 0.00 0.00 4.61
24 25 1.883275 TGAAGGGTTTTGCATACGGTG 59.117 47.619 0.00 0.00 0.00 4.94
25 26 2.279935 TGAAGGGTTTTGCATACGGT 57.720 45.000 0.00 0.00 0.00 4.83
26 27 3.866883 AATGAAGGGTTTTGCATACGG 57.133 42.857 0.00 0.00 0.00 4.02
27 28 8.918961 TTAATAAATGAAGGGTTTTGCATACG 57.081 30.769 0.00 0.00 0.00 3.06
51 52 9.247861 ACTCAAGCCTAATTATGAACTTCATTT 57.752 29.630 9.57 2.31 38.26 2.32
52 53 8.814038 ACTCAAGCCTAATTATGAACTTCATT 57.186 30.769 9.57 0.00 38.26 2.57
53 54 8.270744 AGACTCAAGCCTAATTATGAACTTCAT 58.729 33.333 9.26 9.26 40.72 2.57
54 55 7.624549 AGACTCAAGCCTAATTATGAACTTCA 58.375 34.615 0.00 0.00 0.00 3.02
55 56 7.043059 CGAGACTCAAGCCTAATTATGAACTTC 60.043 40.741 2.82 0.00 0.00 3.01
56 57 6.758886 CGAGACTCAAGCCTAATTATGAACTT 59.241 38.462 2.82 0.00 0.00 2.66
57 58 6.096987 TCGAGACTCAAGCCTAATTATGAACT 59.903 38.462 2.82 0.00 0.00 3.01
58 59 6.199342 GTCGAGACTCAAGCCTAATTATGAAC 59.801 42.308 2.82 0.00 0.00 3.18
59 60 6.273825 GTCGAGACTCAAGCCTAATTATGAA 58.726 40.000 2.82 0.00 0.00 2.57
60 61 5.221263 GGTCGAGACTCAAGCCTAATTATGA 60.221 44.000 2.82 0.00 0.00 2.15
61 62 4.985409 GGTCGAGACTCAAGCCTAATTATG 59.015 45.833 2.82 0.00 0.00 1.90
62 63 4.039366 GGGTCGAGACTCAAGCCTAATTAT 59.961 45.833 4.31 0.00 0.00 1.28
63 64 3.383825 GGGTCGAGACTCAAGCCTAATTA 59.616 47.826 4.31 0.00 0.00 1.40
64 65 2.168728 GGGTCGAGACTCAAGCCTAATT 59.831 50.000 4.31 0.00 0.00 1.40
65 66 1.757699 GGGTCGAGACTCAAGCCTAAT 59.242 52.381 4.31 0.00 0.00 1.73
66 67 1.183549 GGGTCGAGACTCAAGCCTAA 58.816 55.000 4.31 0.00 0.00 2.69
67 68 0.331954 AGGGTCGAGACTCAAGCCTA 59.668 55.000 12.54 0.00 39.06 3.93
68 69 0.331954 TAGGGTCGAGACTCAAGCCT 59.668 55.000 17.89 17.89 43.11 4.58
69 70 1.183549 TTAGGGTCGAGACTCAAGCC 58.816 55.000 3.27 3.27 33.19 4.35
70 71 2.492484 TCTTTAGGGTCGAGACTCAAGC 59.508 50.000 5.85 0.00 33.19 4.01
71 72 4.785511 TTCTTTAGGGTCGAGACTCAAG 57.214 45.455 5.85 1.83 33.19 3.02
72 73 5.540400 TTTTCTTTAGGGTCGAGACTCAA 57.460 39.130 5.85 0.00 33.19 3.02
73 74 5.540400 TTTTTCTTTAGGGTCGAGACTCA 57.460 39.130 5.85 0.00 33.19 3.41
74 75 8.543862 TTTATTTTTCTTTAGGGTCGAGACTC 57.456 34.615 3.09 0.00 0.00 3.36
75 76 8.373220 TCTTTATTTTTCTTTAGGGTCGAGACT 58.627 33.333 3.09 0.00 0.00 3.24
76 77 8.543862 TCTTTATTTTTCTTTAGGGTCGAGAC 57.456 34.615 0.00 0.00 0.00 3.36
77 78 9.563748 TTTCTTTATTTTTCTTTAGGGTCGAGA 57.436 29.630 0.00 0.00 0.00 4.04
78 79 9.608617 GTTTCTTTATTTTTCTTTAGGGTCGAG 57.391 33.333 0.00 0.00 0.00 4.04
79 80 8.570488 GGTTTCTTTATTTTTCTTTAGGGTCGA 58.430 33.333 0.00 0.00 0.00 4.20
80 81 7.811236 GGGTTTCTTTATTTTTCTTTAGGGTCG 59.189 37.037 0.00 0.00 0.00 4.79
81 82 8.644216 TGGGTTTCTTTATTTTTCTTTAGGGTC 58.356 33.333 0.00 0.00 0.00 4.46
82 83 8.555896 TGGGTTTCTTTATTTTTCTTTAGGGT 57.444 30.769 0.00 0.00 0.00 4.34
102 103 9.051679 GCTTTTATTGTTTGTTCTTATTGGGTT 57.948 29.630 0.00 0.00 0.00 4.11
103 104 8.207545 TGCTTTTATTGTTTGTTCTTATTGGGT 58.792 29.630 0.00 0.00 0.00 4.51
104 105 8.600449 TGCTTTTATTGTTTGTTCTTATTGGG 57.400 30.769 0.00 0.00 0.00 4.12
130 131 9.299963 GCATTGCTTTTCTTTGGTTTTATTTTT 57.700 25.926 0.16 0.00 0.00 1.94
131 132 8.465201 TGCATTGCTTTTCTTTGGTTTTATTTT 58.535 25.926 10.49 0.00 0.00 1.82
