Multiple sequence alignment - TraesCS2A01G344200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G344200 chr2A 100.000 3876 0 0 1 3876 580855644 580851769 0.000000e+00 7158.0
1 TraesCS2A01G344200 chr2A 78.326 669 129 13 2195 2855 744530062 744529402 5.990000e-113 418.0
2 TraesCS2A01G344200 chr2A 73.040 523 111 27 2226 2733 46114373 46113866 1.440000e-34 158.0
3 TraesCS2A01G344200 chr2D 95.309 3155 88 12 751 3876 413780116 413776993 0.000000e+00 4951.0
4 TraesCS2A01G344200 chr2D 78.358 670 127 14 2195 2855 612438837 612438177 5.990000e-113 418.0
5 TraesCS2A01G344200 chr2D 85.143 175 18 1 330 504 413782135 413781969 5.150000e-39 172.0
6 TraesCS2A01G344200 chr2D 79.661 236 40 6 2226 2457 43798640 43798409 3.100000e-36 163.0
7 TraesCS2A01G344200 chr2B 94.434 3144 103 24 760 3876 486988257 486985159 0.000000e+00 4771.0
8 TraesCS2A01G344200 chr2B 78.625 669 127 13 2195 2855 747310694 747310034 2.770000e-116 429.0
9 TraesCS2A01G344200 chr2B 80.085 236 39 6 2226 2457 68423229 68422998 6.660000e-38 169.0
10 TraesCS2A01G344200 chr2B 90.476 84 7 1 366 449 311673343 311673425 4.090000e-20 110.0
11 TraesCS2A01G344200 chr2B 90.769 65 3 3 678 741 752588170 752588232 2.480000e-12 84.2
12 TraesCS2A01G344200 chr2B 97.368 38 1 0 704 741 513412722 513412759 8.990000e-07 65.8
13 TraesCS2A01G344200 chr4A 73.063 542 124 18 2226 2756 141130923 141130393 5.150000e-39 172.0
14 TraesCS2A01G344200 chr1B 88.136 118 12 2 332 449 151739534 151739649 5.220000e-29 139.0
15 TraesCS2A01G344200 chr1B 93.243 74 4 1 376 449 116767067 116766995 1.470000e-19 108.0
16 TraesCS2A01G344200 chr1B 89.412 85 7 2 366 449 429715400 429715483 5.300000e-19 106.0
17 TraesCS2A01G344200 chr4B 91.860 86 6 1 364 449 110242802 110242718 6.800000e-23 119.0
18 TraesCS2A01G344200 chr4B 89.286 84 7 2 366 449 30592069 30591988 1.900000e-18 104.0
19 TraesCS2A01G344200 chr5A 89.412 85 8 1 365 449 312583127 312583210 5.300000e-19 106.0
20 TraesCS2A01G344200 chr5A 89.157 83 9 0 2655 2737 433312029 433312111 1.900000e-18 104.0
21 TraesCS2A01G344200 chr6D 89.286 84 8 1 366 449 226910418 226910336 1.900000e-18 104.0
22 TraesCS2A01G344200 chr3D 77.848 158 33 2 2579 2735 517891838 517891994 3.190000e-16 97.1
23 TraesCS2A01G344200 chr3A 76.433 157 37 0 2579 2735 653521739 653521895 6.900000e-13 86.1
24 TraesCS2A01G344200 chr5D 90.476 63 6 0 679 741 43048378 43048440 2.480000e-12 84.2
25 TraesCS2A01G344200 chr7A 93.750 48 3 0 689 736 68019669 68019716 5.370000e-09 73.1
26 TraesCS2A01G344200 chr3B 90.196 51 5 0 693 743 791617236 791617186 2.500000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G344200 chr2A 580851769 580855644 3875 True 7158.0 7158 100.000 1 3876 1 chr2A.!!$R2 3875
1 TraesCS2A01G344200 chr2A 744529402 744530062 660 True 418.0 418 78.326 2195 2855 1 chr2A.!!$R3 660
2 TraesCS2A01G344200 chr2D 413776993 413782135 5142 True 2561.5 4951 90.226 330 3876 2 chr2D.!!$R3 3546
3 TraesCS2A01G344200 chr2D 612438177 612438837 660 True 418.0 418 78.358 2195 2855 1 chr2D.!!$R2 660
4 TraesCS2A01G344200 chr2B 486985159 486988257 3098 True 4771.0 4771 94.434 760 3876 1 chr2B.!!$R2 3116
5 TraesCS2A01G344200 chr2B 747310034 747310694 660 True 429.0 429 78.625 2195 2855 1 chr2B.!!$R3 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 2487 0.034896 GTCAGCGGGGAAGAAACAGA 59.965 55.0 0.0 0.0 0.0 3.41 F
849 2488 0.984230 TCAGCGGGGAAGAAACAGAT 59.016 50.0 0.0 0.0 0.0 2.90 F
1935 3574 0.543410 TCAAGGCTGGGGTCTACGAA 60.543 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 3547 0.105039 CCCCAGCCTTGACGTAGATC 59.895 60.000 0.00 0.0 0.00 2.75 R
2585 4224 1.536662 AGAACTCCTTCCACGGCCT 60.537 57.895 0.00 0.0 0.00 5.19 R
3673 5341 0.860618 GAAATCGTCCTCGTCGTCGG 60.861 60.000 1.55 0.0 38.33 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.120976 AACATACCCCCAAGCCTCT 57.879 52.632 0.00 0.00 0.00 3.69
19 20 2.280308 AACATACCCCCAAGCCTCTA 57.720 50.000 0.00 0.00 0.00 2.43
20 21 2.514726 ACATACCCCCAAGCCTCTAT 57.485 50.000 0.00 0.00 0.00 1.98
21 22 2.057922 ACATACCCCCAAGCCTCTATG 58.942 52.381 0.00 0.00 0.00 2.23
22 23 1.068121 ATACCCCCAAGCCTCTATGC 58.932 55.000 0.00 0.00 0.00 3.14
23 24 1.060163 TACCCCCAAGCCTCTATGCC 61.060 60.000 0.00 0.00 0.00 4.40
24 25 2.081161 CCCCCAAGCCTCTATGCCT 61.081 63.158 0.00 0.00 0.00 4.75
25 26 1.150081 CCCCAAGCCTCTATGCCTG 59.850 63.158 0.00 0.00 0.00 4.85
26 27 1.527844 CCCAAGCCTCTATGCCTGC 60.528 63.158 0.00 0.00 0.00 4.85
27 28 1.225426 CCAAGCCTCTATGCCTGCA 59.775 57.895 0.00 0.00 0.00 4.41
28 29 0.818445 CCAAGCCTCTATGCCTGCAG 60.818 60.000 6.78 6.78 0.00 4.41
29 30 0.818445 CAAGCCTCTATGCCTGCAGG 60.818 60.000 29.34 29.34 38.53 4.85
30 31 0.984961 AAGCCTCTATGCCTGCAGGA 60.985 55.000 37.21 21.13 37.39 3.86
31 32 0.984961 AGCCTCTATGCCTGCAGGAA 60.985 55.000 37.21 28.76 37.39 3.36
32 33 0.107017 GCCTCTATGCCTGCAGGAAA 60.107 55.000 37.21 23.31 37.39 3.13
33 34 1.683011 GCCTCTATGCCTGCAGGAAAA 60.683 52.381 37.21 20.61 37.39 2.29
34 35 2.295885 CCTCTATGCCTGCAGGAAAAG 58.704 52.381 37.21 25.96 37.39 2.27
35 36 2.092753 CCTCTATGCCTGCAGGAAAAGA 60.093 50.000 37.21 28.29 37.39 2.52
36 37 3.614092 CTCTATGCCTGCAGGAAAAGAA 58.386 45.455 37.21 14.71 37.39 2.52
37 38 4.205587 CTCTATGCCTGCAGGAAAAGAAT 58.794 43.478 37.21 19.11 37.39 2.40
38 39 3.949754 TCTATGCCTGCAGGAAAAGAATG 59.050 43.478 37.21 15.75 37.39 2.67
39 40 2.291209 TGCCTGCAGGAAAAGAATGA 57.709 45.000 37.21 4.45 37.39 2.57
40 41 1.888512 TGCCTGCAGGAAAAGAATGAC 59.111 47.619 37.21 14.56 37.39 3.06
41 42 1.888512 GCCTGCAGGAAAAGAATGACA 59.111 47.619 37.21 0.00 37.39 3.58
42 43 2.297033 GCCTGCAGGAAAAGAATGACAA 59.703 45.455 37.21 0.00 37.39 3.18
43 44 3.243839 GCCTGCAGGAAAAGAATGACAAA 60.244 43.478 37.21 0.00 37.39 2.83
44 45 4.562143 GCCTGCAGGAAAAGAATGACAAAT 60.562 41.667 37.21 0.00 37.39 2.32
45 46 4.927425 CCTGCAGGAAAAGAATGACAAATG 59.073 41.667 29.88 0.00 37.39 2.32
46 47 5.279106 CCTGCAGGAAAAGAATGACAAATGA 60.279 40.000 29.88 0.00 37.39 2.57
47 48 6.159299 TGCAGGAAAAGAATGACAAATGAA 57.841 33.333 0.00 0.00 0.00 2.57
48 49 6.580788 TGCAGGAAAAGAATGACAAATGAAA 58.419 32.000 0.00 0.00 0.00 2.69
49 50 7.218614 TGCAGGAAAAGAATGACAAATGAAAT 58.781 30.769 0.00 0.00 0.00 2.17
50 51 7.385752 TGCAGGAAAAGAATGACAAATGAAATC 59.614 33.333 0.00 0.00 0.00 2.17
51 52 7.148523 GCAGGAAAAGAATGACAAATGAAATCC 60.149 37.037 0.00 0.00 0.00 3.01
52 53 7.874016 CAGGAAAAGAATGACAAATGAAATCCA 59.126 33.333 0.00 0.00 0.00 3.41
53 54 8.431222 AGGAAAAGAATGACAAATGAAATCCAA 58.569 29.630 0.00 0.00 0.00 3.53
54 55 9.223099 GGAAAAGAATGACAAATGAAATCCAAT 57.777 29.630 0.00 0.00 0.00 3.16
56 57 8.556213 AAAGAATGACAAATGAAATCCAATGG 57.444 30.769 0.00 0.00 0.00 3.16
57 58 6.110707 AGAATGACAAATGAAATCCAATGGC 58.889 36.000 0.00 0.00 0.00 4.40
58 59 5.687166 ATGACAAATGAAATCCAATGGCT 57.313 34.783 0.00 0.00 0.00 4.75
59 60 4.823157 TGACAAATGAAATCCAATGGCTG 58.177 39.130 0.00 0.00 0.00 4.85
61 62 3.583966 ACAAATGAAATCCAATGGCTGGT 59.416 39.130 0.00 0.00 46.51 4.00