132 133 7.994194 TGCATTGCTTTTCTTTGGTTTTATTT 58.006 26.923 10.49 0.00 0.00 1.40
133 134 7.565323 TGCATTGCTTTTCTTTGGTTTTATT 57.435 28.000 10.49 0.00 0.00 1.40
134 135 7.565323 TTGCATTGCTTTTCTTTGGTTTTAT 57.435 28.000 10.49 0.00 0.00 1.40
135 136 6.992063 TTGCATTGCTTTTCTTTGGTTTTA 57.008 29.167 10.49 0.00 0.00 1.52
136 137 5.893897 TTGCATTGCTTTTCTTTGGTTTT 57.106 30.435 10.49 0.00 0.00 2.43
137 138 5.893897 TTTGCATTGCTTTTCTTTGGTTT 57.106 30.435 10.49 0.00 0.00 3.27
138 139 5.647225 TCTTTTGCATTGCTTTTCTTTGGTT 59.353 32.000 10.49 0.00 0.00 3.67
139 140 5.184711 TCTTTTGCATTGCTTTTCTTTGGT 58.815 33.333 10.49 0.00 0.00 3.67
140 141 5.738118 TCTTTTGCATTGCTTTTCTTTGG 57.262 34.783 10.49 0.00 0.00 3.28
141 142 7.411274 TCATTCTTTTGCATTGCTTTTCTTTG 58.589 30.769 10.49 1.39 0.00 2.77
142 143 7.556733 TCATTCTTTTGCATTGCTTTTCTTT 57.443 28.000 10.49 0.00 0.00 2.52
143 144 7.556733 TTCATTCTTTTGCATTGCTTTTCTT 57.443 28.000 10.49 0.00 0.00 2.52
144 145 7.556733 TTTCATTCTTTTGCATTGCTTTTCT 57.443 28.000 10.49 0.00 0.00 2.52
145 146 7.697291 TGTTTTCATTCTTTTGCATTGCTTTTC 59.303 29.630 10.49 0.00 0.00 2.29
146 147 7.536855 TGTTTTCATTCTTTTGCATTGCTTTT 58.463 26.923 10.49 0.00 0.00 2.27
147 148 7.086230 TGTTTTCATTCTTTTGCATTGCTTT 57.914 28.000 10.49 0.00 0.00 3.51
148 149 6.680874 TGTTTTCATTCTTTTGCATTGCTT 57.319 29.167 10.49 0.00 0.00 3.91
149 150 6.680874 TTGTTTTCATTCTTTTGCATTGCT 57.319 29.167 10.49 0.00 0.00 3.91
150 151 7.188157 TCTTTGTTTTCATTCTTTTGCATTGC 58.812 30.769 0.46 0.46 0.00 3.56
151 152 7.375017 GCTCTTTGTTTTCATTCTTTTGCATTG 59.625 33.333 0.00 0.00 0.00 2.82
152 153 7.412063 GCTCTTTGTTTTCATTCTTTTGCATT 58.588 30.769 0.00 0.00 0.00 3.56
153 154 6.292488 CGCTCTTTGTTTTCATTCTTTTGCAT 60.292 34.615 0.00 0.00 0.00 3.96
154 155 5.005586 CGCTCTTTGTTTTCATTCTTTTGCA 59.994 36.000 0.00 0.00 0.00 4.08
155 156 5.426240 CGCTCTTTGTTTTCATTCTTTTGC 58.574 37.500 0.00 0.00 0.00 3.68
156 157 5.748152 TCCGCTCTTTGTTTTCATTCTTTTG 59.252 36.000 0.00 0.00 0.00 2.44
157 158 5.901552 TCCGCTCTTTGTTTTCATTCTTTT 58.098 33.333 0.00 0.00 0.00 2.27
158 159 5.299279 TCTCCGCTCTTTGTTTTCATTCTTT 59.701 36.000 0.00 0.00 0.00 2.52
159 160 4.821805 TCTCCGCTCTTTGTTTTCATTCTT 59.178 37.500 0.00 0.00 0.00 2.52
160 161 4.389374 TCTCCGCTCTTTGTTTTCATTCT 58.611 39.130 0.00 0.00 0.00 2.40
161 162 4.749245 TCTCCGCTCTTTGTTTTCATTC 57.251 40.909 0.00 0.00 0.00 2.67
162 163 5.299279 TCTTTCTCCGCTCTTTGTTTTCATT 59.701 36.000 0.00 0.00 0.00 2.57
163 164 4.821805 TCTTTCTCCGCTCTTTGTTTTCAT 59.178 37.500 0.00 0.00 0.00 2.57
164 165 4.196193 TCTTTCTCCGCTCTTTGTTTTCA 58.804 39.130 0.00 0.00 0.00 2.69
165 166 4.813296 TCTTTCTCCGCTCTTTGTTTTC 57.187 40.909 0.00 0.00 0.00 2.29
166 167 5.105917 TGTTTCTTTCTCCGCTCTTTGTTTT 60.106 36.000 0.00 0.00 0.00 2.43
167 168 4.398044 TGTTTCTTTCTCCGCTCTTTGTTT 59.602 37.500 0.00 0.00 0.00 2.83
168 169 3.945285 TGTTTCTTTCTCCGCTCTTTGTT 59.055 39.130 0.00 0.00 0.00 2.83
169 170 3.541632 TGTTTCTTTCTCCGCTCTTTGT 58.458 40.909 0.00 0.00 0.00 2.83
170 171 4.552166 TTGTTTCTTTCTCCGCTCTTTG 57.448 40.909 0.00 0.00 0.00 2.77
171 172 4.881850 TCTTTGTTTCTTTCTCCGCTCTTT 59.118 37.500 0.00 0.00 0.00 2.52
172 173 4.451900 TCTTTGTTTCTTTCTCCGCTCTT 58.548 39.130 0.00 0.00 0.00 2.85
173 174 4.073293 TCTTTGTTTCTTTCTCCGCTCT 57.927 40.909 0.00 0.00 0.00 4.09
174 175 4.813296 TTCTTTGTTTCTTTCTCCGCTC 57.187 40.909 0.00 0.00 0.00 5.03
175 176 5.576447 TTTTCTTTGTTTCTTTCTCCGCT 57.424 34.783 0.00 0.00 0.00 5.52
176 177 5.115622 CGATTTTCTTTGTTTCTTTCTCCGC 59.884 40.000 0.00 0.00 0.00 5.54
177 178 6.427150 TCGATTTTCTTTGTTTCTTTCTCCG 58.573 36.000 0.00 0.00 0.00 4.63
178 179 8.076178 TCATCGATTTTCTTTGTTTCTTTCTCC 58.924 33.333 0.00 0.00 0.00 3.71
179 180 9.450807 TTCATCGATTTTCTTTGTTTCTTTCTC 57.549 29.630 0.00 0.00 0.00 2.87
180 181 9.801873 TTTCATCGATTTTCTTTGTTTCTTTCT 57.198 25.926 0.00 0.00 0.00 2.52
184 185 9.748708 TGATTTTCATCGATTTTCTTTGTTTCT 57.251 25.926 0.00 0.00 31.08 2.52
187 188 9.748708 TCTTGATTTTCATCGATTTTCTTTGTT 57.251 25.926 0.00 0.00 31.08 2.83
188 189 9.748708 TTCTTGATTTTCATCGATTTTCTTTGT 57.251 25.926 0.00 0.00 31.08 2.83
195 196 9.748708 TGTTTCTTTCTTGATTTTCATCGATTT 57.251 25.926 0.00 0.00 31.08 2.17
196 197 9.748708 TTGTTTCTTTCTTGATTTTCATCGATT 57.251 25.926 0.00 0.00 31.08 3.34
197 198 9.748708 TTTGTTTCTTTCTTGATTTTCATCGAT 57.251 25.926 0.00 0.00 31.08 3.59
198 199 9.236691 CTTTGTTTCTTTCTTGATTTTCATCGA 57.763 29.630 0.00 0.00 31.08 3.59
199 200 9.236691 TCTTTGTTTCTTTCTTGATTTTCATCG 57.763 29.630 0.00 0.00 31.08 3.84
239 240 8.083462 TGTTTCTTTCTCGGTTTTACTGTTTTT 58.917 29.630 0.00 0.00 0.00 1.94
240 241 7.595604 TGTTTCTTTCTCGGTTTTACTGTTTT 58.404 30.769 0.00 0.00 0.00 2.43
241 242 7.148355 TGTTTCTTTCTCGGTTTTACTGTTT 57.852 32.000 0.00 0.00 0.00 2.83
242 243 6.746745 TGTTTCTTTCTCGGTTTTACTGTT 57.253 33.333 0.00 0.00 0.00 3.16
243 244 6.746745 TTGTTTCTTTCTCGGTTTTACTGT 57.253 33.333 0.00 0.00 0.00 3.55
244 245 6.691388 CCTTTGTTTCTTTCTCGGTTTTACTG 59.309 38.462 0.00 0.00 0.00 2.74
245 246 6.183360 CCCTTTGTTTCTTTCTCGGTTTTACT 60.183 38.462 0.00 0.00 0.00 2.24
246 247 5.975344 CCCTTTGTTTCTTTCTCGGTTTTAC 59.025 40.000 0.00 0.00 0.00 2.01
247 248 5.068067 CCCCTTTGTTTCTTTCTCGGTTTTA 59.932 40.000 0.00 0.00 0.00 1.52
248 249 4.142026 CCCCTTTGTTTCTTTCTCGGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
249 250 3.383505 CCCCTTTGTTTCTTTCTCGGTTT 59.616 43.478 0.00 0.00 0.00 3.27
250 251 2.956333 CCCCTTTGTTTCTTTCTCGGTT 59.044 45.455 0.00 0.00 0.00 4.44
251 252 2.173996 TCCCCTTTGTTTCTTTCTCGGT 59.826 45.455 0.00 0.00 0.00 4.69
252 253 2.858745 TCCCCTTTGTTTCTTTCTCGG 58.141 47.619 0.00 0.00 0.00 4.63
253 254 4.911514 TTTCCCCTTTGTTTCTTTCTCG 57.088 40.909 0.00 0.00 0.00 4.04
254 255 5.972935 TGTTTTCCCCTTTGTTTCTTTCTC 58.027 37.500 0.00 0.00 0.00 2.87
255 256 6.367374 TTGTTTTCCCCTTTGTTTCTTTCT 57.633 33.333 0.00 0.00 0.00 2.52
256 257 7.441890 TTTTGTTTTCCCCTTTGTTTCTTTC 57.558 32.000 0.00 0.00 0.00 2.62
257 258 7.825331 TTTTTGTTTTCCCCTTTGTTTCTTT 57.175 28.000 0.00 0.00 0.00 2.52
279 280 7.693533 TTTATCCCCTTTTTACTGGGTTTTT 57.306 32.000 0.00 0.00 41.82 1.94
280 281 7.511268 GTTTTATCCCCTTTTTACTGGGTTTT 58.489 34.615 0.00 0.00 41.82 2.43
281 282 6.239373 CGTTTTATCCCCTTTTTACTGGGTTT 60.239 38.462 0.00 0.00 41.82 3.27
282 283 5.244402 CGTTTTATCCCCTTTTTACTGGGTT 59.756 40.000 0.00 0.00 41.82 4.11
283 284 4.768448 CGTTTTATCCCCTTTTTACTGGGT 59.232 41.667 0.00 0.00 41.82 4.51