62 63 4.041938 ACAAATGAAATCCAATGGCTGGTT 59.958 37.500 0.00 0.00 46.51 3.67
63 64 4.476628 AATGAAATCCAATGGCTGGTTC 57.523 40.909 0.00 0.00 46.51 3.62
64 65 2.886913 TGAAATCCAATGGCTGGTTCA 58.113 42.857 0.00 0.00 46.51 3.18
65 66 3.443052 TGAAATCCAATGGCTGGTTCAT 58.557 40.909 0.00 0.00 46.51 2.57
66 67 4.608269 TGAAATCCAATGGCTGGTTCATA 58.392 39.130 0.00 0.00 46.51 2.15
67 68 4.402155 TGAAATCCAATGGCTGGTTCATAC 59.598 41.667 0.00 0.00 46.51 2.39
68 69 3.668141 ATCCAATGGCTGGTTCATACA 57.332 42.857 0.00 0.00 46.51 2.29
69 70 3.003394 TCCAATGGCTGGTTCATACAG 57.997 47.619 0.00 0.00 46.51 2.74
75 76 3.975992 CTGGTTCATACAGCAACGC 57.024 52.632 0.00 0.00 0.00 4.84
76 77 0.095245 CTGGTTCATACAGCAACGCG 59.905 55.000 3.53 3.53 0.00 6.01
77 78 1.226018 GGTTCATACAGCAACGCGC 60.226 57.895 5.73 0.00 42.91 6.86
78 79 1.495509 GTTCATACAGCAACGCGCA 59.504 52.632 5.73 0.00 46.13 6.09
79 80 0.110419 GTTCATACAGCAACGCGCAA 60.110 50.000 5.73 0.00 46.13 4.85
80 81 0.588737 TTCATACAGCAACGCGCAAA 59.411 45.000 5.73 0.00 46.13 3.68
81 82 0.801872 TCATACAGCAACGCGCAAAT 59.198 45.000 5.73 0.00 46.13 2.32
82 83 1.182673 CATACAGCAACGCGCAAATC 58.817 50.000 5.73 0.00 46.13 2.17
83 84 0.098728 ATACAGCAACGCGCAAATCC 59.901 50.000 5.73 0.00 46.13 3.01
84 85 0.953471 TACAGCAACGCGCAAATCCT 60.953 50.000 5.73 0.00 46.13 3.24
85 86 1.081242 CAGCAACGCGCAAATCCTT 60.081 52.632 5.73 0.00 46.13 3.36
86 87 1.067199 CAGCAACGCGCAAATCCTTC 61.067 55.000 5.73 0.00 46.13 3.46
87 88 2.145905 GCAACGCGCAAATCCTTCG 61.146 57.895 5.73 0.00 41.79 3.79
88 89 2.145905 CAACGCGCAAATCCTTCGC 61.146 57.895 5.73 0.00 44.76 4.70
89 90 3.322706 AACGCGCAAATCCTTCGCC 62.323 57.895 5.73 0.00 45.34 5.54
90 91 4.868900 CGCGCAAATCCTTCGCCG 62.869 66.667 8.75 0.00 45.34 6.46
92 93 3.499737 CGCAAATCCTTCGCCGCT 61.500 61.111 0.00 0.00 0.00 5.52
93 94 2.405191 GCAAATCCTTCGCCGCTC 59.595 61.111 0.00 0.00 0.00 5.03
94 95 2.109126 GCAAATCCTTCGCCGCTCT 61.109 57.895 0.00 0.00 0.00 4.09
95 96 1.717937 CAAATCCTTCGCCGCTCTG 59.282 57.895 0.00 0.00 0.00 3.35
96 97 2.109126 AAATCCTTCGCCGCTCTGC 61.109 57.895 0.00 0.00 0.00 4.26
97 98 2.527951 AAATCCTTCGCCGCTCTGCT 62.528 55.000 0.00 0.00 0.00 4.24
98 99 1.676678 AATCCTTCGCCGCTCTGCTA 61.677 55.000 0.00 0.00 0.00 3.49
99 100 2.356818 ATCCTTCGCCGCTCTGCTAC 62.357 60.000 0.00 0.00 0.00 3.58
100 101 2.181777 CTTCGCCGCTCTGCTACA 59.818 61.111 0.00 0.00 0.00 2.74
101 102 1.446099 CTTCGCCGCTCTGCTACAA 60.446 57.895 0.00 0.00 0.00 2.41
102 103 0.807667 CTTCGCCGCTCTGCTACAAT 60.808 55.000 0.00 0.00 0.00 2.71
103 104 1.083806 TTCGCCGCTCTGCTACAATG 61.084 55.000 0.00 0.00 0.00 2.82
104 105 2.528743 CGCCGCTCTGCTACAATGG 61.529 63.158 0.00 0.00 0.00 3.16
105 106 2.182842 GCCGCTCTGCTACAATGGG 61.183 63.158 0.00 0.00 0.00 4.00
106 107 1.221840 CCGCTCTGCTACAATGGGT 59.778 57.895 0.00 0.00 0.00 4.51
107 108 1.091771 CCGCTCTGCTACAATGGGTG 61.092 60.000 0.00 0.00 0.00 4.61
108 109 0.108186 CGCTCTGCTACAATGGGTGA 60.108 55.000 0.00 0.00 0.00 4.02
109 110 1.675714 CGCTCTGCTACAATGGGTGAA 60.676 52.381 0.00 0.00 0.00 3.18
110 111 2.012673 GCTCTGCTACAATGGGTGAAG 58.987 52.381 0.00 0.00 0.00 3.02
111 112 2.636830 CTCTGCTACAATGGGTGAAGG 58.363 52.381 0.00 0.00 0.00 3.46
112 113 2.237143 CTCTGCTACAATGGGTGAAGGA 59.763 50.000 0.00 0.00 0.00 3.36
113 114 2.237143 TCTGCTACAATGGGTGAAGGAG 59.763 50.000 0.00 0.00 0.00 3.69
114 115 1.985159 TGCTACAATGGGTGAAGGAGT 59.015 47.619 0.00 0.00 0.00 3.85
115 116 2.375174 TGCTACAATGGGTGAAGGAGTT 59.625 45.455 0.00 0.00 0.00 3.01
116 117 3.010420 GCTACAATGGGTGAAGGAGTTC 58.990 50.000 0.00 0.00 0.00 3.01
117 118 3.559171 GCTACAATGGGTGAAGGAGTTCA 60.559 47.826 0.00 0.00 40.55 3.18
118 119 3.146104 ACAATGGGTGAAGGAGTTCAG 57.854 47.619 0.00 0.00 43.55 3.02
119 120 2.711009 ACAATGGGTGAAGGAGTTCAGA 59.289 45.455 0.00 0.00 43.55 3.27
120 121 3.331889 ACAATGGGTGAAGGAGTTCAGAT 59.668 43.478 0.00 0.00 43.55 2.90
121 122 3.641434 ATGGGTGAAGGAGTTCAGATG 57.359 47.619 0.00 0.00 43.55 2.90
122 123 2.619931 TGGGTGAAGGAGTTCAGATGA 58.380 47.619 0.00 0.00 43.55 2.92
123 124 3.184628 TGGGTGAAGGAGTTCAGATGAT 58.815 45.455 0.00 0.00 43.55 2.45
124 125 3.054875 TGGGTGAAGGAGTTCAGATGATG 60.055 47.826 0.00 0.00 43.55 3.07
125 126 3.198635 GGGTGAAGGAGTTCAGATGATGA 59.801 47.826 0.00 0.00 43.55 2.92
126 127 4.141528 GGGTGAAGGAGTTCAGATGATGAT 60.142 45.833 0.00 0.00 43.55 2.45
127 128 5.070981 GGGTGAAGGAGTTCAGATGATGATA 59.929 44.000 0.00 0.00 43.55 2.15
128 129 5.988561 GGTGAAGGAGTTCAGATGATGATAC 59.011 44.000 0.00 0.00 43.55 2.24
129 130 6.183360 GGTGAAGGAGTTCAGATGATGATACT 60.183 42.308 0.00 0.00 43.55 2.12
130 131 7.014711 GGTGAAGGAGTTCAGATGATGATACTA 59.985 40.741 0.00 0.00 43.55 1.82
131 132 7.865385 GTGAAGGAGTTCAGATGATGATACTAC 59.135 40.741 0.00 0.00 43.55 2.73
132 133 7.782168 TGAAGGAGTTCAGATGATGATACTACT 59.218 37.037 0.00 0.00 39.71 2.57
133 134 8.546083 AAGGAGTTCAGATGATGATACTACTT 57.454 34.615 4.66 4.66 40.99 2.24
134 135 8.546083 AGGAGTTCAGATGATGATACTACTTT 57.454 34.615 0.00 0.00 37.12 2.66
135 136 8.986991 AGGAGTTCAGATGATGATACTACTTTT 58.013 33.333 0.00 0.00 37.12 2.27
136 137 9.255304 GGAGTTCAGATGATGATACTACTTTTC 57.745 37.037 0.00 0.00 37.89 2.29
176 177 9.829507 TTTTTGGTCTCATTGTTTGTATTCATT 57.170 25.926 0.00 0.00 0.00 2.57
177 178 9.829507 TTTTGGTCTCATTGTTTGTATTCATTT 57.170 25.926 0.00 0.00 0.00 2.32
178 179 9.474920 TTTGGTCTCATTGTTTGTATTCATTTC 57.525 29.630 0.00 0.00 0.00 2.17
179 180 8.175925 TGGTCTCATTGTTTGTATTCATTTCA 57.824 30.769 0.00 0.00 0.00 2.69
180 181 8.081633 TGGTCTCATTGTTTGTATTCATTTCAC 58.918 33.333 0.00 0.00 0.00 3.18
181 182 8.299570 GGTCTCATTGTTTGTATTCATTTCACT 58.700 33.333 0.00 0.00 0.00 3.41
182 183 9.334693 GTCTCATTGTTTGTATTCATTTCACTC 57.665 33.333 0.00 0.00 0.00 3.51
183 184 9.288576 TCTCATTGTTTGTATTCATTTCACTCT 57.711 29.630 0.00 0.00 0.00 3.24
184 185 9.903682 CTCATTGTTTGTATTCATTTCACTCTT 57.096 29.630 0.00 0.00 0.00 2.85
185 186 9.681692 TCATTGTTTGTATTCATTTCACTCTTG 57.318 29.630 0.00 0.00 0.00 3.02
186 187 8.918658 CATTGTTTGTATTCATTTCACTCTTGG 58.081 33.333 0.00 0.00 0.00 3.61
187 188 6.980593 TGTTTGTATTCATTTCACTCTTGGG 58.019 36.000 0.00 0.00 0.00 4.12
188 189 6.549364 TGTTTGTATTCATTTCACTCTTGGGT 59.451 34.615 0.00 0.00 0.00 4.51
189 190 6.817765 TTGTATTCATTTCACTCTTGGGTC 57.182 37.500 0.00 0.00 0.00 4.46
190 191 6.126863 TGTATTCATTTCACTCTTGGGTCT 57.873 37.500 0.00 0.00 0.00 3.85
191 192 6.542821 TGTATTCATTTCACTCTTGGGTCTT 58.457 36.000 0.00 0.00 0.00 3.01
192 193 6.655003 TGTATTCATTTCACTCTTGGGTCTTC 59.345 38.462 0.00 0.00 0.00 2.87
193 194 4.705110 TCATTTCACTCTTGGGTCTTCA 57.295 40.909 0.00 0.00 0.00 3.02
194 195 4.389374 TCATTTCACTCTTGGGTCTTCAC 58.611 43.478 0.00 0.00 0.00 3.18
195 196 2.930826 TTCACTCTTGGGTCTTCACC 57.069 50.000 0.00 0.00 42.90 4.02
205 206 2.640316 GGTCTTCACCCAGTGAGTTT 57.360 50.000 0.00 0.00 43.69 2.66
206 207 2.222027 GGTCTTCACCCAGTGAGTTTG 58.778 52.381 0.00 0.00 43.69 2.93
207 208 2.421529 GGTCTTCACCCAGTGAGTTTGT 60.422 50.000 0.00 0.00 43.69 2.83