284 285 4.768448 ACGTTTTATCCCCTTTTTACTGGG 59.232 41.667 0.00 0.00 42.98 4.45
285 286 5.970317 ACGTTTTATCCCCTTTTTACTGG 57.030 39.130 0.00 0.00 0.00 4.00
286 287 7.910441 TCTACGTTTTATCCCCTTTTTACTG 57.090 36.000 0.00 0.00 0.00 2.74
287 288 8.786898 GTTTCTACGTTTTATCCCCTTTTTACT 58.213 33.333 0.00 0.00 0.00 2.24
288 289 8.786898 AGTTTCTACGTTTTATCCCCTTTTTAC 58.213 33.333 0.00 0.00 0.00 2.01
289 290 8.922931 AGTTTCTACGTTTTATCCCCTTTTTA 57.077 30.769 0.00 0.00 0.00 1.52
290 291 7.308169 CGAGTTTCTACGTTTTATCCCCTTTTT 60.308 37.037 0.00 0.00 0.00 1.94
291 292 6.148315 CGAGTTTCTACGTTTTATCCCCTTTT 59.852 38.462 0.00 0.00 0.00 2.27
292 293 5.640783 CGAGTTTCTACGTTTTATCCCCTTT 59.359 40.000 0.00 0.00 0.00 3.11
293 294 5.047092 TCGAGTTTCTACGTTTTATCCCCTT 60.047 40.000 0.00 0.00 0.00 3.95
294 295 4.463891 TCGAGTTTCTACGTTTTATCCCCT 59.536 41.667 0.00 0.00 0.00 4.79
295 296 4.747810 TCGAGTTTCTACGTTTTATCCCC 58.252 43.478 0.00 0.00 0.00 4.81
296 297 6.038356 TCATCGAGTTTCTACGTTTTATCCC 58.962 40.000 0.00 0.00 0.00 3.85
297 298 7.515957 TTCATCGAGTTTCTACGTTTTATCC 57.484 36.000 0.00 0.00 0.00 2.59
298 299 9.801714 TTTTTCATCGAGTTTCTACGTTTTATC 57.198 29.630 0.00 0.00 0.00 1.75
341 342 9.794685 GTTCTTTCATCAGTTTTCTTCTCTTTT 57.205 29.630 0.00 0.00 0.00 2.27
342 343 8.960591 TGTTCTTTCATCAGTTTTCTTCTCTTT 58.039 29.630 0.00 0.00 0.00 2.52
343 344 8.511604 TGTTCTTTCATCAGTTTTCTTCTCTT 57.488 30.769 0.00 0.00 0.00 2.85
344 345 8.511604 TTGTTCTTTCATCAGTTTTCTTCTCT 57.488 30.769 0.00 0.00 0.00 3.10
345 346 9.573133 TTTTGTTCTTTCATCAGTTTTCTTCTC 57.427 29.630 0.00 0.00 0.00 2.87
346 347 9.927668 TTTTTGTTCTTTCATCAGTTTTCTTCT 57.072 25.926 0.00 0.00 0.00 2.85
384 385 9.863845 TTTTCTCTGGTTTTCTATTTTTCGTTT 57.136 25.926 0.00 0.00 0.00 3.60
386 387 9.678941 GATTTTCTCTGGTTTTCTATTTTTCGT 57.321 29.630 0.00 0.00 0.00 3.85
387 388 9.899226 AGATTTTCTCTGGTTTTCTATTTTTCG 57.101 29.630 0.00 0.00 31.12 3.46
419 420 9.227777 GTGTTGTATAGTTTTCTATGGTTCCTT 57.772 33.333 0.00 0.00 42.40 3.36
420 421 8.380099 TGTGTTGTATAGTTTTCTATGGTTCCT 58.620 33.333 0.00 0.00 42.40 3.36
421 422 8.556213 TGTGTTGTATAGTTTTCTATGGTTCC 57.444 34.615 0.00 0.00 42.40 3.62
452 453 5.554822 ACTGTTGCGAGTTTGTCTAAAAA 57.445 34.783 0.00 0.00 0.00 1.94
453 454 5.554822 AACTGTTGCGAGTTTGTCTAAAA 57.445 34.783 0.00 0.00 31.92 1.52
454 455 5.554822 AAACTGTTGCGAGTTTGTCTAAA 57.445 34.783 7.34 0.00 43.14 1.85
455 456 5.554822 AAAACTGTTGCGAGTTTGTCTAA 57.445 34.783 8.57 0.00 43.83 2.10
456 457 6.854496 ATAAAACTGTTGCGAGTTTGTCTA 57.146 33.333 8.57 0.68 43.83 2.59
457 458 5.751243 ATAAAACTGTTGCGAGTTTGTCT 57.249 34.783 8.57 0.00 43.83 3.41
458 459 6.084551 CGTAATAAAACTGTTGCGAGTTTGTC 59.915 38.462 8.57 0.56 43.83 3.18
459 460 5.905181 CGTAATAAAACTGTTGCGAGTTTGT 59.095 36.000 8.57 3.76 43.83 2.83
460 461 5.905181 ACGTAATAAAACTGTTGCGAGTTTG 59.095 36.000 8.57 0.32 43.83 2.93
461 462 6.051646 ACGTAATAAAACTGTTGCGAGTTT 57.948 33.333 0.00 3.22 46.02 2.66
462 463 5.610982 CGACGTAATAAAACTGTTGCGAGTT 60.611 40.000 0.00 0.00 37.81 3.01
463 464 4.143473 CGACGTAATAAAACTGTTGCGAGT 60.143 41.667 0.00 0.00 37.00 4.18
464 465 4.143473 ACGACGTAATAAAACTGTTGCGAG 60.143 41.667 0.00 0.14 37.00 5.03
465 466 3.735240 ACGACGTAATAAAACTGTTGCGA 59.265 39.130 0.00 0.00 37.00 5.10
466 467 4.043761 ACGACGTAATAAAACTGTTGCG 57.956 40.909 0.00 0.00 38.96 4.85
467 468 4.837050 GTGACGACGTAATAAAACTGTTGC 59.163 41.667 0.00 0.00 0.00 4.17
468 469 5.965202 TGTGACGACGTAATAAAACTGTTG 58.035 37.500 0.00 0.00 0.00 3.33
469 470 6.586868 TTGTGACGACGTAATAAAACTGTT 57.413 33.333 0.00 0.00 0.00 3.16
470 471 6.774354 ATTGTGACGACGTAATAAAACTGT 57.226 33.333 0.00 0.00 0.00 3.55
471 472 8.483743 AAAATTGTGACGACGTAATAAAACTG 57.516 30.769 0.00 0.00 0.00 3.16
474 475 9.926751 TGTAAAAATTGTGACGACGTAATAAAA 57.073 25.926 0.00 0.00 0.00 1.52
475 476 9.583530 CTGTAAAAATTGTGACGACGTAATAAA 57.416 29.630 0.00 0.00 0.00 1.40
476 477 8.222433 CCTGTAAAAATTGTGACGACGTAATAA 58.778 33.333 0.00 0.00 0.00 1.40
477 478 7.148606 CCCTGTAAAAATTGTGACGACGTAATA 60.149 37.037 0.00 0.00 0.00 0.98
478 479 6.347888 CCCTGTAAAAATTGTGACGACGTAAT 60.348 38.462 0.00 0.00 0.00 1.89
479 480 5.050227 CCCTGTAAAAATTGTGACGACGTAA 60.050 40.000 0.00 0.00 0.00 3.18
480 481 4.448395 CCCTGTAAAAATTGTGACGACGTA 59.552 41.667 0.00 0.00 0.00 3.57
484 485 5.309638 TCATCCCTGTAAAAATTGTGACGA 58.690 37.500 0.00 0.00 0.00 4.20
494 495 5.836024 ACCTTACACTCATCCCTGTAAAA 57.164 39.130 0.00 0.00 33.50 1.52
501 502 1.751437 GGCAACCTTACACTCATCCC 58.249 55.000 0.00 0.00 0.00 3.85
508 509 0.535553 TCAACCCGGCAACCTTACAC 60.536 55.000 0.00 0.00 0.00 2.90
509 510 0.535553 GTCAACCCGGCAACCTTACA 60.536 55.000 0.00 0.00 0.00 2.41
514 515 0.323087 ATTAGGTCAACCCGGCAACC 60.323 55.000 0.00 0.00 38.74 3.77
520 521 4.006989 TCATGTTTGATTAGGTCAACCCG 58.993 43.478 0.00 0.00 46.14 5.28
553 554 5.163764 CCTCGCAAAGCATGTACTCAATTTA 60.164 40.000 0.00 0.00 0.00 1.40
557 558 2.076100 CCTCGCAAAGCATGTACTCAA 58.924 47.619 0.00 0.00 0.00 3.02
559 560 1.726853 ACCTCGCAAAGCATGTACTC 58.273 50.000 0.00 0.00 0.00 2.59
568 608 0.886490 AGGCTCACAACCTCGCAAAG 60.886 55.000 0.00 0.00 28.76 2.77
570 610 1.301716 GAGGCTCACAACCTCGCAA 60.302 57.895 10.25 0.00 44.10 4.85
635 675 8.568959 GCTCGTAGCTGTGTTGGATACATTTG 62.569 46.154 0.00 0.00 42.62 2.32
646 686 1.444553 GCTCGCTCGTAGCTGTGTT 60.445 57.895 0.00 0.00 39.60 3.32
705 745 1.873903 CGCCTTTGTGTCTGCTGTACT 60.874 52.381 0.00 0.00 0.00 2.73
718 758 0.108804 TAGCTTCCGACTCGCCTTTG 60.109 55.000 0.00 0.00 0.00 2.77
770 810 0.175073 AAGAACGAGCGGGATGTACC 59.825 55.000 0.00 0.00 38.08 3.34
771 811 1.134560 AGAAGAACGAGCGGGATGTAC 59.865 52.381 0.00 0.00 0.00 2.90
772 812 1.404391 GAGAAGAACGAGCGGGATGTA 59.596 52.381 0.00 0.00 0.00 2.29
789 840 4.827284 GGATTTGGTTTTGAGAAGGTGAGA 59.173 41.667 0.00 0.00 0.00 3.27
794 845 2.352715 GCGGGATTTGGTTTTGAGAAGG 60.353 50.000 0.00 0.00 0.00 3.46
805 874 2.203070 CGGAGGAGCGGGATTTGG 60.203 66.667 0.00 0.00 0.00 3.28
838 907 3.528370 CGTAGGGGCGGAGACTGG 61.528 72.222 0.00 0.00 32.70 4.00
840 909 4.444081 AGCGTAGGGGCGGAGACT 62.444 66.667 0.00 0.00 38.18 3.24
907 976 4.315941 CGGGCGGATCTTAGGGGC 62.316 72.222 0.00 0.00 0.00 5.80
950 1019 4.096003 CGGCGGTGGATCTTGGGT 62.096 66.667 0.00 0.00 0.00 4.51
1308 1377 0.681243 GGAGGCAAGGTCATTCCACC 60.681 60.000 0.00 0.00 39.02 4.61
1317 1386 1.774856 ACAGTAAACAGGAGGCAAGGT 59.225 47.619 0.00 0.00 0.00 3.50