208 209 2.614057 GTCTTCACCCAGTGAGTTTGTG 59.386 50.000 0.00 0.00 43.69 3.33
209 210 1.949525 CTTCACCCAGTGAGTTTGTGG 59.050 52.381 0.00 0.00 43.69 4.17
210 211 0.916086 TCACCCAGTGAGTTTGTGGT 59.084 50.000 0.00 0.00 37.67 4.16
211 212 2.120312 TCACCCAGTGAGTTTGTGGTA 58.880 47.619 0.00 0.00 37.67 3.25
212 213 2.104111 TCACCCAGTGAGTTTGTGGTAG 59.896 50.000 0.00 0.00 37.67 3.18
213 214 2.124411 ACCCAGTGAGTTTGTGGTAGT 58.876 47.619 0.00 0.00 0.00 2.73
214 215 2.508300 ACCCAGTGAGTTTGTGGTAGTT 59.492 45.455 0.00 0.00 0.00 2.24
215 216 2.878406 CCCAGTGAGTTTGTGGTAGTTG 59.122 50.000 0.00 0.00 0.00 3.16
216 217 2.878406 CCAGTGAGTTTGTGGTAGTTGG 59.122 50.000 0.00 0.00 0.00 3.77
217 218 3.541632 CAGTGAGTTTGTGGTAGTTGGT 58.458 45.455 0.00 0.00 0.00 3.67
218 219 3.945285 CAGTGAGTTTGTGGTAGTTGGTT 59.055 43.478 0.00 0.00 0.00 3.67
219 220 3.945285 AGTGAGTTTGTGGTAGTTGGTTG 59.055 43.478 0.00 0.00 0.00 3.77
220 221 2.685897 TGAGTTTGTGGTAGTTGGTTGC 59.314 45.455 0.00 0.00 0.00 4.17
221 222 2.028876 AGTTTGTGGTAGTTGGTTGCC 58.971 47.619 0.00 0.00 0.00 4.52
222 223 2.028876 GTTTGTGGTAGTTGGTTGCCT 58.971 47.619 0.00 0.00 0.00 4.75
223 224 1.686355 TTGTGGTAGTTGGTTGCCTG 58.314 50.000 0.00 0.00 0.00 4.85
224 225 0.548989 TGTGGTAGTTGGTTGCCTGT 59.451 50.000 0.00 0.00 0.00 4.00
225 226 1.769465 TGTGGTAGTTGGTTGCCTGTA 59.231 47.619 0.00 0.00 0.00 2.74
226 227 2.373836 TGTGGTAGTTGGTTGCCTGTAT 59.626 45.455 0.00 0.00 0.00 2.29
227 228 3.583526 TGTGGTAGTTGGTTGCCTGTATA 59.416 43.478 0.00 0.00 0.00 1.47
228 229 4.189231 GTGGTAGTTGGTTGCCTGTATAG 58.811 47.826 0.00 0.00 0.00 1.31
229 230 3.841845 TGGTAGTTGGTTGCCTGTATAGT 59.158 43.478 0.00 0.00 0.00 2.12
230 231 4.287585 TGGTAGTTGGTTGCCTGTATAGTT 59.712 41.667 0.00 0.00 0.00 2.24
231 232 4.874396 GGTAGTTGGTTGCCTGTATAGTTC 59.126 45.833 0.00 0.00 0.00 3.01
232 233 4.910458 AGTTGGTTGCCTGTATAGTTCT 57.090 40.909 0.00 0.00 0.00 3.01
233 234 5.242795 AGTTGGTTGCCTGTATAGTTCTT 57.757 39.130 0.00 0.00 0.00 2.52
234 235 5.631119 AGTTGGTTGCCTGTATAGTTCTTT 58.369 37.500 0.00 0.00 0.00 2.52
235 236 6.068670 AGTTGGTTGCCTGTATAGTTCTTTT 58.931 36.000 0.00 0.00 0.00 2.27
236 237 6.206829 AGTTGGTTGCCTGTATAGTTCTTTTC 59.793 38.462 0.00 0.00 0.00 2.29
237 238 5.007682 TGGTTGCCTGTATAGTTCTTTTCC 58.992 41.667 0.00 0.00 0.00 3.13
238 239 5.222048 TGGTTGCCTGTATAGTTCTTTTCCT 60.222 40.000 0.00 0.00 0.00 3.36
239 240 5.710567 GGTTGCCTGTATAGTTCTTTTCCTT 59.289 40.000 0.00 0.00 0.00 3.36
240 241 6.208797 GGTTGCCTGTATAGTTCTTTTCCTTT 59.791 38.462 0.00 0.00 0.00 3.11
241 242 7.392393 GGTTGCCTGTATAGTTCTTTTCCTTTA 59.608 37.037 0.00 0.00 0.00 1.85
242 243 8.451748 GTTGCCTGTATAGTTCTTTTCCTTTAG 58.548 37.037 0.00 0.00 0.00 1.85
243 244 7.686434 TGCCTGTATAGTTCTTTTCCTTTAGT 58.314 34.615 0.00 0.00 0.00 2.24
244 245 8.161425 TGCCTGTATAGTTCTTTTCCTTTAGTT 58.839 33.333 0.00 0.00 0.00 2.24
245 246 9.011095 GCCTGTATAGTTCTTTTCCTTTAGTTT 57.989 33.333 0.00 0.00 0.00 2.66
267 268 9.778741 AGTTTTTCTCTTTTCTTTTTGAAACCT 57.221 25.926 0.00 0.00 43.55 3.50
270 271 9.554395 TTTTCTCTTTTCTTTTTGAAACCTTGT 57.446 25.926 0.00 0.00 43.55 3.16
315 316 9.454585 AATTAAATACGCAACAGATTCATGATG 57.545 29.630 0.00 0.00 0.00 3.07
316 317 6.441093 AAATACGCAACAGATTCATGATGT 57.559 33.333 0.00 0.00 0.00 3.06
317 318 6.441093 AATACGCAACAGATTCATGATGTT 57.559 33.333 7.25 7.25 37.64 2.71
318 319 4.771590 ACGCAACAGATTCATGATGTTT 57.228 36.364 9.88 0.00 35.04 2.83
319 320 5.125100 ACGCAACAGATTCATGATGTTTT 57.875 34.783 9.88 0.00 35.04 2.43
320 321 5.531634 ACGCAACAGATTCATGATGTTTTT 58.468 33.333 9.88 0.00 35.04 1.94
321 322 5.630680 ACGCAACAGATTCATGATGTTTTTC 59.369 36.000 9.88 3.50 35.04 2.29
322 323 5.860182 CGCAACAGATTCATGATGTTTTTCT 59.140 36.000 9.88 0.00 35.04 2.52
323 324 6.364165 CGCAACAGATTCATGATGTTTTTCTT 59.636 34.615 9.88 0.00 35.04 2.52
324 325 7.538334 CGCAACAGATTCATGATGTTTTTCTTA 59.462 33.333 9.88 0.00 35.04 2.10
325 326 9.195411 GCAACAGATTCATGATGTTTTTCTTAA 57.805 29.630 9.88 0.00 35.04 1.85
352 353 6.730960 AAAGATTAGCGTTCAATTAACCGA 57.269 33.333 0.00 0.00 34.33 4.69
354 355 3.976468 TTAGCGTTCAATTAACCGACG 57.024 42.857 0.00 0.00 34.33 5.12
388 389 6.552445 AGACTCCTACATCAATGCTACTTT 57.448 37.500 0.00 0.00 0.00 2.66
393 394 8.978472 ACTCCTACATCAATGCTACTTTAGTTA 58.022 33.333 0.00 0.00 0.00 2.24
394 395 9.988815 CTCCTACATCAATGCTACTTTAGTTAT 57.011 33.333 0.00 0.00 0.00 1.89
449 450 1.284198 ACTCTTGCATTGGAGATGCCT 59.716 47.619 15.55 0.00 43.94 4.75
464 465 5.360649 AGATGCCTTAAGGTTTACTCCTC 57.639 43.478 22.55 7.41 36.74 3.71
467 468 5.672421 TGCCTTAAGGTTTACTCCTCTAC 57.328 43.478 22.55 1.95 36.74 2.59
468 469 5.339477 TGCCTTAAGGTTTACTCCTCTACT 58.661 41.667 22.55 0.00 36.74 2.57
477 478 8.272659 AGGTTTACTCCTCTACTTTTTAAGGT 57.727 34.615 0.00 0.00 31.32 3.50
478 479 8.721479 AGGTTTACTCCTCTACTTTTTAAGGTT 58.279 33.333 0.00 0.00 31.32 3.50
480 481 8.706936 GTTTACTCCTCTACTTTTTAAGGTTCG 58.293 37.037 0.00 0.00 0.00 3.95
481 482 6.661304 ACTCCTCTACTTTTTAAGGTTCGA 57.339 37.500 0.00 0.00 0.00 3.71
504 505 9.011095 TCGATTAGAGTTGTCCTTATATAGGTG 57.989 37.037 0.00 0.00 45.03 4.00
505 506 8.794553 CGATTAGAGTTGTCCTTATATAGGTGT 58.205 37.037 0.00 0.00 45.03 4.16
508 509 7.836479 AGAGTTGTCCTTATATAGGTGTACC 57.164 40.000 0.00 0.00 45.03 3.34
509 510 7.359849 AGAGTTGTCCTTATATAGGTGTACCA 58.640 38.462 3.56 0.00 45.03 3.25
510 511 8.011290 AGAGTTGTCCTTATATAGGTGTACCAT 58.989 37.037 3.56 0.00 45.03 3.55
511 512 8.562949 AGTTGTCCTTATATAGGTGTACCATT 57.437 34.615 3.56 0.00 45.03 3.16
512 513 8.429641 AGTTGTCCTTATATAGGTGTACCATTG 58.570 37.037 3.56 0.00 45.03 2.82
513 514 6.765403 TGTCCTTATATAGGTGTACCATTGC 58.235 40.000 3.56 0.00 45.03 3.56
514 515 6.171213 GTCCTTATATAGGTGTACCATTGCC 58.829 44.000 3.56 0.00 45.03 4.52
515 516 5.249852 TCCTTATATAGGTGTACCATTGCCC 59.750 44.000 3.56 0.00 45.03 5.36
516 517 5.013704 CCTTATATAGGTGTACCATTGCCCA 59.986 44.000 3.56 0.00 39.39 5.36
517 518 6.297010 CCTTATATAGGTGTACCATTGCCCAT 60.297 42.308 3.56 0.00 39.39 4.00
518 519 2.727123 TAGGTGTACCATTGCCCATG 57.273 50.000 3.56 0.00 38.89 3.66
544 545 7.567571 GCTTCAGCCTTTTTGAATAAGAAAAC 58.432 34.615 0.00 0.00 34.33 2.43
545 546 7.567590 GCTTCAGCCTTTTTGAATAAGAAAACG 60.568 37.037 0.00 0.00 34.33 3.60
546 547 6.212955 TCAGCCTTTTTGAATAAGAAAACGG 58.787 36.000 0.00 0.00 35.70 4.44
547 548 5.983118 CAGCCTTTTTGAATAAGAAAACGGT 59.017 36.000 0.00 0.00 35.28 4.83
549 550 5.980715 GCCTTTTTGAATAAGAAAACGGTGA 59.019 36.000 0.00 0.00 35.28 4.02
551 552 7.359181 GCCTTTTTGAATAAGAAAACGGTGATG 60.359 37.037 0.00 0.00 35.28 3.07
552 553 7.359181 CCTTTTTGAATAAGAAAACGGTGATGC 60.359 37.037 0.00 0.00 30.68 3.91
554 555 4.075682 TGAATAAGAAAACGGTGATGCCA 58.924 39.130 0.00 0.00 36.97 4.92
555 556 4.083003 TGAATAAGAAAACGGTGATGCCAC 60.083 41.667 0.00 0.00 42.46 5.01
556 557 1.686355 AAGAAAACGGTGATGCCACA 58.314 45.000 0.00 0.00 44.93 4.17
557 558 0.951558 AGAAAACGGTGATGCCACAC 59.048 50.000 0.00 2.38 44.93 3.82
558 559 0.385473 GAAAACGGTGATGCCACACG 60.385 55.000 0.00 0.00 44.93 4.49