1334 1403 4.521146 AGGAGATGGCTACATGAAAACAG 58.479 43.478 0.00 0.00 37.47 3.16
1339 1408 2.625314 CGAGAGGAGATGGCTACATGAA 59.375 50.000 0.00 0.00 37.47 2.57
1340 1409 2.234143 CGAGAGGAGATGGCTACATGA 58.766 52.381 0.00 0.00 37.47 3.07
1415 1484 2.682494 GTCTCGGCCTACCCACCA 60.682 66.667 0.00 0.00 0.00 4.17
1479 1548 1.663074 GCGCAGATTAGAGAGCCCG 60.663 63.158 0.30 0.00 0.00 6.13
1482 1551 1.602668 CCTGAGCGCAGATTAGAGAGC 60.603 57.143 19.95 0.00 45.17 4.09
1539 1608 6.908870 TCACTTATGTATTCATCACACAGC 57.091 37.500 0.00 0.00 35.70 4.40
1570 1639 9.975218 ACCAGAACATATAGTTTACCAAAATCT 57.025 29.630 0.00 0.00 41.51 2.40
1573 1642 8.387813 AGGACCAGAACATATAGTTTACCAAAA 58.612 33.333 0.00 0.00 41.51 2.44
1574 1643 7.827236 CAGGACCAGAACATATAGTTTACCAAA 59.173 37.037 0.00 0.00 41.51 3.28
1575 1644 7.335627 CAGGACCAGAACATATAGTTTACCAA 58.664 38.462 0.00 0.00 41.51 3.67
1576 1645 6.631766 GCAGGACCAGAACATATAGTTTACCA 60.632 42.308 0.00 0.00 41.51 3.25
1577 1646 5.758784 GCAGGACCAGAACATATAGTTTACC 59.241 44.000 0.00 0.00 41.51 2.85
1578 1647 5.758784 GGCAGGACCAGAACATATAGTTTAC 59.241 44.000 0.00 0.00 38.49 2.01
1579 1648 5.665812 AGGCAGGACCAGAACATATAGTTTA 59.334 40.000 0.00 0.00 40.35 2.01
1580 1649 4.475016 AGGCAGGACCAGAACATATAGTTT 59.525 41.667 0.00 0.00 40.35 2.66
1581 1650 4.040755 AGGCAGGACCAGAACATATAGTT 58.959 43.478 0.00 0.00 42.23 2.24
1582 1651 3.643792 GAGGCAGGACCAGAACATATAGT 59.356 47.826 0.00 0.00 43.14 2.12
1583 1652 3.900601 AGAGGCAGGACCAGAACATATAG 59.099 47.826 0.00 0.00 43.14 1.31
1584 1653 3.928754 AGAGGCAGGACCAGAACATATA 58.071 45.455 0.00 0.00 43.14 0.86
1585 1654 2.769209 AGAGGCAGGACCAGAACATAT 58.231 47.619 0.00 0.00 43.14 1.78
1586 1655 2.254152 AGAGGCAGGACCAGAACATA 57.746 50.000 0.00 0.00 43.14 2.29
1587 1656 2.237392 GTTAGAGGCAGGACCAGAACAT 59.763 50.000 0.00 0.00 43.14 2.71
1588 1657 1.623811 GTTAGAGGCAGGACCAGAACA 59.376 52.381 0.00 0.00 43.14 3.18
1589 1658 1.623811 TGTTAGAGGCAGGACCAGAAC 59.376 52.381 0.00 0.00 43.14 3.01
1592 1661 1.556911 ACATGTTAGAGGCAGGACCAG 59.443 52.381 0.00 0.00 43.14 4.00
1626 1710 7.044181 TCAGTTCAGAATAGCAGGAAATAGTG 58.956 38.462 0.00 0.00 0.00 2.74
1705 1789 0.979665 TCTGCTCACTCTTTCCCTGG 59.020 55.000 0.00 0.00 0.00 4.45
1880 1964 4.693095 ACGGTCAACAATTGCAAAAGTTTT 59.307 33.333 14.85 0.00 0.00 2.43
1901 1985 3.390135 ACACACCAATTCAGTCAGTACG 58.610 45.455 0.00 0.00 0.00 3.67
2221 2305 3.806521 CCTGATCATTAAGACGCTTCTGG 59.193 47.826 0.00 0.00 29.98 3.86
2737 2823 8.067784 GTCACTCAACAACGAATTTATTTCAGA 58.932 33.333 0.00 0.00 33.66 3.27
3097 3193 6.683974 ATAGTGATACAAATGAACCACAGC 57.316 37.500 0.00 0.00 0.00 4.40
3205 3304 6.236017 ACAATTACAACCATTACACAGACG 57.764 37.500 0.00 0.00 0.00 4.18
3715 3815 0.250209 CATCTTCCTGGGATGCCGAG 60.250 60.000 0.00 0.00 34.97 4.63
4009 4109 8.090831 GCATACCTACATGATTTGAGATCAGTA 58.909 37.037 0.00 0.00 0.00 2.74
4387 4488 4.080582 CAGACACCTGGGTATTACCATTCA 60.081 45.833 14.71 3.06 41.02 2.57
4488 4589 6.530913 TCACTGAATCTCAAAAGAACTTCG 57.469 37.500 0.00 0.00 34.49 3.79
4749 4862 7.706179 GCACATATACATGCAAGTACCAAAAAT 59.294 33.333 3.52 0.00 41.65 1.82
5149 5262 8.759782 AGCTCTTGTTAATAGCCTAAAGAGTTA 58.240 33.333 10.35 0.00 41.61 2.24
5180 5293 5.293079 GGAGAAGATAACATCACTCAAGCAC 59.707 44.000 0.00 0.00 37.00 4.40
5274 5387 5.217978 TGTACACCCTAGTTTTGGTACTG 57.782 43.478 0.00 0.00 33.94 2.74
5311 5424 5.009610 AGTTGTAGGTTGTAAAATGGCACTG 59.990 40.000 0.00 0.00 0.00 3.66
5348 5461 2.642254 CCACCCAAGCATGGCTGTG 61.642 63.158 1.35 6.42 46.09 3.66
5376 5491 5.243426 ACAAGTTCACAAACATTAGCGTT 57.757 34.783 0.00 0.00 37.88 4.84
5436 5551 1.227999 CCCGAGCAGCAAAACGAAGA 61.228 55.000 0.00 0.00 0.00 2.87
5542 5657 0.186873 ATGGATGGGATGGGACTTGC 59.813 55.000 0.00 0.00 0.00 4.01
5557 5672 1.852309 ACATTACTGATGGCCCATGGA 59.148 47.619 15.22 0.00 40.21 3.41
5768 5883 6.768861 AGCTCAACTACTAGTAGTACCATCAG 59.231 42.308 30.89 20.53 44.96 2.90
5780 5895 4.944930 ACACCTACAGAGCTCAACTACTAG 59.055 45.833 17.77 4.70 0.00 2.57
5824 5939 9.169468 CAATTAGTTATTAATACAAGCCAAGCG 57.831 33.333 0.00 0.00 31.68 4.68
5841 5999 4.854173 TGCATCTTCCCAGCAATTAGTTA 58.146 39.130 0.00 0.00 34.97 2.24
5842 6000 3.700538 TGCATCTTCCCAGCAATTAGTT 58.299 40.909 0.00 0.00 34.97 2.24
5843 6001 3.370840 TGCATCTTCCCAGCAATTAGT 57.629 42.857 0.00 0.00 34.97 2.24
5844 6002 4.261909 GGAATGCATCTTCCCAGCAATTAG 60.262 45.833 7.74 0.00 42.15 1.73
5845 6003 3.638160 GGAATGCATCTTCCCAGCAATTA 59.362 43.478 7.74 0.00 42.15 1.40
5847 6005 2.037144 GGAATGCATCTTCCCAGCAAT 58.963 47.619 7.74 0.00 42.15 3.56
5848 6006 1.272592 TGGAATGCATCTTCCCAGCAA 60.273 47.619 15.02 0.00 43.47 3.91
5849 6007 0.332293 TGGAATGCATCTTCCCAGCA 59.668 50.000 15.02 0.00 43.47 4.41
5850 6008 1.700955 ATGGAATGCATCTTCCCAGC 58.299 50.000 15.02 0.00 43.47 4.85
5851 6009 3.067742 GTCAATGGAATGCATCTTCCCAG 59.932 47.826 15.02 6.45 43.47 4.45
5852 6010 3.025978 GTCAATGGAATGCATCTTCCCA 58.974 45.455 15.02 12.87 43.47 4.37
5853 6011 2.363359 GGTCAATGGAATGCATCTTCCC 59.637 50.000 15.02 8.17 43.47 3.97
5854 6012 3.067742 CAGGTCAATGGAATGCATCTTCC 59.932 47.826 11.51 11.51 44.23 3.46
5855 6013 3.490419 GCAGGTCAATGGAATGCATCTTC 60.490 47.826 0.00 0.00 37.73 2.87
5856 6014 2.429610 GCAGGTCAATGGAATGCATCTT 59.570 45.455 0.00 0.00 37.73 2.40
5857 6015 2.029623 GCAGGTCAATGGAATGCATCT 58.970 47.619 0.00 0.00 37.73 2.90
5858 6016 2.029623 AGCAGGTCAATGGAATGCATC 58.970 47.619 0.00 0.00 39.35 3.91
5859 6017 2.154567 AGCAGGTCAATGGAATGCAT 57.845 45.000 10.39 0.00 39.35 3.96
5860 6018 1.546923 CAAGCAGGTCAATGGAATGCA 59.453 47.619 10.39 0.00 39.35 3.96
5861 6019 1.547372 ACAAGCAGGTCAATGGAATGC 59.453 47.619 1.03 1.03 37.95 3.56
5862 6020 2.559668 ACACAAGCAGGTCAATGGAATG 59.440 45.455 0.00 0.00 0.00 2.67
5863 6021 2.559668 CACACAAGCAGGTCAATGGAAT 59.440 45.455 0.00 0.00 0.00 3.01
5864 6022 1.955778 CACACAAGCAGGTCAATGGAA 59.044 47.619 0.00 0.00 0.00 3.53
5865 6023 1.608055 CACACAAGCAGGTCAATGGA 58.392 50.000 0.00 0.00 0.00 3.41
5866 6024 0.038892 GCACACAAGCAGGTCAATGG 60.039 55.000 0.00 0.00 0.00 3.16
5867 6025 0.956633 AGCACACAAGCAGGTCAATG 59.043 50.000 0.00 0.00 36.85 2.82
5868 6026 2.566833 TAGCACACAAGCAGGTCAAT 57.433 45.000 0.00 0.00 36.85 2.57
5869 6027 2.038952 AGATAGCACACAAGCAGGTCAA 59.961 45.455 0.00 0.00 36.85 3.18
5870 6028 1.625315 AGATAGCACACAAGCAGGTCA 59.375 47.619 0.00 0.00 36.85 4.02