559 560 1.791103 AAAACGGTGATGCCACACGG 61.791 55.000 13.36 13.36 44.93 4.94
560 561 2.668185 AAACGGTGATGCCACACGGA 62.668 55.000 18.97 0.00 44.93 4.69
562 563 1.142965 CGGTGATGCCACACGGATA 59.857 57.895 10.71 0.00 44.93 2.59
563 564 0.461163 CGGTGATGCCACACGGATAA 60.461 55.000 10.71 0.00 44.93 1.75
568 569 4.381505 GGTGATGCCACACGGATAATTTTT 60.382 41.667 0.00 0.00 44.93 1.94
589 590 0.679505 ACAGAGTTTACGAGCTGGCA 59.320 50.000 0.00 0.00 32.82 4.92
590 591 1.071605 CAGAGTTTACGAGCTGGCAC 58.928 55.000 0.00 0.00 0.00 5.01
591 592 0.679505 AGAGTTTACGAGCTGGCACA 59.320 50.000 0.00 0.00 0.00 4.57
592 593 1.276421 AGAGTTTACGAGCTGGCACAT 59.724 47.619 0.00 0.00 38.20 3.21
594 595 1.156736 GTTTACGAGCTGGCACATGT 58.843 50.000 0.00 0.00 38.20 3.21
596 597 0.673333 TTACGAGCTGGCACATGTGG 60.673 55.000 26.55 11.74 38.20 4.17
605 606 2.338015 GCACATGTGGCAGAGTGGG 61.338 63.158 26.55 4.27 32.80 4.61
606 607 1.676635 CACATGTGGCAGAGTGGGG 60.677 63.158 18.51 0.00 0.00 4.96
607 608 2.044650 CATGTGGCAGAGTGGGGG 60.045 66.667 0.00 0.00 0.00 5.40
626 627 2.753701 TGGTGTTACCCAGCGCAT 59.246 55.556 11.47 0.00 44.68 4.73
627 628 1.673993 TGGTGTTACCCAGCGCATG 60.674 57.895 11.47 4.88 44.68 4.06
628 629 1.674322 GGTGTTACCCAGCGCATGT 60.674 57.895 11.47 5.88 30.04 3.21
629 630 0.391927 GGTGTTACCCAGCGCATGTA 60.392 55.000 11.47 4.74 30.04 2.29
630 631 1.006832 GTGTTACCCAGCGCATGTAG 58.993 55.000 11.47 1.61 0.00 2.74
631 632 0.107897 TGTTACCCAGCGCATGTAGG 60.108 55.000 11.47 4.78 0.00 3.18
632 633 0.177141 GTTACCCAGCGCATGTAGGA 59.823 55.000 11.47 0.00 0.00 2.94
633 634 1.128200 TTACCCAGCGCATGTAGGAT 58.872 50.000 11.47 0.00 0.00 3.24
634 635 1.128200 TACCCAGCGCATGTAGGATT 58.872 50.000 11.47 0.00 0.00 3.01
635 636 1.128200 ACCCAGCGCATGTAGGATTA 58.872 50.000 11.47 0.00 0.00 1.75
636 637 1.699634 ACCCAGCGCATGTAGGATTAT 59.300 47.619 11.47 0.00 0.00 1.28
637 638 2.106511 ACCCAGCGCATGTAGGATTATT 59.893 45.455 11.47 0.00 0.00 1.40
638 639 2.744202 CCCAGCGCATGTAGGATTATTC 59.256 50.000 11.47 0.00 0.00 1.75
640 641 4.005650 CCAGCGCATGTAGGATTATTCAT 58.994 43.478 11.47 0.00 0.00 2.57
641 642 5.178061 CCAGCGCATGTAGGATTATTCATA 58.822 41.667 11.47 0.00 0.00 2.15
642 643 5.643348 CCAGCGCATGTAGGATTATTCATAA 59.357 40.000 11.47 0.00 0.00 1.90
643 644 6.183360 CCAGCGCATGTAGGATTATTCATAAG 60.183 42.308 11.47 0.00 0.00 1.73
645 646 5.874810 GCGCATGTAGGATTATTCATAAGGA 59.125 40.000 0.30 0.00 0.00 3.36
646 647 6.371548 GCGCATGTAGGATTATTCATAAGGAA 59.628 38.462 0.30 0.00 40.46 3.36
647 648 7.094805 GCGCATGTAGGATTATTCATAAGGAAA 60.095 37.037 0.30 0.00 39.39 3.13
654 655 6.998673 AGGATTATTCATAAGGAAAAGACCGG 59.001 38.462 0.00 0.00 39.39 5.28
655 656 6.294010 GGATTATTCATAAGGAAAAGACCGGC 60.294 42.308 0.00 0.00 39.39 6.13
656 657 3.426787 TTCATAAGGAAAAGACCGGCA 57.573 42.857 0.00 0.00 30.98 5.69
657 658 2.985896 TCATAAGGAAAAGACCGGCAG 58.014 47.619 0.00 0.00 34.73 4.85
658 659 1.401905 CATAAGGAAAAGACCGGCAGC 59.598 52.381 0.00 0.00 34.73 5.25
659 660 0.690762 TAAGGAAAAGACCGGCAGCT 59.309 50.000 0.00 0.00 34.73 4.24
660 661 0.690762 AAGGAAAAGACCGGCAGCTA 59.309 50.000 0.00 0.00 34.73 3.32
661 662 0.690762 AGGAAAAGACCGGCAGCTAA 59.309 50.000 0.00 0.00 34.73 3.09
662 663 1.073284 AGGAAAAGACCGGCAGCTAAA 59.927 47.619 0.00 0.00 34.73 1.85
664 665 2.492088 GGAAAAGACCGGCAGCTAAAAT 59.508 45.455 0.00 0.00 0.00 1.82
665 666 3.501950 GAAAAGACCGGCAGCTAAAATG 58.498 45.455 0.00 0.00 0.00 2.32
666 667 2.489938 AAGACCGGCAGCTAAAATGA 57.510 45.000 0.00 0.00 0.00 2.57
668 669 2.084546 AGACCGGCAGCTAAAATGAAC 58.915 47.619 0.00 0.00 0.00 3.18
669 670 2.084546 GACCGGCAGCTAAAATGAACT 58.915 47.619 0.00 0.00 0.00 3.01
677 678 4.093514 CAGCTAAAATGAACTGCATGTCG 58.906 43.478 0.00 0.00 37.28 4.35
678 679 2.848302 GCTAAAATGAACTGCATGTCGC 59.152 45.455 0.00 0.00 37.28 5.19
691 692 4.395581 GCATGTCGCATTATGAAGGTAG 57.604 45.455 0.00 0.00 41.79 3.18
692 693 3.809832 GCATGTCGCATTATGAAGGTAGT 59.190 43.478 0.00 0.00 41.79 2.73
693 694 4.988540 GCATGTCGCATTATGAAGGTAGTA 59.011 41.667 0.00 0.00 41.79 1.82
695 696 6.183360 GCATGTCGCATTATGAAGGTAGTATC 60.183 42.308 0.00 0.00 41.79 2.24
696 697 6.399639 TGTCGCATTATGAAGGTAGTATCA 57.600 37.500 0.00 0.00 0.00 2.15
697 698 6.993079 TGTCGCATTATGAAGGTAGTATCAT 58.007 36.000 0.00 0.00 39.50 2.45
698 699 8.117813 TGTCGCATTATGAAGGTAGTATCATA 57.882 34.615 0.00 0.00 37.46 2.15
699 700 8.244113 TGTCGCATTATGAAGGTAGTATCATAG 58.756 37.037 0.00 0.00 39.12 2.23
700 701 8.459635 GTCGCATTATGAAGGTAGTATCATAGA 58.540 37.037 0.00 0.00 39.12 1.98
702 703 8.244113 CGCATTATGAAGGTAGTATCATAGACA 58.756 37.037 0.00 0.00 39.12 3.41
703 704 9.929180 GCATTATGAAGGTAGTATCATAGACAA 57.071 33.333 0.00 0.00 39.12 3.18
709 710 9.862149 TGAAGGTAGTATCATAGACAAGTATCA 57.138 33.333 0.00 0.00 0.00 2.15
747 2318 9.725019 CTAATTTATGATACTGCCCACTATGAA 57.275 33.333 0.00 0.00 0.00 2.57
757 2385 6.605119 ACTGCCCACTATGAATAGCTTAAAT 58.395 36.000 0.00 0.00 33.68 1.40
768 2396 4.843220 ATAGCTTAAATGGACTGCATGC 57.157 40.909 11.82 11.82 0.00 4.06
801 2429 0.247460 TGAGAGACAAGCATGACCGG 59.753 55.000 0.00 0.00 0.00 5.28
842 2481 2.203788 ACCAGTCAGCGGGGAAGA 60.204 61.111 0.00 0.00 34.09 2.87
843 2482 1.827399 GACCAGTCAGCGGGGAAGAA 61.827 60.000 0.00 0.00 34.09 2.52
844 2483 1.374947 CCAGTCAGCGGGGAAGAAA 59.625 57.895 0.00 0.00 0.00 2.52
845 2484 0.955919 CCAGTCAGCGGGGAAGAAAC 60.956 60.000 0.00 0.00 0.00 2.78
846 2485 0.250295 CAGTCAGCGGGGAAGAAACA 60.250 55.000 0.00 0.00 0.00 2.83
847 2486 0.035458 AGTCAGCGGGGAAGAAACAG 59.965 55.000 0.00 0.00 0.00 3.16
848 2487 0.034896 GTCAGCGGGGAAGAAACAGA 59.965 55.000 0.00 0.00 0.00 3.41
849 2488 0.984230 TCAGCGGGGAAGAAACAGAT 59.016 50.000 0.00 0.00 0.00 2.90
850 2489 2.093658 GTCAGCGGGGAAGAAACAGATA 60.094 50.000 0.00 0.00 0.00 1.98
851 2490 2.569853 TCAGCGGGGAAGAAACAGATAA 59.430 45.455 0.00 0.00 0.00 1.75
852 2491 2.939103 CAGCGGGGAAGAAACAGATAAG 59.061 50.000 0.00 0.00 0.00 1.73
857 2496 4.631813 CGGGGAAGAAACAGATAAGAACTG 59.368 45.833 0.00 0.00 40.68 3.16
862 2501 5.470047 AGAAACAGATAAGAACTGTCCGT 57.530 39.130 0.00 0.00 46.01 4.69
995 2634 3.382546 CGAATCAAGAATTCCCTTGCCAT 59.617 43.478 0.65 0.00 42.34 4.40
998 2637 3.509442 TCAAGAATTCCCTTGCCATTGT 58.491 40.909 0.65 0.00 42.34 2.71
1004 2643 1.140161 CCCTTGCCATTGTCATGCG 59.860 57.895 0.00 0.00 0.00 4.73
1008 2647 1.921045 TTGCCATTGTCATGCGTCCG 61.921 55.000 0.00 0.00 0.00 4.79
1013 2652 2.178876 ATTGTCATGCGTCCGTCCCA 62.179 55.000 0.00 0.00 0.00 4.37
1036 2675 7.981225 CCCATATAAATTGTGTTTTCCCTTCAG 59.019 37.037 0.00 0.00 0.00 3.02
1038 2677 9.357652 CATATAAATTGTGTTTTCCCTTCAGTG 57.642 33.333 0.00 0.00 0.00 3.66
1158 2797 1.445582 CGTGACCAGCTCCGGTAAC 60.446 63.158 0.00 1.18 40.22 2.50
1188 2827 1.234821 GCGACAACTTCAATGTCCCA 58.765 50.000 1.45 0.00 43.34 4.37
1388 3027 2.026542 GGTCAAAAAGTATCGGGGAGGT 60.027 50.000 0.00 0.00 0.00 3.85
1769 3408 1.546589 AAGTACCCCGCGTGGATGAA 61.547 55.000 16.61 0.00 37.49 2.57