5871 6029 2.275318 GAGATAGCACACAAGCAGGTC 58.725 52.381 0.00 0.00 36.85 3.85
5872 6030 1.065854 GGAGATAGCACACAAGCAGGT 60.066 52.381 0.00 0.00 36.85 4.00
5873 6031 1.065926 TGGAGATAGCACACAAGCAGG 60.066 52.381 0.00 0.00 36.85 4.85
5874 6032 2.005451 GTGGAGATAGCACACAAGCAG 58.995 52.381 1.59 0.00 36.85 4.24
5875 6033 1.339055 GGTGGAGATAGCACACAAGCA 60.339 52.381 7.89 0.00 36.87 3.91
5876 6034 1.339055 TGGTGGAGATAGCACACAAGC 60.339 52.381 7.89 0.00 36.87 4.01
5877 6035 2.768253 TGGTGGAGATAGCACACAAG 57.232 50.000 7.89 0.00 36.87 3.16
5878 6036 3.719268 ATTGGTGGAGATAGCACACAA 57.281 42.857 7.89 0.00 36.87 3.33
5879 6037 3.264193 AGAATTGGTGGAGATAGCACACA 59.736 43.478 7.89 0.00 36.87 3.72
5880 6038 3.878778 AGAATTGGTGGAGATAGCACAC 58.121 45.455 0.00 0.00 0.00 3.82
5881 6039 4.019411 TGAAGAATTGGTGGAGATAGCACA 60.019 41.667 0.00 0.00 0.00 4.57
5882 6040 4.517285 TGAAGAATTGGTGGAGATAGCAC 58.483 43.478 0.00 0.00 0.00 4.40
5883 6041 4.842531 TGAAGAATTGGTGGAGATAGCA 57.157 40.909 0.00 0.00 0.00 3.49
5884 6042 5.824624 TGAATGAAGAATTGGTGGAGATAGC 59.175 40.000 0.00 0.00 0.00 2.97
5885 6043 6.018425 CGTGAATGAAGAATTGGTGGAGATAG 60.018 42.308 0.00 0.00 0.00 2.08
5886 6044 5.817296 CGTGAATGAAGAATTGGTGGAGATA 59.183 40.000 0.00 0.00 0.00 1.98
5887 6045 4.637534 CGTGAATGAAGAATTGGTGGAGAT 59.362 41.667 0.00 0.00 0.00 2.75
5888 6046 4.002982 CGTGAATGAAGAATTGGTGGAGA 58.997 43.478 0.00 0.00 0.00 3.71
5889 6047 4.002982 TCGTGAATGAAGAATTGGTGGAG 58.997 43.478 0.00 0.00 0.00 3.86
5890 6048 3.751175 GTCGTGAATGAAGAATTGGTGGA 59.249 43.478 0.00 0.00 0.00 4.02
5891 6049 3.753272 AGTCGTGAATGAAGAATTGGTGG 59.247 43.478 0.00 0.00 0.00 4.61
5892 6050 5.869344 TCTAGTCGTGAATGAAGAATTGGTG 59.131 40.000 0.00 0.00 0.00 4.17
5893 6051 6.037786 TCTAGTCGTGAATGAAGAATTGGT 57.962 37.500 0.00 0.00 0.00 3.67
5894 6052 6.968131 TTCTAGTCGTGAATGAAGAATTGG 57.032 37.500 0.00 0.00 0.00 3.16
5909 6067 5.332707 TGAGAAATGACACGATTCTAGTCG 58.667 41.667 1.49 1.49 46.56 4.18
5923 6081 5.945191 TGCATTTGGTGATACTGAGAAATGA 59.055 36.000 0.00 0.00 34.25 2.57
5956 6114 0.176680 CAGGATAGCCTCAGTGCGTT 59.823 55.000 0.00 0.00 44.80 4.84
5984 6142 5.645067 TCATGAACTGTAAATTCTGCCTCAG 59.355 40.000 0.00 0.00 0.00 3.35
6034 6192 4.574674 AGTCATGACAAGAATGGCCTAA 57.425 40.909 27.02 0.00 31.48 2.69
6085 6243 1.683917 GACGCTGACATAGGATCCTGT 59.316 52.381 25.28 15.72 0.00 4.00
6121 6279 2.359230 GAGAAGTTGCAGGCGGCT 60.359 61.111 5.25 5.25 45.15 5.52
6445 6603 1.205064 CTGAACTGAAACCAGCGCG 59.795 57.895 0.00 0.00 35.09 6.86
6450 6608 2.945008 CTCAACTGCTGAACTGAAACCA 59.055 45.455 0.00 0.00 32.17 3.67
6471 6629 3.157087 CATTCCTAGAGAGAGAGAGGCC 58.843 54.545 0.00 0.00 0.00 5.19
6475 6633 5.896106 TGCATTTCATTCCTAGAGAGAGAGA 59.104 40.000 0.00 0.00 0.00 3.10
6476 6634 6.159299 TGCATTTCATTCCTAGAGAGAGAG 57.841 41.667 0.00 0.00 0.00 3.20
6477 6635 6.325804 TGATGCATTTCATTCCTAGAGAGAGA 59.674 38.462 0.00 0.00 35.05 3.10
6478 6636 6.522946 TGATGCATTTCATTCCTAGAGAGAG 58.477 40.000 0.00 0.00 35.05 3.20
6479 6637 6.490241 TGATGCATTTCATTCCTAGAGAGA 57.510 37.500 0.00 0.00 35.05 3.10
6480 6638 6.935208 TCATGATGCATTTCATTCCTAGAGAG 59.065 38.462 0.00 0.00 34.09 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.