1839 3478 2.112297 GTTGTGGCCAAGGACGGA 59.888 61.111 7.24 0.00 0.00 4.69
1935 3574 0.543410 TCAAGGCTGGGGTCTACGAA 60.543 55.000 0.00 0.00 0.00 3.85
1980 3619 7.577303 AGGACAAGGTCAACATATTCATGTAT 58.423 34.615 0.00 0.00 44.83 2.29
2151 3790 5.008712 GGGCAATGCAGGTAGTAATTAACTC 59.991 44.000 7.79 0.00 39.80 3.01
2233 3872 2.203294 GGGTTCCACAACACGGCT 60.203 61.111 0.00 0.00 33.70 5.52
2422 4061 1.594293 CGCCGTGTTCCAGAACTGT 60.594 57.895 11.56 0.00 41.67 3.55
2470 4109 1.115930 ACCAGCAGAACTCGGTGACT 61.116 55.000 0.00 0.00 33.71 3.41
2585 4224 3.326385 ATCCCGTCCTACCTGGGCA 62.326 63.158 0.00 0.00 41.50 5.36
2863 4502 1.904771 CATGCCCAACTACCTCGGA 59.095 57.895 0.00 0.00 0.00 4.55
2888 4527 0.934496 GGTCTAAACGCGCATGCATA 59.066 50.000 19.57 1.51 42.97 3.14
2889 4528 1.531149 GGTCTAAACGCGCATGCATAT 59.469 47.619 19.57 0.00 42.97 1.78
2890 4529 2.563976 GTCTAAACGCGCATGCATATG 58.436 47.619 19.57 6.21 42.97 1.78
3042 4696 5.377478 TCTTTTCTGGAGTTCTCTTTTCCC 58.623 41.667 0.00 0.00 0.00 3.97
3068 4722 9.773328 CTGGTAAATGATTAAGTGTATGTTGTG 57.227 33.333 0.00 0.00 0.00 3.33
3069 4723 9.508642 TGGTAAATGATTAAGTGTATGTTGTGA 57.491 29.630 0.00 0.00 0.00 3.58
3070 4724 9.988350 GGTAAATGATTAAGTGTATGTTGTGAG 57.012 33.333 0.00 0.00 0.00 3.51
3073 4727 9.897744 AAATGATTAAGTGTATGTTGTGAGTTG 57.102 29.630 0.00 0.00 0.00 3.16
3074 4728 8.621532 ATGATTAAGTGTATGTTGTGAGTTGT 57.378 30.769 0.00 0.00 0.00 3.32
3088 4742 7.066887 TGTTGTGAGTTGTGACATTGATTAACT 59.933 33.333 0.00 0.00 0.00 2.24
3140 4794 1.202110 GCGTCTGCGTTGCTACTACTA 60.202 52.381 0.00 0.00 40.81 1.82
3141 4795 2.438583 CGTCTGCGTTGCTACTACTAC 58.561 52.381 0.00 0.00 0.00 2.73
3142 4796 2.095532 CGTCTGCGTTGCTACTACTACT 59.904 50.000 0.00 0.00 0.00 2.57
3146 4800 3.021695 TGCGTTGCTACTACTACTCCAT 58.978 45.455 0.00 0.00 0.00 3.41
3251 4908 1.975407 GGACCGACCGAACCTCTCA 60.975 63.158 0.00 0.00 0.00 3.27
3252 4909 1.530013 GGACCGACCGAACCTCTCAA 61.530 60.000 0.00 0.00 0.00 3.02
3253 4910 0.316204 GACCGACCGAACCTCTCAAA 59.684 55.000 0.00 0.00 0.00 2.69
3254 4911 0.754472 ACCGACCGAACCTCTCAAAA 59.246 50.000 0.00 0.00 0.00 2.44
3286 4943 2.803956 ACGTACGCATTAGCTTGTGTTT 59.196 40.909 16.72 0.00 40.60 2.83
3287 4944 3.989167 ACGTACGCATTAGCTTGTGTTTA 59.011 39.130 16.72 0.00 40.60 2.01
3288 4945 4.448395 ACGTACGCATTAGCTTGTGTTTAA 59.552 37.500 16.72 0.00 40.60 1.52
3289 4946 5.013236 CGTACGCATTAGCTTGTGTTTAAG 58.987 41.667 9.73 0.00 40.60 1.85
3290 4947 5.389098 CGTACGCATTAGCTTGTGTTTAAGT 60.389 40.000 9.73 1.89 40.60 2.24
3291 4948 5.432885 ACGCATTAGCTTGTGTTTAAGTT 57.567 34.783 0.00 0.00 37.01 2.66
3446 5103 5.051816 ACAAACTGCAATGAACTGGAATTG 58.948 37.500 1.23 0.00 36.95 2.32
3455 5112 6.017275 GCAATGAACTGGAATTGATAGAGGAG 60.017 42.308 0.00 0.00 36.13 3.69
3461 5118 3.900601 TGGAATTGATAGAGGAGAGAGCC 59.099 47.826 0.00 0.00 0.00 4.70
3571 5228 2.774351 CCCATCCTCCCCACCCTC 60.774 72.222 0.00 0.00 0.00 4.30
3649 5317 1.047002 AAGAGGATGGGCTCGATCAG 58.953 55.000 0.00 0.00 0.00 2.90
3663 5331 1.797211 GATCAGGAGGCGGGAGTACG 61.797 65.000 0.00 0.00 0.00 3.67
3671 5339 4.678396 CGGGAGTACGCTTACGAC 57.322 61.111 0.00 0.00 43.93 4.34
3672 5340 1.297158 CGGGAGTACGCTTACGACG 60.297 63.158 0.00 0.00 43.93 5.12
3673 5341 1.584742 GGGAGTACGCTTACGACGC 60.585 63.158 0.00 0.00 43.93 5.19
3800 5474 5.001232 TGCTCAATTTCAGTACCCACTTAC 58.999 41.667 0.00 0.00 30.46 2.34
3819 5493 6.037062 CACTTACATATGGTTCTTGAATCGCA 59.963 38.462 7.80 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.280308 TAGAGGCTTGGGGGTATGTT 57.720 50.000 0.00 0.00 0.00 2.71
1 2 2.057922 CATAGAGGCTTGGGGGTATGT 58.942 52.381 0.00 0.00 0.00 2.29
2 3 1.271597 GCATAGAGGCTTGGGGGTATG 60.272 57.143 0.00 0.00 0.00 2.39
3 4 1.068121 GCATAGAGGCTTGGGGGTAT 58.932 55.000 0.00 0.00 0.00 2.73
4 5 1.060163 GGCATAGAGGCTTGGGGGTA 61.060 60.000 0.00 0.00 40.24 3.69
5 6 2.386935 GGCATAGAGGCTTGGGGGT 61.387 63.158 0.00 0.00 40.24 4.95
6 7 2.517919 GGCATAGAGGCTTGGGGG 59.482 66.667 0.00 0.00 40.24 5.40
13 14 0.107017 TTTCCTGCAGGCATAGAGGC 60.107 55.000 28.91 0.00 44.61 4.70
14 15 2.092753 TCTTTTCCTGCAGGCATAGAGG 60.093 50.000 28.91 13.14 34.44 3.69
15 16 3.272574 TCTTTTCCTGCAGGCATAGAG 57.727 47.619 28.91 18.26 34.44 2.43
16 17 3.719268 TTCTTTTCCTGCAGGCATAGA 57.281 42.857 28.91 23.21 34.44 1.98
17 18 3.949754 TCATTCTTTTCCTGCAGGCATAG 59.050 43.478 28.91 21.23 34.44 2.23
18 19 3.696051 GTCATTCTTTTCCTGCAGGCATA 59.304 43.478 28.91 11.86 34.44 3.14
19 20 2.494870 GTCATTCTTTTCCTGCAGGCAT 59.505 45.455 28.91 9.42 34.44 4.40
20 21 1.888512 GTCATTCTTTTCCTGCAGGCA 59.111 47.619 28.91 15.88 34.44 4.75
21 22 1.888512 TGTCATTCTTTTCCTGCAGGC 59.111 47.619 28.91 10.25 34.44 4.85
22 23 4.589216 TTTGTCATTCTTTTCCTGCAGG 57.411 40.909 27.87 27.87 0.00 4.85
23 24 5.775686 TCATTTGTCATTCTTTTCCTGCAG 58.224 37.500 6.78 6.78 0.00 4.41
24 25 5.787953 TCATTTGTCATTCTTTTCCTGCA 57.212 34.783 0.00 0.00 0.00 4.41
25 26 7.148523 GGATTTCATTTGTCATTCTTTTCCTGC 60.149 37.037 0.00 0.00 0.00 4.85
26 27 7.874016 TGGATTTCATTTGTCATTCTTTTCCTG 59.126 33.333 0.00 0.00 0.00 3.86
27 28 7.965718 TGGATTTCATTTGTCATTCTTTTCCT 58.034 30.769 0.00 0.00 0.00 3.36
28 29 8.606040 TTGGATTTCATTTGTCATTCTTTTCC 57.394 30.769 0.00 0.00 0.00 3.13
30 31 9.005777 CCATTGGATTTCATTTGTCATTCTTTT 57.994 29.630 0.00 0.00 0.00 2.27
31 32 7.120138 GCCATTGGATTTCATTTGTCATTCTTT 59.880 33.333 6.95 0.00 0.00 2.52
32 33 6.596497 GCCATTGGATTTCATTTGTCATTCTT 59.404 34.615 6.95 0.00 0.00 2.52
33 34 6.070424 AGCCATTGGATTTCATTTGTCATTCT 60.070 34.615 6.95 0.00 0.00 2.40
34 35 6.036735 CAGCCATTGGATTTCATTTGTCATTC 59.963 38.462 6.95 0.00 0.00 2.67
35 36 5.878116 CAGCCATTGGATTTCATTTGTCATT 59.122 36.000 6.95 0.00 0.00 2.57
36 37 5.424757 CAGCCATTGGATTTCATTTGTCAT 58.575 37.500 6.95 0.00 0.00 3.06
37 38 4.823157 CAGCCATTGGATTTCATTTGTCA 58.177 39.130 6.95 0.00 0.00 3.58
57 58 0.095245 CGCGTTGCTGTATGAACCAG 59.905 55.000 0.00 0.00 0.00 4.00
58 59 1.906994 GCGCGTTGCTGTATGAACCA 61.907 55.000 8.43 0.00 41.73 3.67
59 60 1.226018 GCGCGTTGCTGTATGAACC 60.226 57.895 8.43 0.00 41.73 3.62
60 61 0.110419 TTGCGCGTTGCTGTATGAAC 60.110 50.000 8.43 0.00 46.63 3.18
61 62 0.588737 TTTGCGCGTTGCTGTATGAA 59.411 45.000 8.43 0.00 46.63 2.57
62 63 0.801872 ATTTGCGCGTTGCTGTATGA 59.198 45.000 8.43 0.00 46.63 2.15
63 64 1.182673 GATTTGCGCGTTGCTGTATG 58.817 50.000 8.43 0.00 46.63 2.39
64 65 0.098728 GGATTTGCGCGTTGCTGTAT 59.901 50.000 8.43 0.00 46.63 2.29
65 66 0.953471 AGGATTTGCGCGTTGCTGTA 60.953 50.000 8.43 0.00 46.63 2.74
66 67 1.795170 AAGGATTTGCGCGTTGCTGT 61.795 50.000 8.43 0.00 46.63 4.40
67 68 1.067199 GAAGGATTTGCGCGTTGCTG 61.067 55.000 8.43 0.00 46.63 4.41
68 69 1.210155 GAAGGATTTGCGCGTTGCT 59.790 52.632 8.43 0.00 46.63 3.91
69 70 2.145905 CGAAGGATTTGCGCGTTGC 61.146 57.895 8.43 0.00 46.70 4.17
70 71 2.145905 GCGAAGGATTTGCGCGTTG 61.146 57.895 8.43 0.00 46.96 4.10
71 72 2.175811 GCGAAGGATTTGCGCGTT 59.824 55.556 8.43 0.00 46.96 4.84
77 78 1.717937 CAGAGCGGCGAAGGATTTG 59.282 57.895 12.98 0.00 0.00 2.32
78 79 2.109126 GCAGAGCGGCGAAGGATTT 61.109 57.895 12.98 0.00 0.00 2.17
79 80 1.676678 TAGCAGAGCGGCGAAGGATT 61.677 55.000 12.98 0.00 39.27 3.01
80 81 2.127869 TAGCAGAGCGGCGAAGGAT 61.128 57.895 12.98 0.00 39.27 3.24
81 82 2.754254 TAGCAGAGCGGCGAAGGA 60.754 61.111 12.98 0.00 39.27 3.36
82 83 2.583593 GTAGCAGAGCGGCGAAGG 60.584 66.667 12.98 0.00 39.27 3.46
83 84 0.807667 ATTGTAGCAGAGCGGCGAAG 60.808 55.000 12.98 0.00 39.27 3.79
84 85 1.083806 CATTGTAGCAGAGCGGCGAA 61.084 55.000 12.98 0.00 39.27 4.70
85 86 1.519234 CATTGTAGCAGAGCGGCGA 60.519 57.895 12.98 0.00 39.27 5.54
86 87 2.528743 CCATTGTAGCAGAGCGGCG 61.529 63.158 0.51 0.51 39.27 6.46
87 88 2.182842 CCCATTGTAGCAGAGCGGC 61.183 63.158 0.00 0.00 0.00 6.53
88 89 1.091771 CACCCATTGTAGCAGAGCGG 61.092 60.000 0.00 0.00 0.00 5.52
89 90 0.108186 TCACCCATTGTAGCAGAGCG 60.108 55.000 0.00 0.00 0.00 5.03
90 91 2.012673 CTTCACCCATTGTAGCAGAGC 58.987 52.381 0.00 0.00 0.00 4.09
91 92 2.237143 TCCTTCACCCATTGTAGCAGAG 59.763 50.000 0.00 0.00 0.00 3.35
92 93 2.237143 CTCCTTCACCCATTGTAGCAGA 59.763 50.000 0.00 0.00 0.00 4.26
93 94 2.026822 ACTCCTTCACCCATTGTAGCAG 60.027 50.000 0.00 0.00 0.00 4.24
94 95 1.985159 ACTCCTTCACCCATTGTAGCA 59.015 47.619 0.00 0.00 0.00 3.49
95 96 2.789409 ACTCCTTCACCCATTGTAGC 57.211 50.000 0.00 0.00 0.00 3.58
96 97 4.020218 TCTGAACTCCTTCACCCATTGTAG 60.020 45.833 0.00 0.00 32.68 2.74
97 98 3.907474 TCTGAACTCCTTCACCCATTGTA 59.093 43.478 0.00 0.00 32.68 2.41
98 99 2.711009 TCTGAACTCCTTCACCCATTGT 59.289 45.455 0.00 0.00 32.68 2.71
99 100 3.423539 TCTGAACTCCTTCACCCATTG 57.576 47.619 0.00 0.00 32.68 2.82
100 101 3.588842 TCATCTGAACTCCTTCACCCATT 59.411 43.478 0.00 0.00 32.68 3.16
101 102 3.184628 TCATCTGAACTCCTTCACCCAT 58.815 45.455 0.00 0.00 32.68 4.00
102 103 2.619931 TCATCTGAACTCCTTCACCCA 58.380 47.619 0.00 0.00 32.68 4.51
103 104 3.198635 TCATCATCTGAACTCCTTCACCC 59.801 47.826 0.00 0.00 32.68 4.61
104 105 4.478206 TCATCATCTGAACTCCTTCACC 57.522 45.455 0.00 0.00 32.68 4.02
105 106 6.815089 AGTATCATCATCTGAACTCCTTCAC 58.185 40.000 0.00 0.00 37.44 3.18
106 107 7.782168 AGTAGTATCATCATCTGAACTCCTTCA 59.218 37.037 0.00 0.00 37.44 3.02
107 108 8.177119 AGTAGTATCATCATCTGAACTCCTTC 57.823 38.462 0.00 0.00 37.44 3.46
108 109 8.546083 AAGTAGTATCATCATCTGAACTCCTT 57.454 34.615 0.00 0.00 37.44 3.36
109 110 8.546083 AAAGTAGTATCATCATCTGAACTCCT 57.454 34.615 0.00 0.00 37.44 3.69
110 111 9.255304 GAAAAGTAGTATCATCATCTGAACTCC 57.745 37.037 0.00 0.00 37.44 3.85
150 151 9.829507 AATGAATACAAACAATGAGACCAAAAA 57.170 25.926 0.00 0.00 0.00 1.94
151 152 9.829507 AAATGAATACAAACAATGAGACCAAAA 57.170 25.926 0.00 0.00 0.00 2.44
152 153 9.474920 GAAATGAATACAAACAATGAGACCAAA 57.525 29.630 0.00 0.00 0.00 3.28
153 154 8.637099 TGAAATGAATACAAACAATGAGACCAA 58.363 29.630 0.00 0.00 0.00 3.67
154 155 8.081633 GTGAAATGAATACAAACAATGAGACCA 58.918 33.333 0.00 0.00 0.00 4.02
155 156 8.299570 AGTGAAATGAATACAAACAATGAGACC 58.700 33.333 0.00 0.00 0.00 3.85
156 157 9.334693 GAGTGAAATGAATACAAACAATGAGAC 57.665 33.333 0.00 0.00 0.00 3.36
157 158 9.288576 AGAGTGAAATGAATACAAACAATGAGA 57.711 29.630 0.00 0.00 0.00 3.27
158 159 9.903682 AAGAGTGAAATGAATACAAACAATGAG 57.096 29.630 0.00 0.00 0.00 2.90
159 160 9.681692 CAAGAGTGAAATGAATACAAACAATGA 57.318 29.630 0.00 0.00 0.00 2.57
160 161 8.918658 CCAAGAGTGAAATGAATACAAACAATG 58.081 33.333 0.00 0.00 0.00 2.82
161 162 8.090214 CCCAAGAGTGAAATGAATACAAACAAT 58.910 33.333 0.00 0.00 0.00 2.71
162 163 7.069331 ACCCAAGAGTGAAATGAATACAAACAA 59.931 33.333 0.00 0.00 0.00 2.83
163 164 6.549364 ACCCAAGAGTGAAATGAATACAAACA 59.451 34.615 0.00 0.00 0.00 2.83
164 165 6.981722 ACCCAAGAGTGAAATGAATACAAAC 58.018 36.000 0.00 0.00 0.00 2.93
165 166 7.004086 AGACCCAAGAGTGAAATGAATACAAA 58.996 34.615 0.00 0.00 0.00 2.83
166 167 6.542821 AGACCCAAGAGTGAAATGAATACAA 58.457 36.000 0.00 0.00 0.00 2.41
167 168 6.126863 AGACCCAAGAGTGAAATGAATACA 57.873 37.500 0.00 0.00 0.00 2.29
168 169 6.655003 TGAAGACCCAAGAGTGAAATGAATAC 59.345 38.462 0.00 0.00 0.00 1.89
169 170 6.655003 GTGAAGACCCAAGAGTGAAATGAATA 59.345 38.462 0.00 0.00 0.00 1.75
170 171 5.474876 GTGAAGACCCAAGAGTGAAATGAAT 59.525 40.000 0.00 0.00 0.00 2.57
171 172 4.821805 GTGAAGACCCAAGAGTGAAATGAA 59.178 41.667 0.00 0.00 0.00 2.57
172 173 4.389374 GTGAAGACCCAAGAGTGAAATGA 58.611 43.478 0.00 0.00 0.00 2.57
173 174 3.503748 GGTGAAGACCCAAGAGTGAAATG 59.496 47.826 0.00 0.00 36.03 2.32
174 175 3.756117 GGTGAAGACCCAAGAGTGAAAT 58.244 45.455 0.00 0.00 36.03 2.17
175 176 3.208747 GGTGAAGACCCAAGAGTGAAA 57.791 47.619 0.00 0.00 36.03 2.69
176 177 2.930826 GGTGAAGACCCAAGAGTGAA 57.069 50.000 0.00 0.00 36.03 3.18
186 187 2.222027 CAAACTCACTGGGTGAAGACC 58.778 52.381 2.04 0.00 42.26 3.85
187 188 2.614057 CACAAACTCACTGGGTGAAGAC 59.386 50.000 2.04 0.00 42.26 3.01
188 189 2.421388 CCACAAACTCACTGGGTGAAGA 60.421 50.000 2.04 0.00 42.26 2.87
189 190 1.949525 CCACAAACTCACTGGGTGAAG 59.050 52.381 2.04 0.21 42.26 3.02
190 191 1.283613 ACCACAAACTCACTGGGTGAA 59.716 47.619 2.04 0.00 42.26 3.18
191 192 0.916086 ACCACAAACTCACTGGGTGA 59.084 50.000 0.43 0.43 40.50 4.02
192 193 2.158813 ACTACCACAAACTCACTGGGTG 60.159 50.000 0.00 0.00 34.45 4.61
193 194 2.124411 ACTACCACAAACTCACTGGGT 58.876 47.619 0.00 0.00 0.00 4.51
194 195 2.878406 CAACTACCACAAACTCACTGGG 59.122 50.000 0.00 0.00 0.00 4.45
195 196 2.878406 CCAACTACCACAAACTCACTGG 59.122 50.000 0.00 0.00 0.00 4.00
196 197 3.541632 ACCAACTACCACAAACTCACTG 58.458 45.455 0.00 0.00 0.00 3.66
197 198 3.926058 ACCAACTACCACAAACTCACT 57.074 42.857 0.00 0.00 0.00 3.41
198 199 3.488553 GCAACCAACTACCACAAACTCAC 60.489 47.826 0.00 0.00 0.00 3.51
199 200 2.685897 GCAACCAACTACCACAAACTCA 59.314 45.455 0.00 0.00 0.00 3.41
200 201 2.034179 GGCAACCAACTACCACAAACTC 59.966 50.000 0.00 0.00 0.00 3.01
201 202 2.028876 GGCAACCAACTACCACAAACT 58.971 47.619 0.00 0.00 0.00 2.66
202 203 2.028876 AGGCAACCAACTACCACAAAC 58.971 47.619 0.00 0.00 37.17 2.93
203 204 2.028130 CAGGCAACCAACTACCACAAA 58.972 47.619 0.00 0.00 37.17 2.83
204 205 1.064314 ACAGGCAACCAACTACCACAA 60.064 47.619 0.00 0.00 37.17 3.33
205 206 0.548989 ACAGGCAACCAACTACCACA 59.451 50.000 0.00 0.00 37.17 4.17
206 207 2.554370 TACAGGCAACCAACTACCAC 57.446 50.000 0.00 0.00 37.17 4.16
207 208 3.841845 ACTATACAGGCAACCAACTACCA 59.158 43.478 0.00 0.00 37.17 3.25
208 209 4.482952 ACTATACAGGCAACCAACTACC 57.517 45.455 0.00 0.00 37.17 3.18
209 210 5.731591 AGAACTATACAGGCAACCAACTAC 58.268 41.667 0.00 0.00 37.17 2.73
210 211 6.368779 AAGAACTATACAGGCAACCAACTA 57.631 37.500 0.00 0.00 37.17 2.24
211 212 4.910458 AGAACTATACAGGCAACCAACT 57.090 40.909 0.00 0.00 37.17 3.16
212 213 5.959618 AAAGAACTATACAGGCAACCAAC 57.040 39.130 0.00 0.00 37.17 3.77
213 214 5.475564 GGAAAAGAACTATACAGGCAACCAA 59.524 40.000 0.00 0.00 37.17 3.67
214 215 5.007682 GGAAAAGAACTATACAGGCAACCA 58.992 41.667 0.00 0.00 37.17 3.67
215 216 5.254115 AGGAAAAGAACTATACAGGCAACC 58.746 41.667 0.00 0.00 37.17 3.77
216 217 6.819397 AAGGAAAAGAACTATACAGGCAAC 57.181 37.500 0.00 0.00 0.00 4.17
217 218 8.161425 ACTAAAGGAAAAGAACTATACAGGCAA 58.839 33.333 0.00 0.00 0.00 4.52
218 219 7.686434 ACTAAAGGAAAAGAACTATACAGGCA 58.314 34.615 0.00 0.00 0.00 4.75
219 220 8.563123 AACTAAAGGAAAAGAACTATACAGGC 57.437 34.615 0.00 0.00 0.00 4.85
289 290 9.454585 CATCATGAATCTGTTGCGTATTTAATT 57.545 29.630 0.00 0.00 0.00 1.40
290 291 8.623903 ACATCATGAATCTGTTGCGTATTTAAT 58.376 29.630 0.00 0.00 0.00 1.40
291 292 7.984391 ACATCATGAATCTGTTGCGTATTTAA 58.016 30.769 0.00 0.00 0.00 1.52
292 293 7.552458 ACATCATGAATCTGTTGCGTATTTA 57.448 32.000 0.00 0.00 0.00 1.40
293 294 6.441093 ACATCATGAATCTGTTGCGTATTT 57.559 33.333 0.00 0.00 0.00 1.40
294 295 6.441093 AACATCATGAATCTGTTGCGTATT 57.559 33.333 11.45 0.00 32.16 1.89
295 296 6.441093 AAACATCATGAATCTGTTGCGTAT 57.559 33.333 12.67 0.00 33.60 3.06
296 297 5.878332 AAACATCATGAATCTGTTGCGTA 57.122 34.783 12.67 0.00 33.60 4.42
297 298 4.771590 AAACATCATGAATCTGTTGCGT 57.228 36.364 12.67 0.00 33.60 5.24
298 299 5.860182 AGAAAAACATCATGAATCTGTTGCG 59.140 36.000 12.67 0.00 33.60 4.85
299 300 7.647907 AAGAAAAACATCATGAATCTGTTGC 57.352 32.000 12.67 6.99 33.60 4.17
324 325 9.406828 GGTTAATTGAACGCTAATCTTTTCTTT 57.593 29.630 0.00 0.00 39.12 2.52
325 326 7.749126 CGGTTAATTGAACGCTAATCTTTTCTT 59.251 33.333 0.00 0.00 39.12 2.52
326 327 7.118680 TCGGTTAATTGAACGCTAATCTTTTCT 59.881 33.333 2.24 0.00 39.12 2.52
327 328 7.215755 GTCGGTTAATTGAACGCTAATCTTTTC 59.784 37.037 2.24 0.00 39.12 2.29
328 329 7.019418 GTCGGTTAATTGAACGCTAATCTTTT 58.981 34.615 2.24 0.00 39.12 2.27
340 341 3.464907 TCCACAACGTCGGTTAATTGAA 58.535 40.909 0.00 0.00 33.72 2.69
345 346 3.758023 TCTATCTCCACAACGTCGGTTAA 59.242 43.478 0.00 0.00 33.72 2.01
349 350 1.743958 AGTCTATCTCCACAACGTCGG 59.256 52.381 0.00 0.00 0.00 4.79
467 468 8.228464 GGACAACTCTAATCGAACCTTAAAAAG 58.772 37.037 0.00 0.00 0.00 2.27
468 469 7.935210 AGGACAACTCTAATCGAACCTTAAAAA 59.065 33.333 0.00 0.00 0.00 1.94
474 475 6.793505 ATAAGGACAACTCTAATCGAACCT 57.206 37.500 0.00 0.00 0.00 3.50
475 476 9.843334 CTATATAAGGACAACTCTAATCGAACC 57.157 37.037 0.00 0.00 0.00 3.62
519 520 7.567571 GTTTTCTTATTCAAAAAGGCTGAAGC 58.432 34.615 0.00 0.00 36.30 3.86
520 521 7.096065 CCGTTTTCTTATTCAAAAAGGCTGAAG 60.096 37.037 0.00 0.00 36.16 3.02
521 522 6.699642 CCGTTTTCTTATTCAAAAAGGCTGAA 59.300 34.615 0.00 0.00 36.16 3.02
522 523 6.183360 ACCGTTTTCTTATTCAAAAAGGCTGA 60.183 34.615 9.04 0.00 42.72 4.26
523 524 5.983118 ACCGTTTTCTTATTCAAAAAGGCTG 59.017 36.000 9.04 0.00 42.72 4.85
524 525 5.983118 CACCGTTTTCTTATTCAAAAAGGCT 59.017 36.000 9.04 0.00 42.72 4.58
525 526 5.980715 TCACCGTTTTCTTATTCAAAAAGGC 59.019 36.000 9.04 0.00 42.72 4.35
533 534 4.083003 TGTGGCATCACCGTTTTCTTATTC 60.083 41.667 0.00 0.00 43.94 1.75
539 540 0.385473 CGTGTGGCATCACCGTTTTC 60.385 55.000 12.45 0.00 43.94 2.29
541 542 2.258013 CCGTGTGGCATCACCGTTT 61.258 57.895 12.45 0.00 43.94 3.60
544 545 0.461163 TTATCCGTGTGGCATCACCG 60.461 55.000 12.45 7.90 43.94 4.94
545 546 1.967319 ATTATCCGTGTGGCATCACC 58.033 50.000 12.45 0.00 42.98 4.02
546 547 4.370364 AAAATTATCCGTGTGGCATCAC 57.630 40.909 9.30 9.30 43.87 3.06
568 569 2.297880 TGCCAGCTCGTAAACTCTGTAA 59.702 45.455 0.00 0.00 0.00 2.41
569 570 1.890489 TGCCAGCTCGTAAACTCTGTA 59.110 47.619 0.00 0.00 0.00 2.74
572 573 0.679505 TGTGCCAGCTCGTAAACTCT 59.320 50.000 0.00 0.00 0.00 3.24
575 576 1.135972 CACATGTGCCAGCTCGTAAAC 60.136 52.381 13.94 0.00 0.00 2.01
576 577 1.155889 CACATGTGCCAGCTCGTAAA 58.844 50.000 13.94 0.00 0.00 2.01
577 578 0.673333 CCACATGTGCCAGCTCGTAA 60.673 55.000 20.81 0.00 0.00 3.18
578 579 1.079197 CCACATGTGCCAGCTCGTA 60.079 57.895 20.81 0.00 0.00 3.43
580 581 3.807538 GCCACATGTGCCAGCTCG 61.808 66.667 20.81 6.00 0.00 5.03
581 582 2.674033 TGCCACATGTGCCAGCTC 60.674 61.111 20.81 5.14 0.00 4.09
582 583 2.675423 CTGCCACATGTGCCAGCT 60.675 61.111 22.38 0.00 29.10 4.24
584 585 1.303074 ACTCTGCCACATGTGCCAG 60.303 57.895 26.73 26.73 37.39 4.85
585 586 1.601477 CACTCTGCCACATGTGCCA 60.601 57.895 20.81 15.13 0.00 4.92
586 587 2.338015 CCACTCTGCCACATGTGCC 61.338 63.158 20.81 10.49 0.00 5.01
589 590 2.759114 CCCCACTCTGCCACATGT 59.241 61.111 0.00 0.00 0.00 3.21
590 591 2.044650 CCCCCACTCTGCCACATG 60.045 66.667 0.00 0.00 0.00 3.21
607 608 3.053896 GCGCTGGGTAACACCACC 61.054 66.667 0.00 0.00 41.02 4.61
608 609 1.674322 ATGCGCTGGGTAACACCAC 60.674 57.895 9.73 0.00 41.02 4.16
609 610 1.673993 CATGCGCTGGGTAACACCA 60.674 57.895 9.73 0.00 41.02 4.17
610 611 0.391927 TACATGCGCTGGGTAACACC 60.392 55.000 9.73 0.00 37.60 4.16
611 612 1.006832 CTACATGCGCTGGGTAACAC 58.993 55.000 9.73 0.00 39.74 3.32
613 614 0.177141 TCCTACATGCGCTGGGTAAC 59.823 55.000 9.73 0.00 0.00 2.50
615 616 1.128200 AATCCTACATGCGCTGGGTA 58.872 50.000 9.73 7.57 0.00 3.69
616 617 1.128200 TAATCCTACATGCGCTGGGT 58.872 50.000 9.73 6.68 0.00 4.51
617 618 2.479566 ATAATCCTACATGCGCTGGG 57.520 50.000 9.73 0.00 0.00 4.45
618 619 3.402110 TGAATAATCCTACATGCGCTGG 58.598 45.455 9.73 2.61 0.00 4.85
620 621 5.877012 CCTTATGAATAATCCTACATGCGCT 59.123 40.000 9.73 0.00 0.00 5.92
621 622 5.874810 TCCTTATGAATAATCCTACATGCGC 59.125 40.000 0.00 0.00 0.00 6.09
626 627 9.847224 GGTCTTTTCCTTATGAATAATCCTACA 57.153 33.333 0.00 0.00 31.67 2.74
627 628 8.989980 CGGTCTTTTCCTTATGAATAATCCTAC 58.010 37.037 0.00 0.00 31.67 3.18
628 629 8.154856 CCGGTCTTTTCCTTATGAATAATCCTA 58.845 37.037 0.00 0.00 31.67 2.94
629 630 6.998673 CCGGTCTTTTCCTTATGAATAATCCT 59.001 38.462 0.00 0.00 31.67 3.24
630 631 6.294010 GCCGGTCTTTTCCTTATGAATAATCC 60.294 42.308 1.90 0.00 31.67 3.01
631 632 6.262273 TGCCGGTCTTTTCCTTATGAATAATC 59.738 38.462 1.90 0.00 31.67 1.75
632 633 6.126409 TGCCGGTCTTTTCCTTATGAATAAT 58.874 36.000 1.90 0.00 31.67 1.28
633 634 5.502079 TGCCGGTCTTTTCCTTATGAATAA 58.498 37.500 1.90 0.00 31.67 1.40
634 635 5.105567 TGCCGGTCTTTTCCTTATGAATA 57.894 39.130 1.90 0.00 31.67 1.75
635 636 3.947834 CTGCCGGTCTTTTCCTTATGAAT 59.052 43.478 1.90 0.00 31.67 2.57
636 637 3.343617 CTGCCGGTCTTTTCCTTATGAA 58.656 45.455 1.90 0.00 0.00 2.57
637 638 2.939640 GCTGCCGGTCTTTTCCTTATGA 60.940 50.000 1.90 0.00 0.00 2.15
638 639 1.401905 GCTGCCGGTCTTTTCCTTATG 59.598 52.381 1.90 0.00 0.00 1.90
640 641 0.690762 AGCTGCCGGTCTTTTCCTTA 59.309 50.000 1.90 0.00 0.00 2.69
641 642 0.690762 TAGCTGCCGGTCTTTTCCTT 59.309 50.000 1.90 0.00 0.00 3.36
642 643 0.690762 TTAGCTGCCGGTCTTTTCCT 59.309 50.000 1.90 0.00 0.00 3.36
643 644 1.530323 TTTAGCTGCCGGTCTTTTCC 58.470 50.000 1.90 0.00 0.00 3.13
645 646 3.153919 TCATTTTAGCTGCCGGTCTTTT 58.846 40.909 1.90 0.00 0.00 2.27
646 647 2.790433 TCATTTTAGCTGCCGGTCTTT 58.210 42.857 1.90 0.00 0.00 2.52
647 648 2.488153 GTTCATTTTAGCTGCCGGTCTT 59.512 45.455 1.90 0.00 0.00 3.01
649 650 2.084546 AGTTCATTTTAGCTGCCGGTC 58.915 47.619 1.90 0.00 0.00 4.79
650 651 1.812571 CAGTTCATTTTAGCTGCCGGT 59.187 47.619 1.90 0.00 0.00 5.28
655 656 4.093514 CGACATGCAGTTCATTTTAGCTG 58.906 43.478 0.00 0.00 31.79 4.24
656 657 3.426695 GCGACATGCAGTTCATTTTAGCT 60.427 43.478 0.00 0.00 45.45 3.32
657 658 2.848302 GCGACATGCAGTTCATTTTAGC 59.152 45.455 0.00 0.00 45.45 3.09
671 672 6.868339 TGATACTACCTTCATAATGCGACATG 59.132 38.462 0.00 0.00 0.00 3.21
672 673 6.993079 TGATACTACCTTCATAATGCGACAT 58.007 36.000 0.00 0.00 0.00 3.06
673 674 6.399639 TGATACTACCTTCATAATGCGACA 57.600 37.500 0.00 0.00 0.00 4.35
674 675 8.459635 TCTATGATACTACCTTCATAATGCGAC 58.540 37.037 0.00 0.00 35.13 5.19
675 676 8.459635 GTCTATGATACTACCTTCATAATGCGA 58.540 37.037 0.00 0.00 35.13 5.10
676 677 8.244113 TGTCTATGATACTACCTTCATAATGCG 58.756 37.037 0.00 0.00 35.13 4.73
677 678 9.929180 TTGTCTATGATACTACCTTCATAATGC 57.071 33.333 0.00 0.00 35.13 3.56
712 713 9.166173 GGCAGTATCATAAATTAGTATCATGCA 57.834 33.333 0.00 0.00 0.00 3.96
714 715 9.671279 TGGGCAGTATCATAAATTAGTATCATG 57.329 33.333 0.00 0.00 0.00 3.07
715 716 9.672673 GTGGGCAGTATCATAAATTAGTATCAT 57.327 33.333 0.00 0.00 0.00 2.45
716 717 8.880244 AGTGGGCAGTATCATAAATTAGTATCA 58.120 33.333 0.00 0.00 0.00 2.15
721 722 9.725019 TTCATAGTGGGCAGTATCATAAATTAG 57.275 33.333 0.00 0.00 0.00 1.73
724 725 9.896645 CTATTCATAGTGGGCAGTATCATAAAT 57.103 33.333 0.00 0.00 0.00 1.40
725 726 7.824289 GCTATTCATAGTGGGCAGTATCATAAA 59.176 37.037 0.00 0.00 32.96 1.40
726 727 7.180946 AGCTATTCATAGTGGGCAGTATCATAA 59.819 37.037 0.00 0.00 32.96 1.90
727 728 6.669591 AGCTATTCATAGTGGGCAGTATCATA 59.330 38.462 0.00 0.00 32.96 2.15
728 729 5.486775 AGCTATTCATAGTGGGCAGTATCAT 59.513 40.000 0.00 0.00 32.96 2.45
729 730 4.840680 AGCTATTCATAGTGGGCAGTATCA 59.159 41.667 0.00 0.00 32.96 2.15
730 731 5.413309 AGCTATTCATAGTGGGCAGTATC 57.587 43.478 0.00 0.00 32.96 2.24
734 2305 6.072286 CCATTTAAGCTATTCATAGTGGGCAG 60.072 42.308 0.00 0.00 32.96 4.85
737 2308 7.173907 CAGTCCATTTAAGCTATTCATAGTGGG 59.826 40.741 0.00 0.00 32.96 4.61
743 2314 6.516194 GCATGCAGTCCATTTAAGCTATTCAT 60.516 38.462 14.21 0.00 29.71 2.57
747 2318 3.571401 GGCATGCAGTCCATTTAAGCTAT 59.429 43.478 21.36 0.00 29.71 2.97
768 2396 3.253188 TGTCTCTCAAAAGGAAAATGCGG 59.747 43.478 0.00 0.00 0.00 5.69
778 2406 3.120408 CGGTCATGCTTGTCTCTCAAAAG 60.120 47.826 0.00 0.00 35.48 2.27
801 2429 6.853362 GTCATTGTCTGTCTGCTTTCTAAAAC 59.147 38.462 0.00 0.00 0.00 2.43
842 2481 6.585695 TCTACGGACAGTTCTTATCTGTTT 57.414 37.500 0.00 0.00 44.68 2.83
843 2482 6.585695 TTCTACGGACAGTTCTTATCTGTT 57.414 37.500 0.00 0.00 44.68 3.16
844 2483 6.153000 ACATTCTACGGACAGTTCTTATCTGT 59.847 38.462 0.00 0.00 46.86 3.41
845 2484 6.565234 ACATTCTACGGACAGTTCTTATCTG 58.435 40.000 0.00 0.00 38.68 2.90
846 2485 6.377429 TGACATTCTACGGACAGTTCTTATCT 59.623 38.462 0.00 0.00 0.00 1.98
847 2486 6.472808 GTGACATTCTACGGACAGTTCTTATC 59.527 42.308 0.00 0.00 0.00 1.75
848 2487 6.331061 GTGACATTCTACGGACAGTTCTTAT 58.669 40.000 0.00 0.00 0.00 1.73
849 2488 5.336213 GGTGACATTCTACGGACAGTTCTTA 60.336 44.000 0.00 0.00 0.00 2.10
850 2489 4.557205 GTGACATTCTACGGACAGTTCTT 58.443 43.478 0.00 0.00 0.00 2.52
851 2490 3.056749 GGTGACATTCTACGGACAGTTCT 60.057 47.826 0.00 0.00 0.00 3.01
852 2491 3.251571 GGTGACATTCTACGGACAGTTC 58.748 50.000 0.00 0.00 0.00 3.01
857 2496 0.899720 TGGGGTGACATTCTACGGAC 59.100 55.000 0.00 0.00 0.00 4.79
963 2602 1.350193 TCTTGATTCGAGCGCTGTTC 58.650 50.000 18.48 6.59 0.00 3.18
995 2634 2.047655 GGGACGGACGCATGACAA 60.048 61.111 0.00 0.00 0.00 3.18
1004 2643 6.445357 AAACACAATTTATATGGGACGGAC 57.555 37.500 0.00 0.00 0.00 4.79
1008 2647 7.418337 AGGGAAAACACAATTTATATGGGAC 57.582 36.000 0.00 0.00 0.00 4.46
1013 2652 8.034804 GCACTGAAGGGAAAACACAATTTATAT 58.965 33.333 0.00 0.00 0.00 0.86
1038 2677 1.916697 GCGAGAAAGGTTGCTGAGGC 61.917 60.000 0.00 0.00 39.26 4.70
1158 2797 1.024579 AGTTGTCGCCGGCCTTATTG 61.025 55.000 23.46 5.48 0.00 1.90
1188 2827 2.116125 GCAAGGTTGGCCTCACCT 59.884 61.111 18.84 18.84 46.33 4.00
1388 3027 1.906824 AAGGGGTCGCTCGACTTGA 60.907 57.895 19.88 0.00 44.04 3.02
1822 3461 1.515521 CTTCCGTCCTTGGCCACAAC 61.516 60.000 3.88 2.62 32.14 3.32
1839 3478 1.327303 TGGTCTTGAATTTGCCGCTT 58.673 45.000 0.00 0.00 0.00 4.68
1908 3547 0.105039 CCCCAGCCTTGACGTAGATC 59.895 60.000 0.00 0.00 0.00 2.75
1965 3604 4.377328 CCGTCGCCATACATGAATATGTTG 60.377 45.833 0.00 0.00 45.01 3.33
2151 3790 1.846782 GCAGCAGACAAGATACGTACG 59.153 52.381 15.01 15.01 0.00 3.67
2422 4061 2.278792 CGGCGCGTGATGATGAGA 60.279 61.111 8.43 0.00 0.00 3.27
2585 4224 1.536662 AGAACTCCTTCCACGGCCT 60.537 57.895 0.00 0.00 0.00 5.19
2682 4321 1.592590 CGTAGTAGAGCGTCTTGAGCG 60.593 57.143 0.00 0.00 40.04 5.03
2863 4502 1.803334 TGCGCGTTTAGACCTTGAAT 58.197 45.000 8.43 0.00 0.00 2.57
3042 4696 9.773328 CACAACATACACTTAATCATTTACCAG 57.227 33.333 0.00 0.00 0.00 4.00
3068 4722 6.801539 TCCAGTTAATCAATGTCACAACTC 57.198 37.500 0.00 0.00 0.00 3.01
3069 4723 7.581213 TTTCCAGTTAATCAATGTCACAACT 57.419 32.000 0.00 0.00 0.00 3.16
3070 4724 8.702438 CATTTTCCAGTTAATCAATGTCACAAC 58.298 33.333 0.00 0.00 0.00 3.32
3071 4725 8.420222 ACATTTTCCAGTTAATCAATGTCACAA 58.580 29.630 0.00 0.00 30.75 3.33
3072 4726 7.950512 ACATTTTCCAGTTAATCAATGTCACA 58.049 30.769 0.00 0.00 30.75 3.58
3088 4742 5.302568 GGGCATCTGAATGATACATTTTCCA 59.697 40.000 0.00 0.00 34.61 3.53
3140 4794 9.918630 GCAAATATGAGCATAAAATAATGGAGT 57.081 29.630 0.00 0.00 0.00 3.85
3142 4796 9.917129 CAGCAAATATGAGCATAAAATAATGGA 57.083 29.630 2.90 0.00 0.00 3.41
3146 4800 8.196103 TGTGCAGCAAATATGAGCATAAAATAA 58.804 29.630 0.00 0.00 39.94 1.40
3161 4815 3.825014 AGAAGTTGAGATGTGCAGCAAAT 59.175 39.130 0.00 0.00 0.00 2.32
3220 4874 2.579738 GGTCCCTTCTGTCTCGGC 59.420 66.667 0.00 0.00 0.00 5.54
3252 4909 6.431198 AATGCGTACGTGGAGATTATTTTT 57.569 33.333 17.90 0.00 0.00 1.94
3253 4910 6.292703 GCTAATGCGTACGTGGAGATTATTTT 60.293 38.462 17.90 0.00 0.00 1.82
3254 4911 5.176958 GCTAATGCGTACGTGGAGATTATTT 59.823 40.000 17.90 0.00 0.00 1.40
3286 4943 4.530875 TGTTTTGACCCGGGTTAAACTTA 58.469 39.130 37.89 26.81 34.19 2.24
3287 4944 3.363627 TGTTTTGACCCGGGTTAAACTT 58.636 40.909 37.89 18.60 34.19 2.66
3288 4945 3.015675 TGTTTTGACCCGGGTTAAACT 57.984 42.857 37.89 19.22 34.19 2.66
3289 4946 3.797451 TTGTTTTGACCCGGGTTAAAC 57.203 42.857 35.37 35.37 34.19 2.01
3290 4947 3.768215 AGTTTGTTTTGACCCGGGTTAAA 59.232 39.130 33.26 33.26 32.92 1.52
3291 4948 3.363627 AGTTTGTTTTGACCCGGGTTAA 58.636 40.909 30.89 28.20 0.00 2.01
3446 5103 1.582610 CGGCGGCTCTCTCCTCTATC 61.583 65.000 7.61 0.00 0.00 2.08
3479 5136 3.653344 GTGCATAGTGAGAAGTGACACA 58.347 45.455 8.59 0.00 39.18 3.72
3655 5323 1.584742 GCGTCGTAAGCGTACTCCC 60.585 63.158 8.19 0.00 38.71 4.30
3663 5331 3.236137 GTCGTCGGCGTCGTAAGC 61.236 66.667 24.03 10.81 39.49 3.09
3665 5333 3.353114 CTCGTCGTCGGCGTCGTAA 62.353 63.158 26.20 9.40 46.29 3.18
3669 5337 4.808238 GTCCTCGTCGTCGGCGTC 62.808 72.222 19.81 1.92 39.49 5.19
3672 5340 2.862347 AAATCGTCCTCGTCGTCGGC 62.862 60.000 1.55 0.00 38.33 5.54
3673 5341 0.860618 GAAATCGTCCTCGTCGTCGG 60.861 60.000 1.55 0.00 38.33 4.79
3800 5474 4.705492 CGATGCGATTCAAGAACCATATG 58.295 43.478 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.